BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1969 (dppA-4) DE:DIPEPTIDE TRANSPORT PROTEIN DPPA
(278 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75177 dipeptide transport protein dppa PAB1969 - Pyrococcu... 552 e-156
pir||F71036 probable dipeptide transport protein dppA - Pyrococc... 467 e-131
pir||A72722 probable dipeptide transport protein APE0314 - Aerop... 205 7e-52
pir||F75347 probable peptide ABC transporter - Deinococcus radio... 116 3e-25
gb|AAB39857.1| (U81371) DPPA [Bacillus methanolicus] 106 3e-22
pir||S16647 sporulation dipeptide ABC transporter dppA - Bacillu... 96 3e-19
sp|P26902|DPPA_BACSU DIPEPTIDE TRANSPORT PROTEIN DPPA >gi|263201... 96 6e-19
emb|CAA40002.1| (X56678) dciAA [Bacillus subtilis] 95 8e-19
pir||T35973 probable transport associated protein - Streptomyces... 93 4e-18
>pir||G75177 dipeptide transport protein dppa PAB1969 - Pyrococcus abyssi
(strain Orsay) >gi|5458012|emb|CAB49502.1| (AJ248284)
DIPEPTIDE TRANSPORT PROTEIN DPPA [Pyrococcus abyssi]
Length = 278
Score = 552 bits (1406), Expect = e-156
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH
Sbjct: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
Query: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDTNLAIFLGYHAKAGTGYATFDHTYSGA 120
GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDTNLAIFLGYHAKAGTGYATFDHTYSGA
Sbjct: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDTNLAIFLGYHAKAGTGYATFDHTYSGA 120
Query: 121 TIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDEALREDMKLTPWIEFVPFKRASGRY 180
TIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDEALREDMKLTPWIEFVPFKRASGRY
Sbjct: 121 TIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDEALREDMKLTPWIEFVPFKRASGRY 180
Query: 181 SAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLPFV 240
SAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLPFV
Sbjct: 181 SAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLPFV 240
Query: 241 ERVNGKEIKYTANSVEEAYKVFEVLVFAAAGVSYITSR 278
ERVNGKEIKYTANSVEEAYKVFEVLVFAAAGVSYITSR
Sbjct: 241 ERVNGKEIKYTANSVEEAYKVFEVLVFAAAGVSYITSR 278
>pir||F71036 probable dipeptide transport protein dppA - Pyrococcus horikoshii
>gi|3258011|dbj|BAA30694.1| (AP000006) 278aa long
hypothetical dipeptide transport protein dppA
[Pyrococcus horikoshii]
Length = 278
Score = 467 bits (1188), Expect = e-131
Identities = 228/278 (82%), Positives = 258/278 (92%)
Query: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
M+AFISIDLEGLPYIVSREHLFVKG+LY EAR+IAT++VK AEEL+RLGFEEVIVADSH
Sbjct: 1 MKAFISIDLEGLPYIVSREHLFVKGSLYKEAREIATRLVKTAAEELNRLGFEEVIVADSH 60
Query: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDTNLAIFLGYHAKAGTGYATFDHTYSGA 120
GPMVNVIPEE+P+FVSLVRGFPRPLSMVAF K++++AIFLGYHAKAGT ATFDHTYSG+
Sbjct: 61 GPMVNVIPEEMPEFVSLVRGFPRPLSMVAFAKNSDIAIFLGYHAKAGTSRATFDHTYSGS 120
Query: 121 TIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDEALREDMKLTPWIEFVPFKRASGRY 180
TIDKVIIN EVSEFLMNAMLLGEW +PVG+LGGDEALRED KLTPWIEFVPFKRASGRY
Sbjct: 121 TIDKVIINDIEVSEFLMNAMLLGEWNIPVGVLGGDEALREDTKLTPWIEFVPFKRASGRY 180
Query: 181 SAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLPFV 240
