BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1983 (minD-1) DE:cell division inhibitor (minD-1)
(260 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcu... 501 e-141
pir||H71038 probable cell division inhibitor - Pyrococcus horiko... 407 e-113
gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulg... 282 4e-75
sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0547 >gi... 271 7e-72
pir||B69113 cell division inhibitor - Methanobacterium thermoaut... 270 2e-71
pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcu... 215 5e-55
pir||C71105 probable cell division inhibitor MinD - Pyrococcus h... 213 2e-54
sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0169 >gi... 194 9e-49
gb|AAG19374.1| (AE005032) cell division inhibitor; MinD1 [Haloba... 155 5e-37
gb|AAG20269.1| (AE005101) cell division inhibitor; MinD2 [Haloba... 152 5e-36
sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 148 6e-35
gi|7524873 cell division inhibitor MinD [Chlorella vulgaris] >gi... 142 3e-33
emb|CAB53105.1| (AJ245645) cell division inhibitor MinD [Prototh... 141 8e-33
dbj|BAA90628.1| (AP001129) Similar to Chlorella vulgaris C-27 ch... 139 3e-32
dbj|BAB06746.1| (AP001517) septum site-determining protein [Baci... 136 2e-31
dbj|BAA90261.1| (AB030278) MinD [Arabidopsis thaliana] >gi|97582... 136 3e-31
gi|11467635 inhibition of cell division factor [Guillardia theta... 134 8e-31
gi|11466429 septum-site determining protein [Mesostigma viride] ... 134 1e-30
gi|11499521 cell division inhibitor (minD-2) [Archaeoglobus fulg... 133 2e-30
sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 132 3e-30
gi|11467859 septum-site determining protein [Nephroselmis olivac... 132 3e-30
pir||C82136 septum site-determining protein MinD VC1960 [importe... 129 3e-29
pir||C81230 septum site-determining protein MinD NMB0171 [import... 128 6e-29
sp|P57411|MIND_BUCAI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 127 1e-28
pir||F70375 cell division inhibitor (septum placement) minD2 - A... 126 2e-28
pir||F71191 hypothetical protein PH1806 - Pyrococcus horikoshii ... 122 4e-27
sp|P18197|MIND_ECOLI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 118 5e-26
pir||C82695 septum site-determining protein XF1321 [imported] - ... 117 1e-25
gb|AAF33831.1|AF226282_5 (AF226282) hypothetical flagellar biosy... 116 2e-25
pir||H75150 cell division inhibitor (mind-3) PAB2105 - Pyrococcu... 115 7e-25
pir||F83239 cell division inhibitor MinD PA3244 [imported] - Pse... 114 1e-24
sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 114 1e-24
pir||D75478 septum site-determining protein - Deinococcus radiod... 111 6e-24
pir||D71290 probable ATP-binding protein (ylxH-1) - syphilis spi... 109 4e-23
gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa] 106 2e-22
sp|O25098|MIND_HELPY SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 104 1e-21
gb|AAF32413.1| (AF069392) flagellar biosynthesis protein FlhG [V... 104 1e-21
sp|Q9ZMA8|MIND_HELPJ SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 103 2e-21
sp|P40742|YLXH_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN FLHF-CHEB I... 101 9e-21
pir||B83463 flagellar synthesis regulator FleN PA1454 [imported]... 101 9e-21
pir||E82123 MinD-related protein VC2067 [imported] - Vibrio chol... 100 3e-20
dbj|BAB06155.1| (AP001515) unknown conserved protein [Bacillus h... 100 3e-20
gb|AAA85593.1| (U43739) YlxH [Borrelia burgdorferi] 98 1e-19
pir||E70133 ATP-binding protein (ylxH-1) homolog - Lyme disease ... 98 1e-19
gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mobilis] 97 2e-19
sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 Spo0A ac... 95 7e-19
sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 ... 91 1e-17
gb|AAF16005.1|AF187159_5 (AF187159) ParA [Streptomyces coelicolo... 90 2e-17
gb|AAC03484.1| (AF031590) Soj-like [Streptomyces coelicolor A3(2)] 89 4e-17
pir||T36573 probable partitioning or sporulation protein - Strep... 89 4e-17
gi|10954513 SOJ protein [Methanococcus jannaschii] >gi|2496226|s... 89 5e-17
pir||B71346 probable SpoOJ regulator (soj) - syphilis spirochete... 89 5e-17
pir||C81422 probable ATP-binding protein Cj0063c [imported] - Ca... 85 1e-15
gb|AAG10431.1| (AF251019) minD [Tagetes erecta] 83 4e-15
pir||B64649 ATP-binding protein - Helicobacter pylori (strain 26... 82 5e-15
sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-UNCI I... 82 7e-15
gb|AAB53135.1| (L39923) ORF278; hypothetical 30.3 Kd protein; si... 82 7e-15
pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (... 82 7e-15
pir||D71938 hypothetical protein jhp0390 - Helicobacter pylori (... 82 7e-15
dbj|BAB07777.1| (AP001520) centromere-like function involved in ... 82 7e-15
sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 ... 80 3e-14
pir||A71125 probable SOJ protein - Pyrococcus horikoshii >gi|325... 80 3e-14
sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ... 79 4e-14
pir||B82950 chromosome partitioning protein Soj PA5563 [imported... 79 4e-14
sp|O05189|PARA_CAUCR CHROMOSOME PARTITIONING PROTEIN PARA >gi|19... 79 6e-14
pir||C81999 parA family protein NMA0076 [imported] - Neisseria m... 79 6e-14
gb|AAC08060.1| (AF031898) unknown [Pseudomonas putida] 78 1e-13
pir||H70404 cell division inhibitor (septum placement) minD1 - A... 78 1e-13
pir||D81227 ParA family protein NMB0191 [imported] - Neisseria m... 78 1e-13
gb|AAF67043.1|AF183382_3 (AF183382) MinD homolog [Pseudomonas pu... 78 1e-13
pir||F70595 hypothetical protein Rv3213c - Mycobacterium tubercu... 77 2e-13
pir||B71714 soj protein (soj) RP058 - Rickettsia prowazekii >gi|... 77 2e-13
pir||A72319 conserved hypothetical protein - Thermotoga maritima... 77 2e-13
sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir... 76 3e-13
gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo... 76 3e-13
pir||F70851 probable parB protein - Mycobacterium tuberculosis (... 76 4e-13
dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens] 76 5e-13
pir||A82577 chromosome partitioning protein XF2282 [imported] - ... 76 5e-13
pir||B75038 soj protein homolog PAB0852 - Pyrococcus abyssi (str... 75 7e-13
pir||D81426 parA family protein Cj0100 [imported] - Campylobacte... 75 7e-13
emb|CAC06097.1| (AJ010494) ParA protein [Listeria monocytogenes] 75 9e-13
sp|Q57853|Y410_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0410 >gi... 75 1e-12
pir||T36875 probable partitioning or sporulation protein - Strep... 75 1e-12
pir||G71495 probable chromosome partitioning ATPase-chltr plasmi... 74 1e-12
pir||B81656 ParA family protein TC0871 [imported] - Chlamydia mu... 74 1e-12
emb|CAC01353.1| (AL390975) putative ATP-binding protein [Strepto... 74 1e-12
pir||D75131 mrp-family probable nucleotide-binding protein PAB17... 74 2e-12
sp|P72190|YCAB_PSEFR HYPOTHETICAL 30.2 KD PROTEIN IN CAPB 3'REGI... 74 2e-12
gb|AAF00142.1|AF149810_1 (AF149810) cell division inhibitor MinD... 73 3e-12
pir||E71274 probable ATP-binding protein (ylxH-2) - syphilis spi... 73 3e-12
sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir... 73 4e-12
gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacteriu... 72 6e-12
pir||E82035 ParA family protein VC2773 [imported] - Vibrio chole... 72 8e-12
sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 ... 71 1e-11
pir||F75448 mrp protein - Deinococcus radiodurans (strain R1) >g... 71 1e-11
gi|10957571 virulence plasmid ParA family protein pGP5-D [Chlamy... 71 1e-11
emb|CAB89207.1| (AJ277593) putative partitioning protein [Thermu... 70 2e-11
pir||C70504 hypothetical protein Rv1708 - Mycobacterium tubercul... 69 5e-11
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199... 69 7e-11
sp|Q58334|Y924_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0924 >gi... 69 7e-11
pir||B83210 conserved hypothetical protein PA3481 [imported] - P... 69 7e-11
>pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcus abyssi
(strain Orsay) >gi|5457995|emb|CAB49485.1| (AJ248284)
cell division inhibitor (minD-1) [Pyrococcus abyssi]
Length = 260
Score = 501 bits (1275), Expect = e-141
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTL 60
MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTL
Sbjct: 1 MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTL 60
Query: 61 HDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAP 120
HDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAP
Sbjct: 61 HDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAP 120
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTEL 180
AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTEL
Sbjct: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTEL 180
Query: 181 SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGIKWKP 240
SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGIKWKP
Sbjct: 181 SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGIKWKP 240
Query: 241 PEPESPVKRIFRALFGGRRR 260
PEPESPVKRIFRALFGGRRR
Sbjct: 241 PEPESPVKRIFRALFGGRRR 260
>pir||H71038 probable cell division inhibitor - Pyrococcus horikoshii
>gi|3258029|dbj|BAA30712.1| (AP000006) 217aa long
hypothetical cell division inhibitor [Pyrococcus
horikoshii]
Length = 217
Score = 407 bits (1035), Expect = e-113
Identities = 208/217 (95%), Positives = 215/217 (98%)
Query: 44 MANLSLILGMEDIPVTLHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRD 103
MANLSLILGMEDIPVTLHDVLAGEA+LKDAIYEGPAGVKVIPGGLSLEK+KKAR ERLR+
Sbjct: 1 MANLSLILGMEDIPVTLHDVLAGEAELKDAIYEGPAGVKVIPGGLSLEKVKKARPERLRE 60
Query: 104 LIREISQMGDFILIDAPAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGT 163
LIREISQMGDFILIDAPAGLELTS+TALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGT
Sbjct: 61 LIREISQMGDFILIDAPAGLELTSVTALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGT 120
Query: 164 LPLGAILNRVTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAA 223
LPLGAILNRVT+EKTELSREEIEALLEVPVLG VPEDPEVKRASAYGVPLVVKNPTSPAA
Sbjct: 121 LPLGAILNRVTNEKTELSREEIEALLEVPVLGIVPEDPEVKRASAYGVPLVVKNPTSPAA 180
Query: 224 IAYKEIAAKLAGIKWKPPEPESPVKRIFRALFGGRRR 260
IAYK+IAAKLAGIKWKPPEPESPVKRIF+ALFGGRRR
Sbjct: 181 IAYKQIAAKLAGIKWKPPEPESPVKRIFKALFGGRRR 217
>gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulgidus]
>gi|7443738|pir||H69336 cell division inhibitor (minD-1)
homolog - Archaeoglobus fulgidus
>gi|2649916|gb|AAB90541.1| (AE001056) cell division
inhibitor (minD-1) [Archaeoglobus fulgidus]
Length = 263
Score = 282 bits (713), Expect = 4e-75
Identities = 136/232 (58%), Positives = 184/232 (78%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R+I ASGKGGTGKTT AN+GVALAQ G DV ++DADITMANL LILGME +PVTL +V
Sbjct: 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNV 62
Query: 64 LAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAGL 123
LAGEA + +AIY GP GVKV+P G+SLE ++KA E+L D++ +I + D +L+DAPAGL
Sbjct: 63 LAGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGL 122
Query: 124 ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSRE 183
E +++ A+ +EL++V NPEI++ITD LKTK+VAE+LGT LG ++NR+T+ E+++
Sbjct: 123 ERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEMAKN 182
Query: 184 EIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAG 235
EIEA+LE V+G +PEDPEV+RA+AYG P+V+++P SPAA A E+A +AG
Sbjct: 183 EIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIVELANYIAG 234
>sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0547 >gi|2144955|pir||C64368
cell division inhibitor MinD homolog MJ0547 -
Methanococcus jannaschii >gi|1591252|gb|AAB98539.1|
(U67504) cell division inhibitor minD [Methanococcus
jannaschii]
Length = 264
Score = 271 bits (685), Expect = 7e-72
Identities = 137/257 (53%), Positives = 190/257 (73%), Gaps = 3/257 (1%)
Query: 5 SIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVL 64
+I ASGKGGTGKTT AN+ VALA+FGK V ++DADI MANL LI+G+E PVTL+DVL
Sbjct: 8 AIAIASGKGGTGKTTISANLAVALAKFGKKVAVLDADIAMANLELIMGLEGKPVTLNDVL 67
Query: 65 AGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAGLE 124
AG+AD+KDAIYEGP GV VIP G+SLEK ++A+ E+L ++++ I + + ++ID PAG+
Sbjct: 68 AGKADIKDAIYEGPEGVLVIPAGVSLEKFRRAKPEKLEEVLKAIHDLVEILIIDCPAGIG 127
Query: 125 LTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSREE 184
++ A+ LI+V NPEI++I+D+LK + ++LGT +GAI+NRV++E TEL +
Sbjct: 128 KETLIAISSADGLIVVVNPEISSISDALKIIAITKRLGTDIIGAIVNRVSNESTELGVKA 187
Query: 185 IEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGIKWK---PP 241
IE +LEVPV+G VPEDP V++A+A+G PLV+ P SPAA A EIAAKL G K++
Sbjct: 188 IETILEVPVIGVVPEDPHVRKAAAFGTPLVIMYPDSPAAQAIMEIAAKLIGAKYEAQLKK 247
Query: 242 EPESPVKRIFRALFGGR 258
+ ES + + + LFG R
Sbjct: 248 KKESFISKFIKGLFGRR 264
>pir||B69113 cell division inhibitor - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622975|gb|AAB86306.1| (AE000937)
cell division inhibitor [Methanobacterium
thermoautotrophicum]
Length = 259
Score = 270 bits (682), Expect = 2e-71
Identities = 133/257 (51%), Positives = 185/257 (71%), Gaps = 2/257 (0%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R I ASGKGG GKTT AN+GVAL+ +G+ V+++DADI MANL LILGME VTLHDV
Sbjct: 3 RVITVASGKGGVGKTTITANLGVALSTYGERVVVLDADIAMANLELILGMEGKSVTLHDV 62
Query: 64 LAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAGL 123
LAG A ++DA+YEGP GV+V+P G+SLE ++ + +RL D + + + D +LIDAPAGL
Sbjct: 63 LAGNASIEDAVYEGPNGVRVVPAGISLEGLRNVKLDRLEDALAYLIEDTDILLIDAPAGL 122
Query: 124 ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSRE 183
E ++ AL EL++VT PE+ +I+D+LKTK+VA KL +G ++NR +KT LS E
Sbjct: 123 EKDAVAALAAADELLLVTTPEVPSISDALKTKIVASKLDINIIGVVINREQYDKTFLSVE 182
Query: 184 EIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGIKWKPPEP 243
E+E +LEVPV+ +P+DPEV RA+A+G P+V+KNP SPA+ A E+AA L G +++P EP
Sbjct: 183 EVETILEVPVIAVIPDDPEVSRAAAFGEPIVIKNPKSPASNALMELAADLIGEEYQPIEP 242
Query: 244 ESP--VKRIFRALFGGR 258
+ + ++ L G R
Sbjct: 243 DKQGVIAKLISGLMGRR 259
>pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcus abyssi
(strain Orsay) >gi|5458855|emb|CAB50342.1| (AJ248287)
cell division inhibitor (minD-2) [Pyrococcus abyssi]
Length = 245
Score = 215 bits (541), Expect = 5e-55
Identities = 112/240 (46%), Positives = 160/240 (66%), Gaps = 4/240 (1%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R I SGKGGTGKTT AN+ VAL + GK V+ +D D+TMANLSL+LG++D+ VTLHDV
Sbjct: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
Query: 64 LAGEADLKDAIYEGPA-GVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
LAGEA L+DAIY V V+PG + E + KA +L ++I+ + DFILID PAG
Sbjct: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAG 122
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSR 182
L+L +++A+L G+E ++VTNPEI+ +TD++K +V K G LG ILNR + ++
Sbjct: 123 LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDIPP 182
Query: 183 EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIA---AKLAGIKWK 239
+ + +++VP+L +PEDP ++ + G+P V P S A A+ ++A KLAGIK K
Sbjct: 183 DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIKAK 242
>pir||C71105 probable cell division inhibitor MinD - Pyrococcus horikoshii
>gi|3257018|dbj|BAA29701.1| (AP000003) 245aa long
hypothetical cell division inhibitor MinD [Pyrococcus
horikoshii]
Length = 245
Score = 213 bits (537), Expect = 2e-54
Identities = 110/240 (45%), Positives = 161/240 (66%), Gaps = 4/240 (1%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R I SGKGGTGKTT AN+ VAL + G+ V+ +D D+TMANLSL+LG++D+ +TLHDV
Sbjct: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVDDVNITLHDV 62
Query: 64 LAGEADLKDAIYEGP-AGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
LAG+A L+DAIY V ++PG + E + KA +L ++I+ + DFILID PAG
Sbjct: 63 LAGDAKLEDAIYMTQFENVYILPGAVDWEHVIKADPRKLPEVIKSLKGKYDFILIDCPAG 122
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSR 182
L+L +++A+L G+E I+VTNPEI+ +TD++K +V +K G LG ILNR + ++
Sbjct: 123 LQLDAMSAMLSGEEAILVTNPEISCLTDTMKVGMVLKKAGLAILGFILNRYGRSERDIPP 182
Query: 183 EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAA---KLAGIKWK 239
E + +++VP+L +PEDP ++ + G+P V P S A A+ ++A KLAGIK K
Sbjct: 183 EAAQDVMDVPLLAVIPEDPVIREGTLEGIPAVKYKPESKGAQAFIKLAEEVDKLAGIKAK 242
>sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0169 >gi|2144954|pir||B64321
cell division inhibitor MinD homolog MJ0169 -
Methanococcus jannaschii >gi|1590922|gb|AAB98154.1|
(U67474) cell division inhibitor minD [Methanococcus
jannaschii]
Length = 263
Score = 194 bits (488), Expect = 9e-49
Identities = 103/231 (44%), Positives = 152/231 (65%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I ASGKGG GKTTT A++ VALA+ GK V+ ID DI+MANL ++ ME +LH+VL+
Sbjct: 6 ITIASGKGGVGKTTTSASLAVALAKLGKKVLAIDGDISMANLGILFNMEKKKPSLHEVLS 65
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAGLEL 125
EAD++DAIY+ GV V+P LSLE KK+ + L D++ E++ D+++IDAPAGL
Sbjct: 66 EEADVRDAIYKHKTGVYVLPTSLSLEGYKKSDIDLLPDVVNEVADDFDYVIIDAPAGLNR 125
Query: 126 TSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSREEI 185
T L I +L++V PE+ +I D+++ K AE GT +G +LNRV + E+ R+EI
Sbjct: 126 EMATHLAIADKLLLVVTPEMFSIIDAVRLKESAEMAGTPLMGVVLNRVGRDFGEMGRDEI 185
Query: 186 EALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGI 236
E L++ VL VPED V+ A+ + ++ SPA+ AY ++A+ +AG+
Sbjct: 186 EMLIKGKVLVEVPEDENVRSAALKKMSVIEYRKNSPASQAYMKLASIIAGV 236
>gb|AAG19374.1| (AE005032) cell division inhibitor; MinD1 [Halobacterium sp. NRC-1]
Length = 323
Score = 155 bits (388), Expect = 5e-37
Identities = 101/245 (41%), Positives = 139/245 (56%), Gaps = 6/245 (2%)
Query: 2 EGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLH 61
EG ASGKGG GK+TT AN+GVALA G +V L+D D+ MANL+ + G+ + VTLH
Sbjct: 7 EGYVFAVASGKGGVGKSTTTANLGVALADEGFEVALVDVDLGMANLAGLFGLTE-DVTLH 65
Query: 62 DVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPA 121
DVL+G+A DA Y+ GV V+PG LE+ +A A+ L ++ + D +L+DA A
Sbjct: 66 DVLSGDASPADAAYDA-HGVTVVPGSTDLEQFAEADAKSLHRVVTRLRADHDVVLLDAGA 124
Query: 122 GLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELS 181
GL A+ + +++VT E+ ++TD+ KT + KL +GA+ R T +
Sbjct: 125 GLSYDIAMAMSVADGVLLVTTAELNSLTDATKTGQLVSKLDKPVVGAVFTR-TGDGGFDD 183
Query: 182 REEIEALLEV--PVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLA-GIKW 238
E I A L V +VP D VK A G P+V P SPAA AY +AA LA I
Sbjct: 184 VEGIAAALGTTDAVTVSVPHDDAVKLAVRKGHPVVDLTPESPAARAYDRLAASLADSIGM 243
Query: 239 KPPEP 243
PP+P
Sbjct: 244 TPPQP 248
>gb|AAG20269.1| (AE005101) cell division inhibitor; MinD2 [Halobacterium sp. NRC-1]
Length = 305
Score = 152 bits (379), Expect = 5e-36
Identities = 86/237 (36%), Positives = 128/237 (53%), Gaps = 4/237 (1%)
Query: 1 MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGM-EDIPVT 59
M GR ASGKGG GKTTT N+ +A+ + V+L+DAD+ MAN+ ++ E T
Sbjct: 1 MSGRVFAVASGKGGVGKTTTAVNVAAVMAEADRSVVLVDADLGMANVDHVVACDESATAT 60
Query: 60 LHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDA 119
LHDVLA +A L DA PAG VI GG ++ +A L D+ + D +++D
Sbjct: 61 LHDVLADDAALTDATAAAPAGFDVIVGGTTITDFGRADPSALPDVAATLRDRYDCVIVDT 120
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE 179
GL + L + E ++V+ + AA+ ++ KT+ + E++G GA++ RVT +
Sbjct: 121 GGGLSHDTTVPLGLADETVLVSTRQTAALANTAKTRALVERVGGHVAGAVVTRVTDDAGG 180
Query: 180 LSR---EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKL 233
+ A L+ +LG +PED V + G PLV P SPAA AY+E+A L
Sbjct: 181 ADAGHGDAAAATLQTDILGLIPEDSRVADSERAGTPLVSLAPESPAAQAYRELAYTL 237
>sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443733|pir||S76970 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
>gi|1001783|dbj|BAA10662.1| (D64005) septum
site-determining protein MinD [Synechocystis sp.]
