BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1992 (PAB1992) DE:Hypothetical protein
         (260 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75174 hypothetical protein PAB1992 - Pyrococcus abyssi (st...   539  e-152
pir||H71039 hypothetical protein PH1608 - Pyrococcus horikoshii ...   468  e-131
pir||G64426 hypothetical protein MJ1016 - Methanococcus jannasch...   116  2e-25

>pir||G75174 hypothetical protein PAB1992 - Pyrococcus abyssi (strain Orsay)
           >gi|5457988|emb|CAB49478.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 260
           
 Score =  539 bits (1374), Expect = e-152
 Identities = 260/260 (100%), Positives = 260/260 (100%)

Query: 1   MLKDAIREIRRFGEETGIIEKKVLLLFSGGKDSSLALYILKEAGYDVSALTFFHKWSWPE 60
           MLKDAIREIRRFGEETGIIEKKVLLLFSGGKDSSLALYILKEAGYDVSALTFFHKWSWPE
Sbjct: 1   MLKDAIREIRRFGEETGIIEKKVLLLFSGGKDSSLALYILKEAGYDVSALTFFHKWSWPE 60

Query: 61  VIKWGMKFTKSLGVEHYLVDLTEGLRRVSIGRKGPICVHCKKIMLWNAKWFALNNGFEIL 120
           VIKWGMKFTKSLGVEHYLVDLTEGLRRVSIGRKGPICVHCKKIMLWNAKWFALNNGFEIL
Sbjct: 61  VIKWGMKFTKSLGVEHYLVDLTEGLRRVSIGRKGPICVHCKKIMLWNAKWFALNNGFEIL 120

Query: 121 AKGDNANDKIVGTLLDQCPGDIRLCEIPKIGIPIFRPLIKYKAIEVEEMAKEARIEPYRM 180
           AKGDNANDKIVGTLLDQCPGDIRLCEIPKIGIPIFRPLIKYKAIEVEEMAKEARIEPYRM
Sbjct: 121 AKGDNANDKIVGTLLDQCPGDIRLCEIPKIGIPIFRPLIKYKAIEVEEMAKEARIEPYRM 180

Query: 181 YEHGRRKQWREGCPLQYIDEDARITEELMDLAFRINYEVSKIARKFKVRVSVRVPSFEVM 240
           YEHGRRKQWREGCPLQYIDEDARITEELMDLAFRINYEVSKIARKFKVRVSVRVPSFEVM
Sbjct: 181 YEHGRRKQWREGCPLQYIDEDARITEELMDLAFRINYEVSKIARKFKVRVSVRVPSFEVM 240

Query: 241 CWNCNEKVLEEVKSIVNRET 260
           CWNCNEKVLEEVKSIVNRET
Sbjct: 241 CWNCNEKVLEEVKSIVNRET 260


>pir||H71039 hypothetical protein PH1608 - Pyrococcus horikoshii
           >gi|3258037|dbj|BAA30720.1| (AP000006) 295aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 295
           
 Score =  468 bits (1192), Expect = e-131
 Identities = 207/260 (79%), Positives = 243/260 (92%)

Query: 1   MLKDAIREIRRFGEETGIIEKKVLLLFSGGKDSSLALYILKEAGYDVSALTFFHKWSWPE 60
           ML + IRE++RFGEET II K+++L+FSGGKDSSLALY+LKEAGY+VSALTFFHKWSWPE
Sbjct: 35  MLNNVIRELKRFGEETKIINKRIILMFSGGKDSSLALYLLKEAGYNVSALTFFHKWSWPE 94

Query: 61  VIKWGMKFTKSLGVEHYLVDLTEGLRRVSIGRKGPICVHCKKIMLWNAKWFALNNGFEIL 120
           V++WGMKFTK LGV HYL+D+TEGL+R +IGRKGPIC+HCKK+MLWNAKWFA+NNGFE++
Sbjct: 95  VLRWGMKFTKKLGVTHYLIDITEGLKREAIGRKGPICIHCKKVMLWNAKWFAVNNGFELI 154