S+ISPS+K+IEEELR ++RAV KL RGEL+PL+ + P++V+VRFLNSAYAEVAELLPFV
Sbjct: 181 SSISPSLKKIEEELRGAIQRAVNKLKRGELRPLKTEYPIKVRVRFLNSAYAEVAELLPFV 240
Query: 241 ERVNGKEIKYTANSVEEAYKVFEVLVFAAAGVSYITSR 278
ER +GKEI+Y A S+EEAYK+FE LVFAAAGVSYITSR
Sbjct: 241 ERTSGKEIQYVAKSMEEAYKIFEALVFAAAGVSYITSR 278
>pir||A72722 probable dipeptide transport protein APE0314 - Aeropyrum pernix
(strain K1) >gi|5103953|dbj|BAA79269.1| (AP000059) 286aa
long hypothetical dipeptide transport protein [Aeropyrum
pernix]
Length = 286
Score = 205 bits (515), Expect = 7e-52
Identities = 108/270 (40%), Positives = 166/270 (61%), Gaps = 4/270 (1%)
Query: 2 RAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSHG 61
R F+S+D EG+PY SR + + LY E R+I T++ + EE+ G E V+VADSHG
Sbjct: 14 RFFVSVDAEGMPYSPSRVMMMPRDPLYGELRRIMTRVTNIVVEEVFASGAEGVVVADSHG 73
Query: 62 PMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDTNLAIFLGYHAKAGTGYATFDHTYSGAT 121
MVN+ P EI D V LVRGFPRPL+MV + A+F+GYH +G HTY+G
Sbjct: 74 SMVNLDPFEIDDRVELVRGFPRPLAMVYGARGCAAALFIGYHGSPQSG-GVLGHTYAGRI 132
Query: 122 IDKVIINGTE-VSEFLMNAMLLGEWGVPVGLLGGDEALREDMKL-TPWIEFVPFKRASGR 179
+ +V ++G+E +E+L+N LGE GVPV L+ GD L ++++ TPW FVP K+ +
Sbjct: 133 VQRVRVHGSEAATEYLLNTYALGEMGVPVVLVAGDSVLEDEVRRHTPWAVFVPLKKPASS 192
Query: 180 YSAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLPF 239
+ ++P +R+E+ LR V+ AV + +PL+ +P ++V +A+VAEL P
Sbjct: 193 LADVTPPWQRVEKSLRSAVREAVAARSLERAEPLKPAEP-WIEVELKRPWHADVAELFPC 251
Query: 240 VERVNGKEIKYTANSVEEAYKVFEVLVFAA 269
VER++G ++ + +S + YK+ E +V A+
Sbjct: 252 VERLDGVTVRLSCSSFVDNYKLLEGIVIAS 281
>pir||F75347 probable peptide ABC transporter - Deinococcus radiodurans (strain
R1) >gi|6459619|gb|AAF11394.1|AE002024_5 (AE002024)
peptide ABC transporter, putative [Deinococcus
radiodurans]
Length = 283
Score = 116 bits (288), Expect = 3e-25
Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 22/284 (7%)
Query: 1 MRAFISIDLEGLPYIVSREHL-------FVKGALYNEARKIATKIVKVTAEELHRLGFEE 53
M+ IS+D+EG+ + S + V GA Y +AR T+ AE G +
Sbjct: 1 MKVVISVDMEGVCGVASWVQVSPPEFGGLVNGAEYEKARVQMTREAAAAAEGAFAAGASD 60
Query: 54 VIVADSHGPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDTNLA--IFLGYHAKAGTGYA 111
V+V DSH M N++PE +P+ V G +PLSMV ++ + + +G HA+AG+
Sbjct: 61 VLVNDSHDTMRNLLPELLPERVRYTTGNDKPLSMVQGVQEEGVGALLLVGSHARAGSMRG 120
Query: 112 TFDHTYSGATIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDEALREDMK--LTPWIE 169
HT++G I V I G + E+ +NA+L G +GVPV GD+ +++ L +E
Sbjct: 121 PLAHTWNG-FIRNVRIGGVDTGEYGLNALLAGHYGVPVAFASGDDVAMGEIRAELGEGVE 179
Query: 170 FVPFKRASGRYSAI----SPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRF 225
V K ++AI + +++RI GV+RA L P + P ++ F
Sbjct: 180 TVAVKEGLSSFAAIHLHPAEAVRRIRAGAEAGVRRA------ASLAPYTTRWPAPCQLSF 233
Query: 226 LNSAYAEVAELLPFVERVNGKEIKYTANSVEEAYKVFEVLVFAA 269
+ A A+ E +P V RV+ + + + + ++ F +L A
Sbjct: 234 DHQARADACERVPGVTRVDAVTVGWESENAYHLFQTFRLLAKVA 277
>gb|AAB39857.1| (U81371) DPPA [Bacillus methanolicus]
Length = 274
Score = 106 bits (262), Expect = 3e-22
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 11/279 (3%)
Query: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