Length = 266
Score = 148 bits (370), Expect = 6e-35
Identities = 93/241 (38%), Positives = 144/241 (59%), Gaps = 12/241 (4%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R IV SGKGG GKTTT AN+G ALA+ GK V+LIDAD + NL L+LG+E I T D
Sbjct: 3 RIIVVTSGKGGVGKTTTTANLGAALARLGKKVVLIDADFGLRNLDLLLGLEQRIVYTAID 62
Query: 63 VLAGEADLKDAIYEGP--AGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAP 120
VLA E + A+ + + ++P + K AE+++ L+ ++ D+I+ID P
Sbjct: 63 VLADECTIDKALVKDKRLPNLVLLPAAQNRSK-DAINAEQMQSLVEQLKDKFDYIIIDCP 121
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKT--KLVAEKLGTLPLGAILNRVTSEKT 178
AG+E A+ +E IIVT PE++A+ D+ + L AE +G + L I+NR+ E
Sbjct: 122 AGIEAGFRNAVAPAQEAIIVTTPEMSAVRDADRVIGLLEAEDIGKISL--IVNRLRPEMV 179
Query: 179 ELSR----EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLA 234
+L++ E+I LL VP++G +P+D ++ ++ G PLV++ S +A++ IA +L
Sbjct: 180 QLNQMISVEDILDLLAVPLIGILPDDQKIIISTNKGEPLVMEEKLSVPGLAFQNIARRLE 239
Query: 235 G 235
G
Sbjct: 240 G 240
>gi|7524873 cell division inhibitor MinD [Chlorella vulgaris]
>gi|3024135|sp|P56346|MIND_CHLVU PUTATIVE SEPTUM
SITE-DETERMINING PROTEIN MIND >gi|7443732|pir||T07303
cell division inhibitor - Chlorella vulgaris chloroplast
>gi|2224467|dbj|BAA57951.1| (AB001684) cell division
inhibitor MinD [Chlorella vulgaris]
Length = 282
Score = 142 bits (355), Expect = 3e-33
Identities = 88/258 (34%), Positives = 147/258 (56%), Gaps = 7/258 (2%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R IV SGKGG GKTTT AN+G+++A+ G V LIDADI + NL L+LG+E+ + T D
Sbjct: 17 RVIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMD 76
Query: 63 VLAGEADLKDAIYEGPAGVKVIPGGLSLEKIK-KARAERLRDLIREISQMG-DFILIDAP 120
++ G+ L A+ + +S + K + +++LI + ++G F+LID P
Sbjct: 77 IVEGQCRLDQALIRDKRWKNLALLAISKNRQKYNVTRKNMQNLIDSVKELGFQFVLIDCP 136
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE- 179
AG+++ I A+ +E +IVT PEI AI D+ + + E G + ++NRV + +
Sbjct: 137 AGIDVGFINAIASAQEAVIVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQK 196
Query: 180 ---LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGI 236
+S +++ +L +P+LG +PED V ++ G PLV+ + + IA++ A +L G
Sbjct: 197 NDMMSVRDVQEMLGIPLLGAIPEDTSVIISTNKGEPLVLNKKLTLSGIAFENAARRLIGK 256
Query: 237 KWKPPEPESPVKRIFRAL 254
+ + SP K +F+ L
Sbjct: 257 QDYFIDLTSPQKGMFQKL 274
>emb|CAB53105.1| (AJ245645) cell division inhibitor MinD [Prototheca wickerhamii]
Length = 359
Score = 141 bits (352), Expect = 8e-33
Identities = 93/261 (35%), Positives = 144/261 (54%), Gaps = 7/261 (2%)
Query: 1 MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVT 59
+E R IV SGKGG GKTTT AN+G+++A+FG V LIDADI + NL L+LG+E+ I T
Sbjct: 91 LEPRVIVITSGKGGVGKTTTTANLGMSIARFGYRVALIDADIGLRNLDLLLGLENRITFT 150
Query: 60 LHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIK-KARAERLRDLIREISQMG-DFILI 117
D++ G L A+ + +S K + +R L+ I ++G + ILI
Sbjct: 151 AMDIIEGRCRLDQALVREKRWKNLALLAVSKNHQKYNVTQQHMRQLVFSIKELGINSILI 210
Query: 118 DAPAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSE- 176
D PAG+++ I A+ +E IIVT PEI AI D+ + + E + +LNRV +
Sbjct: 211 DCPAGIDVGFINAIAPAQEAIIVTTPEITAIRDADRVAGLLEANTIVDTKLLLNRVRMDM 270
Query: 177 ---KTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKL 233
T LS +++ L +P+LG +PED V ++ G PLV+ + + IA++ A +L
Sbjct: 271 IQNSTMLSIMDVQETLGIPLLGAIPEDTNVIISTNKGEPLVLDKKLTLSGIAFENAARRL 330
Query: 234 AGIKWKPPEPESPVKRIFRAL 254
G + + + P K I + +
Sbjct: 331 IGKEDYFVDLDIPTKSIIKKI 351
>dbj|BAA90628.1| (AP001129) Similar to Chlorella vulgaris C-27 chloroplast DNA, cell
division inhibitor MinD. (AB001684) [Oryza sativa]
Length = 306
Score = 139 bits (347), Expect = 3e-32
Identities = 92/270 (34%), Positives = 149/270 (55%), Gaps = 16/270 (5%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R +V SGKGG GKTTT AN+ +LA+ + +DAD + NL L+LG+E+ + +T D
Sbjct: 37 RVVVVTSGKGGVGKTTTTANLAASLARLSLSAVAVDADAGLRNLDLLLGLENRVHLTAAD 96
Query: 63 VLAGEADLKDAIYEGPA--GVKVIPGGLSLEKIKKARAER----LRDLIREISQMGDFIL 116
VLAG+ L A+ A ++++ K+ A + + D +R + FIL
Sbjct: 97 VLAGDCRLDQALVRHRALHDLQLLCLSKPRSKLPLAFGSKTLTWVADALRRAANPPAFIL 156
Query: 117 IDAPAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSE 176
ID PAG++ +TA+ +E ++VT P+I A+ D+ + + E G + I+NRV +
Sbjct: 157 IDCPAGVDAGFVTAIAPAEEAVLVTTPDITALRDADRVAGLLECDGIKDIKIIVNRVRPD 216
Query: 177 KTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAK 232
+ +S +++ +L +P+LG VPED EV R++ GVPLV+ +P +PA +A ++ +
Sbjct: 217 LVKGEDMMSALDVQEMLGLPLLGVVPEDAEVIRSTNRGVPLVLNDPPTPAGLALEQATWR 276
Query: 233 L----AGIKWKPPEPESPVKRI-FRALFGG 257
L A E E P K+ F + FGG
Sbjct: 277 LVERDAMTAVMVEEQERPKKKAGFFSFFGG 306
>dbj|BAB06746.1| (AP001517) septum site-determining protein [Bacillus halodurans]
Length = 264
Score = 136 bits (340), Expect = 2e-31
Identities = 90/265 (33%), Positives = 147/265 (54%), Gaps = 11/265 (4%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLH 61
G +IV SGKGG GKTTT ANIG ALA GK V L+D DI + NL +++G+E+ I L
Sbjct: 2 GEAIVITSGKGGVGKTTTSANIGTALALSGKKVCLVDTDIGLRNLDVVMGLENRIIYDLV 61
Query: 62 DVLAGEADLKDAIYEGP--AGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDA 119
DV+ G LK A+ + + ++P + +K E++++++ E+ Q D++LID
Sbjct: 62 DVVEGRCRLKQALIKDKRFECLNLLPAAQTKDK-SAVTPEQMKEIVEELKQEYDYVLIDC 120
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE 179
PAG+E A+ + I+VT PEI+++ D+ + + EK ++NR+ +
Sbjct: 121 PAGIEQGFKNAVAGADKAIVVTTPEISSVRDADRIIGLLEKEEVEAPRLVVNRIRGHMMK 180
Query: 180 ----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAG 235
L +EI ++L + +LG V +D V + S G P+ + +P S A++AY+ IA ++ G
Sbjct: 181 NGEMLDVDEIVSILAIELLGIVVDDENVIKFSNKGEPIAL-HPDSKASVAYRNIARRILG 239
Query: 236 --IKWKPPEPESPVKRIFRALFGGR 258
+ E E V ++ FG R
Sbjct: 240 ETVPLMSFEQEKGVLAKIKSFFGVR 264
>dbj|BAA90261.1| (AB030278) MinD [Arabidopsis thaliana] >gi|9758226|dbj|BAB08725.1|
(AB009056) septum site-determining MinD [Arabidopsis
thaliana]
Length = 326
Score = 136 bits (339), Expect = 3e-31
Identities = 94/274 (34%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R +V SGKGG GKTTT AN+G++LA++G V+ IDAD+ + NL L+LG+E+ + T +
Sbjct: 59 RIVVITSGKGGVGKTTTTANVGLSLARYGFSVVAIDADLGLRNLDLLLGLENRVNYTCVE 118
Query: 63 VLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARA-----------ERLRDLIREISQ- 110
V+ G+ L A+ L I K R+ E L D ++ +
Sbjct: 119 VINGDCRLDQALVRDKRW-----SNFELLCISKPRSKLPMGFGGKALEWLVDALKTRPEG 173
Query: 111 MGDFILIDAPAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAIL 170
DFI+ID PAG++ ITA+ E ++VT P+I A+ D+ + + E G + I+
Sbjct: 174 SPDFIIIDCPAGIDAGFITAITPANEAVLVTTPDITALRDADRVTGLLECDGIRDIKMIV 233
Query: 171 NRVTSEKTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAY 226
NRV ++ + +S +++ +L + +LG +PED EV R++ G PLV+ P + A +A+
Sbjct: 234 NRVRTDMIKGEDMMSVLDVQEMLGLSLLGVIPEDSEVIRSTNRGFPLVLNKPPTLAGLAF 293
Query: 227 KEIAAKLA---GIKWKPPEPESPVKRIFRALFGG 257
++ A +L +K E E P KR F + FGG
Sbjct: 294 EQAAWRLVEQDSMKAVMVE-EEPKKRGFFSFFGG 326
>gi|11467635 inhibition of cell division factor [Guillardia theta]
>gi|6016572|sp|O78436|MIND_GUITH PUTATIVE SEPTUM
SITE-DETERMINING PROTEIN MIND >gi|3602960|gb|AAC35621.1|
(AF041468) inhibition of cell division factor
[Guillardia theta]
Length = 269
Score = 134 bits (335), Expect = 8e-31
Identities = 88/264 (33%), Positives = 148/264 (55%), Gaps = 12/264 (4%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R +V SGKGG GKTT AN+G+ALAQ G LIDADI + NL L+LG+E+ + T +
Sbjct: 3 RIVVITSGKGGVGKTTVTANLGMALAQLGYRTALIDADIGLRNLDLLLGLENRVIYTALE 62
Query: 63 VLAGEADLKDAIYEG--PAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAP 120
VL+GE L+ A+ + + ++P + K E+++ L+ + D++LID P
Sbjct: 63 VLSGECRLEQALIKDKRQPNLVLLPAAQNRNK-DSVTEEQMKFLVNLLVNDYDYLLIDCP 121
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE- 179
AG+E A+ +E I+VT PEIAA+ D+ + + E G + ++NR+ + +
Sbjct: 122 AGIETGFHNAIGPAQEAIVVTTPEIAAVRDADRVIGLLEANGIKQIKLLVNRLRPQMVKA 181
Query: 180 ---LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGI 236
+S ++ +L +P++G +PED V ++ G PLV++ S +A++ A +L G
Sbjct: 182 NDMMSVADVREILAIPLIGVIPEDECVIVSTNRGEPLVLEKNLSLPGLAFEHTACRLDGQ 241
Query: 237 KWKPPEPES----PVKRIFRALFG 256
+ + + +S P+KR+ R G
Sbjct: 242 EIEFLDLQSYSRGPLKRLRRFFLG 265
>gi|11466429 septum-site determining protein [Mesostigma viride]
>gi|7259572|gb|AAF43873.1|AF166114_85 (AF166114)
septum-site determining protein [Mesostigma viride]
Length = 286
Score = 134 bits (333), Expect = 1e-30
Identities = 83/243 (34%), Positives = 137/243 (56%), Gaps = 11/243 (4%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R+IV SGKGG GKTTT AN+G+++A+ G V LIDAD+ + NL L+LG+E+ + T +
Sbjct: 18 RTIVITSGKGGVGKTTTTANLGMSIARLGYKVALIDADVGLRNLDLLLGLENRVIYTAME 77
Query: 63 VLAGEADLKDAIYEGPAGVKVIPGGLSLEK----IKKARAERLRDLIREISQMGDFILID 118
V GE L A+ + +S + + + E L D IR + +FILID
Sbjct: 78 VFEGECCLDQALIRDKRWSNLALLAISKTRQRYHLTRRNMEMLVDSIR--LRNYNFILID 135
Query: 119 APAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKT 178
PAG+++ + A+ +E ++VT PEI +I D+ + + E G + ++NRV +
Sbjct: 136 CPAGIDVGFVNAVAPAEEAVVVTTPEITSIRDADRVAGLLEASGIYEVKLLVNRVRPDMI 195
Query: 179 E----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLA 234
+ LS +++ +L +P+LG +PED V ++ G PLV+ + + I+++ A +L
Sbjct: 196 QKNDMLSVRDVQEMLGIPLLGAIPEDTNVIVSTNRGQPLVLNKKLTLSGISFENAARRLV 255
Query: 235 GIK 237
G K
Sbjct: 256 GRK 258
>gi|11499521 cell division inhibitor (minD-2) [Archaeoglobus fulgidus]
>gi|7443739|pir||H69491 cell division inhibitor (minD-2)
homolog - Archaeoglobus fulgidus
>gi|2648607|gb|AAB89318.1| (AE000970) cell division
inhibitor (minD-2) [Archaeoglobus fulgidus]
Length = 252
Score = 133 bits (332), Expect = 2e-30
Identities = 75/225 (33%), Positives = 131/225 (57%), Gaps = 6/225 (2%)
Query: 10 SGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLAGEAD 69
SGK GK+T N+ V +AQ V +ID D ++ LS + ++D+P+T +V+ G A
Sbjct: 9 SGKESEGKSTLTVNLSVLMAQKDYRVAVIDFDPSLPALSSLCKVDDVPLTAKNVIDGFAS 68
Query: 70 LKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAGLELTSIT 129
+ D Y G +GV+VIP G+S+++ +KA LRDL+ + + D + +D P GL S+
Sbjct: 69 VDDIFYSGISGVEVIPAGMSIKEFRKA---NLRDLLERVEESADVLFLDVPGGLCHDSVL 125
Query: 130 ALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSREEIEALL 189
A+ +++V PE A++ +L + EKL G +LN+V E+ E+ +++EAL+
Sbjct: 126 AIYAATSVLLVIKPEAASLEAALPLPRIIEKLKADFAGVVLNKV--EEGEVEIDDVEALI 183
Query: 190 EVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLA 234
V+ +P D +K+A A G P++ +P S ++ ++ EI+ L+
Sbjct: 184 G-NVIAEIPYDEAIKKAMASGRPVIFSSPMSESSKSFVEISEALS 227
>sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|322178|pir||G45239 cell division inhibitor minD
[validated] - Bacillus subtilis
>gi|142859|gb|AAA22401.1| (M96343) MinD protein
[Bacillus subtilis] >gi|143216|gb|AAA22609.1| (M95582)
putative [Bacillus subtilis] >gi|580893|emb|CAA78818.1|
(Z15113) MinD [Bacillus subtilis]
>gi|2635264|emb|CAB14759.1| (Z99118) ATPase activator of
MinC [Bacillus subtilis]
Length = 268
Score = 132 bits (330), Expect = 3e-30
Identities = 83/242 (34%), Positives = 143/242 (58%), Gaps = 11/242 (4%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLH 61
G +IV SGKGG GKTTT AN+G ALA GK V L+D DI + NL +++G+E+ I L
Sbjct: 2 GEAIVITSGKGGVGKTTTSANLGTALAILGKRVCLVDTDIGLRNLDVVMGLENRIIYDLV 61
Query: 62 DVLAGEADLKDAIYEGPAG---VKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILID 118
DV+ G + A+ + + ++P + +K A E+++++++E+ Q D+++ID
Sbjct: 62 DVVEGRCKMHQALVKDKRFDDLLYLMPAAQTSDKTAVA-PEQIKNMVQELKQEFDYVIID 120
Query: 119 APAGLELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTSEK 177
PAG+E A+ + I+VT PEI+A+ D+ + L+ ++ P ++NR+ +
Sbjct: 121 CPAGIEQGYKNAVSGADKAIVVTTPEISAVRDADRIIGLLEQEENIEPPRLVVNRIRNHL 180
Query: 178 TE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKL 233
+ + +EI L + +LG V +D EV +AS +G P+ + +P + A+IAY+ IA ++
Sbjct: 181 MKNGDTMDIDEIVQHLSIDLLGIVADDDEVIKASNHGEPIAM-DPKNRASIAYRNIARRI 239
Query: 234 AG 235
G
Sbjct: 240 LG 241
>gi|11467859 septum-site determining protein [Nephroselmis olivacea]
>gi|11467886|ref|NP_050937.1| septum-site determining
protein [Nephroselmis olivacea]
>gi|5880788|gb|AAD54881.1|AF137379_104 (AF137379)
septum-site determining protein [Nephroselmis olivacea]
>gi|5880815|gb|AAD54908.1|AF137379_131 (AF137379)
septum-site determining protein [Nephroselmis olivacea]
Length = 274
Score = 132 bits (330), Expect = 3e-30
Identities = 84/258 (32%), Positives = 140/258 (53%), Gaps = 9/258 (3%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R IV SGKGG GKTT AN+G+ +A+ G V LIDADI + NL L+LG+E+ + T +
Sbjct: 14 RVIVITSGKGGVGKTTATANLGMCIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAME 73
Query: 63 VLAGEADLKDAIYEGPAGVKVIPGGLSLEKIK-KARAERLRDLIREISQMG-DFILIDAP 120
V+ G+ L+ A+ + +S + + + + ++ I + G +ILID P
Sbjct: 74 VIEGQCRLEQALIRDKRWKNLSMLAMSKNRQRYNMTRKNMMMIVDSIKERGYQYILIDCP 133
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE- 179
AG++ + A+ E I+VT PEI AI D+ + + E + + NRV E +
Sbjct: 134 AGIDAGFVNAIAPADEAILVTTPEITAIRDADRVAGLLEANDFYNVRLVANRVRPEMIQQ 193
Query: 180 ---LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGI 236
+S ++++ ++ VP+LG +PED V ++ G PLV + + A +A++E A +L G+
Sbjct: 194 NDMMSVDDVQGMIGVPLLGAIPEDKNVIISTNRGEPLVCQKTITLAGVAFEEAARRLVGL 253
Query: 237 KWKPPEPESPVKRIFRAL 254
P +P + F A+
Sbjct: 254 --PSPSDSAPSRGWFAAI 269
>pir||C82136 septum site-determining protein MinD VC1960 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656499|gb|AAF95108.1| (AE004271) septum
site-determining protein MinD [Vibrio cholerae]
Length = 276
Score = 129 bits (322), Expect = 3e-29
Identities = 95/271 (35%), Positives = 147/271 (54%), Gaps = 20/271 (7%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME-DIPVTLHD 62
R IV SGKGG GKTT+ A I LA GK +ID DI + NL LI+G E + +
Sbjct: 9 RIIVVTSGKGGVGKTTSSAAIASGLALRGKKTAVIDFDIGLRNLDLIMGCERRVVYDFVN 68
Query: 63 VLAGEADLKDAIYEGP--AGVKVIPGGLSLEKIKKARAERLRDLIREISQMG-DFILIDA 119
V+ GEA L A+ + + ++P + +K + + ++ ++ ++ +MG DFI+ D+
Sbjct: 69 VINGEATLNQALIKDKRNENLFILPASQTRDKDALTK-DGVQRVLNDLKEMGFDFIICDS 127
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDS------LKTKLVAEKLGTLPLGAIL--- 170
PAG+E ++ AL E I+ TNPE++++ DS L +K + + G P+ L
Sbjct: 128 PAGIEQGALMALYYADEAIVTTNPEVSSVRDSDRILGILDSKSMRAEQGQAPIKQHLLLT 187
Query: 171 ----NRVTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAY 226
RVT + LS +++E +L VP+LG +PE V AS GVP V+ + S A AY
Sbjct: 188 RYNPARVTQGEM-LSVQDVEEILHVPLLGVIPESQAVLNASNKGVP-VIFDDQSDAGQAY 245
Query: 227 KEIAAKLAGIKWKPPEPESPVKRIFRALFGG 257
++ A+L G + + K IF+ LFGG
Sbjct: 246 QDTVARLLGEQVEFRFLTEAKKGIFKRLFGG 276
