BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1973 (PAB1973) DE:Hypothetical protein
         (122 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75177 hypothetical protein PAB1973 - Pyrococcus abyssi (st...   245  2e-64
pir||C71037 hypothetical protein PH1587 - Pyrococcus horikoshii ...   235  1e-61

>pir||B75177 hypothetical protein PAB1973 - Pyrococcus abyssi (strain Orsay)
           >gi|5458007|emb|CAB49497.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 122
           
 Score =  245 bits (618), Expect = 2e-64
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MEPSEFKLNQKGIKAVLPSLEAEIMEYMWEIKEGTAGEVFEYLKKKHPEIRRSTVSILMN 60
           MEPSEFKLNQKGIKAVLPSLEAEIMEYMWEIKEGTAGEVFEYLKKKHPEIRRSTVSILMN
Sbjct: 1   MEPSEFKLNQKGIKAVLPSLEAEIMEYMWEIKEGTAGEVFEYLKKKHPEIRRSTVSILMN 60

Query: 61  RLCEKGLLTRRMDRGRGGIRYIYTITTTREEFERKVVEKIIDSLLANFREATYAYLAKKI 120
           RLCEKGLLTRRMDRGRGGIRYIYTITTTREEFERKVVEKIIDSLLANFREATYAYLAKKI
Sbjct: 61  RLCEKGLLTRRMDRGRGGIRYIYTITTTREEFERKVVEKIIDSLLANFREATYAYLAKKI 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


>pir||C71037 hypothetical protein PH1587 - Pyrococcus horikoshii
           >gi|3258016|dbj|BAA30699.1| (AP000006) 122aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 122
           
 Score =  235 bits (594), Expect = 1e-61
 Identities = 113/122 (92%), Positives = 122/122 (99%)

Query: 1   MEPSEFKLNQKGIKAVLPSLEAEIMEYMWEIKEGTAGEVFEYLKKKHPEIRRSTVSILMN 60
           MEPSEFKLNQKGIK+VLP+LEAEIMEYMW+IKEGTAGEV+EYLK+KHPEIRRSTVSILMN
Sbjct: 1   MEPSEFKLNQKGIKSVLPALEAEIMEYMWKIKEGTAGEVYEYLKQKHPEIRRSTVSILMN 60

Query: 61  RLCEKGLLTRRMDRGRGGIRYIYTITTTREEFERKVVEKIIDSLLANFREATYAYLAKKI 120
           RLCEKGLLTRRMDRGRGGI+YIYT+TTTREEFERK+VEKIIDSL+ANFREATYAYLAKKI
Sbjct: 61  RLCEKGLLTRRMDRGRGGIKYIYTVTTTREEFERKIVEKIIDSLIANFREATYAYLAKKI 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.136    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40471486
Number of Sequences: 2977
Number of extensions: 1423037
Number of successful extensions: 4044
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4042
Number of HSP's gapped (non-prelim): 2
length of query: 122
length of database: 189,106,746
effective HSP length: 55
effective length of query: 67
effective length of database: 156,189,961
effective search space: 10464727387
effective search space used: 10464727387
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)