BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1987 533033 532719 -105 !not a gene!
         (105 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71039 hypothetical protein PH1604 - Pyrococcus horikoshii ...    68  3e-11

>pir||D71039 hypothetical protein PH1604 - Pyrococcus horikoshii
           >gi|3258033|dbj|BAA30716.1| (AP000006) 120aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 120
           
 Score = 67.9 bits (163), Expect = 3e-11
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 8/102 (7%)

Query: 1   MDNYAVGYEVVGLMVNANVIEFGVFRLDPFNLYNLLSNEATLVTPLLGKLFKGREVILNG 60
           M++  VGYE++G MVN +V+E  VFR + FNL +L  NE+T V+ +  K FK  E+    
Sbjct: 1   MNDDTVGYEIMGTMVNTDVVELIVFRFNAFNLNDLFCNESTFVSSIPCKFFKCHEIP--- 57

Query: 61  FVSFFYNALLELKVGSRNEALDLLLGVILVVYPLNEGSNAVL 102
                ++ LLELKV   +++  L L ++L+V    E   AVL
Sbjct: 58  -----FHELLELKVSVSDKSPGLFLRIVLIVNSTQEVPYAVL 94


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.145    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35979596
Number of Sequences: 2977
Number of extensions: 1290915
Number of successful extensions: 2528
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2527
Number of HSP's gapped (non-prelim): 1
length of query: 105
length of database: 189,106,746
effective HSP length: 51
effective length of query: 54
effective length of database: 158,583,909
effective search space: 8563531086
effective search space used: 8563531086
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)