>pir||C81230 septum site-determining protein MinD NMB0171 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7225389|gb|AAF40628.1| (AE002374) septum
site-determining protein MinD [Neisseria meningitidis
MC58] >gi|7378872|emb|CAB83415.1| (AL162752) septum
site-determining protein [Neisseria meningitidis Z2491]
Length = 271
Score = 128 bits (319), Expect = 6e-29
Identities = 93/269 (34%), Positives = 151/269 (55%), Gaps = 19/269 (7%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME-DIPVTLHDVL 64
IV SGKGG GKTTT A+I LA G +ID D+ + NL LI+G E + L +V+
Sbjct: 5 IVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLRNLDLIMGCERRVVYDLINVI 64
Query: 65 AGEADLKDAIYEGP--AGVKVIPGGLSLEKIKKARAERLRDLIREIS--QMG-DFILIDA 119
GEA L A+ + + ++P + +K R E + +++E+S +MG ++I+ D+
Sbjct: 65 QGEATLNQALIKDKNCENLFILPASQTRDKDALTR-EGVEKVMQELSGKKMGFEYIICDS 123
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDS------LKTKL-VAEKLGTLPLGAILNR 172
PAG+E ++ AL E I+ TNPE++++ DS L++K AE+ G++ ++ R
Sbjct: 124 PAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILGILQSKSHKAEQGGSVKEHLLITR 183
Query: 173 VTSEKTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKE 228
+ E+ LS ++I +L +P+LG +PE V +AS G P V+ + A+ AYK+
Sbjct: 184 YSPERVAKGEMLSVQDICDILHIPLLGVIPESQNVLQASNSGEP-VIHQDSVAASEAYKD 242
Query: 229 IAAKLAGIKWKPPEPESPVKRIFRALFGG 257
+ A+L G + E+ K F+ LFGG
Sbjct: 243 VIARLLGENREMRFLEAEKKSFFKRLFGG 271
>sp|P57411|MIND_BUCAI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|10039000|dbj|BAB13034.1| (AP001119) septum
site-determining protein minD [Buchnera sp. APS]
Length = 270
Score = 127 bits (317), Expect = 1e-28
Identities = 90/268 (33%), Positives = 136/268 (50%), Gaps = 16/268 (5%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME-DIPVTLHD 62
R IV SGKGG GKTT+ A IG LAQ GK I+ID DI + NL LI+G E + +
Sbjct: 3 RIIVVTSGKGGVGKTTSSAAIGTGLAQKGKKTIVIDFDIGLRNLDLIMGCERRVVYDFIN 62
Query: 63 VLAGEADLKDAIYEGPA--GVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAP 120
V+ G+A L AI + + ++P + +K R + L I DFI+ D+P
Sbjct: 63 VIQGDATLNQAIIKDKKTNNLFILPASQTRDKDALTRIGVEKVLTELIKMNFDFIICDSP 122
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITD--------SLKTKLVAEKLGTLPLGAILNR 172
AG+E +I A+ E II TNPE++++ D S K+K + + + +L R
Sbjct: 123 AGIETGAILAIYFADEAIITTNPEVSSVRDSDRILGIISSKSKRAEKNITPIKEYLLLTR 182
Query: 173 VTSEKTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKE 228
+ + LS ++ +L++P++G +PED V RAS G +++ + S A AY +
Sbjct: 183 YNPRRVKKGEMLSMTDVLDILQIPIIGVIPEDQSVLRASNQGESIIL-DINSNAGCAYSD 241
Query: 229 IAAKLAGIKWKPPEPESPVKRIFRALFG 256
+L G + E K R LFG
Sbjct: 242 TVNRLLGEERHFRFIEEEKKSFLRRLFG 269
>pir||F70375 cell division inhibitor (septum placement) minD2 - Aquifex aeolicus
>gi|2983413|gb|AAC06996.1| (AE000712) septum
site-determining protein MinD [Aquifex aeolicus]
Length = 262
Score = 126 bits (314), Expect = 2e-28
Identities = 85/239 (35%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHDVL 64
IV SGKGG GKTT ANIG ALA+ GK V+LIDADI + NL +ILG+E+ I + DVL
Sbjct: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
Query: 65 AGEADLKDAIYEGPAGVK--VIPGGLSLEKIKKARAERLRDLIREISQMG--DFILIDAP 120
G + A+ + G+ ++P K E+ + EI G D+IL+D+P
Sbjct: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANK-DVIDIEKWNKTVEEIKNSGNYDYILVDSP 123
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE- 179
AG+E A+ + +IV NPE+++I D+ + + E + I+NR+ E +
Sbjct: 124 AGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVKR 183
Query: 180 ---LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAG 235
LS E+I +L+ ++G +PE+P++ + G P+V+ + PA+ A + A +L G
Sbjct: 184 GAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVL-DEKFPASQAIIDTARRLMG 241
>pir||F71191 hypothetical protein PH1806 - Pyrococcus horikoshii
>gi|3258242|dbj|BAA30925.1| (AP000007) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 122 bits (303), Expect = 4e-27
Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 13/236 (5%)
Query: 5 SIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVL 64
+++ +G+GG GKTTT AN+ AQ G V+ ID D+ + NL L ++++ TLH ++
Sbjct: 2 AVIVVTGRGGAGKTTTTANLSTYFAQSGYRVLAIDGDLYLPNLGLHFALDNVKYTLHSIV 61
Query: 65 AG-EADLKDAIY-EGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
D + AIY GV V+PG LE + +RL+D+I + I +D+P G
Sbjct: 62 KNPNMDPEWAIYRHEQTGVYVMPGSPRLEDVLGVSGQRLKDIIEHLKYKYPLIFVDSPTG 121
Query: 123 LELTSITALLIGKELIIVTNPEIAAI--------TDSLKTKLVAEKLGTLPLGAILNRVT 174
+ ++ A IIV E + I + LK K + +K L +G ++N+V
Sbjct: 122 IPFDTLPAFESFNYQIIVVEVERSPIYSFETMVENEVLKLKALGDKF-KLEVGVVINKVR 180
Query: 175 SEKTELSR--EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKE 228
+ + E IE + VPVLG +P D V + G+P++V P S AA+A+KE
Sbjct: 181 EAADVMDKIVEVIEEDIGVPVLGVIPFDDSVPESINIGIPVLVYKPRSDAALAFKE 236
>sp|P18197|MIND_ECOLI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|72935|pir||CCECID cell division inhibitor minD -
Escherichia coli >gi|146867|gb|AAB59062.1| (J03153) MinD
protein [Escherichia coli] >gi|1651574|dbj|BAA36009.1|
(D90751) Cell division inhibitor MinD. [Escherichia
coli] >gi|1651578|dbj|BAA36022.1| (D90752) Cell division
inhibitor MinD. [Escherichia coli]
>gi|1787423|gb|AAC74259.1| (AE000216) cell division
inhibitor, a membrane ATPase, activates minC
[Escherichia coli K12]
Length = 270
Score = 118 bits (294), Expect = 5e-26
Identities = 90/270 (33%), Positives = 139/270 (51%), Gaps = 18/270 (6%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME-DIPVTLHD 62
R IV SGKGG GKTT+ A I LAQ GK ++ID DI + NL LI+G E + +
Sbjct: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62
Query: 63 VLAGEADLKDAIYEG--PAGVKVIPGGLSLEKIKKARAERLRDLIREISQMG-DFILIDA 119
V+ G+A L A+ + + ++P + +K R E + ++ ++ M +FI+ D+
Sbjct: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTR-EGVAKVLDDLKAMDFEFIVCDS 121
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDS------LKTKLVAEKLGTLPL--GAILN 171
PAG+E ++ AL E II TNPE++++ DS L +K + G P+ +L
Sbjct: 122 PAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLT 181
Query: 172 RV----TSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYK 227
R S LS E++ +L + ++G +PED V RAS G P V+ + + A AY
Sbjct: 182 RYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEP-VILDINADAGKAYA 240
Query: 228 EIAAKLAGIKWKPPEPESPVKRIFRALFGG 257
+ +L G + E K + LFGG
Sbjct: 241 DTVERLLGEERPFRFIEEEKKGFLKRLFGG 270
>pir||C82695 septum site-determining protein XF1321 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9106316|gb|AAF84130.1|AE003965_3 (AE003965) septum
site-determining protein [Xylella fastidiosa]
Length = 269
Score = 117 bits (291), Expect = 1e-25
Identities = 86/267 (32%), Positives = 137/267 (51%), Gaps = 17/267 (6%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME-DIPVTLHDVL 64
IV SGKGG GKTTT A++ LA+ GK V++ID D+ + NL LI+G E + +V+
Sbjct: 5 IVITSGKGGVGKTTTSASLACGLARRGKKVVVIDFDVGLRNLDLIMGCERRVVYDFVNVI 64
Query: 65 AGEADLKDAIYEGPAGVKVIPGGLSLEKIKKA-RAERLRDLIREISQMG-DFILIDAPAG 122
GEA LK A+ + + + + K A E + ++ E+ G D+I D+PAG
Sbjct: 65 DGEATLKQALIKDKRFDNLYLLAAAQTRDKDALTKEGVEKVLNELQAEGFDYICCDSPAG 124
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDS--------LKTKLVAEKLGTLPLGAILNRVT 174
+E + A+ ++V NPE++++ DS KTK AE G++ +L R +
Sbjct: 125 IEKGASLAMYFADRAVVVVNPEVSSVRDSDRIIGLLDSKTK-KAETGGSIITTLLLTRYS 183
Query: 175 SEKTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIA 230
+ E LS ++E +L + +G +PE +V AS G P+++ N S A +AY++
Sbjct: 184 PARVESGEMLSIADVEEVLGLKAIGVIPESGDVLNASNKGEPVILDN-NSLAGLAYEDAV 242
Query: 231 AKLAGIKWKPPEPESPVKRIFRALFGG 257
++ G K F LFGG
Sbjct: 243 GRILGEDHPMRFTTVEKKGFFSKLFGG 269
>gb|AAF33831.1|AF226282_5 (AF226282) hypothetical flagellar biosynthesis switch protein
[Xanthomonas oryzae pv. oryzae]
Length = 319
Score = 116 bits (288), Expect = 2e-25
Identities = 82/250 (32%), Positives = 133/250 (52%), Gaps = 15/250 (6%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R+I GKGG GKT AN+ VALA GK +L+DAD+ +ANL ++LG+ TL D+
Sbjct: 52 RTIAVTGGKGGVGKTNISANLAVALADMGKRTLLLDADLGLANLDVVLGLAP-KYTLADL 110
Query: 64 LAGEADLKDAIYEGPAGVKVIP---GGLSLEKIKKARAERLRDLIREISQMGDFILIDAP 120
+AG L + I EGP GV V+P G + ++ A+ L ++ E+ + D ++ID
Sbjct: 111 IAGRCTLDEVIIEGPGGVLVVPAASGRRHMAELAPAQHIGLVNVFSELERDLDVMVIDTA 170
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTSEK-- 177
AG+ + +T ++ ++V E A+ITD+ K+++ + G L I N V
Sbjct: 171 AGITDSVLTFCQAAQDTVVVVCDEPASITDAYALIKVLSRERGVDRLQIIANMVRDPNEG 230
Query: 178 ----TELSR--EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAA 231
+LSR E+ + + LG VP+D ++ + P++ P SP+A A EIA
Sbjct: 231 RLLYDKLSRVCEKFLGDVSLNYLGHVPQDDWLRLSVQRQQPVIKAYPASPSAQAIAEIAR 290
Query: 232 KLAGIKWKPP 241
+ + +W+ P
Sbjct: 291 RTS--RWQAP 298
>pir||H75150 cell division inhibitor (mind-3) PAB2105 - Pyrococcus abyssi
(strain Orsay) >gi|5457797|emb|CAB49287.1| (AJ248284)
cell division inhibitor (minD-3) [Pyrococcus abyssi]
Length = 251
Score = 115 bits (284), Expect = 7e-25
Identities = 76/236 (32%), Positives = 122/236 (51%), Gaps = 14/236 (5%)
Query: 5 SIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVL 64
+++ +G+GG GKTTT AN+ AQ G V+ ID D+ + NL L ++++ TLH ++
Sbjct: 2 AVIVVTGRGGAGKTTT-ANLSTYFAQAGYRVLAIDGDLYLPNLGLHFALDNVKYTLHSIV 60
Query: 65 AG-EADLKDAIYEGP-AGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
D + AIY GV V+PG LE + +RL+D+I + I +D+P G
Sbjct: 61 KNPNMDPEWAIYRHEQTGVYVMPGSPRLEDVLGVSGQRLKDVIENLKYKYPVIFVDSPTG 120
Query: 123 LELTSITALLIGKELIIVTNPEIAAI--------TDSLKTKLVAEKLGTLPLGAILNRVT 174
+ ++ A IIV E + I + LK K + ++ L +G ++N+V
Sbjct: 121 VPFDTLPAFESFNYQIIVVEIERSPIYSFETMVENEVLKLKALGDRF-KLDVGVVINKVR 179
Query: 175 SEKTELSR--EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKE 228
+ + E IE + VPVLG +P D V + G+P++V P S AA+A+KE
Sbjct: 180 EAADVIDKIVETIEEDIGVPVLGVIPFDDAVPESINVGIPVLVYKPRSDAALAFKE 235
>pir||F83239 cell division inhibitor MinD PA3244 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949367|gb|AAG06632.1|AE004747_5 (AE004747) cell
division inhibitor MinD [Pseudomonas aeruginosa]
Length = 271
Score = 114 bits (283), Expect = 1e-24
Identities = 84/268 (31%), Positives = 138/268 (51%), Gaps = 17/268 (6%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME-DIPVTLHDVL 64
+V SGKGG GKTTT A IG LA G +++D D+ + NL LI+G E + +V+
Sbjct: 5 LVVTSGKGGVGKTTTSAAIGTGLALRGFKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVV 64
Query: 65 AGEADLKDAIYEGP--AGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
GEA L A+ + + V+ + +K + E + ++ E+ + ++I+ D+PAG
Sbjct: 65 NGEATLTQALIKDKRLENLHVLAASQTRDKDALTK-EGVEKVMAELRKDFEYIICDSPAG 123
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDS------LKTKLVAEKLGTLPL--GAILNRVT 174
+E + A+ E I+VTNPE++++ DS L +K + G P+ +L R
Sbjct: 124 IEKGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSQRAEKGEEPIKEHLLLTRYN 183
Query: 175 SEKTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIA 230
E+ L +++E +L + +LG +PE V +AS GVP V+ + S A AY +
Sbjct: 184 PERVTKGEMLGVDDVEEILAIRLLGVIPESQAVLKASNQGVP-VILDEQSDAGQAYSDAV 242
Query: 231 AKLAGIKWKPPEPESPVKRIFRALFGGR 258
+L G + + K + LFGGR
Sbjct: 243 DRLLGKEIPHRFLDVQKKGFLQRLFGGR 270
>sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443735|pir||A72200 septum site-determining protein
MinD - Thermotoga maritima (strain MSB8)
>gi|4982456|gb|AAD36932.1|AE001824_1 (AE001824) septum
site-determining protein MinD [Thermotoga maritima]
Length = 271
Score = 114 bits (282), Expect = 1e-24
Identities = 74/242 (30%), Positives = 136/242 (55%), Gaps = 11/242 (4%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLH 61
G IV SGKGG GKTT AN+G ALA+ G+ V LIDADI + NL ++LG+E+ I T+
Sbjct: 2 GNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTMI 61
Query: 62 DVLAGEADLKDAI--YEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDA 119
DV+ G+ ++A+ ++ + ++P K + ++ +++E+ D+I+ID+
Sbjct: 62 DVVNGKVSPQEALVKHKMLKNLYLLPASQIATK-EMISPNDMKAIVKELIPHFDYIIIDS 120
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLG--TLPLGAILNR----V 173
PAG+E A+ + +++VT PE+ AI+D+ + + E G + I+NR +
Sbjct: 121 PAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIINRFKPHM 180
Query: 174 TSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKL 233
+ L+ ++I+ L + ++ +P+ ++ AS G+P V N S + ++ +A ++
Sbjct: 181 VKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIP-VSLNGNSRISKNFENLARRI 239
Query: 234 AG 235
G
Sbjct: 240 RG 241
>pir||D75478 septum site-determining protein - Deinococcus radiodurans (strain
R1) >gi|6458463|gb|AAF10331.1|AE001931_2 (AE001931)
septum site-determining protein [Deinococcus
radiodurans]
Length = 276
Score = 111 bits (276), Expect = 6e-24
Identities = 80/269 (29%), Positives = 140/269 (51%), Gaps = 15/269 (5%)
Query: 1 MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVT 59
M+ + IV SGKGG GKTTT ANIG ALA+ G+ V++ID D+ + NL +++G+E +
Sbjct: 9 MDAKVIVVTSGKGGVGKTTTTANIGAALARLGEKVVVIDVDVGLRNLDVVMGLESRVVFD 68
Query: 60 LHDVLAGEADLKDAIYEGP--AGVKVIPGGLSLEKIKKARAERLRDLIREISQMGDF--I 115
L DVL G+ + A+ + ++P + +K E +++++ + + F +
Sbjct: 69 LVDVLEGKCRMNQALIRDKRVENLHLLPASQTRDK-DALDPEVFKEVVKGLLEEEGFDRV 127
Query: 116 LIDAPAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNR--- 172
LID+PAG+E TA + ++V NPE++++ D+ + + E + ++NR
Sbjct: 128 LIDSPAGIESGFRTAAAPAEGALVVVNPEVSSVRDADRIIGLLEAQQITEIRLVVNRLRP 187
Query: 173 -VTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAA 231
+ + LS +++ +L V +G VPED + ++ G P V+ + A A+ A
Sbjct: 188 KMVASGNMLSIDDMVDILGVKPIGIVPEDEGIIVSTNVGEPAVLGK--TKAGDAFMATAQ 245
Query: 232 KLAGIKWKPP---EPESPVKRIFRALFGG 257
++ G P E E + R LFGG
Sbjct: 246 RIQGQDVPFPKLTEEEKGIWAAIRRLFGG 274
>pir||D71290 probable ATP-binding protein (ylxH-1) - syphilis spirochete
>gi|1216385|gb|AAB00552.1| (U36839) orf304 gene product
[Treponema pallidum] >gi|3323014|gb|AAC65678.1|
(AE001244) ATP-binding protein (ylxH-1) [Treponema
pallidum]
Length = 304
Score = 109 bits (269), Expect = 4e-23
Identities = 75/243 (30%), Positives = 124/243 (50%), Gaps = 15/243 (6%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIP-VTLHD 62
R +V SGKGG GKT N+ +A GK V+LIDAD+ +AN+++I+ + +P L+
Sbjct: 40 RVVVVTSGKGGVGKTNIATNMAIAYGYMGKKVVLIDADLGLANVNVIMNV--VPQYNLYH 97
Query: 63 VLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMG--DFILIDAP 120
V+ + + D I + G+K+I G KI E I+E+ + D I+ID
Sbjct: 98 VIKKQKKMSDIIIDTNFGIKLIAGASGFSKIANLNEEERAAFIQELYSLSETDIIIIDTS 157
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSL-KTKLVAEKLGT--LPLGAILNRVTS-- 175
AG+ ++ + ++I+VT E AITD+ K++A ++ + L I+NRV S
