BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1994 (PAB1994) DE:Hypothetical protein
         (128 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75174 hypothetical protein PAB1994 - Pyrococcus abyssi (st...   264  3e-70
pir||D71040 hypothetical protein PH1612 - Pyrococcus horikoshii ...   235  2e-61
pir||F69197 conserved hypothetical protein MTH730 - Methanobacte...    76  1e-13
sp|Q58359|Y949_METJA HYPOTHETICAL PROTEIN MJ0949 >gi|2128594|pir...    76  2e-13

>pir||E75174 hypothetical protein PAB1994 - Pyrococcus abyssi (strain Orsay)
           >gi|5457986|emb|CAB49476.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 128
           
 Score =  264 bits (668), Expect = 3e-70
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MLNTIVLIRTDNFDKALTALSDLVRYGGMKIRGKPRIIPPALSDWAFEQIVGEKPRKKVR 60
           MLNTIVLIRTDNFDKALTALSDLVRYGGMKIRGKPRIIPPALSDWAFEQIVGEKPRKKVR
Sbjct: 1   MLNTIVLIRTDNFDKALTALSDLVRYGGMKIRGKPRIIPPALSDWAFEQIVGEKPRKKVR 60

Query: 61  AHVVAQVDLPASKAIGRIRDIHPPAHIVVIPVGTHVHKEILRLWGTFKELKGFHPPKEIK 120
           AHVVAQVDLPASKAIGRIRDIHPPAHIVVIPVGTHVHKEILRLWGTFKELKGFHPPKEIK
Sbjct: 61  AHVVAQVDLPASKAIGRIRDIHPPAHIVVIPVGTHVHKEILRLWGTFKELKGFHPPKEIK 120

Query: 121 RPGEELEE 128
           RPGEELEE
Sbjct: 121 RPGEELEE 128


>pir||D71040 hypothetical protein PH1612 - Pyrococcus horikoshii
           >gi|3258041|dbj|BAA30724.1| (AP000006) 128aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 128
           
 Score =  235 bits (593), Expect = 2e-61
 Identities = 112/125 (89%), Positives = 119/125 (94%)

Query: 1   MLNTIVLIRTDNFDKALTALSDLVRYGGMKIRGKPRIIPPALSDWAFEQIVGEKPRKKVR 60
           MLNTIVLIRTDNF KALTAL+DLVRYGGMKIRG PRIIPPALSDWAFEQIVGEKPRK+V+
Sbjct: 1   MLNTIVLIRTDNFKKALTALADLVRYGGMKIRGTPRIIPPALSDWAFEQIVGEKPRKRVK 60

Query: 61  AHVVAQVDLPASKAIGRIRDIHPPAHIVVIPVGTHVHKEILRLWGTFKELKGFHPPKEIK 120
           AHVVAQVDLPASKAIGRIRDIHPPAHI+VIPVG+ VHKE+LRLWGTFKELKGFHPPKE K
Sbjct: 61  AHVVAQVDLPASKAIGRIRDIHPPAHIIVIPVGSPVHKELLRLWGTFKELKGFHPPKETK 120

Query: 121 RPGEE 125
           R  E+
Sbjct: 121 RTSED 125


>pir||F69197 conserved hypothetical protein MTH730 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621819|gb|AAB85235.1| (AE000852) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 116
           
 Score = 76.5 bits (185), Expect = 1e-13
 Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 4   TIVLIRTDNFDKALTALSDLVRYGGMKIRGKPRIIPPALSDWAFEQIVGEKPRKKVRAHV 63
           +++++R D+  K L A++DL R+ G+K+RGKPRI+   ++D     I+GE  R K     
Sbjct: 2   SLIILRADSRKKILNAIADLERHAGLKVRGKPRILRNDIADRMASSILGEL-RMKSSVAA 60

Query: 64  VAQVDLPASKAIGRIRDIHPPAHIVVIPVGTHVHKEILRLWGTFKELKGFHPPK 117
             +V+   +++I  IR IHPPAH++V+      + ++  ++G  + L+G++  K
Sbjct: 61  AVEVEEDDTRSIMAIRRIHPPAHVIVVSSEYDEYNDLREMFGGLRVLRGYYSHK 114


>sp|Q58359|Y949_METJA HYPOTHETICAL PROTEIN MJ0949 >gi|2128594|pir||E64418 conserved
           hypothetical protein MJ0949 - Methanococcus jannaschii
           >gi|1591616|gb|AAB98950.1| (U67538) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 123
           
 Score = 75.7 bits (183), Expect = 2e-13
 Identities = 46/116 (39%), Positives = 70/116 (59%), Gaps = 2/116 (1%)

Query: 4   TIVLIRTDNFDKALTALSDLVRYGGMKIRGKPRIIPPALSDWAFEQIVGEKPRKKVRAHV 63
           TI+LIR D+++K   AL+D+ R+  + I GKP+II P  +D     I+GE  +K  +   
Sbjct: 2   TILLIRGDSYEKLKNALADVDRHAELTIIGKPKIIVPEAADEILSHILGE-VKKPCKTAC 60

Query: 64  VAQVDLPASKAIGRIRDIHPPAHIVVIPVG-THVHKEILRLWGTFKELKGFHPPKE 118
           +A++   A KAI RIR IHPPAHIVVI      ++ ++L  +     LKG++  K+
Sbjct: 61  LAKIAEKAPKAIDRIRKIHPPAHIVVISERYGDIYYKLLDDFPKLPVLKGYYKSKK 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.429 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51866926
Number of Sequences: 2977
Number of extensions: 1997427
Number of successful extensions: 4139
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4135
Number of HSP's gapped (non-prelim): 4
length of query: 128
length of database: 189,106,746
effective HSP length: 49
effective length of query: 79
effective length of database: 159,780,883
effective search space: 12622689757
effective search space used: 12622689757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)