Query: 121 AKGDNANDKIVGTLLDQCPGDIRLCEIPKIGIPIFRPLIKYKAIEVEEMAKEARIEPYRM 180
           AKGDNANDKI+GTLLDQCPGDIR+CEIPKIGIPIFRPLIKYKA E+E +  EA I+PYRM
Sbjct: 155 AKGDNANDKIIGTLLDQCPGDIRICEIPKIGIPIFRPLIKYKAREIEMLTNEAGIKPYRM 214

Query: 181 YEHGRRKQWREGCPLQYIDEDARITEELMDLAFRINYEVSKIARKFKVRVSVRVPSFEVM 240
           YEHGRRKQWREGCPLQYIDED RITEELMDLAFR+NY+VSKIAR+ KVR+SVRVPSFE+M
Sbjct: 215 YEHGRRKQWREGCPLQYIDEDTRITEELMDLAFRVNYKVSKIARERKVRISVRVPSFEIM 274

Query: 241 CWNCNEKVLEEVKSIVNRET 260
           CWNC+ + L+EVK ++N+ET
Sbjct: 275 CWNCDNETLKEVKKVINKET 294


>pir||G64426 hypothetical protein MJ1016 - Methanococcus jannaschii
           >gi|1499857|gb|AAB99022.1| (U67544) M. jannaschii
           predicted coding region MJ1016 [Methanococcus
           jannaschii]
           Length = 294
           
 Score =  116 bits (289), Expect = 2e-25
 Identities = 76/257 (29%), Positives = 135/257 (51%), Gaps = 18/257 (7%)

Query: 2   LKDAIREIRRFGEETGIIEKKVLLLFSGGKDSSLALYILKEAGYDVSALT-FFHKWSWPE 60
           L++  R+I    +E   +++ ++++ SGGKDSS A+ + K+ G ++  L  F+H+WSW  
Sbjct: 16  LEELKRDIIEQFKEKNALDEGIVVMASGGKDSSTAIALAKDLGLNIEYLIHFYHRWSWDV 75

Query: 61  VIKWGMKFTKSLGVEHYLVDLTEGLRRVSIGRKGP-ICVHCKKIMLWNAKWFALNNGFEI 119
             K   K +K   +     ++T+ L + + G KG  IC  CK IM   A   +   G  I
Sbjct: 76  SKKMVEKLSKKFDIPVIFYNITDELLKRTKGAKGSSICRICKNIMKDKAVDISKEKGIRI 135

Query: 120 LAKGDNANDKIVGTLLDQCP---GDIRLCEIPKIGIP------------IFRPLIKYKAI 164
           +  GD+A +K+ G +++      G++   ++    +P             FRPLI+    
Sbjct: 136 IMTGDSALEKVSGAVMNYLRDVYGEVVYNKMELTPVPQKYSKGKDKEVLFFRPLIRLACE 195

Query: 165 EVEEMAKEARIEPYRMYEHGRRKQ-WREGCPLQYIDEDARITEELMDLAFRINYEVSKIA 223
           +V ++     IE  R +E G +   WREGC LQY DE+A + E+L +  ++ N   +++A
Sbjct: 196 DVLKLMDYYNIEIERAHEVGDKIGFWREGCCLQYADENALLNEKLFNELYKYNKIATEVA 255

Query: 224 RKFKVRVSVRVPSFEVM 240
           +K   R S+++PS ++M
Sbjct: 256 KKHGFRASIKLPSKKIM 272


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.141    0.435 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97673469
Number of Sequences: 2977
Number of extensions: 4109099
Number of successful extensions: 8632
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8626
Number of HSP's gapped (non-prelim): 3
length of query: 260
length of database: 189,106,746
effective HSP length: 51
effective length of query: 209
effective length of database: 158,583,909
effective search space: 33144036981
effective search space used: 33144036981
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)