BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1990 (PAB1990) DE:Hypothetical protein
(448 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75175 hypothetical protein PAB1990 - Pyrococcus abyssi (st... 881 0.0
pir||F71039 hypothetical protein PH1606 - Pyrococcus horikoshii ... 487 e-136
pir||H71055 hypothetical protein PH1142 - Pyrococcus horikoshii ... 187 2e-46
pir||S77226 hypothetical protein sll1352 - Synechocystis sp. (st... 75 1e-12
>pir||A75175 hypothetical protein PAB1990 - Pyrococcus abyssi (strain Orsay)
>gi|5457990|emb|CAB49480.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 448
Score = 881 bits (2251), Expect = 0.0
Identities = 448/448 (100%), Positives = 448/448 (100%)
Query: 1 MKSLIDKKLLVIIFIAYTFIIFKTCLVLYENFSYKSLDLGIFSQSLYSTLNGKFMYNTVE 60
MKSLIDKKLLVIIFIAYTFIIFKTCLVLYENFSYKSLDLGIFSQSLYSTLNGKFMYNTVE
Sbjct: 1 MKSLIDKKLLVIIFIAYTFIIFKTCLVLYENFSYKSLDLGIFSQSLYSTLNGKFMYNTVE 60
Query: 61 AQLYSAPNHFAVHFQPILLLLLPVYAIMPSPVVLLLIQAIFLALSATLALLIACEELNHR 120
AQLYSAPNHFAVHFQPILLLLLPVYAIMPSPVVLLLIQAIFLALSATLALLIACEELNHR
Sbjct: 61 AQLYSAPNHFAVHFQPILLLLLPVYAIMPSPVVLLLIQAIFLALSATLALLIACEELNHR 120
Query: 121 EAILVASLYIFNSSLLGIALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLILLTKE 180
EAILVASLYIFNSSLLGIALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLILLTKE
Sbjct: 121 EAILVASLYIFNSSLLGIALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLILLTKE 180
Query: 181 DSFLGVVSLSLWKILMDGLNPESFRKNRGLILLSIASMMYGIIVIKVVIPHLGMGYIYES 240
DSFLGVVSLSLWKILMDGLNPESFRKNRGLILLSIASMMYGIIVIKVVIPHLGMGYIYES
Sbjct: 181 DSFLGVVSLSLWKILMDGLNPESFRKNRGLILLSIASMMYGIIVIKVVIPHLGMGYIYES 240
Query: 241 LYSEFELTRRKLLYFIVFNASFGFLTFLSSKGLVSVALPWLESMLSSRDTQTMIGFHYPY 300
LYSEFELTRRKLLYFIVFNASFGFLTFLSSKGLVSVALPWLESMLSSRDTQTMIGFHYPY
Sbjct: 241 LYSEFELTRRKLLYFIVFNASFGFLTFLSSKGLVSVALPWLESMLSSRDTQTMIGFHYPY 300
Query: 301 MLLPLSYLVAIEGFKKSKKVAVSLIVAGILTSMATIPITFKPPKAENPLIHFAVLKPIPG 360
MLLPLSYLVAIEGFKKSKKVAVSLIVAGILTSMATIPITFKPPKAENPLIHFAVLKPIPG
Sbjct: 301 MLLPLSYLVAIEGFKKSKKVAVSLIVAGILTSMATIPITFKPPKAENPLIHFAVLKPIPG 360
Query: 361 KDASWEAITIVKTLEGPIYTQPEFYPHLSTRIDVYVYPKGIKPRVILVNLNTWNGKRAIK 420
KDASWEAITIVKTLEGPIYTQPEFYPHLSTRIDVYVYPKGIKPRVILVNLNTWNGKRAIK
Sbjct: 361 KDASWEAITIVKTLEGPIYTQPEFYPHLSTRIDVYVYPKGIKPRVILVNLNTWNGKRAIK 420
Query: 421 RLKDFRIKLEEYKTVFKKDGVVIFIRKA 448
RLKDFRIKLEEYKTVFKKDGVVIFIRKA
Sbjct: 421 RLKDFRIKLEEYKTVFKKDGVVIFIRKA 448
>pir||F71039 hypothetical protein PH1606 - Pyrococcus horikoshii
