BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1975 (PAB1975) DE:dCMP deaminase, putative
(182 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75176 probable dCMP deaminase PAB1975 - Pyrococcus abyssi ... 373 e-103
pir||E71037 probable deoxycytidylate deaminase - Pyrococcus hori... 358 2e-98
emb|CAC11457.1| (AL445063) probable dCMP deaminase [Thermoplasma... 146 2e-34
gi|11499353 dCMP deaminase, putative [Archaeoglobus fulgidus] >g... 140 9e-33
pir||B72380 hypothetical protein TM0404 - Thermotoga maritima (s... 139 3e-32
dbj|BAB05053.1| (AP001511) late competence operon required for D... 130 1e-29
sp|P32393|CME2_BACSU COME OPERON PROTEIN 2 >gi|541404|pir||S3986... 128 4e-29
pir||E71342 probable deoxycytidylate deaminase - syphilis spiroc... 121 6e-27
gb|AAA34561.1| (M13010) dCMP deaminase [Saccharomyces cerevisiae] 104 9e-22
gi|6321938 dCMP deaminase; Dcd1p [Saccharomyces cerevisiae] >gi|... 104 9e-22
pir||T31322 dCMP deaminase (EC 3.5.4.12) - Cenarchaeum symbiosum... 93 2e-18
gb|AAC62690.1| (AF083071) dCMP deaminase [Cenarchaeum symbiosum] 90 2e-17
gi|9632715 dCMP deaminase [Bacteriophage T4] >gi|118398|sp|P1600... 88 8e-17
pir||T40152 probable deoxycytidylate deaminase - fission yeast ... 87 1e-16
sp|P00814|DCTD_BPT2 DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE) >... 85 7e-16
gi|9630421 putative deoxycytidinylate deaminase; gp36.1 [Mycobac... 80 2e-14
gb|AAD45277.1|AF152114_5 (AF152114) dihydrofolate reductase/deox... 80 2e-14
sp|P30648|DCTD_CAEEL PROBABLE DEOXYCYTIDYLATE DEAMINASE (DCMP DE... 68 1e-10
>pir||H75176 probable dCMP deaminase PAB1975 - Pyrococcus abyssi (strain Orsay)
>gi|5458005|emb|CAB49495.1| (AJ248284) dCMP deaminase,
putative [Pyrococcus abyssi]
Length = 182
Score = 373 bits (948), Expect = e-103
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MKIEIVLDKEKAERIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYN 60
MKIEIVLDKEKAERIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYN
Sbjct: 1 MKIEIVLDKEKAERIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYN 60
Query: 61 GAPRNMDHCIDVGCIMVDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKL 120
GAPRNMDHCIDVGCIMVDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKL
Sbjct: 61 GAPRNMDHCIDVGCIMVDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKL 120
Query: 121 LINAGIKEIVYEEMYPNEVTEMLLKEAQEKGLIKIRQFKLSKERVKEFLEELFPEFCGCE 180
LINAGIKEIVYEEMYPNEVTEMLLKEAQEKGLIKIRQFKLSKERVKEFLEELFPEFCGCE
Sbjct: 121 LINAGIKEIVYEEMYPNEVTEMLLKEAQEKGLIKIRQFKLSKERVKEFLEELFPEFCGCE 180
Query: 181 ED 182
ED
Sbjct: 181 ED 182
>pir||E71037 probable deoxycytidylate deaminase - Pyrococcus horikoshii
>gi|3258018|dbj|BAA30701.1| (AP000006) 182aa long
hypothetical deoxycytidylate deaminase [Pyrococcus
horikoshii]
Length = 182
Score = 358 bits (910), Expect = 2e-98
Identities = 174/177 (98%), Positives = 177/177 (99%)
Query: 1 MKIEIVLDKEKAERIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYN 60
MK+EIVLDKEKAE+IKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYN
