BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1991 (phnP) DE:ATP-BINDING PROTEIN PHNP (PHNP)
(249 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75174 ATP-binding protein phnp (phnp) PAB1991 - Pyrococcus... 518 e-146
pir||G71039 probable PHNP protein - Pyrococcus horikoshii >gi|32... 432 e-120
gi|11498089 ATP-binding protein PhnP (phnP) [Archaeoglobus fulgi... 103 2e-21
sp|P16692|PHNP_ECOLI PHNP PROTEIN >gi|96286|pir||H35719 phnP pro... 101 9e-21
pir||F83223 conserved hypothetical protein PA3372 [imported] - P... 88 9e-17
pir||E71450 hypothetical protein PH0260 - Pyrococcus horikoshii ... 85 1e-15
pir||D70166 phnP protein (phnP) homolog - Lyme disease spirochet... 82 5e-15
pir||E71649 hypothetical protein RP869 - Rickettsia prowazekii >... 69 7e-11
>pir||H75174 ATP-binding protein phnp (phnp) PAB1991 - Pyrococcus abyssi
(strain Orsay) >gi|5457989|emb|CAB49479.1| (AJ248284)
ATP-BINDING PROTEIN PHNP (PHNP) [Pyrococcus abyssi]
Length = 249
Score = 518 bits (1319), Expect = e-146
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIRE 60
MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIRE
Sbjct: 1 MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIRE 60
Query: 61 FLNTPIDAIFLTHWHHDHIYGLYKLRWIARETELYAPRGHADALILQDPKNLKPNIIRAG 120
FLNTPIDAIFLTHWHHDHIYGLYKLRWIARETELYAPRGHADALILQDPKNLKPNIIRAG
Sbjct: 61 FLNTPIDAIFLTHWHHDHIYGLYKLRWIARETELYAPRGHADALILQDPKNLKPNIIRAG 120
Query: 121 DKIKINGLKITAVKLNHQVETLGYIIEENGKNVAVLYDTKGLPRETEIILEKLSPLRLAI 180
DKIKINGLKITAVKLNHQVETLGYIIEENGKNVAVLYDTKGLPRETEIILEKLSPLRLAI
Sbjct: 121 DKIKINGLKITAVKLNHQVETLGYIIEENGKNVAVLYDTKGLPRETEIILEKLSPLRLAI 180
Query: 181 VDATYPPGFNDPYHNNVDEAGEMGIKYAERVVLSHISHKNLPFLELVNYVRRKWDDRVLV 240
VDATYPPGFNDPYHNNVDEAGEMGIKYAERVVLSHISHKNLPFLELVNYVRRKWDDRVLV
Sbjct: 181 VDATYPPGFNDPYHNNVDEAGEMGIKYAERVVLSHISHKNLPFLELVNYVRRKWDDRVLV 240
Query: 241 AYDGMVFYV 249
AYDGMVFYV
Sbjct: 241 AYDGMVFYV 249
>pir||G71039 probable PHNP protein - Pyrococcus horikoshii
>gi|3258036|dbj|BAA30719.1| (AP000006) 249aa long
hypothetical PHNP protein [Pyrococcus horikoshii]
Length = 249
Score = 432 bits (1099), Expect = e-120
Identities = 200/249 (80%), Positives = 223/249 (89%)
Query: 1 MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIRE 60
MI+YFIGTGGSEGIPVHLC+C +CNEARKF FAQRRPSTLA+IG GEV+L DVGTDIRE
Sbjct: 1 MIIYFIGTGGSEGIPVHLCDCNTCNEARKFRFAQRRPSTLAVIGENGEVILFDVGTDIRE 60
Query: 61 FLNTPIDAIFLTHWHHDHIYGLYKLRWIARETELYAPRGHADALILQDPKNLKPNIIRAG 120
FLN P+DAIFLTHWHHDHIYGLYKLRWIARET LYAP GHADALILQDPKNL+P II+AG
Sbjct: 61 FLNVPLDAIFLTHWHHDHIYGLYKLRWIARETNLYAPEGHADALILQDPKNLRPKIIKAG 120
