BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1974 (htpX) DE:heat shock protein (htpX)
(265 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75177 heat shock protein (htpx) PAB1974 - Pyrococcus abyss... 520 e-147
pir||D71037 hypothetical protein PH1588 - Pyrococcus horikoshii ... 363 2e-99
pir||E81951 probable membrane-bound zinc metallopeptidase (EC 3.... 83 4e-15
pir||E81154 heat shock protein HtpX NMB0822 [imported] - Neisser... 83 4e-15
sp|O67798|HTPX_AQUAE PROBABLE PROTEASE HTPX HOMOLOG >gi|7441961|... 75 9e-13
gb|AAK42047.1| Heat shock protein (htpX-1) [Sulfolobus solfatari... 73 4e-12
sp|O58997|HTPX_PYRHO PROBABLE PROTEASE HTPX HOMOLOG >gi|7441958|... 73 4e-12
pir||A75094 heat shock protein (htpx) PAB0758 - Pyrococcus abyss... 73 5e-12
sp|O26669|HTPX_METTH PROBABLE PROTEASE HTPX HOMOLOG >gi|7428778|... 70 3e-11
pir||E82239 heat shock protein HtpX VC1117 [imported] - Vibrio c... 69 4e-11
>pir||A75177 heat shock protein (htpx) PAB1974 - Pyrococcus abyssi (strain
Orsay) >gi|5458006|emb|CAB49496.1| (AJ248284) heat shock
protein (htpX) [Pyrococcus abyssi]
Length = 265
Score = 520 bits (1325), Expect = e-147
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MLILLLLIQITILMKTLGVLNGLVVTTILLIGLILLCRFSLKMKLPKSRYSRITWEDMPW 60
MLILLLLIQITILMKTLGVLNGLVVTTILLIGLILLCRFSLKMKLPKSRYSRITWEDMPW
Sbjct: 1 MLILLLLIQITILMKTLGVLNGLVVTTILLIGLILLCRFSLKMKLPKSRYSRITWEDMPW 60
Query: 61 LYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNSIVLSAGLFEILDRDEILAVAAHEIG 120
LYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNSIVLSAGLFEILDRDEILAVAAHEIG
Sbjct: 61 LYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNSIVLSAGLFEILDRDEILAVAAHEIG 120
Query: 121 HIKNGDTFLFPLLRYGKYVMGIMTLITVFIAKNSLTSLISVGVFLTYMVTLLRFLRKREF 180
HIKNGDTFLFPLLRYGKYVMGIMTLITVFIAKNSLTSLISVGVFLTYMVTLLRFLRKREF
Sbjct: 121 HIKNGDTFLFPLLRYGKYVMGIMTLITVFIAKNSLTSLISVGVFLTYMVTLLRFLRKREF 180
Query: 181 KADRIALQIAEVPYALKTALEELKFYEESMLGKDTPLPTIQPSLDRKENNYNQQTILFST 240
KADRIALQIAEVPYALKTALEELKFYEESMLGKDTPLPTIQPSLDRKENNYNQQTILFST
Sbjct: 181 KADRIALQIAEVPYALKTALEELKFYEESMLGKDTPLPTIQPSLDRKENNYNQQTILFST 240
Query: 241 HPTYEERIAKIMSIVDMYRRLELLK 265
HPTYEERIAKIMSIVDMYRRLELLK
Sbjct: 241 HPTYEERIAKIMSIVDMYRRLELLK 265
>pir||D71037 hypothetical protein PH1588 - Pyrococcus horikoshii
>gi|3258017|dbj|BAA30700.1| (AP000006) 264aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 264
Score = 363 bits (921), Expect = 2e-99
Identities = 178/264 (67%), Positives = 219/264 (82%), Gaps = 1/264 (0%)
Query: 1 MLILLLLIQITILMKTLGVLNGLVVTTILLIGLILLCRFSLKMKLPKSRYSRITWEDMPW 60
MLI+L LIQ+ +++K LG L GL + L+ GL +LC+ SLK+KLP+++YS++TWEDMPW
