BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1972 (PAB1972) DE:Hypothetical protein
         (118 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75177 hypothetical protein PAB1972 - Pyrococcus abyssi (st...   228  3e-59
pir||B71037 hypothetical protein PH1586 - Pyrococcus horikoshii ...   182  1e-45

>pir||C75177 hypothetical protein PAB1972 - Pyrococcus abyssi (strain Orsay)
           >gi|5458008|emb|CAB49498.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 118
           
 Score =  228 bits (574), Expect = 3e-59
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MYTIQYLAIAMIFILMGYTIFRYRLEKLELSDLIVWEAFLVILLIIAIEPIKISMEIKKI 60
           MYTIQYLAIAMIFILMGYTIFRYRLEKLELSDLIVWEAFLVILLIIAIEPIKISMEIKKI
Sbjct: 1   MYTIQYLAIAMIFILMGYTIFRYRLEKLELSDLIVWEAFLVILLIIAIEPIKISMEIKKI 60

Query: 61  FGLGRGLDALFVLTIGLAYVLLFKLYLDIDKVEREITKLNRELAIRLKEIEDKIERKP 118
           FGLGRGLDALFVLTIGLAYVLLFKLYLDIDKVEREITKLNRELAIRLKEIEDKIERKP
Sbjct: 61  FGLGRGLDALFVLTIGLAYVLLFKLYLDIDKVEREITKLNRELAIRLKEIEDKIERKP 118


>pir||B71037 hypothetical protein PH1586 - Pyrococcus horikoshii
           >gi|3258015|dbj|BAA30698.1| (AP000006) 118aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 118
           
 Score =  182 bits (457), Expect = 1e-45
 Identities = 87/118 (73%), Positives = 106/118 (89%)

Query: 1   MYTIQYLAIAMIFILMGYTIFRYRLEKLELSDLIVWEAFLVILLIIAIEPIKISMEIKKI 60
           MYTIQY+AI +I  LM Y  FR++  KLELSDLI WEAF ++LLIIA+ P++IS+EIK+I
Sbjct: 1   MYTIQYIAIIVILTLMIYAFFRHKKGKLELSDLITWEAFFIVLLIIALAPLRISIEIKRI 60

Query: 61  FGLGRGLDALFVLTIGLAYVLLFKLYLDIDKVEREITKLNRELAIRLKEIEDKIERKP 118
           FGLGRGLDALFVLTIGL Y+LLFKLYLDIDK+EREIT+LNR+++IRLKE+ED+IERKP
Sbjct: 61  FGLGRGLDALFVLTIGLTYILLFKLYLDIDKIEREITELNRKISIRLKELEDEIERKP 118


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.152    0.417 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35762394
Number of Sequences: 2977
Number of extensions: 1248049
Number of successful extensions: 5848
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5846
Number of HSP's gapped (non-prelim): 2
length of query: 118
length of database: 189,106,746
effective HSP length: 50
effective length of query: 68
effective length of database: 159,182,396
effective search space: 10824402928
effective search space used: 10824402928
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 160 (66.7 bits)