Sbjct: 1 MKVEIVLDKEKAEKIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYN 60
Query: 61 GAPRNMDHCIDVGCIMVDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKL 120
GAPRNMDHCIDVGCIMVDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKL
Sbjct: 61 GAPRNMDHCIDVGCIMVDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKL 120
Query: 121 LINAGIKEIVYEEMYPNEVTEMLLKEAQEKGLIKIRQFKLSKERVKEFLEELFPEFC 177
LINAGIKEIVYEEMYPNEVTEMLLKEAQEKGLIKIRQFKLS+ERVKEFLEELFPEFC
Sbjct: 121 LINAGIKEIVYEEMYPNEVTEMLLKEAQEKGLIKIRQFKLSRERVKEFLEELFPEFC 177
>emb|CAC11457.1| (AL445063) probable dCMP deaminase [Thermoplasma acidophilum]
Length = 170
Score = 146 bits (364), Expect = 2e-34
Identities = 78/163 (47%), Positives = 103/163 (62%), Gaps = 12/163 (7%)
Query: 19 RPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVD 78
RPT DEYFM +A L + R C R +VGAV VKD +LATGYNG P HC VGCI D
Sbjct: 6 RPTWDEYFMRMAYLAASRTNCIRRKVGAVIVKDRNVLATGYNGPPSGTAHCDVVGCIRED 65
Query: 79 -----GHCH---RAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIKEIV 130
G H R +HAEQN I AA G+S++ +T+YVT PC C K+++NA IKEIV
Sbjct: 66 LKVPSGERHELCRGLHAEQNAIIQAAVHGVSIKDSTIYVTTHPCVVCSKMIMNAQIKEIV 125
Query: 131 YEEMYPNEVTEMLLKEAQEKGLIKIRQFKLSKERVKEFLEELF 173
Y E YP+E+ E++L E+ +K+R+F L ++ VK + E +
Sbjct: 126 YAEGYPDELAELMLLESD----VKVRKFTLPEQEVKAMIGEFY 164
>gi|11499353 dCMP deaminase, putative [Archaeoglobus fulgidus]
>gi|7448896|pir||C69470 dCMP deaminase homolog -
Archaeoglobus fulgidus >gi|2648787|gb|AAB89487.1|
(AE000981) dCMP deaminase, putative [Archaeoglobus
fulgidus]
Length = 157
Score = 140 bits (350), Expect = 9e-33
Identities = 75/137 (54%), Positives = 92/137 (66%), Gaps = 8/137 (5%)
Query: 19 RPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCI--- 75
RPT DEYFM IA +V+ R+TC R VGAV VKD ILATGYNGAP + HC +VGC+
Sbjct: 3 RPTLDEYFMEIASVVAKRSTCLRQHVGAVIVKDKRILATGYNGAPSGLPHCEEVGCLRDR 62
Query: 76 --MVDGHCH---RAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIKEIV 130
+ G R VHAEQN I AA+ GIS++G TLY TH PC TC K++INAGIK +V
Sbjct: 63 MSVPSGERQELCRGVHAEQNAIIQAAKFGISVDGGTLYSTHCPCITCAKIIINAGIKRVV 122
Query: 131 YEEMYPNEVTEMLLKEA 147
Y + Y ++ LL+EA
Sbjct: 123 YGKEYADKNGLKLLEEA 139
>pir||B72380 hypothetical protein TM0404 - Thermotoga maritima (strain MSB8)
>gi|4980909|gb|AAD35489.1|AE001720_3 (AE001720)
deoxycytidylate deaminase, putative [Thermotoga
maritima]
Length = 201
Score = 139 bits (346), Expect = 3e-32
Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 8/152 (5%)
Query: 2 KIEIVLDKEKAERIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNG 61
++E L+ K E+ R + D YFM IA++VS R+TC +VGAV VKD ILATGYN
Sbjct: 36 RLEEYLNNLKIEKKPDSRESWDSYFMRIARMVSERSTCVHRKVGAVIVKDHRILATGYNQ 95
Query: 62 APRNMDHCIDVGCIMVDGHCHR--------AVHAEQNVIAMAARKGISLEGATLYVTHFP 113
P HC ++GCI D + A+HAEQN + AA+ GI++ GAT+YVTH P
Sbjct: 96 PPSKFPHCNEIGCIRDDLEINSGEHQEICYALHAEQNALMQAAKFGIAVNGATIYVTHKP 155
Query: 114 CDTCLKLLINAGIKEIVYEEMYPNEVTEMLLK 145
C C +L++NAGIK +VYE+ YP+ +T+ K