Sbjct: 1 MLIILFLIQMILIVKALG-LKGLFIFLALIFGLFVLCKVSLKVKLPRNKYSKVTWEDMPW 59
Query: 61 LYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNSIVLSAGLFEILDRDEILAVAAHEIG 120
LYDG+ARMAN+ARI TP IYIEDNPIP AYSFQNSIVLSAGL EIL+ +E+LAVAAHEIG
Sbjct: 60 LYDGVARMANKARISTPNIYIEDNPIPTAYSFQNSIVLSAGLLEILNEEEVLAVAAHEIG 119
Query: 121 HIKNGDTFLFPLLRYGKYVMGIMTLITVFIAKNSLTSLISVGVFLTYMVTLLRFLRKREF 180
HIKNGDT LFPLLRYGKY+MGI+T I V A +T ++S VF+ Y +LL+FLRKREF
Sbjct: 120 HIKNGDTVLFPLLRYGKYIMGIITAIIVIFATGFITKVVSFLVFVIYAFSLLKFLRKREF 179
Query: 181 KADRIALQIAEVPYALKTALEELKFYEESMLGKDTPLPTIQPSLDRKENNYNQQTILFST 240
ADR+ALQIAEVPYALK+ALEELKFYEE++ K+ PLPTIQPS+ R+E Q L ST
Sbjct: 180 LADRVALQIAEVPYALKSALEELKFYEEALKTKEMPLPTIQPSIRREEKREPQIFPLPST 239
Query: 241 HPTYEERIAKIMSIVDMYRRLELL 264
HP+Y+ERIA+I++IV+MYRRLE L
Sbjct: 240 HPSYDERIARIIAIVEMYRRLEFL 263
>pir||E81951 probable membrane-bound zinc metallopeptidase (EC 3.4.24.-) NMA1031
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7379733|emb|CAB84300.1| (AL162754) putative
membrane-bound zinc metallopeptidase [Neisseria
meningitidis Z2491]
Length = 279
Score = 82.7 bits (201), Expect = 4e-15
Identities = 72/279 (25%), Positives = 130/279 (45%), Gaps = 39/279 (13%)
Query: 4 LLLLIQITILMKTLGVLN----GLVVTTILLIGL------ILLCRFSLKMKLPKSRYSRI 53
+ +L+ I I++ LG+ + G ++ ++G +L+ +F K +
Sbjct: 12 IAVLVVINIVLAVLGINSQGGTGSLLAYSAVVGFTGSIISLLMSKFIAKQSVGAEVIDTP 71
Query: 54 TWEDMPWLYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNS-----IVLSAGLFEILDR 108
E+ WL + + A + ++TP + I +P P A++ S I +S GL + + R
Sbjct: 72 RTEEEAWLLNTVEAQARQWNLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLDHMTR 131
Query: 109 DEILAVAAHEIGHIKNGDTFLFPLLR--YGKYVMGIMTLITVFIAKNSLTSLISVGVFLT 166
DE+ AV AHE+ H+ NGD L++ +V+ + +I IA+N+ S FL
Sbjct: 132 DEVEAVLAHEMAHVGNGDMVTLTLIQGVVNTFVVFLSRIIANLIARNNDGSQSQGTYFLV 191
Query: 167 YMV-----------TLLRFLRKREFKADRIALQIAEVPYALKTALEELKFYEESMLGKDT 215
MV ++ F R+RE++AD A ++ P + +AL+ LK G
Sbjct: 192 SMVFQILFGFLASLIVMWFSRQREYRADAGAAKLVGAPKMI-SALQRLK-------GNPV 243
Query: 216 PLPTIQPSLDRKENNYNQQTILFSTHPTYEERIAKIMSI 254
LP ++ + + L STHP+ + RIA++ S+
Sbjct: 244 DLPEEMNAMGIAGDTRDS---LLSTHPSLDNRIARLKSL 279
>pir||E81154 heat shock protein HtpX NMB0822 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7226057|gb|AAF41235.1|
(AE002435) heat shock protein HtpX [Neisseria
meningitidis MC58]
Length = 347
Score = 82.7 bits (201), Expect = 4e-15
Identities = 72/279 (25%), Positives = 130/279 (45%), Gaps = 39/279 (13%)
Query: 4 LLLLIQITILMKTLGVLN----GLVVTTILLIGL------ILLCRFSLKMKLPKSRYSRI 53
+ +L+ I I++ LG+ + G ++ ++G +L+ +F K +
Sbjct: 80 IAVLVVINIVLAVLGINSRGGTGSLLAYSAVVGFTGSIISLLMSKFIAKQSVGAEVIDTP 139