Query: 121 DKIKINGLKITAVKLNHQVETLGYIIEENGKNVAVLYDTKGLPRETEIILEKLSPLRLAI 180
+KI+I +K+T+VKLNHQ+ETLGYIIEE+GK VA+LYDTKGLP ET LE +SPLR+AI
Sbjct: 121 EKIRIGDIKVTSVKLNHQIETLGYIIEEDGKRVAILYDTKGLPPETREYLEDISPLRVAI 180
Query: 181 VDATYPPGFNDPYHNNVDEAGEMGIKYAERVVLSHISHKNLPFLELVNYVRRKWDDRVLV 240
VDATYPPGF DPYHNNV+EA EM I AER+VLSHISHKNLPFL+LVNY R+ W +VLV
Sbjct: 181 VDATYPPGFVDPYHNNVNEAVEMSIDIAERIVLSHISHKNLPFLKLVNYTRKMWGGKVLV 240
Query: 241 AYDGMVFYV 249
AYDGMVFYV
Sbjct: 241 AYDGMVFYV 249
>gi|11498089 ATP-binding protein PhnP (phnP) [Archaeoglobus fulgidus]
>gi|7482914|pir||F69309 ATP-binding protein PhnP (phnP)
homolog - Archaeoglobus fulgidus
>gi|2650153|gb|AAB90764.1| (AE001071) ATP-binding
protein PhnP (phnP) [Archaeoglobus fulgidus]
Length = 254
Score = 103 bits (254), Expect = 2e-21
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 1 MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIRE 60
MIV +GTG S G P+ C+CR+C +AR+ G+ ++R S + + N G+ VLID D+R
Sbjct: 1 MIVTLLGTGDSPGTPILNCHCRTCEDARRKGWERKRFSVM--VQNNGKTVLIDTSPDLRR 58
Query: 61 FL----NTPIDAIFLTHWHHDHIYGLYKLRWIARETELYA-PRGHADALILQDPKNLKPN 115
L +DA+ TH H DH G + + ++Y+ P+ H D + KP
Sbjct: 59 QLLDCGVEKVDAVIWTHCHFDHFGGFGEFYRVQNNVKVYSTPQIHEDIGHFMKFMSYKPV 118
Query: 116 IIRAGDKIKINGLKITAVKLNH-QVETLGYIIEENGKNVAVLYDTKGLPRETEIILEKLS 174
+ A + I G+ T + +NH V +G +E G V V DT R E L ++
Sbjct: 119 EVEAFENFTIAGMDFTLLPVNHPPVSAVGVKVEWKGYKVVVSGDTN--VRIPEATLREMQ 176
Query: 175 PLRLAIVDATYPPGFNDPYHNNVDEAGEMGIKY-AERVVLSHISH 218
L IV+A P G H N EA E+ + A +VVL+H+ H
Sbjct: 177 NPDLLIVEALAPTG-RFRKHMNAKEALELAKRLNAGKVVLTHLGH 220
>sp|P16692|PHNP_ECOLI PHNP PROTEIN >gi|96286|pir||H35719 phnP protein - Escherichia coli
>gi|147213|gb|AAA24356.1| (J05260) phnP protein
[Escherichia coli] >gi|216605|dbj|BAA14276.1| (D90227)
phnP [Escherichia coli] >gi|536936|gb|AAA96991.1|
(U14003) phnP gene product [Escherichia coli]
>gi|1790530|gb|AAC77053.1| (AE000482) phosphonate
metabolism [Escherichia coli K12]
Length = 252
Score = 101 bits (249), Expect = 9e-21
Identities = 69/226 (30%), Positives = 113/226 (49%), Gaps = 21/226 (9%)
Query: 7 GTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIREFLNTP- 65
GTGG++G+P C C +C AR+ +R+P + ++ + LID G +P
Sbjct: 9 GTGGAQGVPAWGCECAACARARRSPQYRRQPCS-GVVKFNDAITLIDAGLHDLADRWSPG 67
Query: 66 -IDAIFLTHWHHDHIYGLYKLRW-IARETELYAP---RGHADAL----ILQDPKNLKPNI 116
LTH+H DH+ GL+ LRW + +Y P +G D +L ++P +
Sbjct: 68 SFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFSHTVEPFV 127
Query: 117 IRAGDKIKINGLKITAVKLNHQVETLGYIIEENGKNVAVLYDTKGLPRETEIILEKLSPL 176
+ + GL++T + LNH T GY++E VA L DT GLP +T L P