Sbjct: 156 CSICARLIVNAGIKRVVYEKDYPDPLTDFFFK 187
>dbj|BAB05053.1| (AP001511) late competence operon required for DNA binding and
uptake [Bacillus halodurans]
Length = 188
Score = 130 bits (324), Expect = 1e-29
Identities = 61/126 (48%), Positives = 82/126 (64%), Gaps = 1/126 (0%)
Query: 23 DEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVDGHCH 82
D+YFM + L++LR+TC RL VGA V+D I+A GYNG+ HCID GC +V+GHC
Sbjct: 7 DQYFMAQSHLLALRSTCTRLMVGATIVRDKRIIAGGYNGSISGGPHCIDEGCYVVEGHCI 66
Query: 83 RAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIKEIVYEEMYPNE-VTE 141
R +HAE N + A+ G+ EGA +YVTHFPC C K +I +GIK++ Y Y N E
Sbjct: 67 RTIHAEVNALLQCAKFGVPTEGAEIYVTHFPCVNCTKAIIQSGIKKVYYATDYKNSPYAE 126
Query: 142 MLLKEA 147
L ++A
Sbjct: 127 ELFRDA 132
>sp|P32393|CME2_BACSU COME OPERON PROTEIN 2 >gi|541404|pir||S39864 late competence operon
required for DNA binding and uptake comEB - Bacillus
subtilis >gi|289261|gb|AAC36906.1| (L15202) comE ORF2
[Bacillus subtilis] >gi|1303797|dbj|BAA12453.1| (D84432)
ComEB [Bacillus subtilis] >gi|2635004|emb|CAB14500.1|
(Z99117) alternate gene name: comD [Bacillus subtilis]
Length = 189
Score = 128 bits (319), Expect = 4e-29
Identities = 60/140 (42%), Positives = 87/140 (61%), Gaps = 3/140 (2%)
Query: 23 DEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVDGHCH 82
++YFM + L++LR+TCPRL VGA V+D ++A GYNG+ HC D GC+M+D HC
Sbjct: 7 NQYFMAQSHLLALRSTCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEGCLMIDDHCA 66
Query: 83 RAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIKEIVYEEMYPNEVTEM 142
R +HAE N I ++ G+ +GA +YVTH+PC C K +I AGIK + Y E Y T
Sbjct: 67 RTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQCCKSIIQAGIKTVYYAEDYK---THP 123
Query: 143 LLKEAQEKGLIKIRQFKLSK 162
+E E+ + + Q +L +
Sbjct: 124 YAQELFEQAGVTVEQVELDE 143
>pir||E71342 probable deoxycytidylate deaminase - syphilis spirochete
>gi|3322548|gb|AAC65262.1| (AE001209) deoxycytidylate
deaminase, putative [Treponema pallidum]
Length = 166
Score = 121 bits (300), Expect = 6e-27
Identities = 64/135 (47%), Positives = 80/135 (58%), Gaps = 9/135 (6%)
Query: 19 RPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIM-- 76
RP+ DEYFM + ++ RATC R R G V +D ++L TGY GAPR + HC + G +
Sbjct: 10 RPSWDEYFMEVCHAIAKRATCDRGRAGCVIARDHHLLVTGYAGAPRGLLHCDEHGHQLRT 69
Query: 77 ---VDG----HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIKEI 129
DG HC R VHAEQN + AAR GI LEGATLY T PC TC L+IN GI +
Sbjct: 70 VQHEDGTCTQHCVRTVHAEQNALCQAARLGIGLEGATLYCTMTPCRTCAMLIINCGIVRV 129
Query: 130 VYEEMYPNEVTEMLL 144
V E+ Y ++L
Sbjct: 130 VAEKRYQTATESIML 144
>gb|AAA34561.1| (M13010) dCMP deaminase [Saccharomyces cerevisiae]
Length = 312
Score = 104 bits (256), Expect = 9e-22
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 13/169 (7%)
Query: 2 KIEIVLDKEKAERIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNG 61
+++I+ DKEK + +RP+ D YFM +A L + R+ C + RVG V V++ ++ATGYNG
Sbjct: 144 QLKILDDKEK-QMAPLMRPSWDSYFMKLATLAASRSNCMKRRVGCVIVRECRVIATGYNG 202