Query: 54 TWEDMPWLYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNS-----IVLSAGLFEILDR 108
E+ WL + + A + ++TP + I +P P A++ S I +S GL + + R
Sbjct: 140 RTEEEAWLLNTVEAQARQWNLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLDHMTR 199
Query: 109 DEILAVAAHEIGHIKNGDTFLFPLLR--YGKYVMGIMTLITVFIAKNSLTSLISVGVFLT 166
DE+ AV AHE+ H+ NGD L++ +V+ + +I IA+N+ S FL
Sbjct: 200 DEVEAVLAHEMAHVGNGDMVTLTLIQGVVNTFVVFLSRIIANLIARNNDGSQSQGTYFLV 259
Query: 167 YMV-----------TLLRFLRKREFKADRIALQIAEVPYALKTALEELKFYEESMLGKDT 215
MV ++ F R+RE++AD A ++ P + +AL+ LK G
Sbjct: 260 SMVFQILFGFLASLIVMWFSRQREYRADAGAAKLVGAPKMI-SALQRLK-------GNPV 311
Query: 216 PLPTIQPSLDRKENNYNQQTILFSTHPTYEERIAKIMSI 254
LP ++ + + L STHP+ + RIA++ S+
Sbjct: 312 DLPEEMNAMGIAGDTRDS---LLSTHPSLDNRIARLKSL 347
>sp|O67798|HTPX_AQUAE PROBABLE PROTEASE HTPX HOMOLOG >gi|7441961|pir||B70471 heat shock
protein X - Aquifex aeolicus >gi|2984218|gb|AAC07747.1|
(AE000766) heat shock protein X [Aquifex aeolicus]
Length = 302
Score = 74.9 bits (181), Expect = 9e-13
Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 32/271 (11%)
Query: 12 ILMKTLGVLNGLVVTTILLI--GLILLCRFSLKMKLPKSRYS--RITWEDMPWLYDGIAR 67
+LM G++ G I LI G + + K+ S Y I +E+ PWL+ +
Sbjct: 27 LLMAIGGIIGGTAGMLIALIIAGFMNFMSYWFSDKIVLSMYGAREIPYEEAPWLHQIVEE 86
Query: 68 MANRARIQTPTIYIEDNPIPIAYSFQN-----SIVLSAGLFEILDRDEILAVAAHEIGHI 122
+A RA + P IY+ P A++ ++ ++ G+ EILD++E+ V AHE+ HI
Sbjct: 87 LARRANMPKPKIYLVPMEQPNAFATGRGPGHAAVAVTRGILEILDQEELKGVLAHELAHI 146
Query: 123 KNGDTFLFPLLRYGKYVMGIMTLITVF------IAKN-------------SLTSLISVGV 163
KN D + + +G + + + + +N ++ +I V +
Sbjct: 147 KNRDVLVATIAATIAGAIGFLANMAQWALFFGGLNRNEEEEGGGFAEMIGAILMIIIVPI 206
Query: 164 FLTYMVTLLRFLRKREFKADRIALQIAEVPYALKTALEELKFYEESMLGKDTPLPTIQPS 223
T + L R RE+ AD +I P AL AL++++ Y + P T
Sbjct: 207 IAT--IVQLAISRSREYFADETGAKICGCPVALARALKKIEEYVMQVPANVNP-GTAHLF 263
Query: 224 LDRKENNYNQQTILFSTHPTYEERIAKIMSI 254
++ +L STHP+ E+RI ++ +
Sbjct: 264 IENPLKGGGIMELL-STHPSTEKRIQRLCEL 293
>gb|AAK42047.1| Heat shock protein (htpX-1) [Sulfolobus solfataricus]
Length = 311
Score = 73.0 bits (176), Expect = 4e-12
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Query: 60 WLYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNS-----IVLSAGLFEILDRDEILAV 114
WLY+ + R+A ++I+ P +++ D P P A+++ N + ++ L ILD DE+ AV
Sbjct: 75 WLYNLVRRIAEESKIKPPRVFVIDAPYPNAFAYGNRLGGMRVGITLPLLNILDVDELTAV 134
Query: 115 AAHEIGHIKNGDTFLFPLLRYGKYVMG-IMTL------ITVFIAKNSLTSLISVGV---- 163
AHE+GHIK+ D + + V+G I TL + +F+A + + L ++
Sbjct: 135 IAHEVGHIKHRDVEIGMTIGLIPTVLGYISTLLMNFGYLALFLAADEIELLFAIAALAIG 194
Query: 164 FLTYMVT------LLRFLRKREFKAD-RIALQIAEVPYALKTALEELKFYEESM 210
F+ ++VT +L F R RE AD L + E AL TAL +++ Y +++