>gi|3258035|dbj|BAA30718.1| (AP000006) 447aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 447
Score = 487 bits (1240), Expect = e-136
Identities = 237/439 (53%), Positives = 317/439 (71%), Gaps = 3/439 (0%)
Query: 11 VIIFIAYTFIIFKTCLVLYENFSYKSLDLGIFSQSLYSTLNGKFMYNTVEAQLYSAPNHF 70
+II YT I+ +Y Y+SLDLGIF+QSL+S GK YNTVE QLY+ HF
Sbjct: 9 IIISAIYTCIMLYLTYKIYNGLRYRSLDLGIFAQSLHSLSGGKLFYNTVEFQLYNVQTHF 68
Query: 71 AVHFQPILLLLLPV-YAIMPSPVVLLLIQAIFLALSATLALLIACEELNHREAILVASLY 129
VHFQPIL LL P+ + I + L++ Q I L S LA +A EEL ++ + + LY
Sbjct: 69 GVHFQPILFLLFPLLFLIKKTTYALVVSQTIALGTSVYLAYRLATEELGEKKGVALTILY 128
Query: 130 IFNSSLLGIALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLILLTKEDSFLGVVSL 189
NSSL+GI +FEFHPVSLAVPLF +AY LKRG LFY+ S LILLTKED+FLGV+S+
Sbjct: 129 ACNSSLIGINIFEFHPVSLAVPLFLLAYKFLKRGS-PLFYIISTLILLTKEDAFLGVISI 187
Query: 190 SLWKILMDGLNPESFRKNRGLILLSIASMMYGIIVIKVVIPHLGMGYIYESLYSEFELTR 249
WKIL +G + E +KN+ +I + +++YGI+ IKV+IP G YIY SLY++F + R
Sbjct: 188 IAWKILKEGFSVEILKKNKKIIFFAFLALVYGILTIKVIIPKFGGKYIYSSLYTKFSIDR 247
Query: 250 RKLLYFIVFNASFGFLTFLSSKGLVSVALPWLESMLSSRDTQTMIGFHYPYMLLPLSYLV 309
RKLLYF++FN +F L L G++S+ PWLE +L+SR+TQTM GFHYPYML+PLS++
Sbjct: 248 RKLLYFLLFNLTFALLPMLDFIGMLSLIPPWLECLLASRETQTMFGFHYPYMLVPLSFVA 307
Query: 310 AIEGFKKSK-KVAVSLIVAGILTSMATIPITFKPPKAENPLIHFAVLKPIPGKDASWEAI 368
++E ++ K ++ L++ GIL S+AT+PI PP+ NPLI+ V+ P+PGK+ASWEAI
Sbjct: 308 SLEVARQLKWRIVKKLVIIGILASLATLPIAKLPPEKPNPLIYLTVITPVPGKEASWEAI 367
Query: 369 TIVKTLEGPIYTQPEFYPHLSTRIDVYVYPKGIKPRVILVNLNTWNGKRAIKRLKDFRIK 428
IVK L+GPIYTQPEFYP L+ R DVY+YPK + PRVILVNLNT+ G+RA+KRL+DF+++
Sbjct: 368 EIVKGLKGPIYTQPEFYPPLAIRSDVYIYPKNVNPRVILVNLNTYYGRRALKRLRDFKVE 427
Query: 429 LEEYKTVFKKDGVVIFIRK 447
L YK +F+KDGV+I +RK
Sbjct: 428 LTRYKKIFEKDGVIIMLRK 446
>pir||H71055 hypothetical protein PH1142 - Pyrococcus horikoshii
>gi|3257559|dbj|BAA30242.1| (AP000005) 453aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 453
Score = 187 bits (470), Expect = 2e-46
Identities = 127/414 (30%), Positives = 213/414 (50%), Gaps = 22/414 (5%)
Query: 1 MKSLIDKKLLVIIFIAYTFIIFKTCLVLYENFSYKSLDLGIFSQSLYSTLNGKFMYNTVE 60
M+ + K L ++FI Y + ++ F ++ D GI+ QSL++ GK YNT E
Sbjct: 1 MREIRIPKALTLLFIVYMVVFGSYSVLKCLTFRIQAYDTGIYMQSLWTAAEGKLFYNTPE 60
Query: 61 AQLYS----APNHFAVHFQPILLLLLPVYAIMPSPVVLLLIQAIFLALSATLALLIACEE 116
AQ + +HF VHFQPIL L+P+Y + P P LLL++ + +A++ +A E
Sbjct: 61 AQGLGWELPSSSHFGVHFQPILFFLIPIYKLFPYPETLLLLETLAMAIAIFPLYALAYEI 120
Query: 117 LN-HREAILVASLYIFNSSLLGIALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLI 175