Query: 62 APRNMDHCIDVGCIMV-DG-----HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD 115
PR++ +C + GC DG H +HAE+N + A R + + ATLY PC
Sbjct: 203 TPRHLTNCFNGGCPRCNDGDSRNLHTCLCLHAEENALLEAGRDRVG-QNATLYCDTCPCL 261
Query: 116 TCLKLLINAGIKEIVYEEMY-PNEVTEMLLKEAQEKGLIKIRQFKLSKE 163
TC ++ GI E+VY + Y +E + +LK A I +RQF ++E
Sbjct: 262 TCSVKIVQTGISEVVYSQSYRMDEESFKVLKNAG----ITVRQFSFTEE 306
>gi|6321938 dCMP deaminase; Dcd1p [Saccharomyces cerevisiae]
>gi|729306|sp|P06773|DCTD_YEAST DEOXYCYTIDYLATE
DEAMINASE (DCMP DEAMINASE) >gi|630041|pir||S46762 dCMP
deaminase (EC 3.5.4.12) - yeast (Saccharomyces
cerevisiae) >gi|500658|gb|AAB68985.1| (U10397) Dcd1p:
dCMP deaminase [Saccharomyces cerevisiae]
Length = 312
Score = 104 bits (256), Expect = 9e-22
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 13/169 (7%)
Query: 2 KIEIVLDKEKAERIKKIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNG 61
+++I+ DKEK + +RP+ D YFM +A L + R+ C + RVG V V++ ++ATGYNG
Sbjct: 144 QLKILDDKEK-QMAPLMRPSWDSYFMKLATLAASRSNCMKRRVGCVIVRECRVIATGYNG 202
Query: 62 APRNMDHCIDVGCIMV-DG-----HCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCD 115
PR++ +C + GC DG H +HAE+N + A R + + ATLY PC
Sbjct: 203 TPRHLTNCFNGGCPRCNDGDSRNLHTCLCLHAEENALLEAGRDRVG-QNATLYCDTCPCL 261
Query: 116 TCLKLLINAGIKEIVYEEMY-PNEVTEMLLKEAQEKGLIKIRQFKLSKE 163
TC ++ GI E+VY + Y +E + +LK A I +RQF ++E
Sbjct: 262 TCSVKIVQTGISEVVYSQSYRMDEESFKVLKNAG----ITVRQFSFTEE 306
>pir||T31322 dCMP deaminase (EC 3.5.4.12) - Cenarchaeum symbiosum
>gi|3599408|gb|AAC62713.1| (AF083072) dCMP deaminase
[Cenarchaeum symbiosum]
Length = 184
Score = 92.8 bits (227), Expect = 2e-18
Identities = 59/146 (40%), Positives = 75/146 (50%), Gaps = 15/146 (10%)
Query: 19 RPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGC---- 74
RPT DEYFML A+L LR+ C +VGAV V+D LATGYNG P + +C + GC
Sbjct: 14 RPTWDEYFMLQAELAKLRSNCIVRKVGAVIVRDHRQLATGYNGTPPGVKNCYEGGCERCA 73
Query: 75 IMVDGHCHRAV--------HAEQNVIAMAARKGISL--EGATLYVTHFPCDTCLKLLINA 124
++G HAE N I A GI GAT+Y T PC C K+ +
Sbjct: 74 ERIEGRIKSGEALDRCLCNHAEANAIMHCAILGIGAGGGGATMYTTFSPCLECTKMAVTI 133
Query: 125 GIKEIVYEEMYPNEVTEMLLKEAQEK 150
GI+ V + YP E T L+KE +
Sbjct: 134 GIRRFVCLDTYP-ENTSRLVKETSSE 158
>gb|AAC62690.1| (AF083071) dCMP deaminase [Cenarchaeum symbiosum]
Length = 213
Score = 89.7 bits (219), Expect = 2e-17
Identities = 55/143 (38%), Positives = 73/143 (50%), Gaps = 15/143 (10%)
Query: 19 RPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVD 78
RP+ DEYFML A+L LR+ C +VGAV V+D LATGYNG P + +C + GC
Sbjct: 43 RPSWDEYFMLQAELAKLRSNCMVRKVGAVIVRDHRQLATGYNGTPPGVKNCFEGGCERCI 102
Query: 79 GHCHRAV------------HAEQNVIAMAARKGISLEG--ATLYVTHFPCDTCLKLLINA 124
+ HAE N I A GI G AT+Y T PC C K+ +
Sbjct: 103 ERMEGKIRSGEGLDRCLCNHAEANAIMHCAILGIGAGGGNATMYTTFSPCLECTKMAVTI 162
Query: 125 GIKEIVYEEMYPNEVTEMLLKEA 147
GI+ V + YP ++ L+K+A
Sbjct: 163 GIRRFVCLDTYPENASK-LVKDA 184
>gi|9632715 dCMP deaminase [Bacteriophage T4] >gi|118398|sp|P16006|DCTD_BPT4
DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE)