Sbjct: 195 FVIFVVTFILQIFVLWFNRLRESYADYNSFLVLGEGSKALATALAKIEIYMQNI 248
>sp|O58997|HTPX_PYRHO PROBABLE PROTEASE HTPX HOMOLOG >gi|7441958|pir||C71070 probable
heat shock protein - Pyrococcus horikoshii
>gi|3257674|dbj|BAA30357.1| (AP000005) 292aa long
hypothetical heat shock protein [Pyrococcus horikoshii]
Length = 292
Score = 73.0 bits (176), Expect = 4e-12
Identities = 73/282 (25%), Positives = 126/282 (43%), Gaps = 43/282 (15%)
Query: 5 LLLIQITILMKTLGVLNG-----LVVTTILLIGLILLCRFSLKMKLPKSRYSRITWEDMP 59
+L+ +T+++ +G L G ++ T+ L ++ FS + L ++ E+ P
Sbjct: 14 ILMTLLTVVLVGIGYLLGGTGGMIIAFTLALFMNLISYWFSDSIVLNWYNARIVSEEEAP 73
Query: 60 WLYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNS-----IVLSAGLFEILDRDEILAV 114
L+ + ++A +A I P + I +P A++ S + ++ GL ++L++DE+ V
Sbjct: 74 ELHYIVEKLARQAGIPKPRVAIVPTMVPNAFATGRSPRNAVVAVTEGLLQLLNKDELEGV 133
Query: 115 AAHEIGHIKNGDTFLFPLLRYGKYVMGIMTLITVFIA-------------KNSLTSLISV 161
AHEI HIKN DT + + + G + ++ F S+ LI
Sbjct: 134 IAHEISHIKNRDTLIQTI---AAVLAGAIMILVDFARWSLWFGAYDDERDSGSVIGLILA 190
Query: 162 GVFLTYMVTLLRFL--RKREFKADRIALQIAEVPYALKTAL---EELKFYEESMLGKDTP 216
+ TL++ R RE+ AD +I+ P+AL +AL EE Y G
Sbjct: 191 IILAPLAATLIQLAISRSREYLADETGARISGKPHALASALMKIEEAVRYRPLRRGNPAT 250
Query: 217 --LPTIQP--SLDRKENNYNQQTILFSTHPTYEERIAKIMSI 254
+ I P +D E LFSTHP E+RI ++ I
Sbjct: 251 AHMFIINPFRGIDFAE--------LFSTHPPTEKRIERLRKI 284
>pir||A75094 heat shock protein (htpx) PAB0758 - Pyrococcus abyssi (strain
Orsay) >gi|5458566|emb|CAB50054.1| (AJ248286) heat shock
protein (htpX) [Pyrococcus abyssi]
Length = 289
Score = 72.6 bits (175), Expect = 5e-12
Identities = 75/279 (26%), Positives = 126/279 (44%), Gaps = 37/279 (13%)
Query: 5 LLLIQITILMKTLGVLNG-----LVVTTILLIGLILLCRFSLKMKLPKSRYSRITWEDMP 59
+L+ +T L+ +G L G ++ TI L ++ FS + L ++ E+ P
Sbjct: 11 VLMAFLTALLVGIGYLIGGRGGMIIAFTIALFMNLISYWFSDSIVLSWYNARIVSEEEAP 70
Query: 60 WLYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNS-----IVLSAGLFEILDRDEILAV 114
L+ + ++A +A I P + I +P A++ + ++ GL +L+RDE+ V
Sbjct: 71 ELHYIVEKLARQAGIPKPKVAIVPTMVPNAFATGRGPGNAVVAVTEGLLHLLNRDELEGV 130
Query: 115 AAHEIGHIKNGDTFLFPLLRYGKYVMGIMTLITVFIA-------------KNSLTSLISV 161
AHEI HIKN DT + L + G + ++ F S+ LI
Sbjct: 131 IAHEISHIKNRDTLIQTL---AAVLAGAIMILVDFARWSLWFGAYDDERDSGSVIGLILA 187
Query: 162 GVFLTYMVTLLRFL--RKREFKADRIALQIAEVPYALKTALEELKFYEESMLGKDTPLPT 219
V TL++ R RE+ AD +I+ P+AL +AL ++ EE++ + PL
Sbjct: 188 IVLAPLAATLIQLAISRSREYLADETGARISGKPHALASALMKI---EEAI--RYRPLRR 242
Query: 220 IQPSLDRK--ENNYNQQTI--LFSTHPTYEERIAKIMSI 254
P+ N + LFSTHP E+RI ++ I
Sbjct: 243 GNPATAHMFIVNPFRGVDFAELFSTHPPTEKRIERLRKI 281
>sp|O26669|HTPX_METTH PROBABLE PROTEASE HTPX HOMOLOG >gi|7428778|pir||C69175 heat shock