Sbjct: 158 AGVSKNVVSFVASADDVIVVTTAEPTAITDAYGMIKIIATEVDNRDMNLKMIVNRVNSAA 217
Query: 176 EKTELSREEIEAL-----LEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIA 230
E +S I+ L++ LG + +D V + VP ++ P A++ + I
Sbjct: 218 EGRRISERMIQIAAQFLNLKLDYLGFIYDDTSVGASVLRQVPFLIHEPRGKASVCLRHIV 277
Query: 231 AKL 233
AKL
Sbjct: 278 AKL 280
>gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa]
Length = 275
Score = 106 bits (263), Expect = 2e-22
Identities = 73/254 (28%), Positives = 130/254 (50%), Gaps = 20/254 (7%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I GKGG GKT N+ +ALA G+ V+L+DAD+ +AN+ ++LG+ TL DV+
Sbjct: 9 IAVTGGKGGVGKTNVSVNLSLALADLGRRVMLLDADLGLANVDVLLGLSP-KRTLADVIE 67
Query: 66 GEADLKDAIYEGPAGVKVIP---GGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
GE DL+D I +GP G++++P G S+ + + L +IS D +++D AG
Sbjct: 68 GECDLRDVILQGPGGIRIVPAASGTQSMVHLTPMQHAGLIQAFSDISDNIDVLVVDTAAG 127
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTSEK---- 177
+ + ++ + +E+++V E +ITD+ KL+ G + N S +
Sbjct: 128 IGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRHYGMTRFRVLANMAHSPQEGRN 187
Query: 178 -----TELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAK 232
T+++ ++ L+ +G +P D V++A + P S A++A++ +A K
Sbjct: 188 LFAKLTKVTDRFLDVALQ--YVGAIPYDESVRKAVQKQRSVYEAFPRSKASLAFRAVAQK 245
Query: 233 LAGIKWKPPEPESP 246
+ W P P +P
Sbjct: 246 VD--SW--PLPANP 255
>sp|O25098|MIND_HELPY SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443731|pir||C64561 cell division inhibitor minD -
Helicobacter pylori (strain 26695)
>gi|2313432|gb|AAD07400.1| (AE000551) cell division
inhibitor (minD) [Helicobacter pylori 26695]
Length = 268
Score = 104 bits (256), Expect = 1e-21
Identities = 75/243 (30%), Positives = 125/243 (50%), Gaps = 15/243 (6%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHDVL 64
+ SGKGG GK+TT AN+ + LA+ GK V+ +D DI + NL +ILG+E+ I + DV+
Sbjct: 5 VTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVM 64
Query: 65 AGEADLKDAIYEGPAGVKVIPGGLSLEKIKK-ARAERLRDLIREISQMGDFILIDAPAGL 123
+L A+ + S K K E++ LI + D+ILID+PAG+
Sbjct: 65 EKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGI 124
Query: 124 ELTSITALLIGKELIIVTNPEIAAITDSLKTKLV-------AEKLGTLPLGAILNRVTSE 176
E A+L ++V PE++++ DS + + A+K + I+NR+ E
Sbjct: 125 ESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLIINRLKPE 184
Query: 177 KTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAK 232
+S EE+ +L +P++G +PED + A+ G P++ +A AY+ I +
Sbjct: 185 LVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVI--RTDCESAKAYQRITRR 242
Query: 233 LAG 235
+ G
Sbjct: 243 ILG 245
>gb|AAF32413.1| (AF069392) flagellar biosynthesis protein FlhG [Vibrio
parahaemolyticus]
Length = 295
Score = 104 bits (256), Expect = 1e-21
Identities = 80/252 (31%), Positives = 130/252 (50%), Gaps = 16/252 (6%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I GKGG GK+ + + +A+ GK V+++DAD+ +AN+ ++LG+ L VLA
Sbjct: 25 IAVTGGKGGVGKSNVTLGLAICMARQGKKVMVLDADLGLANVDVMLGIRP-KRNLGHVLA 83
Query: 66 GEADLKDAIYEGPAGVKVIP---GGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
GE +LKDAI EGP G+K+IP G S+ ++ A+ L + D +LID AG
Sbjct: 84 GECELKDAIVEGPYGIKIIPATSGTQSMTELSHAQHAGLIRAFGSLEDEMDILLIDTAAG 143
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTS--EKTE 179
+ I+ +++++V E +ITD+ KL++++ + N V S E E
Sbjct: 144 ISDMVISFSRAAQDVVVVVCDEPTSITDAYALIKLLSKEHQVQRFKVVANMVRSYREGRE 203
Query: 180 LSRE---EIEALLEV--PVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLA 234
L + E L V ++ +P D +V++A +V P SPAA+A +A K
Sbjct: 204 LFAKLTLVTERFLNVSLELVACIPLDDKVRQAVKRQKIVVDAFPRSPAALAISSLANK-- 261
Query: 235 GIKWKPPEPESP 246
+ W P P++P
Sbjct: 262 ALMW--PLPKTP 271
>sp|Q9ZMA8|MIND_HELPJ SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443730|pir||B71945 cell division inhibitor -
Helicobacter pylori (strain J99)
>gi|4154852|gb|AAD05905.1| (AE001468) cell division
inhibitor [Helicobacter pylori J99]
Length = 268
Score = 103 bits (255), Expect = 2e-21
Identities = 76/243 (31%), Positives = 124/243 (50%), Gaps = 15/243 (6%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHDVL 64
+ SGKGG GK+TT AN+ + LA+ GK V+ +D DI + NL +ILG+E+ I + DV+
Sbjct: 5 VTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVM 64
Query: 65 AGEADLKDAIYEGPAGVKVIPGGLSLEKIKK-ARAERLRDLIREISQMGDFILIDAPAGL 123
+L A+ + S K K E++ LI + D+ILID+PAG+
Sbjct: 65 EKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGI 124
Query: 124 ELTSITALLIGKELIIVTNPEIAAITDS------LKTKLVAEKLG-TLPLGAILNRVTSE 176
E A+L ++V PE++++ DS + K K G + I+NR+ E
Sbjct: 125 ESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEEVHKHLIINRLKPE 184
Query: 177 KTE----LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAK 232
+S EE+ +L +P++G +PED + A+ G P++ +A AY+ I +
Sbjct: 185 LVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVI--RTDCESAKAYQRITRR 242
Query: 233 LAG 235
+ G
Sbjct: 243 ILG 245
>sp|P40742|YLXH_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN FLHF-CHEB INTERGENIC REGION
(ORF298) >gi|2127066|pir||I40434 flagellar biosynthesis
switch protein homolog ylxH - Bacillus subtilis
>gi|580903|emb|CAA52034.1| (X73682) orf298 [Bacillus
subtilis] >gi|2634013|emb|CAB13514.1| (Z99112) similar
to flagellar biosynthesis switch protein [Bacillus
subtilis]
Length = 298
Score = 101 bits (249), Expect = 9e-21
Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 12/243 (4%)
Query: 2 EGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLH 61
+ +++ SGKGG GK+ N+ +AL GK V+LID DI M N+ +++G T+
Sbjct: 30 KAKTLAVISGKGGVGKSNITLNMALALQDKGKKVLLIDLDIGMGNIDILIG-NSSSATII 88
Query: 62 DVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREIS---QMGDFILID 118
DVL L ++ GP G++ I GG L+ + + + E+S D++L D
Sbjct: 89 DVLTDRKPLLQSLSVGPKGLRYISGGTGLDVMFQLDQRKWTFFANELSHALSQFDYVLFD 148
Query: 119 APAGLELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTSEK 177
AGL + +L ++++I+T PE AI D+ K + L + +NR +K
Sbjct: 149 MGAGLSKDQLPFILSAEDILIITTPEPTAIMDAYSAVKHLVLTENKLSMKVAVNRCRDQK 208
Query: 178 TELS-----REEIEALLEVPV--LGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIA 230
L I L+V V G+V +D V +A VP +K+P + A+ + + +A
Sbjct: 209 EGLDAFARLSRTIHMFLDVQVQFAGSVSDDVIVSKAVVEQVPFFIKSPQAKASRSVRILA 268
Query: 231 AKL 233
L
Sbjct: 269 DAL 271
>pir||B83463 flagellar synthesis regulator FleN PA1454 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|6692581|gb|AAF24747.1|AF133657_1 (AF133657)
flagellar number regulator [Pseudomonas aeruginosa]
>gi|9947406|gb|AAG04843.1|AE004575_2 (AE004575)
flagellar synthesis regulator FleN [Pseudomonas
aeruginosa]
Length = 280
Score = 101 bits (249), Expect = 9e-21
Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 20/254 (7%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I GKGG GKT N+ +ALA G+ V+L+DAD+ +AN+ ++LG+ TL DV+
Sbjct: 13 IAVTGGKGGVGKTNVSVNLALALADLGRRVMLLDADLGLANVDVLLGLTP-KRTLADVIE 71
Query: 66 GEADLKDAIYEGPAGVKVIP---GGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
G +L+D + GP GV+++P G S+ + + L +IS D +++D AG
Sbjct: 72 GRCELRDVLLLGPGGVRIVPAASGTQSMVHLSPMQHAGLIQAFSDISDNLDVLVVDTAAG 131
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTSEK---- 177
+ + ++ + +E+++V E +ITD+ KL+ G + N S +
Sbjct: 132 IGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRDHGMTRFRVLANMAHSPQEGRN 191
Query: 178 -----TELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAK 232
T+++ ++ L+ +G +P D V++A + P S A++A+K +A K
Sbjct: 192 LFAKLTKVTDRFLDVALQ--YVGVIPYDESVRKAVQKQRAVYEAFPRSKASLAFKAVAQK 249
Query: 233 LAGIKWKPPEPESP 246
+ W P P +P
Sbjct: 250 VD--SW--PLPANP 259
>pir||E82123 MinD-related protein VC2067 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9656613|gb|AAF95213.1| (AE004280)
MinD-related protein [Vibrio cholerae]
Length = 313
Score = 99.8 bits (245), Expect = 3e-20
Identities = 78/252 (30%), Positives = 128/252 (49%), Gaps = 16/252 (6%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I GKGG GK+ + + +A+ GK V+++DAD+ +AN+ ++LG+ L VLA
Sbjct: 43 ISVTGGKGGVGKSNVTLGMAICMAKQGKKVMVLDADLGLANVDVMLGIRP-KRNLGHVLA 101
Query: 66 GEADLKDAIYEGPAGVKVIP---GGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
GE +LKDAI EGP G+++IP G S+ ++ A+ L + D +LID AG
Sbjct: 102 GECELKDAIVEGPHGIRIIPATSGTQSMTELSHAQHVGLIRAFGTLEDEMDILLIDTAAG 161
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTS--EKTE 179
+ ++ +++++V E +ITD+ KL++++ + N V S E E
Sbjct: 162 ISDMVVSFSRAAQDVVVVVCDEPTSITDAYALIKLLSKEHQVQRFKIVANMVRSYREGRE 221
Query: 180 LSRE---EIEALLEV--PVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLA 234
L + E L V ++ +P D V++A +V P SPAA+A +A K
Sbjct: 222 LFAKLTLVTERFLNVSLELVACIPLDDNVRQAVKRQKIVVDAYPRSPAALAISSLANK-- 279
Query: 235 GIKWKPPEPESP 246
+ W P P +P
Sbjct: 280 ALTW--PIPRTP 289
>dbj|BAB06155.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 288
Score = 99.8 bits (245), Expect = 3e-20
Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 15/263 (5%)
Query: 2 EGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLH 61
+G+ I SGKGG GK+ N + L++ + V LID D+ M NL +++G+ +
Sbjct: 22 QGKVIAVVSGKGGVGKSNVSLNFALTLSRQNQKVALIDLDLGMGNLDILMGLSP-SYHII 80
Query: 62 DVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMG---DFILID 118
D++ E + D +GP G+ I GG L ++ + ++ +++ +G D+I++D
Sbjct: 81 DMIKRELTIWDIAEQGPEGITYIAGGSGLSELVELNERQMERFFQQLESLGAIYDYIILD 140
Query: 119 APAGLELTSITALLIGKELIIVTNPEIAAITD--SLKTKLVAEKLGTLPLGAILNRVTS- 175
AG S+ +L E+ +VT PE +ITD ++ + E + + I+NR S
Sbjct: 141 MGAGATAESLRFILSAHEIFVVTTPEPTSITDAYAMVKYICKEPIENPEILLIVNRAESK 200
Query: 176 ---EKTELSREEIEALL---EVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEI 229
E+T + + + + ++ LG +P+D V +A P V+ P + A++A ++
Sbjct: 201 REGEQTAANFKRVVSHFLKKDIHSLGYLPQDSHVVKAVKAQAPFVLHAPQAKASMAMGKL 260
Query: 230 AAKLAG--IKWKPPEPESPVKRI 250
G + P +S +K+I
Sbjct: 261 VHTYLGHRVDRGAPSYQSFMKKI 283
>gb|AAA85593.1| (U43739) YlxH [Borrelia burgdorferi]
Length = 281
Score = 97.9 bits (240), Expect = 1e-19
Identities = 70/242 (28%), Positives = 129/242 (52%), Gaps = 14/242 (5%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIP-VTLHD 62
R I +SGKGG GK+ + + ++ GK V+++DADI MAN++++LG+ IP +++
Sbjct: 18 RFIAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGV--IPKYSIYH 75
Query: 63 VLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQM--GDFILIDAP 120
++A D+++ I + + ++ G ++ + I+E+ ++ D ++ID
Sbjct: 76 MIAQSRDIREVITKTEYNIDLLAGASGTMELLDLSDVDVNKFIKELLKIYEYDIVVIDTS 135
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLP-LGAILNRV--TSE 176
AG+ I+ LL +++IVT PE +ITD+ K+++ K+ L L I+NRV SE
Sbjct: 136 AGISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANVSE 195
Query: 177 KTELSREEIEAL-----LEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAA 231
++++ I+ L + LG + ED ++ + P V+ NP S A+ I A
Sbjct: 196 AKGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVLVNPNSKASYCLDSIVA 255
Query: 232 KL 233
L
Sbjct: 256 TL 257
>pir||E70133 ATP-binding protein (ylxH-1) homolog - Lyme disease spirochete
>gi|2688197|gb|AAC66679.1| (AE001137) ATP-binding
protein (ylxH-1) [Borrelia burgdorferi]
Length = 295
Score = 97.9 bits (240), Expect = 1e-19
Identities = 70/242 (28%), Positives = 129/242 (52%), Gaps = 14/242 (5%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIP-VTLHD 62
R I +SGKGG GK+ + + ++ GK V+++DADI MAN++++LG+ IP +++
Sbjct: 32 RFIAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGV--IPKYSIYH 89
Query: 63 VLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQM--GDFILIDAP 120
++A D+++ I + + ++ G ++ + I+E+ ++ D ++ID
Sbjct: 90 MIAQSRDIREVITKTEYNIDLLAGASGTMELLDLSDVDVNKFIKELLKIYEYDIVVIDTS 149
Query: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLP-LGAILNRV--TSE 176
AG+ I+ LL +++IVT PE +ITD+ K+++ K+ L L I+NRV SE
Sbjct: 150 AGISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANVSE 209
Query: 177 KTELSREEIEAL-----LEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAA 231
++++ I+ L + LG + ED ++ + P V+ NP S A+ I A
Sbjct: 210 AKGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVLVNPNSKASYCLDSIVA 269
Query: 232 KL 233
L
Sbjct: 270 TL 271
>gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mobilis]
Length = 273
Score = 97.1 bits (238), Expect = 2e-19
Identities = 69/239 (28%), Positives = 125/239 (51%), Gaps = 12/239 (5%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I ASGKGG GKT +AN+ AL++ + +L+D D+ MA+ ++LGM T+ D+L
Sbjct: 12 IAVASGKGGVGKTNVIANLTAALSKIKQRTLLLDCDLGMADAGIVLGMNS-DRTIEDILT 70
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKARA---ERLRDLIREISQMGDFILIDAPAG 122
G +D + +G G+ ++PG +I + A RL D +R ++ D+IL+D P+G
Sbjct: 71 GRRQYEDVVQQGVFGLNLVPGVNGAGRIMEMDAVAKRRLVDSLRPWTKSFDYILLDNPSG 130
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRV--TSEKTE 179
+S++ + ++I+V + E + D KL+A + + + N V +E +
Sbjct: 131 ASSSSLSLMASADQVILVLSSEPTSFMDGYALIKLLALEYKVKEILVVTNMVEDETEGRD 190
Query: 180 LSR--EEIEAL---LEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKL 233
L R ++ A +++ LG+VP D ++ A + P S A+ A++ +A +L
Sbjct: 191 LFRRFSDVSARFLGIKLHHLGSVPRDSHIREAVLRKRCCLDLFPRSRASEAFERLAHRL 249
>sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 Spo0A activation inhibitor soj
- Bacillus subtilis >gi|467381|dbj|BAA05227.1| (D26185)
regulation of Spo0J and Orf283 (probable) [Bacillus
subtilis] >gi|580906|emb|CAA44408.1| (X62539) unnamed
protein product [Bacillus subtilis]
>gi|2636644|emb|CAB16134.1| (Z99124) soj [Bacillus
subtilis]
Length = 253
Score = 95.2 bits (233), Expect = 7e-19
Identities = 77/250 (30%), Positives = 125/250 (49%), Gaps = 19/250 (7%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTL 60
G+ I + KGG GKTTT N+G LA GK V+L+D D N + LG+E D+ +
Sbjct: 2 GKIIAITNQKGGVGKTTTSVNLGACLAYIGKRVLLVDID-PQGNATSGLGIEKADVEQCV 60
Query: 61 HDVLAGEADLKDAIYEGPA-GVKVIP-----GGLSLEKIKK-ARAERLRDLIREISQMGD 113
+D+L +AD+ D I + VIP G +E + +R RL+ + + Q D
Sbjct: 61 YDILVDDADVIDIIKATTVENLDVIPATIQLAGAEIELVPTISREVRLKRALEAVKQNYD 120
Query: 114 FILIDAPAGLELTSITALLIGKELIIVTNPE---IAAITDSLKT-KLVAEKLGT-LPLGA 168
+I+ID P L L +I AL ++I E + ++ L T +LV + L T L +
Sbjct: 121 YIIIDCPPSLGLLTINALTASDSVVIPVQCEYYALEGLSQLLNTVRLVQKHLNTDLMIEG 180
Query: 169 ILNRVTSEKTELS---REEIEALLEVPVLGTV-PEDPEVKRASAYGVPLVVKNPTSPAAI 224
+L + +T L EE++ V TV P + + A ++G P+++ +P S A
Sbjct: 181 VLLTMLDARTNLGIQVIEEVKKYFRDKVYKTVIPRNVRLSEAPSHGKPIILYDPRSRGAE 240
Query: 225 AYKEIAAKLA 234
Y ++A ++A
Sbjct: 241 VYLDLAKEVA 250
>sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 probable ATPase -
Synechocystis sp. (strain PCC 6803)
>gi|1001155|dbj|BAA10297.1| (D64001) put. ATPase
[Synechocystis sp.]