>gi|67785|pir||DUBPT4 dCMP deaminase (EC 3.5.4.12) -
phage T4 >gi|215838|gb|AAA32489.1| (J05172)
deoxycytidylate deaminase (EC 3.5.4.12) [Bacteriophage
T4] >gi|5354339|gb|AAD42546.1|AF158101_133 (AF158101)
dCMP deaminase [Bacteriophage T4]
Length = 193
Score = 87.8 bits (214), Expect = 8e-17
Identities = 64/190 (33%), Positives = 88/190 (45%), Gaps = 46/190 (24%)
Query: 29 IAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGC-----------IMV 77
IA LVS + C +VGAV K+G I++TGYNG+P +C D ++
Sbjct: 9 IAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAII 68
Query: 78 DGH---C--------------HRA----------VHAEQNVIAMAARKGISLEGATLYVT 110
GH C HR+ +HAE N I AAR G S+EGAT+YVT
Sbjct: 69 QGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVT 128
Query: 111 HFPCDTCLKLLINAGIKEIVYEEMYPNEVT--EMLLKEAQEKGLIKIRQFKLSKERVKEF 168
PC C K + +GIK++VY E Y + +L+ A I F + K+ + +
Sbjct: 129 LSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRNA------GIEVFNVPKKNLNKL 182
Query: 169 LEELFPEFCG 178
E EFCG
Sbjct: 183 NWENINEFCG 192
>pir||T40152 probable deoxycytidylate deaminase - fission yeast
(Schizosaccharomyces pombe) >gi|2956780|emb|CAA17893.1|
(AL022103) putative deoxycytidylate deaminase
[Schizosaccharomyces pombe]
Length = 348
Score = 87.0 bits (212), Expect = 1e-16
Identities = 56/169 (33%), Positives = 88/169 (51%), Gaps = 16/169 (9%)
Query: 1 MKIEIVLDKEKAERIK--KIRPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATG 58
+K+ + +KA+ + + RP+ D YFM +A L + R+ C + RVG V V+ ++ATG
Sbjct: 177 IKLHLWEKLQKADLLNPNRFRPSWDSYFMEMASLAAKRSNCMKRRVGCVLVRGNRVIATG 236
Query: 59 YNGAPRNMDHCIDVGCIMVD--GHCHR------AVHAEQNVIAMAARKGISLEGATLYVT 110
YNG PR +C + GC + C + +HAE+N + A R+ + A LY
Sbjct: 237 YNGTPRGATNCNEGGCPRCNSASSCGKELDTCLCLHAEENALLEAGRERVG-NNAILYCD 295
Query: 111 HFPCDTCLKLLINAGIKEIVYEEMY-PNEVTEMLLKEAQEKGLIKIRQF 158
PC TC + GIKE+VY Y + T LL+ A +++RQ+
Sbjct: 296 TCPCLTCSVKITQLGIKEVVYHTSYNMDSHTASLLQAAG----VQLRQY 340
>sp|P00814|DCTD_BPT2 DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE) >gi|67784|pir||DUBPC2
dCMP deaminase (EC 3.5.4.12) - phage T2
Length = 188
Score = 84.7 bits (206), Expect = 7e-16
Identities = 63/183 (34%), Positives = 87/183 (47%), Gaps = 43/183 (23%)
Query: 29 IAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCI-----------MV 77
IA LVS + C +VGAV K+G I++TGYNG+P +C + I ++
Sbjct: 9 IAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCDNYAAIEGWLLNKPKHTII 68
Query: 78 DGH---C--------------HRA----------VHAEQNVIAMAARKGISLEGATLYVT 110
GH C HR+ +HAE N I AAR G S+EGAT+YVT
Sbjct: 69 QGHKPECVSFGTSDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVT 128
Query: 111 HFPCDTCLKLLINAGIKEIVYEEMYPNEVT--EMLLKEAQEKGLIKIRQFKLSKERVKEF 168
PC C K + +GIK++VY E Y + +L+ A G+ KL+ E + EF
Sbjct: 129 LSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRNA---GIEVFNVPKLNWENISEF 185
Query: 169 LEE 171
E
Sbjct: 186 CGE 188
>gi|9630421 putative deoxycytidinylate deaminase; gp36.1 [Mycobacteriophage
D29] >gi|6014935|sp|O22000|DCTD_BPMD2 DEOXYCYTIDYLATE