M+ +IS+D+EG+ ++ + Y+ +R I T+ G EV+V DSH
Sbjct: 1 MKLYISVDMEGITGLIDHTQVDSSKHNYDRSRLIMTEEANHVITAAFENGCSEVVVNDSH 60
Query: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDTNL--AIFLGYHAKAG-TGYATFDHTY 117
M N++ E++ L+ G +P SMV G D + AIF+GYHA+A G T +
Sbjct: 61 SKMNNLLIEKLHPETQLITGDVKPFSMVQ-GLDDSFSGAIFVGYHARASMKGVMTHSMIF 119
Query: 118 SGATIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGG-DEALREDMKLTPWIEFVPFKRA 176
+ + IN + E NA + G +GVPV ++ G D+ E +L P + K A
Sbjct: 120 G---VRHMYINDVAIGELGFNAYVAGYYGVPVIMVAGDDQTALEAERLIPNVTTAVVKEA 176
Query: 177 SGRYSAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAEL 236
R SA S + + + L+E K + NR +KPL +++ F N AE A L
Sbjct: 177 ISRSSAKSLTPAKAGQLLKE--KTVLALQNRESVKPLTPPDNPLLRIEFANYGQAEWANL 234
Query: 237 LPFVERVNGKEI-KYTANSVEEAYKVFEVLVFAAAGVSY 274
+P E G I +Y A ++ EAY+ V+ A +Y
Sbjct: 235 MPGTEIEPGTTIVRYQAKNILEAYQAMLVMTELAMRTTY 273
>pir||S16647 sporulation dipeptide ABC transporter dppA - Bacillus subtilis
Length = 274
Score = 96.3 bits (236), Expect = 3e-19
Identities = 81/277 (29%), Positives = 125/277 (44%), Gaps = 7/277 (2%)
Query: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
M+ ++S+D+EG+ + + Y R I T+ E G EV+V DSH
Sbjct: 1 MKLYMSVDMEGISGLPDDTFVDSGKRNYERGRLIMTEEANYCIAEAFNSGCTEVLVNDSH 60
Query: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDT-NLAIFLGYHAKAGTGYATFDHTYSG 119
M N++ E++ L+ G +P SMV DT A+FLGYHA+A T G
Sbjct: 61 SKMNNLMVEKLHPEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSHSMIFG 120
Query: 120 ATIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDE-ALREDMKLTPWIEFVPFKRASG 178
+ IN V E +NA + G + VPV ++ GD+ A +E +L P + K+
Sbjct: 121 --VRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTIS 178
Query: 179 RYSAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLP 238
R + S + L E K A N+ ++KPL + + F N AE A L+P
Sbjct: 179 RSAVKCLSPAKAGRLLTE--KTAFALQNKDKVKPLTPPDRPVLSIEFANYGQAEWANLMP 236
Query: 239 FVERVNG-KEIKYTANSVEEAYKVFEVLVFAAAGVSY 274
E G +++ A + EAY+ V+ A S+
Sbjct: 237 GTEIKTGTTTVQFQAKDMLEAYQAMLVMTELAMRTSF 273
>sp|P26902|DPPA_BACSU DIPEPTIDE TRANSPORT PROTEIN DPPA >gi|2632013|emb|CAA05572.1|
(AJ002571) DppA [Bacillus subtilis]
>gi|2633646|emb|CAB13149.1| (Z99110) dipeptide ABC
transporter [Bacillus subtilis]
Length = 274
Score = 95.6 bits (234), Expect = 6e-19
Identities = 81/277 (29%), Positives = 125/277 (44%), Gaps = 7/277 (2%)
Query: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
M+ ++S+D+EG+ + + Y R I T+ E G EV+V DSH
Sbjct: 1 MKLYMSVDMEGISGLPDDTFVDSGKRNYERGRLIMTEEANYCIAEAFNSGCTEVLVNDSH 60
Query: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDT-NLAIFLGYHAKAGTGYATFDHTYSG 119
M N++ E++ L+ G +P SMV DT A+FLGYHA+A T G
Sbjct: 61 SKMNNLMVEKLHPEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSHSMIFG 120
Query: 120 ATIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDE-ALREDMKLTPWIEFVPFKRASG 178
+ IN V E +NA + G + VPV ++ GD+ A +E +L P + K+
Sbjct: 121 --VRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTIS 178
Query: 179 RYSAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLP 238