protein X - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621646|gb|AAB85075.1| (AE000839)
heat shock protein X [Methanobacterium
thermoautotrophicum]
Length = 258
Score = 69.9 bits (168), Expect = 3e-11
Identities = 53/213 (24%), Positives = 110/213 (50%), Gaps = 12/213 (5%)
Query: 1 MLILLLLIQITILMKTLGVLNGLVVTTILLIGLILLCRFSLKMKLPKSRYS--RITWEDM 58
+L+ L+ I +++ ++ L G + +L G+I L ++ + K+ + + ++ +
Sbjct: 24 VLLFGLIYAILMVVGSILGLGGPLFYALLGFGVIFL-QYLISPKIVELTMNVHYVSEAEA 82
Query: 59 PWLYDGIARMANRARIQTPTIYIEDNPIPIAYSFQNS-----IVLSAGLFEILDRDEILA 113
P L+ + +A RA I P + I + +P A++F + + ++ G+ +LD +E+ A
Sbjct: 83 PRLHAMVDELARRAGIPKPMVGIAEIALPNAFAFGRTKADGRVCVTRGILNLLDEEELRA 142
Query: 114 VAAHEIGHIKNGDTFLFPLLRYGKYVMGIMTLITVFIAKNSLTSLISVGVFLTYMVTLLR 173
V HEI HIK+ D + L+ + + TVF +++ +L+ + + Y + L
Sbjct: 143 VLGHEISHIKHSDMIVMTLVSAVPLICYYIFWSTVF-SRDDEANLVGIAALIAYFIGQLI 201
Query: 174 FL---RKREFKADRIALQIAEVPYALKTALEEL 203
L R RE+ AD+ +++I P+ L +AL +L
Sbjct: 202 VLFISRTREYYADQGSVEIGGQPHKLASALYKL 234
>pir||E82239 heat shock protein HtpX VC1117 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9655588|gb|AAF94276.1| (AE004192)
heat shock protein HtpX [Vibrio cholerae]
Length = 287
Score = 69.5 bits (167), Expect = 4e-11
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 44/223 (19%)
Query: 60 WLYDGIARMANRARIQTPTIYIEDNPIPIAYSF-----QNSIVLSAGLFEILDRDEILAV 114
WL + + R AN+A I PT+ I D P A++ + + +S GL + RDE AV
Sbjct: 81 WLLETVRRQANQAGIGMPTVAIYDAPDMNAFATGAKRDDSLVAVSTGLLHNMTRDEAEAV 140
Query: 115 AAHEIGHIKNGDTFLFPLLRYGKYVMGIMTLITVFIAK---NSLTS-----------LIS 160
AHE+ HI NGD L++ G++ +F+++ N + S ++
Sbjct: 141 LAHEVSHIANGDMVTMTLMQ------GVVNTFVIFLSRFIANIVASRDSEEGEGSNMMVY 194
Query: 161 VGV---------FLTYMVTLLRFLRKREFKADRIALQIAEVPYALKTALEELKFYEESML 211
GV FL +T+ + R REF AD A Q+ + + ALE LK +ES L
Sbjct: 195 FGVSMVLELVFGFLASFITMW-YSRHREFHADAGAAQLVG-KHKMIAALERLKMGQESHL 252
Query: 212 GKDTPLPTIQPSLDRKENNYNQQTILFSTHPTYEERIAKIMSI 254
I E L THP E+RIA + ++
Sbjct: 253 EGSMMAFGITGKRSLSE--------LMMTHPPLEKRIAALRNM 287
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.143 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87592826
Number of Sequences: 2977
Number of extensions: 3451804
Number of successful extensions: 11537
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11518
Number of HSP's gapped (non-prelim): 10
length of query: 265
length of database: 189,106,746
effective HSP length: 55
effective length of query: 210
effective length of database: 156,189,961
effective search space: 32799891810
effective search space used: 32799891810
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)