BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1986 533861 533253 -203 !not a gene!
         (203 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71039 hypothetical protein PH1603 - Pyrococcus horikoshii ...   180  2e-44

>pir||C71039 hypothetical protein PH1603 - Pyrococcus horikoshii
           >gi|3258032|dbj|BAA30715.1| (AP000006) 163aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 163
           
 Score =  180 bits (451), Expect = 2e-44
 Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 13  MPWWKRPSCTLPVDYNFNLLPXXXXXXXXXXXXXXXXXYAHPEV-LWVLPKYLLEALPNP 71
           MP WK P  T PVDYNFN LP                 Y H +V L +L K+ LEA P+P
Sbjct: 1   MPRWKCPRSTFPVDYNFNPLPIHFVFFNLTNIVSNIVNYIHAQVSLGILFKHFLEAFPDP 60

Query: 72  VCYHLPVGPGEVSSRLHSREVPLPFFTLERNAYKLSIWPWNPVLPYRPLHYPEIITRNLV 131
           + YHLP+ P +VSS  HS EVPLP FTLE NAY+L IWP  P+L Y PLHYP++IT NL+
Sbjct: 61  MRYHLPICPSKVSSCFHSTEVPLPLFTLEGNAYQLPIWPRYPILSYGPLHYPKVITCNLM 120

Query: 132 TETSRTCVNHNDDLTLEEPVDLCHLRIKYLVNDLNFKEVI 171
           ++ SR+ VNH+D+LT EEPV   H RIKYL+N LN KEVI
Sbjct: 121 SKPSRSRVNHDDNLTFEEPVSFSHFRIKYLINYLNLKEVI 160


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.143    0.497 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76030554
Number of Sequences: 2977
Number of extensions: 2879998
Number of successful extensions: 4471
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4469
Number of HSP's gapped (non-prelim): 1
length of query: 203
length of database: 189,106,746
effective HSP length: 44
effective length of query: 159
effective length of database: 162,773,318
effective search space: 25880957562
effective search space used: 25880957562
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 163 (67.9 bits)