Length = 353
Score = 90.9 bits (222), Expect = 1e-17
Identities = 74/251 (29%), Positives = 124/251 (48%), Gaps = 26/251 (10%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I +SGKGG GK+T N+ VALAQ G V L+DADI N +LG+ V + +
Sbjct: 100 IAISSGKGGVGKSTVAVNVAVALAQTGAAVGLLDADIYGPNAPTMLGLSGAAVQVQNSPQ 159
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKA--RAERLRDLIRE-ISQMG----DFILID 118
GE + + ++ G+K++ G ++ + R L +IR+ + Q+ D++++D
Sbjct: 160 GE--VLEPVFN--HGIKMVSMGFLIDPDQPVIWRGPMLNGIIRQFLYQVNWGALDYLIVD 215
Query: 119 APAG---LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTS 175
P G +LT +T + +IVT P+ ++ D+ + + +++G LG + N
Sbjct: 216 MPPGTGDAQLT-LTQSVPMAGAVIVTTPQTVSLLDARRGLKMFQQMGVNVLGIVENMSYF 274
Query: 176 EKTEL-----------SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAI 224
+L E+ L VP+LG VP + ++ GVP+VV P S +A
Sbjct: 275 IPPDLPDRQYDLFGSGGGEKASKELNVPLLGCVPLEIGLREGGDKGVPIVVSQPESASAK 334
Query: 225 AYKEIAAKLAG 235
A IA ++AG
Sbjct: 335 ALTAIAKQIAG 345
>gb|AAF16005.1|AF187159_5 (AF187159) ParA [Streptomyces coelicolor A3(2)]
Length = 357
Score = 90.5 bits (221), Expect = 2e-17
Identities = 77/251 (30%), Positives = 121/251 (47%), Gaps = 22/251 (8%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME---DIPVTL 60
R +V A+ KGG GKTTT N+ +LA G V+++D D N S LG++ D+P ++
Sbjct: 81 RVMVVANQKGGVGKTTTTVNLAASLALHGARVLVVDLD-PQGNASTALGIDHHADVP-SI 138
Query: 61 HDVLAGEADLKDAIYEGP-------AGVKVIPGGLSLEKIK-KARAERLRDLIREISQMG 112
+DVL L + + P A + G +E + AR RL+ I Q
Sbjct: 139 YDVLVESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPL 198
Query: 113 DFILIDAPAGLELTSITALLIGKELIIVTNPEIAAITD----SLKTKLVAEKLG-TLPLG 167
D+ILID P L L ++ AL+ G+E++I E A+ LV L TL +
Sbjct: 199 DYILIDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEGLGQLLRNVDLVRGHLNPTLHVS 258
Query: 168 AILNRVTSEKTELS---REEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSPAA 223
IL + +T L+ +E+ + VL T +P + A +YG ++ +P S A
Sbjct: 259 TILLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGA 318
Query: 224 IAYKEIAAKLA 234
++Y E A ++A
Sbjct: 319 LSYLEAAREIA 329
>gb|AAC03484.1| (AF031590) Soj-like [Streptomyces coelicolor A3(2)]
Length = 255
Score = 89.3 bits (218), Expect = 4e-17
Identities = 76/249 (30%), Positives = 120/249 (47%), Gaps = 22/249 (8%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME---DIPVTLHD 62
+V A+ KGG GKTTT N+ +LA G V+++D D N S LG++ D+P +++D
Sbjct: 1 MVVANQKGGVGKTTTTVNLAASLALHGARVLVVDLD-PQGNASTALGIDHHADVP-SIYD 58
Query: 63 VLAGEADLKDAIYEGP-------AGVKVIPGGLSLEKIK-KARAERLRDLIREISQMGDF 114
VL L + + P A + G +E + AR RL+ I Q D+
Sbjct: 59 VLVESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLDY 118
Query: 115 ILIDAPAGLELTSITALLIGKELIIVTNPEIAAITD----SLKTKLVAEKLG-TLPLGAI 169
ILID P L L ++ AL+ G+E++I E A+ LV L TL + I
Sbjct: 119 ILIDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEGLGQLLRNVDLVRGHLNPTLHVSTI 178
Query: 170 LNRVTSEKTELS---REEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSPAAIA 225
L + +T L+ +E+ + VL T +P + A +YG ++ +P S A++
Sbjct: 179 LLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGALS 238
Query: 226 YKEIAAKLA 234
Y E A ++A
Sbjct: 239 YLEAAREIA 247
>pir||T36573 probable partitioning or sporulation protein - Streptomyces
coelicolor >gi|4808382|emb|CAB42705.1| (AL049826)
putative partitioning or sporulation protein
[Streptomyces coelicolor A3(2)]
Length = 275
Score = 89.3 bits (218), Expect = 4e-17
Identities = 76/249 (30%), Positives = 120/249 (47%), Gaps = 22/249 (8%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME---DIPVTLHD 62
+V A+ KGG GKTTT N+ +LA G V+++D D N S LG++ D+P +++D
Sbjct: 1 MVVANQKGGVGKTTTTVNLAASLALHGARVLVVDLD-PQGNASTALGIDHHADVP-SIYD 58
Query: 63 VLAGEADLKDAIYEGP-------AGVKVIPGGLSLEKIK-KARAERLRDLIREISQMGDF 114
VL L + + P A + G +E + AR RL+ I Q D+
Sbjct: 59 VLVESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLDY 118
Query: 115 ILIDAPAGLELTSITALLIGKELIIVTNPEIAAITD----SLKTKLVAEKLG-TLPLGAI 169
ILID P L L ++ AL+ G+E++I E A+ LV L TL + I
Sbjct: 119 ILIDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEGLGQLLRNVDLVRGHLNPTLHVSTI 178
Query: 170 LNRVTSEKTELS---REEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSPAAIA 225
L + +T L+ +E+ + VL T +P + A +YG ++ +P S A++
Sbjct: 179 LLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGALS 238
Query: 226 YKEIAAKLA 234
Y E A ++A
Sbjct: 239 YLEAAREIA 247
>gi|10954513 SOJ protein [Methanococcus jannaschii]
>gi|2496226|sp|Q60283|YZ24_METJA HYPOTHETICAL PROTEIN
MJECL24 >gi|2129287|pir||G64512 SOJ protein homolog -
Methanococcus jannaschii plasmid pURB800
>gi|1522661|gb|AAC37095.1| (L77118) SOJ protein
[Methanococcus jannaschii]
Length = 259
Score = 88.9 bits (217), Expect = 5e-17
Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 31/252 (12%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSL-ILGM-------EDIP 57
I A+ KGG GKTT N+ LA+ G D ++ID D NLS ILGM ++I
Sbjct: 4 ISIANQKGGVGKTTIALNLSFTLAEKGYDTLVIDLD-PQFNLSFGILGMKLLDYADKNIG 62
Query: 58 VTLHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKK------ARAERLRDLIREISQM 111
+ L + +++++I + + +IP L L ++K AR +L+++I +I +
Sbjct: 63 ILLSKNSVKKKEIEESIIKINDKLDLIPSHLQLSAVEKMLVNAYAREMKLKNIINQIKEN 122
Query: 112 GDFILIDAPAGLELTSITALLIGKELIIVTNPEIAAI---------TDSLKTKLVAEKLG 162
D+I+ID L L I +L+ +II P +I + +K + KL
Sbjct: 123 YDYIIIDNAPSLGLFLINSLVASDYIIIPCEPSYFSIAGVQLMLDTVEEIKESNLNPKLK 182
Query: 163 TLPLGAILNRVTSEKTELSREEIEALLE----VPVLGTVPEDPEVKRASAYGVPLVVKNP 218
LG I N+ S+++++ ++ +E L + +PV+G +P V++A G P+ +
Sbjct: 183 V--LGFIFNKY-SKQSKIPQKRLEQLKQLYPNIPVIGVIPRTITVEKAEREGKPVFKFDA 239
Query: 219 TSPAAIAYKEIA 230
+PA++A+ E+A
Sbjct: 240 NNPASVAFSELA 251
>pir||B71346 probable SpoOJ regulator (soj) - syphilis spirochete
>gi|3322545|gb|AAC65260.1| (AE001208) SpoOJ regulator
(soj) [Treponema pallidum]
Length = 253
Score = 88.9 bits (217), Expect = 5e-17
Identities = 70/247 (28%), Positives = 126/247 (50%), Gaps = 18/247 (7%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHD 62
G+++VF + KGG GKTT+ N+G LA GK +L+D D N+S LG+ +T++D
Sbjct: 2 GKTLVFVNQKGGVGKTTSAINLGAYLALAGKKTLLVDFD-PQGNMSSGLGLAR-GLTVYD 59
Query: 63 VLAGEADLKDAIYEGPA-GVKVIPGGLSLEKI------KKARAERLRDLIREISQMGDFI 115
+LAG+A + + P + IP + L ++ R L+ ++ E+ DFI
Sbjct: 60 LLAGKAHINSVLRTTPVHNLFAIPASIDLSGATVELVDEQDRELYLKKILAEVKDTYDFI 119
Query: 116 LIDAPAGLELTSITALLIGKELIIVTNPE---IAAITDSLKT-KLVAEKLGT-LPLGAIL 170
LID P L + ++ L E+ I E + +T L+T K V L T L +G I
Sbjct: 120 LIDCPPSLGILTLNGLAAANEVFIPLQCEYFALEGLTLLLQTVKRVQSGLNTALSIGGIF 179
Query: 171 NRVTSEKTELSREEIEALLEV---PVLGT-VPEDPEVKRASAYGVPLVVKNPTSPAAIAY 226
+ +T+L++E ++ + V T +P + ++ A ++G+P+ + A +Y
Sbjct: 180 FTMYDTRTKLAQEVVKQVTTYFGDKVFNTIIPRNVKLSEAPSHGLPISSYDAQCAGARSY 239
Query: 227 KEIAAKL 233
+++A ++
Sbjct: 240 EKLAREI 246
>pir||C81422 probable ATP-binding protein Cj0063c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967561|emb|CAB72550.1|
(AL139074) putative ATP-binding protein [Campylobacter
jejuni]
Length = 288
Score = 84.7 bits (206), Expect = 1e-15
Identities = 60/152 (39%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I SGKGG GK+T AN+ LA G V L DADI +ANL +IL + I L VL
Sbjct: 26 IAITSGKGGVGKSTISANLANVLANNGYKVGLFDADIGLANLDVILNVR-IQKNLLHVLR 84
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIK---KARAERLRDLIREISQMGDFILIDAPAG 122
GE L+D + E + +IPG E +K K ER + + ++ DF++ID AG
Sbjct: 85 GECSLEDILIEVKPNLWLIPGESGDEILKYNDKNIYERFLNQASILDEL-DFLIIDTGAG 143
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLKT 154
+ + L + E+I+VT P+ AAITD+ T
Sbjct: 144 IGGNILNFLEMADEVIVVTVPDPAAITDAYAT 175
>gb|AAG10431.1| (AF251019) minD [Tagetes erecta]
Length = 295
Score = 82.7 bits (201), Expect = 4e-15
Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 20/239 (8%)
Query: 35 VILIDADITMANLSLILGMED-IPVTLHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKI 93
V+ IDAD+ + NL L+LG+E+ + T+ +VL G+ L A+ +S +
Sbjct: 61 VVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRS 120
Query: 94 KK-----ARAERLRDLIREISQ-MGDFILIDAPAGLELTSITALLIGKELIIVTNPEIAA 147
K +A D +++ + DFILID PAG++ ITA+ E ++VT P+I A
Sbjct: 121 KLPLGFGGKALVWLDALKDRQEGCPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITA 180
Query: 148 ITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSR-EEIEALLEV-PVLG-TVPEDP--- 201
+ D+ + + E G + I+NRV +T+L R E++ ++L+V +LG ++ D
Sbjct: 181 LRDADRVTGLLECDGIRDIKMIVNRV---RTDLIRGEDMMSVLDVQEMLGLSLLSDTRGF 237
Query: 202 EVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLA---GIKWKPPEPESPVKRIFRALFGG 257
EV R++ G PLV+ P + A +A+++ A +L +K E E P KR F + FGG
Sbjct: 238 EVIRSTNRGFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVE-EEPKKRGFFSFFGG 295
>pir||B64649 ATP-binding protein - Helicobacter pylori (strain 26695)
>gi|2314178|gb|AAD08077.1| (AE000611) ATP-binding
protein (ylxH) [Helicobacter pylori 26695]
Length = 294
Score = 82.3 bits (200), Expect = 5e-15
Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 11/210 (5%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I SGKGG GK+ AN+ +L + G V + DADI +ANL +I G++ LH L
Sbjct: 30 IAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHKNILH-ALK 88
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKK-ARAERLRDLIREISQMG--DFILIDAPAG 122
GEA L++ I E G+ +IPG E +K + AE L + E + D+I++D AG
Sbjct: 89 GEAKLQEIICEIEPGLCLIPGDSGEEILKYISGAEALDQFVDEEGVLSSLDYIVVDTGAG 148
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAIL------NRVTS 175
+ T+ L ++IVT P+ +AITD+ K+ ++ L L A + R T
Sbjct: 149 IGATTQAFLNASDCVVIVTTPDPSAITDAYACIKINSKNKDELFLIANMVAQPKEGRATY 208
Query: 176 EKTELSREEIEALLEVPVLGTVPEDPEVKR 205
E+ + A LE+ LG + +KR
Sbjct: 209 ERLFKVAKNNIASLELHYLGAIENSSLLKR 238
>sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-UNCI INTERGENIC REGION
>gi|94916|pir||S18097 regulatory protein spo0J homolog -
Pseudomonas putida >gi|45713|emb|CAA44421.1| (X62540)
unnamed protein product [Pseudomonas putida]
Length = 263
Score = 81.9 bits (199), Expect = 7e-15
Identities = 67/251 (26%), Positives = 123/251 (48%), Gaps = 21/251 (8%)
Query: 9 ASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTLHDVLAG 66
A+ KGG GKTTT N+ +LA + V+LID D N ++ G++ ++ +++D+L G
Sbjct: 8 ANQKGGVGKTTTCINLAASLAATKRRVLLIDLD-PQGNATMGSGVDKHELEHSVYDLLIG 66
Query: 67 EADLKDAI-YEGPAGVKVIPGGLSLEKIK------KARAERLRDLIREISQMGDFILIDA 119
E DL A+ Y G +++P L + + + RLR+ + I D+ILID
Sbjct: 67 ECDLAQAMHYSEHGGFQLLPANRDLTAAEVVLLEMQVKESRLRNALAPIRDNYDYILIDC 126
Query: 120 PAGLELTSITALLIGKELIIVTNPE------IAAITDSLKTKLVAEKLGTLPLGAILNRV 173
P L + ++ AL+ +II E ++ + D++K ++ A L + +L +
Sbjct: 127 PPSLSMLTLNALVASDGVIIPMQCEYYALEGLSDLVDNIK-RIAARLNPELKIEGLLRTM 185
Query: 174 TSEKTELSREEIEALLE--VPVL--GTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEI 229
+ L+ + L E P L +P + + A ++G+P + + S A+AY +
Sbjct: 186 YDPRLSLNNDVSAQLKEHFGPQLYDTVIPRNIRLAEAPSFGMPALAYDKQSRGALAYLAL 245
Query: 230 AAKLAGIKWKP 240
A +L + +P
Sbjct: 246 AGELVRRQRRP 256
>gb|AAB53135.1| (L39923) ORF278; hypothetical 30.3 Kd protein; similar to
hypothetical protein 27.5 kd in SPO0J-GIDB intergenic
region of B. subtilis and to 27.5 kd protein in
GIDB-UNCI intergenic region of P. putida; putative
[Mycobacterium leprae]
Length = 278
Score = 81.9 bits (199), Expect = 7e-15
Identities = 73/252 (28%), Positives = 118/252 (45%), Gaps = 22/252 (8%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGM---EDIPVTL 60
R A+ KGG GKTTT N+ ALA G ++ID D N S LG+ + +
Sbjct: 18 RLFTIANQKGGVGKTTTAVNLAAALALQGLKALVIDLD-PQGNASTALGISNRQSRVFSS 76
Query: 61 HDVLAGEADLKDAIYEGPAGVKV--IPGGLSLEKIK------KARAERLRDLIREISQMG 112
+DVL GE L+ A+ P ++ +P + L + AR RLR + E++ +
Sbjct: 77 YDVLIGEVSLQTALRCSPYNERLFCLPAAIDLAGAEIELVSMVARENRLRTALTELNDLD 136
Query: 113 -DFILIDAPAGLELTSITALLIGKELIIVTNPEIAAITD----SLKTKLVAEKLG-TLPL 166
D++ ID P L L +I AL+ E+II E A+ ++V L L +
Sbjct: 137 FDYVFIDCPPSLGLLTINALVAAPEVIIPIQCEYYALEGVSQLMCNIEMVKAHLNPQLEV 196
Query: 167 GAILNRVTSEKTELS---REEIEALLEVPVLGTV-PEDPEVKRASAYGVPLVVKNPTSPA 222
++ + +T+L+ EE+ VL TV P +V A Y + ++ +P S
Sbjct: 197 TTVILTMYDGRTKLADQVAEEVRRYFGTKVLQTVIPRSVKVSEAPGYSMTIIDYDPGSRG 256
Query: 223 AIAYKEIAAKLA 234
A++Y + + +LA
Sbjct: 257 AMSYLDASRELA 268
>pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (strain J99)
>gi|4154712|gb|AAD05776.1| (AE001457) putative
[Helicobacter pylori J99]
Length = 368
Score = 81.9 bits (199), Expect = 7e-15
Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 35/253 (13%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
++ +SGKGG GK+TT N+ +ALA + V L+DAD+ N+ ++G+++ V +
Sbjct: 100 VMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADVIM----- 154
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQM--------GDFILI 117
+ K I GV V+ GL ++ ++ R L+R I QM D +++
Sbjct: 155 -DPSGKKLIPLKAFGVSVMSMGLLYDE-GQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVV 212
Query: 118 DAPAG-----LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNR 172
D P G L L L G I VT P+I ++ D+ ++ + +KL +P+ I+
Sbjct: 213 DMPPGTGDAQLTLAQAVPLSAG---ITVTTPQIVSLDDAKRSLDMFKKL-HIPIAGIVEN 268
Query: 173 VTSEKTELSREEIE--------ALLE---VPVLGTVPEDPEVKRASAYGVPLVVKNPTSP 221
+ S E ++E E LLE +L +P +P+V+ G P+V+ +PTS
Sbjct: 269 MGSFVCEHCKKESEIFGSNSMSGLLEAYNTQILAKLPLEPKVRLGGDKGEPIVISHPTSV 328
Query: 222 AAIAYKEIAAKLA 234
+A ++++A L+
Sbjct: 329 SAKIFEKMAKDLS 341
>pir||D71938 hypothetical protein jhp0390 - Helicobacter pylori (strain J99)
>gi|4154927|gb|AAD05975.1| (AE001473) putative
[Helicobacter pylori J99]
Length = 294
Score = 81.9 bits (199), Expect = 7e-15
Identities = 71/210 (33%), Positives = 106/210 (49%), Gaps = 11/210 (5%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I SGKGG GK+ AN+ +L + G V + DADI +ANL +I G++ LH L
Sbjct: 30 IAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHKNILH-ALK 88
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKK-ARAERLRDLIREISQMG--DFILIDAPAG 122
GEA L++ I E G+ +IPG E +K + AE L + E + D+I+ID AG
Sbjct: 89 GEAKLQEIICEIEPGLCLIPGDSGEEILKYISGAEALDRFVDEEGVLSSLDYIVIDTGAG 148
Query: 123 LELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAIL------NRVTS 175
+ T+ L ++IVT P+ +AITD+ K+ ++ L L A + R T
Sbjct: 149 IGATTQAFLNASDCVVIVTTPDPSAITDAYACIKINSKNKDELFLIANMVAQPKEGRATY 208
Query: 176 EKTELSREEIEALLEVPVLGTVPEDPEVKR 205
E+ + A LE+ LG + +KR
Sbjct: 209 ERLFKVAKNNIASLELHYLGAIENSSLLKR 238
>dbj|BAB07777.1| (AP001520) centromere-like function involved in forespore
chromosome partition [Bacillus halodurans]
Length = 253
Score = 81.9 bits (199), Expect = 7e-15
Identities = 70/246 (28%), Positives = 119/246 (47%), Gaps = 19/246 (7%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTLHDV 63
I A+ KGG GKTTT N+ LA G+ V+L+D D N + +G+E DI ++DV
Sbjct: 5 ISIANQKGGVGKTTTAVNLSACLAHLGQRVLLVDID-PQGNATSGVGIEKGDIDECIYDV 63
Query: 64 LAGEADLKDAI-YEGPAGVKVIP-----GGLSLEKIKK-ARAERLRDLIREISQMGDFIL 116
L + D +D I + V+P G +E + +R RL+ + ++ + DFI
Sbjct: 64 LVEDVDTQDVIRTTNMENLDVLPSTIQLSGAEIELVSTISREVRLKRALDQVGRKYDFIF 123
Query: 117 IDAPAGLELTSITALLIGKELIIVTNPE---IAAITDSLKT-KLVAEKLGT-LPLGAILN 171
ID P L L +I AL ++I E + ++ L T +LV + L T L + +L
Sbjct: 124 IDCPPSLGLLTINALTASDSVLIPVQCEYYALEGLSQLLNTVRLVQKHLNTDLAIEGVLL 183
Query: 172 RVTSEKTELS---REEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSPAAIAYK 227
+ +T L +E++ V T +P + + A ++G P++ + S A Y
Sbjct: 184 TMLDARTNLGIQVIDEVKKYFREKVFDTIIPRNVRLGEAPSHGEPIIRYDAKSRGAEVYL 243
Query: 228 EIAAKL 233
++A ++
Sbjct: 244 DLAKEV 249
>sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 conserved hypothetical
protein aq_737 - Aquifex aeolicus
>gi|2983325|gb|AAC06915.1| (AE000705) hypothetical
protein [Aquifex aeolicus]
Length = 364