LN R+++L++ LY+ N ++ GI ++FHPV+ A+P F+ +G+ K +L S+L+
Sbjct: 121 LNDERKSLLISLLYLMNPAIHGINRYDFHPVAFAIPPIFLLMYYWVKGEYKKGFLISILV 180
Query: 176 LLTKEDSFLGVVSLSLWKILMDGLNPE---SFRKNRGLILLSIASMMYGIIVIKVVIPHL 232
LL KED+ L ++SL + L + N ++N I L + M++ + + V+IP
Sbjct: 181 LLVKEDAGLILISLGIAFTLQNIANVNFLGIIKRNIKNINLMLLGMLWITLSVFVIIPFF 240
Query: 233 G---MGYIYESLYSEFELTRRKLLYFIVFN-ASFGFLTFLSSKGLVSVALPWLESMLSSR 288
G Y + SL F L+ I N +F FL L K L++ WLE +LS
Sbjct: 241 GKHSYSYHFYSLQVHFP---NLALWMITINLMAFAFLPLLKPKLLLATLPLWLELILSPM 297
Query: 289 DTQTMIGFHYPYMLLPLSYLVAIEGFKK---SKKVAVSLIVAGILTSMATIPITFKPPKA 345
IG+HYPYML+P+ L++I K+ S K+ + + ++ ++ I ++ P A
Sbjct: 298 YGMVKIGYHYPYMLVPMLALISIYALKEVNISSKIILGISLSSMVLFSPLINLSNSPDVA 357
Query: 346 ENPLIHFAVLKPIPGKD---ASWEAITIVKTLEGPIYTQPEFYPHLSTRIDVYV 396
H V I K+ + I K +G + Q +P+L++ +VY+
Sbjct: 358 -GARYHQLVKDYIENKEKYKCLLQEIQKYKDFKGKLVVQDRIFPYLASNENVYL 410
>pir||S77226 hypothetical protein sll1352 - Synechocystis sp. (strain PCC 6803)
>gi|1652640|dbj|BAA17560.1| (D90907) hypothetical
protein [Synechocystis sp.]
Length = 472
Score = 75.3 bits (182), Expect = 1e-12
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 13/212 (6%)
Query: 20 IIFKTCLVLYENFSYKSLDLGIFSQSLYSTLNGKFMYNTVEAQLYSAPNHFAVHFQPILL 79
I+F V + F +LDLG F Q++Y G++ + + +H A PI +
Sbjct: 27 ILFICATVRHWLFQSTALDLGFFDQAIYLISQGEYPRVSFRG-FHILGDHAAFLVYPIAI 85
Query: 80 LLLPVYAIMPSPVVLLLIQAIFLALSATLALLIACEE-LNHREAILVASLYIFNSSLLGI 138
Y I PS L LIQAI LAL A +A + L +E++ +A +Y + I
Sbjct: 86 F----YKIYPSVYWLFLIQAIALALGAWPTWQLAKQTGLGEKESLTMALVYGLYPLIFNI 141
Query: 139 ALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLILLTKEDSFLGVVSLSLWKILMDG 198
LF+FH +AVP A + K +F ++ V IL +K L V L +W ++ +
Sbjct: 142 NLFDFHTEVIAVPALLWAVWSARANKWGIFLISLVTILASKAVLSLTVFMLGIWLLIWE- 200
Query: 199 LNPESFRKNRGLILLSIASMMYGIIVIKVVIP 230
RK ++ ++A + + II K +IP
Sbjct: 201 ------RKRLMGLITTVAGIAWFIITTKGIIP 226
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.144 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154468386
Number of Sequences: 2977
Number of extensions: 6322244
Number of successful extensions: 20583
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20570
Number of HSP's gapped (non-prelim): 4
length of query: 448
length of database: 189,106,746
effective HSP length: 54
effective length of query: 394
effective length of database: 156,788,448
effective search space: 61774648512
effective search space used: 61774648512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)