BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1967 (PAB1967) DE:Hypothetical protein
         (261 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75178 hypothetical protein PAB1967 - Pyrococcus abyssi (st...   518  e-146
pir||B71036 hypothetical protein PH1578 - Pyrococcus horikoshii ...   289  2e-77

>pir||C75178 hypothetical protein PAB1967 - Pyrococcus abyssi (strain Orsay)
           >gi|5458016|emb|CAB49506.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 261
           
 Score =  518 bits (1319), Expect = e-146
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MKFAIIGNLTIDIVNGKKKPGGGAYYSGLILSKHTGVTIYTKIGDDYPKKWLEEISSYAE 60
           MKFAIIGNLTIDIVNGKKKPGGGAYYSGLILSKHTGVTIYTKIGDDYPKKWLEEISSYAE
Sbjct: 1   MKFAIIGNLTIDIVNGKKKPGGGAYYSGLILSKHTGVTIYTKIGDDYPKKWLEEISSYAE 60

Query: 61  VVAFKGSSTTMYELFYSGEGRVIKALSPGDKISADELSTISEEKVIINPVAGEIGEGDVL 120
           VVAFKGSSTTMYELFYSGEGRVIKALSPGDKISADELSTISEEKVIINPVAGEIGEGDVL
Sbjct: 61  VVAFKGSSTTMYELFYSGEGRVIKALSPGDKISADELSTISEEKVIINPVAGEIGEGDVL 120

Query: 121 IFKKPCLDLQGFVRELRKDGLVTLKEIDGEFLENASIVHSSTEEFRMVKNLKLPDVLAVT 180
           IFKKPCLDLQGFVRELRKDGLVTLKEIDGEFLENASIVHSSTEEFRMVKNLKLPDVLAVT
Sbjct: 121 IFKKPCLDLQGFVRELRKDGLVTLKEIDGEFLENASIVHSSTEEFRMVKNLKLPDVLAVT 180

Query: 181 NGSEEGVVITRKGKITFKPRKVDVKDPTGAGDAFLALLSYGINRYNELKRALEFALDETA 240
           NGSEEGVVITRKGKITFKPRKVDVKDPTGAGDAFLALLSYGINRYNELKRALEFALDETA
Sbjct: 181 NGSEEGVVITRKGKITFKPRKVDVKDPTGAGDAFLALLSYGINRYNELKRALEFALDETA 240

Query: 241 KFLKLGLRSYLEDRDDEASIG 261
           KFLKLGLRSYLEDRDDEASIG
Sbjct: 241 KFLKLGLRSYLEDRDDEASIG 261


>pir||B71036 hypothetical protein PH1578 - Pyrococcus horikoshii
           >gi|3258007|dbj|BAA30690.1| (AP000006) 248aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 248
           
 Score =  289 bits (732), Expect = 2e-77
 Identities = 144/244 (59%), Positives = 184/244 (75%), Gaps = 3/244 (1%)

Query: 1   MKFAIIGNLTIDIVNGKKKPGGGAYYSGLILSKHTGVTIYTKIGDDYPKKWLEEISSYAE 60
           MKFA++GNLTIDI+ G K+PGGG YYS L LSK   VTIYTKIG DYPK+WL EI  +AE
Sbjct: 1   MKFAVVGNLTIDIIKGTKRPGGGVYYSALALSKFADVTIYTKIGPDYPKEWLGEIEEFAE 60

Query: 61  VVAFKGSSTTMYELFYSGEGRVIKALSPGDKISADELSTISEEKVIINPVAGEIGEGDVL 120
           VVAF+G+ TT + L YSG+ RVIK +S G+  + DEL TI E+ VIINPVA EI    V 
Sbjct: 61  VVAFRGNLTTTFSLSYSGDERVIKVISKGEVFTQDELETIGEKNVIINPVANEIKSEHVE 120

Query: 121 IFKKPCLDLQGFVRELRKDGLVTLKEIDGEFLENASIVHSSTEEFRMVKNLKLPDVLAVT 180
           +F++P LD+QGFVR L     V LK+I+G FLE A +VH+S EE+  ++N  +PDVLA+T
Sbjct: 121 LFRRPSLDIQGFVRNL--SWKVELKDIEGGFLEKAFVVHASKEEYSRIRNPGMPDVLAIT 178

Query: 181 NGSEEGVVITRKGKITFKPRKVDVKDPTGAGDAFLALLSYGINRYNELKRALEFALDETA 240
           NG +EG +IT+  +ITF P  V+ +DPTGAGD FLALL+YGIN+Y +L+ AL FA+ ETA
Sbjct: 179 NGVKEGKIITKDEEITFMPEVVNTQDPTGAGDCFLALLTYGINKY-KLQEALNFAIKETA 237

Query: 241 KFLK 244
           +FL+
Sbjct: 238 EFLR 241


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.138    0.384 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99291975
Number of Sequences: 2977
Number of extensions: 4271923
Number of successful extensions: 7414
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7410
Number of HSP's gapped (non-prelim): 2
length of query: 261
length of database: 189,106,746
effective HSP length: 57
effective length of query: 204
effective length of database: 154,992,987
effective search space: 31618569348
effective search space used: 31618569348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 164 (68.3 bits)