Score = 80.0 bits (194), Expect = 3e-14
Identities = 72/252 (28%), Positives = 114/252 (44%), Gaps = 29/252 (11%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I SGKGG GK+T AN+ VAL+Q G V L+DAD+ ++ + G++ VT+
Sbjct: 115 IAVGSGKGGVGKSTVAANLAVALSQLGYKVGLLDADVYGPSVPTLFGLKGERVTVD---- 170
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQM--------GDFILI 117
+ I G+K++ G L R L++ +++ DF+++
Sbjct: 171 ---QFQRIIPVEKYGLKILSIGFMLPSEDTPIIWRGPMLMKALTEFLFSTKWGNLDFLVM 227
Query: 118 DAPAGLELTSITALLIGKEL---IIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRV- 173
D P G IT L EL ++VT P+ A+ D K + ++ LG I N
Sbjct: 228 DLPPGTGDVQIT-LAQNVELTGAVVVTTPQDVALADVKKAVSMFREVNIPVLGVIENMAY 286
Query: 174 ---TSEKTEL------SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAI 224
S+K + E + +LG++P DPEV S G P+V+ +P S A
Sbjct: 287 FICPSDKQKYYIFGKGKVAEFANAYGLKILGSIPIDPEVAEKSDKGEPIVISHPDSEVAK 346
Query: 225 AYKEIAAKLAGI 236
A+ IA L+ +
Sbjct: 347 AFLSIAKVLSQV 358
>pir||A71125 probable SOJ protein - Pyrococcus horikoshii
>gi|3257176|dbj|BAA29859.1| (AP000003) 256aa long
hypothetical SOJ protein [Pyrococcus horikoshii]
Length = 256
Score = 80.0 bits (194), Expect = 3e-14
Identities = 65/253 (25%), Positives = 123/253 (47%), Gaps = 20/253 (7%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHD 62
G I A+ KGG GKTT N+G +L++FGK V+L+D D ++GM+ I +
Sbjct: 2 GVVISIANQKGGVGKTTIALNLGYSLSKFGKKVLLVDIDPQFNLTFALIGMDVINYENKN 61
Query: 63 V---LAGEADLKDAIYEGPAGVKVIPGGLSLEKIK------KARAERLRDLIREISQMGD 113
V + E+ ++D + E + +IP L+L + R RL ++ + D
Sbjct: 62 VGTLMTKESTVEDVLIEINENIHLIPSHLTLSAKEIEILNTYNRERRLEKALKPVYPEYD 121
Query: 114 FILIDAPAGL------ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLG 167
+I+ID P + LT+ +LI EL + + + +K G LG
Sbjct: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMKMIKDETNEGLRLLG 181
Query: 168 AILNRVTSEKTELSREEIEALLEV----PVLGTVPEDPEVKRASAYGVPLVVKNPTSPAA 223
+ N+ T +T++ + ++ L E+ P+L T+P+ +++A A G ++ +P A+
Sbjct: 182 IVPNKFT-RQTKIPEKRLKELKELYPEAPILTTIPKTVTIEKAQAEGKSILEYDPNGKAS 240
Query: 224 IAYKEIAAKLAGI 236
A++++A ++ +
Sbjct: 241 RAFEKLAREVISL 253
>sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ATP-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313292|gb|AAD07271.1| (AE000540) ATP-binding
protein (mpr) [Helicobacter pylori 26695]
Length = 412
Score = 79.2 bits (192), Expect = 4e-14
Identities = 71/253 (28%), Positives = 124/253 (48%), Gaps = 35/253 (13%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
++ +SGKGG GK+TT N+ +ALA + V L+DAD+ N+ ++G++ V +
Sbjct: 144 VMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQSADVIM----- 198
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQM--------GDFILI 117
+ K I GV V+ GL ++ ++ R L+R I QM D +++
Sbjct: 199 -DPSGKKLIPLKAFGVSVMSMGLLYDE-GQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVV 256
Query: 118 DAPAG-----LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNR 172
D P G L L L G I VT P+I ++ D+ ++ + +KL +P+ I+
Sbjct: 257 DMPPGTGDAQLTLAQAVPLSAG---ITVTTPQIVSLDDAKRSLDMFKKL-HIPIAGIVEN 312
Query: 173 VTSEKTELSREEIE--------ALLE---VPVLGTVPEDPEVKRASAYGVPLVVKNPTSP 221
+ S E ++E E LLE +L +P +P+V+ G P+V+ +P S
Sbjct: 313 MGSFVCEHCKKESEIFGSNSMSELLEAYHTQILAKLPLEPKVRLGGDRGEPIVISHPNSV 372
Query: 222 AAIAYKEIAAKLA 234
+A ++++A L+
Sbjct: 373 SAKIFEKMAQDLS 385
>pir||B82950 chromosome partitioning protein Soj PA5563 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951904|gb|AAG08948.1|AE004968_2 (AE004968)
chromosome partitioning protein Soj [Pseudomonas
aeruginosa]
Length = 262
Score = 79.2 bits (192), Expect = 4e-14
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 19/243 (7%)
Query: 9 ASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTLHDVLAG 66
A+ KGG GKTTT N+ +L + V+L+D D N + G++ ++ +++DVL G
Sbjct: 8 ANQKGGVGKTTTCINLAASLVATKRRVLLLDLD-PQGNATTGSGIDKHNLEHSIYDVLTG 66
Query: 67 EADLKDAI-YEGPAGVKVIPGGLSLEKIKKARAE------RLRDLIREISQMGDFILIDA 119
E +L +A+ + G +++P L + E RLR+ + I + D+ILID
Sbjct: 67 ECNLAEAMQFSEHGGYQLLPANRDLTAAEVVLLEMDMKENRLRNALAPIRENYDYILIDC 126
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLG-----TLPLGAILNRVT 174
P L + ++ AL +II E A+ +++G TL + +L +
Sbjct: 127 PPSLSMLTVNALTAADGVIIPMQCEYYALEGLTDLMNSIQRIGQLLNPTLKIEGLLRTMY 186
Query: 175 SEKTELSREEIEALLE----VPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIA 230
+ L+ + L E +P + + A ++G+P +V + S AIAY +A
Sbjct: 187 DPRISLTNDVSAQLQEHFGDTLYSTVIPRNVRLAEAPSFGMPALVYDKQSRGAIAYLALA 246
Query: 231 AKL 233
+L
Sbjct: 247 GEL 249
>sp|O05189|PARA_CAUCR CHROMOSOME PARTITIONING PROTEIN PARA >gi|1916914|gb|AAB51267.1|
(U87804) ParA [Caulobacter crescentus]
Length = 266
Score = 78.8 bits (191), Expect = 6e-14
Identities = 73/250 (29%), Positives = 120/250 (47%), Gaps = 22/250 (8%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLS--LILGMEDIPVTLH 61
R + A+ KGG GKTTT N+G A A G+ V+LIDAD N S L +G TL+
Sbjct: 7 RVLAIANQKGGVGKTTTAINLGTAWA-LGERVLLIDAD-PQGNCSTGLGIGRTQRRTTLY 64
Query: 62 DVLAGEADLKDAIYEGP-AGVKVIPGGLSLEKIK------KARAERLRDLIREISQMG-- 112
DVL GEA + DA + G+ VIP L ++ R+ RLRD + I G
Sbjct: 65 DVLMGEAPVVDAAVKTELPGLDVIPADADLSGVEIELGQTARRSYRLRDALEAIRANGPY 124
Query: 113 DFILIDAPAGLELTSITALLIGKELIIVTNPEIAA---ITDSLKT-KLVAEKLG-TLPLG 167
++LID P L + ++ A+ + + E A +T ++T + VA L L +
Sbjct: 125 TYVLIDCPPSLNVLTVNAMTAADAVFVPLQCEFFALEGLTQLMRTIERVARSLNPRLEIQ 184
Query: 168 AILNRVTSEKTELSRE---EIEALLEVPVL-GTVPEDPEVKRASAYGVPLVVKNPTSPAA 223
++ + + LS + ++ A V +P + V A ++G P+++ + +
Sbjct: 185 GVVLTIYDRRNSLSEQVAKDVRAHFGDKVYDAVIPRNVRVSEAPSFGKPVLLYDLKCAGS 244
Query: 224 IAYKEIAAKL 233
AY ++A ++
Sbjct: 245 QAYLKLAREV 254
>pir||C81999 parA family protein NMA0076 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7378849|emb|CAB83392.1|
(AL162752) parA family protein [Neisseria meningitidis
Z2491]
Length = 257
Score = 78.8 bits (191), Expect = 6e-14
Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 19/251 (7%)
Query: 1 MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPV 58
M + A+ KGG GKTTT N+ +LA GK V+++D D N + G++ +
Sbjct: 1 MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLD-PQGNATTGSGIDKASLQS 59
Query: 59 TLHDVLAGEADLKDAIYE------GPAGVKVIPGGLSLEKIKK-ARAERLRDLIREISQM 111
++ VL G+AD+K A G G G +E +++ AR RL++ ++ +++
Sbjct: 60 GVYQVLLGDADVKSAAVRSKEGGYGVLGANRALAGAEIELVQEIAREVRLKNALKAVAED 119
Query: 112 GDFILIDAPAGLELTSITALLIGKELIIVTNPE---IAAITDSLKT--KLVAEKLGTLPL 166
DFILID P L L ++ L+ +I+ E + I+D + T K+ L +
Sbjct: 120 YDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDI 179
Query: 167 GAILNRVTSEKTELSREEIEALL----EVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPA 222
I+ + ++ L E E L ++ +P + + A ++G+P++ + +
Sbjct: 180 TGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKG 239
Query: 223 AIAYKEIAAKL 233
A AY +A +L
Sbjct: 240 AKAYLALADEL 250
>gb|AAC08060.1| (AF031898) unknown [Pseudomonas putida]
Length = 238
Score = 78.0 bits (189), Expect = 1e-13
Identities = 60/224 (26%), Positives = 112/224 (49%), Gaps = 20/224 (8%)
Query: 36 ILIDADITMANLSLILGMEDIPVTLHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKK 95
+L+DAD+ +AN+ ++LG+ TL DV+ G +L+D + +GP GV+++P + +
Sbjct: 1 MLLDADLGLANVDVLLGLTP-KRTLADVIEGRCELRDVMLQGPGGVRIVPAASGTQSMVH 59
Query: 96 ARAERLRDLIREISQMG---DFILIDAPAGLELTSITALLIGKELIIVTNPEIAAITDSL 152
+ LI+ S++G D ++ID AG+ + ++ + +E+++V E +ITD+
Sbjct: 60 LAPAQHAGLIKAFSEIGDNLDVLVIDTAAGIGESVVSFVRAAQEVLLVVCDEPTSITDAY 119
Query: 153 K-TKLVAEKLGTLPLGAILNRVTSEK---------TELSREEIEALLEVPVLGTVPEDPE 202
KL+ G + N S + T+++ ++ L+ +G VP D
Sbjct: 120 ALIKLLNRDYGMNRFRVLANMAQSPQEGRNLFAKLTKVTDRFLDVALQ--YVGAVPYDEC 177
Query: 203 VKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGIKWKPPEPESP 246
V++A + P S A+A+K IA K+ W P P +P
Sbjct: 178 VRKAVQKQRAVYEAFPRSKCALAFKAIAQKVD--SW--PLPANP 217
>pir||H70404 cell division inhibitor (septum placement) minD1 - Aquifex aeolicus
>gi|2983660|gb|AAC07226.1| (AE000729) septum
site-determining protein MinD [Aquifex aeolicus]
Length = 278
Score = 78.0 bits (189), Expect = 1e-13
Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R I +SGKGG GKT NIG L++ GK V++ D D+ ++N+ L+ G+ L D+
Sbjct: 23 RYISVSSGKGGVGKTLVSINIGEILSERGKRVLIFDGDLGLSNVHLMYGIAPTK-DLSDL 81
Query: 64 LAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMG----DFILIDA 119
+ G A +++ + + I GG +++ ERL +++++ + D+++ID
Sbjct: 82 IKGFATIEELPVKVNEHLYFISGGSGFQELADLPKERLTTIVQKLYEYAEDNFDYVVIDT 141
Query: 120 PAGLELTSITALLIGKELIIVTNPEIAAITDSLK-TKLVAEKLGTLPLGAILNRVTS 175
P G+ T++ II+T PE A+ D+ K++ + G I+N+ S
Sbjct: 142 PPGIHRTTVMLTSCADIPIILTTPEPTALMDAYALIKVINREEGVENFYVIINKADS 198
>pir||D81227 ParA family protein NMB0191 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7225411|gb|AAF40648.1|
(AE002376) ParA family protein [Neisseria meningitidis
MC58]
Length = 257
Score = 77.6 bits (188), Expect = 1e-13
Identities = 65/252 (25%), Positives = 120/252 (46%), Gaps = 19/252 (7%)
Query: 1 MEGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPV 58
M + A+ KGG GKTTT N+ +LA GK V+++D D N + G++ +
Sbjct: 1 MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLD-PQGNATTGSGIDKAGLQS 59
Query: 59 TLHDVLAGEADLKDAIYEGPAGVKVIPG------GLSLEKIKK-ARAERLRDLIREISQM 111
++ VL G+AD++ A G + G G +E +++ AR RL++ ++ + +
Sbjct: 60 GVYQVLLGDADVQSAAVRSKEGGYAVLGANRALAGAEIELVQEIAREVRLKNALKAVEED 119
Query: 112 GDFILIDAPAGLELTSITALLIGKELIIVTNPE---IAAITDSLKT--KLVAEKLGTLPL 166
DFILID P L L ++ L+ +I+ E + I+D + T K+ L +
Sbjct: 120 YDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDI 179
Query: 167 GAILNRVTSEKTELSREEIEALL----EVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPA 222
I+ + ++ L E E L ++ +P + + A ++G+P++ + +
Sbjct: 180 TGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKG 239
Query: 223 AIAYKEIAAKLA 234
AY +A +LA
Sbjct: 240 TKAYLALADELA 251
>gb|AAF67043.1|AF183382_3 (AF183382) MinD homolog [Pseudomonas putida]
Length = 238
Score = 77.6 bits (188), Expect = 1e-13
Identities = 60/224 (26%), Positives = 112/224 (49%), Gaps = 20/224 (8%)
Query: 36 ILIDADITMANLSLILGMEDIPVTLHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKK 95
+L+DAD+ +AN+ ++LG+ TL DV+ G +L+D + +GP GV+++P + +
Sbjct: 1 MLLDADLGLANVDVLLGLTP-KRTLADVIEGRCELRDVMLQGPGGVRIVPAASGTQSMVH 59
Query: 96 ARAERLRDLIREISQMG---DFILIDAPAGLELTSITALLIGKELIIVTNPEIAAITDSL 152
+ LI+ S++G D ++ID AG+ + ++ + +E+++V E +ITD+
Sbjct: 60 LAPAQHAGLIQAFSEIGDNLDVLVIDTAAGIGESVVSFVRAAQEVLLVVCDEPTSITDAY 119
Query: 153 K-TKLVAEKLGTLPLGAILNRVTSEK---------TELSREEIEALLEVPVLGTVPEDPE 202
KL+ G + N S + T+++ ++ L+ +G VP D
Sbjct: 120 ALIKLLNRDYGMNRFRVLANMAQSPQEGRNLFAKLTKVTDRFLDVALQ--YVGAVPYDEC 177
Query: 203 VKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAGIKWKPPEPESP 246
V++A + P S A+A+K IA K+ W P P +P
Sbjct: 178 VRKAVQKQRAVYEAFPRSKCALAFKAIAQKVD--SW--PLPANP 217
>pir||F70595 hypothetical protein Rv3213c - Mycobacterium tuberculosis (strain
H37RV) >gi|2072672|emb|CAB08303.1| (Z95120) hypothetical
protein Rv3213c [Mycobacterium tuberculosis]
Length = 266
Score = 77.3 bits (187), Expect = 2e-13
Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 20/257 (7%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGM--EDIPVTLH 61
R + A+ KGG KTTTVA++G A+ + G+ V+L+D D L+ LG + +PV++H
Sbjct: 5 RVLAVANQKGGVAKTTTVASLGAAMVEKGRRVLLVDLD-PQGCLTFSLGQDPDKLPVSVH 63
Query: 62 DVLAGEADLKDAIYEGPAGVKVIPGGLSL---EKIKKARAER---LRDLIREISQMGDFI 115
+VL GE + + G+ ++P + L E + RA R L+ + + S D +
Sbjct: 64 EVLLGEVEPNAVLVTTMEGMTLLPANIDLAGAEAMLLMRAGREYALKRALAKFSDRFDVV 123
Query: 116 LIDAPAGLELTSITALLIGKELIIVTNPEIAA---ITDSLKTKLVAEKL--GTLPLGAIL 170
+ID P L + ++ L + I+ E+ A + L+T +++ L L L
Sbjct: 124 IIDCPPSLGVLTLNGLTAADKAIVPLQCEMLAHRGVGQFLRTVADVQQITNPNLRLLGAL 183
Query: 171 NRVTSEKTELSRE---EIEALLEVPVLG-TVPEDPEVKRASAYGVPLVVKNPTSPAAIAY 226
+ +T +R+ ++ ++ VL +P ASA G V+ + A+AY
Sbjct: 184 PTLYDSRTTHTRDVLLDVADRYDLQVLAPPIPRTVRFAEASASG-SSVMAGRKNKGAVAY 242
Query: 227 KEIAAKLAGIKWKPPEP 243
+E+A L WK P
Sbjct: 243 RELAQALLK-HWKTGRP 258
>pir||B71714 soj protein (soj) RP058 - Rickettsia prowazekii
>gi|3860628|emb|CAA14529.1| (AJ235270) SOJ PROTEIN (soj)
[Rickettsia prowazekii]
Length = 255
Score = 77.3 bits (187), Expect = 2e-13
Identities = 66/247 (26%), Positives = 119/247 (47%), Gaps = 21/247 (8%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGM--EDIPVTLHDV 63
I + KGG KTTT N+ A A K +++ID D N S G+ + T++ V
Sbjct: 4 ISIVNQKGGVAKTTTTVNLATAFASVNKKILVIDLD-PQGNSSTGFGIIQQQRKNTIYQV 62
Query: 64 LAGEADLKDAIY-EGPAGVKVIPGGLSLEKIK------KARAERLRDLIREISQMGDFIL 116
L +LKDAI +++I +L + K R L L+ E+ + D+I+
Sbjct: 63 LTNLIELKDAIIATNIPNLEIITSNTNLSAAELDLTTLKEREYVLMKLLEEVKILYDYII 122
Query: 117 IDAPAGLELTSITALLIGKELIIVTNPE---IAAITDSLKT-KLVAEKLG-TLPLGAILN 171
ID P L L ++ AL+ E++I + + ++ LKT ++V +KL + + IL
Sbjct: 123 IDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHLLKTIEIVEKKLNPKIKIAGILF 182
Query: 172 RVTSEKTELSREEIE-----ALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAY 226
+ ++ L+ E++E L E+ +P + ++ A +YG P ++ + A+AY
Sbjct: 183 TMYDKRNRLT-EQVEDDVRKCLGELVFKTVIPRNIKLSEAPSYGKPAILYDYKCAGAVAY 241
Query: 227 KEIAAKL 233
E+ ++
Sbjct: 242 IELTKEI 248
>pir||A72319 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981442|gb|AAD35987.1|AE001755_10 (AE001755)
conserved hypothetical protein [Thermotoga maritima]
Length = 275
Score = 77.3 bits (187), Expect = 2e-13
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 13/244 (5%)
Query: 2 EGRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLH 61
E I SGKGG GK+ N+ +AL + G V+L+DAD+ ++ ++LG P TL
Sbjct: 12 EPNIISVLSGKGGVGKSVIAVNLSLALKEKGLRVLLLDADVGFGSVEILLGFM-APKTLK 70
Query: 62 DVLAGEADLKDAIYEGPAGVKVIPGGLSLEKI---KKARAERLRDLIREISQMGDFILID 118
D ++D ++E GV V+ G+ +E + R D + + D+++ID
Sbjct: 71 DFFKSNVRIEDIVFETKYGVDVLSSGIDMEDLILFNLGDRRRFFDEFARLLRKYDYLVID 130
Query: 119 APAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLP--LGAILNRVTSE 176
P G + LI+VT+PE +I ++ + G P + ++N V +
Sbjct: 131 FPPGYNENLDQFYIQSDFLILVTSPEPTSIINTYTLIKLLSVKGITPEEIFLVMNMVRNM 190
Query: 177 KT-ELSREEIEALLE------VPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEI 229
K L+ + ++ ++E + + ED V+R+ P V + S ++A +
Sbjct: 191 KEGRLAADRLKRVVERFVGFTIKNYFVIKEDQVVQRSVFLQEPFVRSHSRSQPSLAIYGL 250
Query: 230 AAKL 233
K+
Sbjct: 251 REKI 254
>sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir||D64335
nucleotide-binding protein - Methanococcus jannaschii
>gi|1591007|gb|AAB98271.1| (U67483) nucleotide-binding
protein [Methanococcus jannaschii]
Length = 290
Score = 76.5 bits (185), Expect = 3e-13
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 30/249 (12%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
IV SGKGG GK+T N+ AL GK V ++DADI N+ +LG+E+ +A
Sbjct: 42 IVILSGKGGVGKSTVTVNLAAALNLMGKKVGVLDADIHGPNIPKMLGVENT-----QPMA 96
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKA---RAERLRDLIRE-ISQMG----DFILI 117
G A + + + G+K + G L K R ++ IR+ +S + D++LI
Sbjct: 97 GPAGIFPIVTKD--GIKTMSIGYLLPDDKTPVIWRGPKVSGAIRQFLSDVVWGELDYLLI 154
Query: 118 DAPAGL---ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAI----- 169
D P G +LT + ++ IIVT PE ++ D K+ ++A+ L +G I
Sbjct: 155 DTPPGTGDEQLTIMQSIPDIDGAIIVTTPEEVSVLDVKKSIMMAKMLNIPIIGIIENMSG 214
Query: 170 -----LNRVTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAI 224
N+V E+ L V LG +P D + + AS G+P+V+ + A+
Sbjct: 215 FVCPYCNKVVDIFGRGGGEKAAKELGVEFLGRIPLDIKAREASDKGIPMVLLD--CKASE 272
Query: 225 AYKEIAAKL 233
+K+I ++
Sbjct: 273 EFKKIVKRI 281
>gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo sapiens]
>gi|11432473|ref|XP_008093.1| nucleotide binding protein
2 (E.coli MinD like) [Homo sapiens]
>gi|5565870|gb|AAD45242.1|AF118394_1 (AF118394) putative