DEAMINASE (DCMP DEAMINASE) >gi|7460364|pir||C72804
probable deoxycytidinylate deaminase protein -
Mycobacterium phage D29 >gi|3172285|gb|AAC18478.1|
(AF022214) putative deoxycytidinylate deaminase; gp36.1
[Mycobacteriophage D29]
Length = 128
Score = 79.6 bits (193), Expect = 2e-14
Identities = 51/124 (41%), Positives = 62/124 (49%), Gaps = 13/124 (10%)
Query: 19 RPTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDV------ 72
RP DEYF+ IA + R+ C R +VGAV VKD + TGYNGAP C
Sbjct: 3 RPDWDEYFLGIATAAAQRSDCERSKVGAVVVKDRRVRGTGYNGAPAGAAGCSTCPRRLSG 62
Query: 73 ---GCIMVDGHCHR--AVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIK 127
G R AVHAE N + R+ L GATLYVT PC C L+ +GI+
Sbjct: 63 AVPGVSDYSSGATRCVAVHAEANALLYCDRE--DLIGATLYVTREPCYACSNLIAASGIE 120
Query: 128 EIVY 131
+VY
Sbjct: 121 RVVY 124
>gb|AAD45277.1|AF152114_5 (AF152114) dihydrofolate reductase/deoxycytidylate deaminase fusion
protein [Mycoplasma gallisepticum]
Length = 317
Score = 79.6 bits (193), Expect = 2e-14
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 23 DEYFMLIAKLVSLRATCPRLRVGAVAV-KDGYILATGYNGAPRNMDHCIDVGCIMVDGHC 81
DEYFM++A + ++R+ P +VGA V K Y++ GYNG P+ +D+ D
Sbjct: 169 DEYFMMLANVSAMRSKDPSTQVGACIVNKKKYVIGLGYNGMPKGLDNIFPWDRTNQDSAK 228
Query: 82 HR---AVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIKEIVYEE----- 133
+ VHAE N I + +E TLY FPC C K ++ +GI E+VYE+
Sbjct: 229 TKYPYVVHAEINAILNTSTV---IEDCTLYTNLFPCSNCAKTIVQSGIVEVVYEDNKYEH 285
Query: 134 MYPNEVTEMLLKEAQEKGLIKIRQFK 159
+ N+++ +LK + IK+RQ K
Sbjct: 286 LPDNKISTHILKSSN----IKLRQHK 307
>sp|P30648|DCTD_CAEEL PROBABLE DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE)
>gi|102516|pir||S23240 hypothetical protein ZK643.2 -
Caenorhabditis elegans >gi|3881681|emb|CAA77473.1|
(Z11126) contains similarity to Pfam domain: PF00383
(Cytidine and deoxycytidylate deaminase zinc-binding
region), Score=88.8, E-value=3.5e-23, N=1
[Caenorhabditis elegans]
Length = 197
Score = 67.5 bits (162), Expect = 1e-10
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 22 KDEYFMLIAKLVSLRATCPRLRVGAVAV-KDGYILATGYNGAPRNMDHCI---DVGCIMV 77
K + F+ IAK+ SLR+ P +VG V V KD I++ GYNG P +D + D
Sbjct: 50 KHQRFLRIAKVTSLRSKDPNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKEDPED 109
Query: 78 DGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTCLKLLINAGIKEIVYEE 133
+ H + VHAE N A+ ++ +L T+YVT FPC+ C ++LI + +K++ + E
Sbjct: 110 NKHLY-VVHAEMN--AIINKRCTTLHDCTVYVTLFPCNKCAQMLIQSRVKKVYFLE 162
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62770955
Number of Sequences: 2977
Number of extensions: 2340260
Number of successful extensions: 7013
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6987
Number of HSP's gapped (non-prelim): 19
length of query: 182
length of database: 189,106,746
effective HSP length: 52
effective length of query: 130
effective length of database: 157,985,422
effective search space: 20538104860
effective search space used: 20538104860
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)