R + S + L E K A N+ ++KPL + + F N AE A L+P
Sbjct: 179 RSAVKCLSPAKRGRLLTE--KTAFALQNKDKVKPLTPPDRPVLSIEFANYGQAEWANLMP 236
Query: 239 FVERVNG-KEIKYTANSVEEAYKVFEVLVFAAAGVSY 274
E G +++ A + EAY+ V+ A S+
Sbjct: 237 GTEIKTGTTTVQFQAKDMLEAYQAMLVMTELAMRTSF 273
>emb|CAA40002.1| (X56678) dciAA [Bacillus subtilis]
Length = 274
Score = 95.2 bits (233), Expect = 8e-19
Identities = 80/277 (28%), Positives = 125/277 (44%), Gaps = 7/277 (2%)
Query: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
M+ ++S+D+EG+ + + Y R I T+ E G EV+V DSH
Sbjct: 1 MKLYMSVDMEGISGLPDDTFVDSGKRNYERGRLIMTEEANYCIAEAFNSGCTEVLVNDSH 60
Query: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGKDT-NLAIFLGYHAKAGTGYATFDHTYSG 119
M N++ E++ L+ G +P SMV DT A+FLGYHA+A T G
Sbjct: 61 SKMNNLMVEKLHPEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSHSMIFG 120
Query: 120 ATIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDE-ALREDMKLTPWIEFVPFKRASG 178
+ IN V E +NA + G + VPV ++ GD+ A +E +L P + K+
Sbjct: 121 --VRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTIS 178
Query: 179 RYSAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELLP 238
R + S + L E A+ N+ ++KPL + + F N AE A L+P
Sbjct: 179 RSAVKCLSPAKAGRLLTEKTPFALQ--NKDKVKPLTPPDRPVLSIEFANYGQAEWANLMP 236
Query: 239 FVERVNG-KEIKYTANSVEEAYKVFEVLVFAAAGVSY 274
E G +++ A + EAY+ V+ A S+
Sbjct: 237 GTEIKTGTTTVQFQAKDMLEAYQAMLVMTELAMRTSF 273
>pir||T35973 probable transport associated protein - Streptomyces coelicolor
>gi|4154081|emb|CAA22734.1| (AL035161) putative
transport associated protein [Streptomyces coelicolor
A3(2)]
Length = 277
Score = 92.8 bits (227), Expect = 4e-18
Identities = 75/268 (27%), Positives = 123/268 (44%), Gaps = 7/268 (2%)
Query: 1 MRAFISIDLEGLPYIVSREHLFVKGALYNEARKIATKIVKVTAEELHRLGFEEVIVADSH 60
M+ IS D+EG + + + R + T V G +EV+V ++H
Sbjct: 1 MKILISADMEGATGVTWPADVLPGTPQWERCRSMFTSDVNAAVLGFFDGGADEVLVNEAH 60
Query: 61 GPMVNVIPEEIPDFVSLVRGFPRPLSMVAFGK--DTNLAIFLGYHAKAGTGYATFDHTYS 118
M N++ E + + ++ G + LSMV + D + F+GYHA AG HTY
Sbjct: 61 WSMRNLLLERLDERTEMLTGRHKALSMVEGVQHGDVDGIAFIGYHAGAGME-GVLAHTYL 119
Query: 119 GATIDKVIINGTEVSEFLMNAMLLGEWGVPVGLLGGDEALRED-MKLTPWIEFVPFKRAS 177
+ V +N SE L+NA ++ E+GVPV L+ GD+ ED + P V K
Sbjct: 120 ANQLTGVWLNDVRASEGLLNAHVVAEYGVPVVLVTGDDVACEDALGYAPEARKVAVKDHV 179
Query: 178 GRYSAISPSMKRIEEELREGVKRAVYKLNRGELKPLEIKKPVEVKVRFLNSAYAEVAELL 237
RY+A+ + R ++R K A R E P+ P + + F A A ++
Sbjct: 180 SRYAAVCRTPARTAADIRAAAKEAAALAVRHE--PVG-GGPFTLAMEFDAEHLAAAATVV 236
Query: 238 PFVERVNGKEIKYTANSVEEAYKVFEVL 265
P V +V +++ YT ++ EA + F+ +
Sbjct: 237 PGVAQVGERKVAYTHETMFEAIRTFKAV 264
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98579784
Number of Sequences: 2977
Number of extensions: 4189882
Number of successful extensions: 10000
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9975
Number of HSP's gapped (non-prelim): 9
length of query: 278
length of database: 189,106,746
effective HSP length: 56
effective length of query: 222
effective length of database: 155,591,474
effective search space: 34541307228
effective search space used: 34541307228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)