nucleotide binding protein [Homo sapiens]
Length = 271
Score = 76.5 bits (185), Expect = 3e-13
Identities = 70/251 (27%), Positives = 114/251 (44%), Gaps = 28/251 (11%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I+ SGKGG GK+T + +AL GK V ++D D+ ++ +LG + V H
Sbjct: 17 ILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAV--HQCDR 74
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKA---RAERLRDLIRE-ISQMG----DFILI 117
G A + + + ++ G LEK +A R + LI++ +S + D++++
Sbjct: 75 GWAPV---FLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVV 131
Query: 118 DAPAGL---ELTSITALLIGKEL--IIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILN- 171
D P G + +I AL + L ++VT P+ ++ D + K G +G + N
Sbjct: 132 DTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENM 191
Query: 172 ---------RVTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPA 222
TS + EE+ L VP LG+VP DP + R G + + P SPA
Sbjct: 192 SGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGSPA 251
Query: 223 AIAYKEIAAKL 233
A IA K+
Sbjct: 252 FAALTSIAQKI 262
>pir||F70851 probable parB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2808703|emb|CAA16231.1| (AL021426) parB
[Mycobacterium tuberculosis]
Length = 347
Score = 76.1 bits (184), Expect = 4e-13
Identities = 71/252 (28%), Positives = 116/252 (45%), Gaps = 22/252 (8%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDI---PVTL 60
R + A+ KGG GKTTT NI ALA G ++ID D N S LG+ D +
Sbjct: 85 RVLTIANQKGGVGKTTTAVNIAAALAVQGLKTLVIDLD-PQGNASTALGITDRQSGTPSS 143
Query: 61 HDVLAGEADLKDAIYEGPAGVKV--IP-----GGLSLEKIKK-ARAERLRDLIREISQMG 112
+++L GE L A+ P ++ IP G +E + AR RLR + +
Sbjct: 144 YEMLIGEVSLHTALRRSPHSERLFCIPATIDLAGAEIELVSMVARENRLRTALAALDNFD 203
Query: 113 -DFILIDAPAGLELTSITALLIGKELIIVTNPEIAAITD----SLKTKLVAEKLG-TLPL 166
D++ +D P L L +I AL+ E++I E A+ ++V L L +
Sbjct: 204 FDYVFVDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLNPQLEV 263
Query: 167 GAILNRVTSEKTELS---REEIEALLEVPVLGTV-PEDPEVKRASAYGVPLVVKNPTSPA 222
++ + +T+L+ +E+ VL TV P +V A Y + ++ +P S
Sbjct: 264 TTVILTMYDGRTKLADQVADEVRQYFGSKVLRTVIPRSVKVSEAPGYSMTIIDYDPGSRG 323
Query: 223 AIAYKEIAAKLA 234
A++Y + + +LA
Sbjct: 324 AMSYLDASRELA 335
>dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens]
Length = 271
Score = 75.7 bits (183), Expect = 5e-13
Identities = 70/251 (27%), Positives = 114/251 (44%), Gaps = 28/251 (11%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I+ SGKGG GK+T + +AL GK V ++D D+ ++ +LG + V H
Sbjct: 17 ILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAV--HQCDR 74
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKA---RAERLRDLIRE-ISQMG----DFILI 117
G A + + + ++ G LEK +A R + LI++ +S + D++++
Sbjct: 75 GWAPV---FLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVV 131
Query: 118 DAPAGL---ELTSITALLIGKEL--IIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILN- 171
D P G + +I AL + L ++VT P+ ++ D + K G +G + N
Sbjct: 132 DTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENM 191
Query: 172 ---------RVTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPA 222
TS + EE+ L VP LG+VP DP + R G + + P SPA
Sbjct: 192 SGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDSIQEFPGSPA 251
Query: 223 AIAYKEIAAKL 233
A IA K+
Sbjct: 252 FAALTSIAQKI 262
>pir||A82577 chromosome partitioning protein XF2282 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107443|gb|AAF85081.1|AE004040_6 (AE004040)
chromosome partitioning protein [Xylella fastidiosa]
Length = 264
Score = 75.7 bits (183), Expect = 5e-13
Identities = 64/248 (25%), Positives = 108/248 (42%), Gaps = 26/248 (10%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTLH 61
R I A+ KGG GKTTT N+ L + + V+L+D D + N ++ G++ + +
Sbjct: 3 RIIAIANQKGGVGKTTTAVNLAAGLVRASERVLLVDLD-SQGNATMGSGVDKNGLISSTC 61
Query: 62 DVLAGEADLKDAIYEGPAGVKVIPGGLSLEKI------KKARAERLRDLIREISQMGDFI 115
+VL GE + ++ P G ++PG + L + R +RL+ + I DFI
Sbjct: 62 EVLLGERSVAESRARAPEGFDLLPGNIDLTAAAIQLMEQSEREQRLKRALSPIRHEYDFI 121
Query: 116 LIDAPAGLELTSITALLIGKELIIVTNPE-------------IAAITDSLKTKLVAEKLG 162
LID P L L ++ AL +I+ E I A+ +L +L E +
Sbjct: 122 LIDCPPALSLLTVNALTAADSVIVPMQCEYYALEGLSALLETIEALRVNLNPRLEIEGVL 181
Query: 163 TLPLGAILNRVTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPA 222
N + TEL+ + + VP + + A +YG +V + S
Sbjct: 182 RTMFDIRNNLANAVSTELTEHFGDKVFRT----IVPRNVRLAEAPSYGKSIVGYDGASRG 237
Query: 223 AIAYKEIA 230
++AY +A
Sbjct: 238 SVAYLGLA 245
>pir||B75038 soj protein homolog PAB0852 - Pyrococcus abyssi (strain Orsay)
>gi|5458712|emb|CAB50199.1| (AJ248287) SOJ PROTEIN
homolog [Pyrococcus abyssi]
Length = 257
Score = 75.3 bits (182), Expect = 7e-13
Identities = 59/252 (23%), Positives = 119/252 (46%), Gaps = 18/252 (7%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDI---PVT 59
G I A+ KGG GKTT N+G +L++ GK V+L+D D ++GM+ +
Sbjct: 2 GTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKN 61
Query: 60 LHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIK------KARAERLRDLIREISQMGD 113
+ ++ E+ ++D + E + +IP L+L + R RL ++ I D
Sbjct: 62 VGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYD 121
Query: 114 FILIDAPAGLELTSITALLIGKELIIVTNPEIAAITD-----SLKTKLVAEKLGTLPLGA 168
+I+ID P + + + +L ++I + +L + + E L L
Sbjct: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
Query: 169 ILNRVTSEKTELSREEIEALLEV----PVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAI 224
I+ +++T++ + ++ L E+ P+L T+P+ +++A A G + P A+
Sbjct: 182 IVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASK 241
Query: 225 AYKEIAAKLAGI 236
A++++A ++ I
Sbjct: 242 AFEKLAREVISI 253
>pir||D81426 parA family protein Cj0100 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967594|emb|CAB72584.1|
(AL139074) parA family protein [Campylobacter jejuni]
Length = 261
Score = 75.3 bits (182), Expect = 7e-13
Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 33/260 (12%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGM--EDIPVTLHDV 63
I A+ KGG GKTTT N+ +LA K V+LID D AN + LG + ++ V
Sbjct: 5 ITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVD-PQANATTGLGFNRNNYEYNIYHV 63
Query: 64 LAGEADLKDAIYE--------GPAGVKVIPGGLSLEKIKKARAER---LRDLIREISQMG 112
G L D I + P+ + ++ G+ E K E+ L++ I+E+
Sbjct: 64 FIGRKKLSDIILKTELPQLHLAPSNIGLV--GIEQELAKGENNEKKMLLKNQIQEVIDEY 121
Query: 113 DFILIDAPAGLELTSITALLIGKELIIVTNPEIAA---ITDSLKTKLVAEKL--GTLPLG 167
DFI+ID+P L +I A +II E A + L T + +K L +
Sbjct: 122 DFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGVAMVLNTIKIIKKTINSKLRVR 181
Query: 168 AILNRVTSEKTELSREEIEALLE------VPVLG------TVPEDPEVKRASAYGVPLVV 215
L + S + LS++ ++ L + + G +P + ++ + ++G P+++
Sbjct: 182 GFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNEDDFIVIPRNVKLAESPSFGKPIIL 241
Query: 216 KNPTSPAAIAYKEIAAKLAG 235
+ SP ++AY+ +A + G
Sbjct: 242 YDIKSPGSVAYQNLAYSILG 261
>emb|CAC06097.1| (AJ010494) ParA protein [Listeria monocytogenes]
Length = 250
Score = 74.9 bits (181), Expect = 9e-13
Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 19/246 (7%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTLHDV 63
I A+ KGG GKTT+ N+ +LA GK V+L+D D N S +G+ +I ++DV
Sbjct: 2 IALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDID-PQGNASSGVGVNKGEIEHCIYDV 60
Query: 64 LAGEADLKDAIYEGPA-GVKVIPGGLSLEKIKK------ARAERLRDLIREISQMGDFIL 116
L + ++D + + + VIP + L + +R RL+ I I D+++
Sbjct: 61 LVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAISREIRLKKAIDSIRDDYDYVI 120
Query: 117 IDAPAGLELTSITALLIGKELIIVTNPE---IAAITDSLKTKLVAEK--LGTLPLGAILN 171
ID P L L ++ AL ++I E + ++ L T + +K L + +L
Sbjct: 121 IDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQLLNTIRIVQKHLNEDLQIEGVLL 180
Query: 172 RVTSEKTELS---REEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSPAAIAYK 227
+ +T L EE++ + V T +P + + A ++G P+++ + S A Y
Sbjct: 181 TMLDARTNLGIQVIEEVKKYFQNKVFNTIIPWNVRLSEAPSHGKPILLYDAKSKGAEVYL 240
Query: 228 EIAAKL 233
E+A ++
Sbjct: 241 ELAKEV 246
>sp|Q57853|Y410_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0410 >gi|2128304|pir||B64351
hypothetical protein MJ0410 - Methanococcus jannaschii
>gi|1591116|gb|AAB98399.1| (U67493) hypothetical protein
[Methanococcus jannaschii]
Length = 264
Score = 74.5 bits (180), Expect = 1e-12
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 15/215 (6%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I F + +GGTGKTT AN L+Q K ILID DI +++ G+ED L+ LA
Sbjct: 3 IGFYNIQGGTGKTTVAANFAYILSQSVK-TILIDCDIYGGTTAVLFGLEDKEHNLNTYLA 61
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKI-KKARAERLRDLIREISQMGDFILIDAPAGLE 124
G++ ++D IY + +I +S + K+ R L++E+ + D I+ D P +
Sbjct: 62 GDSAIEDIIYHYD-DLAIIHTDVSSKVFGYKSDLNRFETLVKELEEEYDVIIYDFPPNIT 120
Query: 125 LTSITALLIGK-----ELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE 179
+ +G+ ++++V I +I +SLKT + LG G I+N+ T+
Sbjct: 121 EDNPLIGYVGEFELVNKVVVVGEDSIPSIVNSLKTIELITDLGIGLTGIIVNKYRG-LTD 179
Query: 180 LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLV 214
+S E I+ V+G +P D V+R P+V
Sbjct: 180 IS-EIID-----DVIGVLPYDQNVERQWVESTPIV 208
>pir||T36875 probable partitioning or sporulation protein - Streptomyces
coelicolor >gi|5738488|emb|CAB52836.1| (AL109848)
putative partitioning or sporulation protein
[Streptomyces coelicolor A3(2)]
Length = 340
Score = 74.5 bits (180), Expect = 1e-12
Identities = 70/256 (27%), Positives = 123/256 (47%), Gaps = 38/256 (14%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTLHDV 63
I + KGG GKTT+ N+G ALA++G+ V+L+D D LS+ LG+ ++ +T++++
Sbjct: 88 IAMCNQKGGVGKTTSTINLGAALAEYGRRVLLVDFD-PQGALSVGLGVNPMELDLTVYNL 146
Query: 64 L------AGEADLKDAIYEGPAGVKVIPGGLSLEKI------KKARAERLRDLIREISQM 111
L A E LK A+ + ++P + L + AR L+ ++ +
Sbjct: 147 LMERGMAADEVLLKTAV----PNMDLLPSNIDLSAAEVQLVSEVARESTLQRALKPLMDD 202
Query: 112 GDFILIDAPAGLELTSITALLIGKELIIVTNPE------IAAITDSLKTKLVAEKLG-TL 164
D+I+ID L L ++ AL ++I+ E +A +T++++ V E+L L
Sbjct: 203 YDYIVIDCQPSLGLLTVNALTAAHKVIVPLECEFFALRGVALLTETIEK--VQERLNPDL 260
Query: 165 PLGAILNRVTSEKTELSREEIEALLEV-------PVLGTVPEDPEVKRASAYGVPLVVKN 217
L IL + +T SRE + ++E V+G PE A G P+
Sbjct: 261 ELDGILATMYDSRTVHSREVLARVVEAFDDHVYHTVIGRTVRFPETTVA---GEPITTYA 317
Query: 218 PTSPAAIAYKEIAAKL 233
S A AY+++A ++
Sbjct: 318 SNSVGAAAYRQLAREV 333
>pir||G71495 probable chromosome partitioning ATPase-chltr plasmid protein
homolog gp5d - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3329025|gb|AAC68184.1| (AE001329) chromosome
partitioning ATPase-CHLTR plasmid protein homolog GP5D
[Chlamydia trachomatis]
Length = 255
Score = 74.1 bits (179), Expect = 1e-12
Identities = 70/252 (27%), Positives = 124/252 (48%), Gaps = 27/252 (10%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGK-DVILIDADITMANLSLILGME-DIPVTLH 61
++I S KGGT KT+T ++G ALAQ+ K V+LID D ANL+ LG++ D +L
Sbjct: 2 KTIAVNSFKGGTAKTSTTLHLGAALAQYHKARVLLIDFD-AQANLTAGLGLDPDCYDSLA 60
Query: 62 DVLAGEADLKDAIYE-GPAGVKVIPGGLSLEKIKKARA--------ERLRDLIREISQMG 112
VL GE ++++ I +G+ +IP LE+++ + + ERL+ ++ +I
Sbjct: 61 VVLQGEKNIEEVIRPIDSSGLDLIPADTWLERVEVSGSLAADRYSHERLKIILSKIEHRY 120
Query: 113 DFILIDAPAGLELTSITALLIGKELIIVTNPE---------IAAITDSLKTKLVAEKLG- 162
D+++ID P L + +AL+ + +I PE +A + ++ LG
Sbjct: 121 DYVIIDTPPSLCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGISSRHPLNILGV 180
Query: 163 TLPLGAILNRVTSEKTELSREEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSP 221
TL + + TEL I+ +L T + D + A+ +G P+ P++
Sbjct: 181 TLSFWNYRGKNNAAFTEL----IQKTFPGKLLNTRIRRDITISEAAIHGKPVFSTAPSAR 236
Query: 222 AAIAYKEIAAKL 233
A+ Y ++ +L
Sbjct: 237 ASEDYLKLTEEL 248
>pir||B81656 ParA family protein TC0871 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190898|gb|AAF39667.1| (AE002353) ParA
family protein [Chlamydia muridarum]
Length = 255
Score = 74.1 bits (179), Expect = 1e-12
Identities = 70/252 (27%), Positives = 121/252 (47%), Gaps = 27/252 (10%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGK-DVILIDADITMANLSLILGME-DIPVTLH 61
++I S KGGT KT+T ++G ALAQ+ K V+LID D ANL+ LG++ D +L
Sbjct: 2 KTIAVNSFKGGTAKTSTTLHLGAALAQYHKARVLLIDFD-AQANLTAGLGLDPDCYDSLA 60
Query: 62 DVLAGEADLKDAIYE-GPAGVKVIPGGLSLEKIKKARA--------ERLRDLIREISQMG 112
VL GE + + I +G+ +IP LE+++ + + ERL+ ++ I
Sbjct: 61 VVLQGEKQISEVIRSIDSSGLDLIPADTWLERVEVSGSLAADRYSHERLKTILSTIEHQY 120
Query: 113 DFILIDAPAGLELTSITALLIGKELIIVTNPE---------IAAITDSLKTKLVAEKLG- 162
D+++ID P L + +AL+ + +I PE +A + ++ LG
Sbjct: 121 DYVIIDTPPSLCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGISSRHPLNILGV 180
Query: 163 TLPLGAILNRVTSEKTELSREEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSP 221
TL + + TEL I+ +L T + D + A+ +G P+ P++
Sbjct: 181 TLSFWNYRGKNNAAFTEL----IQKTFPGKLLNTRIRRDITISEAAIHGKPVFSTAPSAR 236
Query: 222 AAIAYKEIAAKL 233
A+ Y ++ +L
Sbjct: 237 ASEDYLKLTEEL 248
>emb|CAC01353.1| (AL390975) putative ATP-binding protein [Streptomyces coelicolor
A3(2)]
Length = 377
Score = 74.1 bits (179), Expect = 1e-12
Identities = 69/257 (26%), Positives = 109/257 (41%), Gaps = 34/257 (13%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R ASGKGG GK++ N+ ++A G V ++DADI ++ +LG + P + ++
Sbjct: 112 RVYAVASGKGGVGKSSVTVNLAASMAADGLKVGVVDADIYGHSVPRMLGADGRPTQVENM 171
Query: 64 LAGEADLKDAIYEGPAGVKVI------PGGLSLEKIKKARAERLRDLIREISQMG-DFIL 116
+ + GVKVI PG + L+ + ++ D +L
Sbjct: 172 IMPPS---------AHGVKVISIGMFTPGNAPVVWRGPMLHRALQQFLADVYWGDLDVLL 222
Query: 117 IDAPAGLE--LTSITALLIGKELIIVTNPEIAA-----------ITDSLKTKLVAEKLGT 163
+D P G S+ L+ E+++VT P+ AA + K V E +
Sbjct: 223 LDLPPGTGDIAISVAQLVPNAEILVVTTPQQAAAEVAERAGAIAVQTHQKIVGVVENMSG 282
Query: 164 LPLGAILNRVTSEKTELSREEIEALLE-----VPVLGTVPEDPEVKRASAYGVPLVVKNP 218
LP V T + + L VPVLG +P D ++ G P+V+ +P
Sbjct: 283 LPCPHCGEMVDVFGTGGGQTVADGLTRTTGASVPVLGAIPIDVRLREGGDEGKPVVLSDP 342
Query: 219 TSPAAIAYKEIAAKLAG 235
SPA A + IA KL G
Sbjct: 343 DSPAGAALRSIAGKLGG 359
>pir||D75131 mrp-family probable nucleotide-binding protein PAB1795 - Pyrococcus
abyssi (strain Orsay) >gi|5458276|emb|CAB49765.1|
(AJ248285) MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 295
Score = 73.7 bits (178), Expect = 2e-12
Identities = 71/256 (27%), Positives = 123/256 (47%), Gaps = 35/256 (13%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
+ SGKGG GK+T N+ ALA+ G V ++DADI N++ +LG+E +
Sbjct: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
Query: 66 GEADLKDAIYE---GPAGVKVIPGGLSLEK----------IKKARAERLRDLIREISQMG 112
G ++ + + +KV+ G+ + + + KA + L D+ + G
Sbjct: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDV-----KWG 147
Query: 113 --DFILIDAPAGL--ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGA 168
DF++ID P G E+ ++ + IIVT P+ A+ D+ K + +K+ +P A
Sbjct: 148 SLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKM-EVPYIA 206
Query: 169 ILNRVT-------SEKTEL----SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKN 217
++ ++ K ++ E++ V LG +P D + + AS G+P+V+
Sbjct: 207 VVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYG 266
Query: 218 PTSPAAIAYKEIAAKL 233
T PAA A+ EIA KL
Sbjct: 267 DT-PAAKAFMEIAEKL 281
>sp|P72190|YCAB_PSEFR HYPOTHETICAL 30.2 KD PROTEIN IN CAPB 3'REGION
>gi|1513082|gb|AAC45998.1| (U62986) ATPase [Pseudomonas
fragi]
Length = 287
Score = 73.7 bits (178), Expect = 2e-12
Identities = 67/255 (26%), Positives = 115/255 (44%), Gaps = 47/255 (18%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED---------- 55
+ ASGKGG GK+TT AN+ +ALA+ G V ++DADI + ++ G+ +
Sbjct: 42 VAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGVMFGIAEGTRPKIRDQK 101
Query: 56 --IPVTLHDV-LAGEADLKD----AIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREI 108
+P+ H V + A L D ++ GP + G L+ + + L
Sbjct: 102 WFVPIEAHGVEVMSMAFLTDDNTPMVWRGP-----MVSGALLQLVTQTAWNDL------- 149