Sbjct: 128 V-----FDLQGLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTLKFLRNNQP- 181
Query: 177 RLAIVDATYPPGFNDPYHNNVDEAGEMGIKY---AERVVLSHISHK 219
++ ++D ++PP + P N+ D + + + RV+L+HISH+
Sbjct: 182 QVMVMDCSHPPRADAP-RNHCDLNTVLALNQVIRSPRVILTHISHQ 226
>pir||F83223 conserved hypothetical protein PA3372 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949507|gb|AAG06760.1|AE004759_7 (AE004759)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 256
Score = 88.2 bits (215), Expect = 9e-17
Identities = 78/233 (33%), Positives = 115/233 (48%), Gaps = 20/233 (8%)
Query: 1 MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVG-TDIR 59
M + +GTG + +PV+ C+C +C AR +RRP + A++ G+ LID G D+
Sbjct: 1 MRLTLLGTGDARQVPVYGCDCPACRNARADAGLRRRPCS-ALLECAGQRWLIDSGLVDLC 59
Query: 60 E-FLNTPIDAIFLTHWHHDHIYGLYKLRWIARETELYAPRGHADALILQDPKNLKPNII- 117
E F +D I TH+H DH GL LRW + + G AD L D P I+
Sbjct: 60 ERFPPHSLDGILQTHYHADHAQGLLHLRW--GQGLVIPVHGPADPEGLADLYK-HPGILD 116
Query: 118 -----RAGDKIKINGLKITAVKLNHQVETLGYIIE---ENG--KNVAVLYDTKGLPRETE 167
A ++ + L TA+ L H T GY++E E G + +A L DT GLP ++
Sbjct: 117 FSQPFGAFERRQWGALAATALPLVHSKPTFGYLLEGASEEGTIRRLAYLTDTVGLPADSA 176
Query: 168 IILEKLSPLRLAIVDATYPPGFNDP-YHNNVDEAGE-MGIKYAERVVLSHISH 218
L +PL L ++D + PP P HN++ A E + R VL+H+ H
Sbjct: 177 SRL-LAAPLDLLVLDCSMPPQERPPRNHNDLTRALECIESLRPRRAVLTHVGH 228
>pir||E71450 hypothetical protein PH0260 - Pyrococcus horikoshii
>gi|3256649|dbj|BAA29332.1| (AP000001) 257aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 257
Score = 84.7 bits (206), Expect = 1e-15
Identities = 71/240 (29%), Positives = 116/240 (47%), Gaps = 27/240 (11%)
Query: 1 MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIR- 59
M V +G+G G P LC C +C AR +R ++ I G +LID G D+
Sbjct: 1 MKVIILGSGSYSGTPKPLCTCENCTRARINPAFRRTRFSVYIEGG----ILIDPGPDLHY 56
Query: 60 --EFLNTPIDAIFLTHWHHDHIYGLYKLRWIARETELYAPRG------------HADALI 105
E LN ++ I +TH H DHI+GL + + T P G +++A +
Sbjct: 57 HLEKLNKEVETILITHAHFDHIFGLPDAQVFKKLTIASNPLGIKVARSLAMLAFNSEAPL 116
Query: 106 LQDPKNLKPNIIRAGDKIKINGLKITAVKLNHQVETL-GYIIEENGKNVAVLYDT-KGLP 163
D ++ ++ ++ K+NG+K+ + H +E G++IE K VA+ DT +
Sbjct: 117 GNDWDYVE---LKFWNEYKVNGVKVIHFPVVHSIEMAGGFLIERKNKTVAITGDTGPEII 173
Query: 164 RETEIILEKLSPLRLAIVDATYPPGFNDPYHNNVDEAGEMG-IKYAERVVLSHISHKNLP 222
R++E+I + + L I + T+ H V++A E+ I AE+ V +HISH N P
Sbjct: 174 RDSEVI-DLIKGSDLLISEMTHKESI-PKTHLGVNDAIELAKIVKAEQTVFAHISHSNYP 231
>pir||D70166 phnP protein (phnP) homolog - Lyme disease spirochete
>gi|2688455|gb|AAC66903.1| (AE001155) phnP protein
(phnP) [Borrelia burgdorferi]
Length = 253
Score = 82.3 bits (200), Expect = 5e-15
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 36/269 (13%)