Query: 109 SQMGDFILIDAPAG---LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLP 165
D+++ID P G ++LT + + +IVT P+ A+ D+ K + K+
Sbjct: 150 ----DYLVIDMPPGTGDIQLTLAQKVPVAGS-VIVTTPQDLALLDARKGVEMFRKVNIPV 204
Query: 166 LGAILNRVTSEKT----------ELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVV 215
LG + N + E E++ V VL ++P E++ + G P +
Sbjct: 205 LGVVENMAVHICSNCGHAEHLFGEGGGEKLATQYGVEVLASLPLAMEIREQADNGKPTAI 264
Query: 216 KNPTSPAAIAYKEIA 230
+P SP A+ Y+E+A
Sbjct: 265 ADPNSPIALIYQELA 279
>gb|AAF00142.1|AF149810_1 (AF149810) cell division inhibitor MinD homolog [Oryza sativa]
Length = 179
Score = 73.4 bits (177), Expect = 3e-12
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHD 62
R +V SGKGG GKTTT AN+ +LA+ + +DAD + NL L+LG+E+ + +T D
Sbjct: 37 RVVVVTSGKGGVGKTTTTANLAASLARLSLSAVAVDADAGLRNLDLLLGLENRVHLTAAD 96
Query: 63 VLAGEADLKDAIYEGPA--GVKVIPGGLSLEKIKKARAER----LRDLIREISQMGDFIL 116
VLAG+ L A+ A ++++ K+ A + + D +R + FIL
Sbjct: 97 VLAGDCRLDQALVRHRALHDLQLLCLSKPRSKLPLAFGSKTLTWVADALRRAANPPAFIL 156
Query: 117 IDAPAG 122
ID PAG
Sbjct: 157 IDCPAG 162
>pir||E71274 probable ATP-binding protein (ylxH-2) - syphilis spirochete
>gi|3323165|gb|AAC65818.1| (AE001255) ATP-binding
protein (ylxH-2) [Treponema pallidum]
Length = 378
Score = 73.0 bits (176), Expect = 3e-12
Identities = 70/289 (24%), Positives = 118/289 (40%), Gaps = 61/289 (21%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I ASGKGG GK+ AN+ +AL Q GK V++ D D+ +NL L LG + + L
Sbjct: 4 IPIASGKGGVGKSLLAANLSIALGQAGKKVVVADLDLGASNLHLALGQKGNKHGVGTFLM 63
Query: 66 GEADLKD-AIYEGPAGVKVIPGGLSLEKIKKARAERLRDL-IREISQMGDFILIDAPAGL 123
G + ++ + G V ++PG + + + R L + + D++++D AG
Sbjct: 64 GASSFEEIMVPTGYPNVYLVPGDSEIPGFAALKVSQRRALTVGLLKTHADYVVLDLGAGT 123
Query: 124 ELTSITALLIGKELIIVTNPEIAAI----------------------------TDSLKTK 155
L + L+ IIVT P ++A+ ++LK+
Sbjct: 124 HLGVLEFFLLSSRGIIVTEPAVSAVLNAYLFLKNVVFKMLCAAFKKGTGGSIFLENLKSD 183
Query: 156 LVA-------------EKLGTLPLGAILNRVTS----------------EKTELSREEIE 186
A E++ + +L+R+ S +K R E
Sbjct: 184 AAAVQRMYVPKILAELERVDQRGVAVLLDRMRSFRPRLVMNMIADPKDVDKALKIRRSCE 243
Query: 187 ALLEVPV--LGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKL 233
L + + LG + +D + A + G+P+VV P S A A IA K+
Sbjct: 244 QYLNITLEYLGVIYQDTQQNVALSSGLPIVVYKPQSLIAQAVYRIADKI 292
>sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir||H71085 probable MRP
protein - Pyrococcus horikoshii
>gi|3257363|dbj|BAA30046.1| (AP000004) 295aa long
hypothetical MRP protein [Pyrococcus horikoshii]
Length = 295
Score = 72.6 bits (175), Expect = 4e-12
Identities = 67/251 (26%), Positives = 121/251 (47%), Gaps = 25/251 (9%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I SGKGG GK+T N+ ALA+ G V ++DADI N++ +LG++ V
Sbjct: 33 IAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVDKEEVYAEKFDD 92
Query: 66 GEADLKDAIYE---GPAGVKVIPGGLSLEKIKKA------RAERLRDLIREISQMG-DFI 115
G ++ + +KV+ G+ + + + + ++ L+ ++ DF+
Sbjct: 93 GHFEMIPPTTDFMGQVTPIKVMSMGMMVPEDQPVIWRGPLVTKAIKQLLGDVKWGSLDFM 152
Query: 116 LIDAPAGL--ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRV 173
+ID P G E+ ++ + IIVT P+ A+ D+ K + +K+ +P A++ +
Sbjct: 153 IIDFPPGTGDEILTVVQSIKLDAAIIVTTPQEVALLDTGKAVNMMKKM-EVPYVAVVENM 211
Query: 174 T-------SEKTEL----SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPA 222
+ K ++ E++ V LG +P D + + AS G+P+V+ T PA
Sbjct: 212 SYLICPHCGNKIDIFGEGGGEKLAQKEGVDFLGKIPIDLKAREASDLGIPIVLYEDT-PA 270
Query: 223 AIAYKEIAAKL 233
A A+ E+A KL
Sbjct: 271 AKAFMELAEKL 281
>gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacterium sp. NRC-1]
Length = 343
Score = 72.2 bits (174), Expect = 6e-12
Identities = 72/262 (27%), Positives = 111/262 (41%), Gaps = 56/262 (21%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED---------- 55
+ ASGKGG GK+T N+ AL+ G V L DADI N+ ++ +D
Sbjct: 92 VAVASGKGGVGKSTVAVNLAAALSDRGARVGLFDADIYGPNVPRMVDADDHPQATETETI 151
Query: 56 IPVTLHDV-------LAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREI 108
+P H + + GE D I+ GP KV L LI ++
Sbjct: 152 VPPEKHGMKLMSMAFMVGEDD--PVIWRGPMVHKV-----------------LTQLIEDV 192
Query: 109 SQMG--DFILIDAPAGLELTSITAL----LIGKELIIVTNPEIAAITDSLKTKLVAEKLG 162
+ G D++++D P G T +T L L G ++VT PE A+ D+ K + +
Sbjct: 193 -EWGYLDYLVVDLPPGTGDTQLTLLQTLPLTGS--VVVTTPEDVAVDDARKGLRMFGRHD 249
Query: 163 TLPLGAILNRVTSEKTEL----------SREEIEALLEVPVLGTVPEDPEVKRASAYGVP 212
T LG + N + + EE E+P LG++P DP V+ G P
Sbjct: 250 TTVLGVVENMSSFVCPDCGGTHDIFGAGGGEEFATANELPFLGSIPLDPSVRAGGDNGQP 309
Query: 213 LVVKNPTSPAAIAYKEIAAKLA 234
V +P + +++ AA+ A
Sbjct: 310 -VALDPDNETGASFRTFAAETA 330
>pir||E82035 ParA family protein VC2773 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657375|gb|AAF95912.1| (AE004343)
ParA family protein [Vibrio cholerae]
Length = 257
Score = 71.8 bits (173), Expect = 8e-12
Identities = 63/250 (25%), Positives = 115/250 (45%), Gaps = 21/250 (8%)
Query: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPV--TL 60
G+ + A+ KGG GKTTT N+ ++A + V+++D D N ++ G++ V T
Sbjct: 2 GKIVAIANQKGGVGKTTTCINLAASMAATKRKVLVVDLD-PQGNATMASGVDKYQVDSTA 60
Query: 61 HDVLAGEADLKDAIYEGPAG---VKVIPGGLSLEKIKK----ARAERLRDLIREISQMGD 113
+++L +A + G + G ++ +IK AR RL++ + + D
Sbjct: 61 YELLVEDAPFDQVVCRKTTGHYDLIAANGDVTAAEIKLMEVFAREVRLKNALASVRDNYD 120
Query: 114 FILIDAPAGLELTSITALLIGKELIIVTNPE------IAAITDSLKTKLVAEKLGTLPLG 167
FI ID P L L +I A+ +++ E + A+ D++ +KL A L +
Sbjct: 121 FIFIDCPPSLNLLTINAMAAADSVLVPMQCEYFALEGLTALMDTI-SKLAAVVNDNLKIE 179
Query: 168 AILNRVTSEKTELSREEIEALLE---VPVLGTV-PEDPEVKRASAYGVPLVVKNPTSPAA 223
IL + + L+ E + L + V TV P + + A ++G P + + S A
Sbjct: 180 GILRTMYDPRNRLANEVSDQLKKHFGSKVYRTVIPRNVRLAEAPSHGKPAMYYDKQSAGA 239
Query: 224 IAYKEIAAKL 233
AY +A ++
Sbjct: 240 KAYLALAGEM 249
>sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 probable mrp protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|3261828|emb|CAB10925.1| (Z98260) mrp [Mycobacterium
tuberculosis]
Length = 390
Score = 71.4 bits (172), Expect = 1e-11
Identities = 68/253 (26%), Positives = 112/253 (43%), Gaps = 29/253 (11%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R ASGKGG GK+T N+ A+A G + ++DADI ++ ++G D P + +
Sbjct: 127 RVYAVASGKGGVGKSTVTVNLAAAMAVRGLSIGVLDADIHGHSIPRMMGTTDRPTQVESM 186
Query: 64 ----LAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMG-DFILID 118
+A + + V+ G L + L+ + ++ D +L+D
Sbjct: 187 ILPPIAHQVKVISIAQFTQGNTPVVWRGPMLHR-------ALQQFLADVYWGDLDVLLLD 239
Query: 119 APAGL--ELTSITALLIGKELIIVTNPEIAAI-------TDSLKTKL----VAEKLG--T 163
P G S+ L+ EL++VT P++AA + +L+T+ V E + T
Sbjct: 240 LPPGTGDVAISVAQLIPNAELLVVTTPQLAAAEVAERAGSIALQTRQRIVGVVENMSGLT 299
Query: 164 LPLGAILNRVTSEKTELSREEIEALL--EVPVLGTVPEDPEVKRASAYGVPLVVKNPTSP 221
LP G + L E + + +VP+LG +P DP + A GVPLV+ +P S
Sbjct: 300 LPDGTTMQVFGEGGGRLVAERLSRAVGADVPLLGQIPLDPALVAAGDSGVPLVLSSPDSA 359
Query: 222 AAIAYKEIAAKLA 234
IA L+
Sbjct: 360 IGKELHSIADGLS 372
>pir||F75448 mrp protein - Deinococcus radiodurans (strain R1)
>gi|6458727|gb|AAF10574.1|AE001952_2 (AE001952) mrp
protein [Deinococcus radiodurans]
Length = 350
Score = 71.4 bits (172), Expect = 1e-11
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 26/248 (10%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHD--- 62
++ SGKGG GK++ N+ +LA+ G V L+DAD+ +++ +LG VT ++
Sbjct: 94 VLVGSGKGGVGKSSVAVNLAASLARDGARVGLLDADVYGPSVAHMLGQGQARVTANEDRK 153
Query: 63 ---VLAGEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREISQMG--DFILI 117
+ A PAG ++ G L A + L+D S G D++++
Sbjct: 154 MRPIEAHGVRFISMANLSPAGQALVWRGPMLH---SAIQQFLKD-----SAWGELDYLIV 205
Query: 118 DAPAGL--ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNR--V 173
D P G S+T + +IVT P+ A+ D+ + + K LG + N
Sbjct: 206 DLPPGTGDVQLSLTQTVQVTGAVIVTTPQDVALIDAARAIDMFRKASVPVLGVVENMSYF 265
Query: 174 TSEKTELSRE------EIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYK 227
+ T L+ + + + P+LG +P D EV++ + G P ++ +P S AA A +
Sbjct: 266 VAPDTGLTYDIFGRGGSRKLGEQYPLLGEIPLDVEVRKDADAGAPAILAHPESVAAQALR 325
Query: 228 EIAAKLAG 235
+A LAG
Sbjct: 326 AVARTLAG 333
>gi|10957571 virulence plasmid ParA family protein pGP5-D [Chlamydia muridarum]
>gi|7190956|gb|AAF39717.1| (AE002162) virulence plasmid
ParA family protein pGP5-D [Chlamydia muridarum]
Length = 268
Score = 71.4 bits (172), Expect = 1e-11
Identities = 75/239 (31%), Positives = 115/239 (47%), Gaps = 22/239 (9%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQF-GKDVILIDADITMANLSLILG--MEDIPVTL 60
+++VF S KGGTGKTT N+G LAQF GK V+LID D +NLS LG +E L
Sbjct: 6 QTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKRVLLIDLD-PQSNLSSGLGASIEGNHKGL 64
Query: 61 HDVLAGEADLKDAIYE-GPAGVKVIPGGLSLEKIKK-----ARAERLRDLIRE-ISQMGD 113
H+V+ DLK I + GV +IP E+ ++ + LR + E S + D
Sbjct: 65 HEVMCASNDLKSIICKTKKTGVDIIPASFLSEQFREFSTNGIPSSNLRLFLDEYCSPLYD 124
Query: 114 FILIDAPAGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLP----LGAI 169
++D P L + A + G +LI+ PE +I K + +G LG
Sbjct: 125 VCIVDTPPSLGGLTKEAFIAGDKLIVCLIPEPFSILGLQKIREFLISIGKPEEEHILGVA 184
Query: 170 L----NRVTSEKTELSREEIEALLEVPVLGT-VPEDPEVKRASAYGVPLVVKNPTSPAA 223
L +R ++ +T + + IE++ E + T + D + R+ ++ PTS AA
Sbjct: 185 LSFWDDRSSTNQTYI--DIIESIYENKIFSTKIRRDISLSRSLLKEDSVINVYPTSRAA 241
>emb|CAB89207.1| (AJ277593) putative partitioning protein [Thermus thermophilus]
Length = 248
Score = 70.2 bits (169), Expect = 2e-11
Identities = 65/241 (26%), Positives = 111/241 (45%), Gaps = 17/241 (7%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R I A+ KGG GKTTT N+ LA+ GK V+L+D D N + LG+ H +
Sbjct: 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLD-PQGNATSGLGVRAERGVYH-L 64
Query: 64 LAGEADLKDAIYEGPAGVKVIPGGLSL--EKIKKARAERLRDLIREISQMGDFILIDAPA 121
L GE + + G ++P L ++ A A R +++R+ + D +L+DAP
Sbjct: 65 LQGEP--LEGLVHPVDGFHLLPATPDLVGATVELAGAPRPAEVLRD--EGYDLVLLDAPP 120
Query: 122 GLELTSITALLIGKELIIVTNPEIAAI--TDSLKTKLVAEKLGTLPLGAILNRVTS--EK 177
L ++ AL + +++ E A+ L L + G P +L + + +
Sbjct: 121 SLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLAHLEEVRAGLNPSLRLLGILVTMYDG 180
Query: 178 TELSREEIEALL-----EVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAK 232
L +++EA L E +P + + A ++G + PTSP A AY+ +A +
Sbjct: 181 RTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEE 240
Query: 233 L 233
+
Sbjct: 241 V 241
>pir||C70504 hypothetical protein Rv1708 - Mycobacterium tuberculosis (strain
H37RV) >gi|2326751|emb|CAB10965.1| (Z98268) hypothetical
protein Rv1708 [Mycobacterium tuberculosis]
Length = 318
Score = 69.1 bits (166), Expect = 5e-11
Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 28/251 (11%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGME--DIPVTLHDV 63
I + KGG GKTT+ N+G AL ++G+ V+L+D D LS LG+ ++ T+H+V
Sbjct: 67 IAMCNQKGGVGKTTSTINLGAALGEYGRRVLLVDMD-PQGALSAGLGVPHYELDKTIHNV 125
Query: 64 LA-GEADLKDA-IYEGPAGVKVIPGGLSLEKI------KKARAERLRDLIREISQMGDFI 115
L + D I+ + ++P + L + R + L + + D++
Sbjct: 126 LVEPRVSIDDVLIHSRVKNMDLVPSNIDLSAAEIQLVNEVGREQTLARALYPVLDRYDYV 185
Query: 116 LIDAPAGLELTSITALLIGKELIIVTNPE------IAAITDSLKTKLVAEKLG-TLPLGA 168
LID L L ++ L +II T E +A +TD++ V ++L L +
Sbjct: 186 LIDCQPSLGLLTVNGLACTDGVIIPTECEFFSLRGLALLTDTVDK--VRDRLNPKLDISG 243
Query: 169 ILNRVTSEKTELSREEIEALLEVPVLGTVPEDPEVKR------ASAYGVPLVVKNPTSPA 222
IL +T SRE + ++E G + D + R S G P+ P S
Sbjct: 244 ILITRYDPRTVNSREVMARVVE--RFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSAG 301
Query: 223 AIAYKEIAAKL 233
A+AY+ +A +L
Sbjct: 302 ALAYRALAREL 312
>sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199 probable mrp protein
[imported] - Mycobacterium leprae
>gi|699143|gb|AAA62909.1| (U15180) MRP protein
[Mycobacterium leprae]
Length = 435
Score = 68.7 bits (165), Expect = 7e-11
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 43/260 (16%)
Query: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
R ASGKGG GK+T N+ A+A G V ++DADI ++ ++G P+ L +
Sbjct: 172 RVYTVASGKGGVGKSTVTVNLATAIAARGLAVGVLDADIHGHSIPRMMGSNQRPIQLESM 231
Query: 64 LAGEADLKDAIYEGPAGVKVIPGGLSLE----------KIKKARAERLRDLIREISQMGD 113
+ L ++E VKVI G E + +A + L D+ GD
Sbjct: 232 I-----LPPIVHE----VKVISIGQFTEGNTPVIWRGPMLHRALQQFLSDV-----YWGD 277
Query: 114 F--ILIDAPAGLE--LTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAI 169
+++D P G S+ L+ E+++VT P++AA + + +A + +G +
Sbjct: 278 LDVLMLDLPPGTGDIAISVAQLIPNAEILVVTTPQLAAAEVAERAGSIALQTRQRIVGVV 337
Query: 170 LNRVTSEKTELSREEI----------EAL-----LEVPVLGTVPEDPEVKRASAYGVPLV 214
N + SR ++ E L +VP+LG +P DP + A G+P+V
Sbjct: 338 ENMSGLMMPDGSRLQVFGEGGGQQVAERLSRAVGTDVPLLGQIPLDPALVAAGDSGIPIV 397
Query: 215 VKNPTSPAAIAYKEIAAKLA 234
+ SP IA L+
Sbjct: 398 LNASDSPVGKELLRIADGLS 417
>sp|Q58334|Y924_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0924 >gi|2127790|pir||D64415
capsular polysaccharide biosynthesis protein homolog -
Methanococcus jannaschii >gi|1591597|gb|AAB98928.1|
(U67536) capsular polysaccharide biosynthesis protein,
putative (cap8B) [Methanococcus jannaschii]
Length = 263
Score = 68.7 bits (165), Expect = 7e-11
Identities = 59/216 (27%), Positives = 108/216 (49%), Gaps = 25/216 (11%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
I F+ KGGTGKT AN ALA+ GK ++LID D+ +LS +L ++ + L D++
Sbjct: 11 ITFSIAKGGTGKTIITANAAAALAKKGKKILLIDGDVGSKSLSHLLNVKS-NIFLADIIE 69
Query: 66 GEADLKDAIYEGPAGVKVIPGGLSLEKIKKARAERLR---DLIREISQMG--DFILIDAP 120
E +KDAI P + L + K+ A+ L+ ++++ ++G D++ IDAP
Sbjct: 70 EERPIKDAIVNTPI------ENIELLAVGKSLADYLKFDINILKRFKELGDYDYVFIDAP 123
Query: 121 ---AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLG-----TLPLGAILNR 172
+G+E T L +G + + A SL+ + +G + P G I+N+
Sbjct: 124 STSSGVE----TYLALGLSDYFIPVLDYTAFGPSLQGAINTIVIGKNYLESTPAGFIINK 179
Query: 173 VTSEKTELSREEIEALLEVPVLGTVPEDPEVKRASA 208
+ E +I+ +L + + + ++ V+++ A
Sbjct: 180 -AEDLPESVINDIKKILGLECISIIHKNSLVEQSYA 214
>pir||B83210 conserved hypothetical protein PA3481 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949626|gb|AAG06869.1|AE004769_2 (AE004769)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 364
Score = 68.7 bits (165), Expect = 7e-11
Identities = 66/255 (25%), Positives = 115/255 (44%), Gaps = 47/255 (18%)
Query: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED---------- 55
+ ASGKGG GK+TT AN+ +ALA+ G V ++DADI + ++ G+ +
Sbjct: 102 VAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGIMFGLPEGTRPKVREQK 161
Query: 56 --IPVTLHDV-LAGEADLKD----AIYEGPAGVKVIPGGLSLEKIKKARAERLRDLIREI 108
P+ H V + A L D ++ GP + G ++ I + + L
Sbjct: 162 WFEPLEAHGVQVMSMAFLTDDSTPVVWRGP-----MVSGALIQLITQTAWDNL------- 209
Query: 109 SQMGDFILIDAPAG---LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLP 165
D++++D P G ++LT + + +IVT P+ A+ D+ K + K+
Sbjct: 210 ----DYLVVDMPPGTGDIQLTLAQKVPVA-GAVIVTTPQDLALLDAKKGVEMFRKVNIPV 264
Query: 166 LGAILNRVTSEKT----------ELSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVV 215
LG + N + E E++ A V +L ++P ++ + G P V+
Sbjct: 265 LGVVENMAVHICSNCGHAEHLFGEGGGEKLAAQFGVELLASMPLSIAIRTQADSGRPTVI 324
Query: 216 KNPTSPAAIAYKEIA 230
+P S A+ Y+EIA
Sbjct: 325 ADPESQLAMLYQEIA 339
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.374
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93061869
Number of Sequences: 2977
Number of extensions: 3773702
Number of successful extensions: 14686
Number of sequences better than 1.0e-10: 101
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 14506
Number of HSP's gapped (non-prelim): 102
length of query: 260
length of database: 189,106,746
effective HSP length: 59
effective length of query: 201
effective length of database: 153,796,013
effective search space: 30912998613
effective search space used: 30912998613
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)