Query: 1 MIVYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIRE 60
M+ F+GTG S G+P+ C+C+ C + + +R S+ + + G +LID G DIR+
Sbjct: 1 MVGTFLGTGASSGVPMLNCSCKVCTSS--YSKNKRLRSSFFLESSSGIKLLIDTGPDIRQ 58
Query: 61 FLNTP----IDAIFLTHWHHDHIYGLYKLRWIAR--ETELYA------------PRGHAD 102
L +D + TH H+DHI G +++ R +YA P
Sbjct: 59 QLLREKIDRLDLVLYTHEHYDHIMGFDDIKFYTRCAPLNIYARDTAMAHIRNAFPYNFTS 118
Query: 103 ALILQDPKNLKPNIIRAGDKIKINGLKITAVKLNH-QVETLGYIIEENGKNVAVLYDTKG 161
L ++ N+IR + LKI + L H + +LGY + N+A L D K
Sbjct: 119 KPSLSGKADIIANVIRDFEPFFFKSLKIVPIPLIHGDIISLGYRV----GNLAYLTDVKF 174
Query: 162 LPRETEIILEKLSPLRLAIVDATYPPGFNDPYHNNVDEAGEMGIKYAERV-VLSHISHKN 220
+P E + L L L I+DA P H N EA + K ++ +HI+H
Sbjct: 175 IP---EASYDYLKNLDLLIIDAMRIK--PHPAHLNFSEAFCVIKKINPKISYFTHIAHDI 229
Query: 221 LPFLELVNYVRRKWDDRVLVAYDGMVFYV 249
+ E +Y+ + D + +AYDG+ Y+
Sbjct: 230 MH--EEFDYLEK---DNIYLAYDGLKIYI 253
>pir||E71649 hypothetical protein RP869 - Rickettsia prowazekii
>gi|3861394|emb|CAA15293.1| (AJ235273) unknown
[Rickettsia prowazekii]
Length = 249
Score = 68.7 bits (165), Expect = 7e-11
Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 33/263 (12%)
Query: 3 VYFIGTGGSEGIPVHLCNCRSCNEARKFGFAQRRPSTLAIIGNKGEVVLIDVGTDIREFL 62
V +G G S G+PV C C +C K+ +R + I ++ +L+D G DIR L
Sbjct: 4 VTVLGCGASIGVPVIGCECSTCTSPSKY---NKRTRSAIYINDENSQILVDFGFDIRNQL 60
Query: 63 ----NTPIDAIFLTHWHHDHIYGLYKLRWIA----RETELYAPRGHADAL------ILQD 108
+D LTH H DH+ G+ LR + E+Y L +
Sbjct: 61 LREKINKLDCAILTHGHSDHVNGIDDLRVFTFMQDKPFEIYTDYNSVAQLHAKFDYLFNL 120
Query: 109 PKNLKPNIIRAGDKIKINGLKITAVKLNH-QVETLGYIIEENGKNVAVLYDTKGLPRETE 167
K L I DKIKIN +++ + +H +++LG I + D G P E+E
Sbjct: 121 CKLLATKSINFFDKIKINTIEVQFFRQHHGPIDSLGLRIGD----FVYSPDVIGFPPESE 176
Query: 168 IILEKLSPLRLAIVDATYPPGFNDPYHNNVDEAGEMGIKY-AERVVLSHISHKNLPFLEL 226
L+ + L +D ++P H +D+ KY E ++L+++ H + + E
Sbjct: 177 KFLKDIKIWILDCMDYR-----SNPNHAGLDKVLAWREKYNPEEILLTNMRH-TIDYHE- 229
Query: 227 VNYVRRKWDDRVLVAYDGMVFYV 249
+++ + V YDG F V
Sbjct: 230 ---IKKVLPNNVKPLYDGYKFMV 249
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.435
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100897886
Number of Sequences: 2977
Number of extensions: 4365428
Number of successful extensions: 9768
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9748
Number of HSP's gapped (non-prelim): 8
length of query: 249
length of database: 189,106,746
effective HSP length: 51
effective length of query: 198
effective length of database: 158,583,909
effective search space: 31399613982
effective search space used: 31399613982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)