BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1999 (PAB1999) DE:Hypothetical protein
(233 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75174 hypothetical protein PAB1999 - Pyrococcus abyssi (st... 486 e-137
pir||H71040 probable phosphoesterase (EC 3.1.-.-) PH1616 - Pyroc... 425 e-118
sp|Q58322|Y912_METJA HYPOTHETICAL PROTEIN MJ0912 >gi|2128575|pir... 168 6e-41
pir||G72200 conserved hypothetical protein - Thermotoga maritima... 160 1e-38
pir||D72587 hypothetical protein APE1169 - Aeropyrum pernix (str... 123 1e-27
gb|AAG20468.1| (AE005119) DNA repair protein; Rad24c [Halobacter... 119 3e-26
emb|CAC12118.1| (AL445066) conserved hypothetical protein [Therm... 113 2e-24
pir||E75287 conserved hypothetical protein - Deinococcus radiodu... 111 8e-24
pir||A75405 conserved hypothetical protein - Deinococcus radiodu... 105 6e-22
pir||A75073 hypothetical protein PAB1723 - Pyrococcus abyssi (st... 102 4e-21
pir||G71092 hypothetical protein PH1004 - Pyrococcus horikoshii ... 101 9e-21
dbj|BAB05578.1| (AP001513) unknown conserved protein in others [... 89 4e-17
pir||G75297 conserved hypothetical protein - Deinococcus radiodu... 74 1e-12
>pir||A75174 hypothetical protein PAB1999 - Pyrococcus abyssi (strain Orsay)
>gi|5457982|emb|CAB49472.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 233
Score = 486 bits (1238), Expect = e-137
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MISMPIALISDIHSNYEALRAVWKEIKDIEKVACMGDLVGYGASPNEVVEFIKREMEKGK 60
MISMPIALISDIHSNYEALRAVWKEIKDIEKVACMGDLVGYGASPNEVVEFIKREMEKGK
Sbjct: 1 MISMPIALISDIHSNYEALRAVWKEIKDIEKVACMGDLVGYGASPNEVVEFIKREMEKGK 60
Query: 61 VLCVRGNHDNAVAFGADWGFNPYARYAIRWQQRVLTVENLEFLRRLPVRQFFKLGNRSYH 120
VLCVRGNHDNAVAFGADWGFNPYARYAIRWQQRVLTVENLEFLRRLPVRQFFKLGNRSYH
Sbjct: 61 VLCVRGNHDNAVAFGADWGFNPYARYAIRWQQRVLTVENLEFLRRLPVRQFFKLGNRSYH 120
Query: 121 VIHGSPRAPLDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKGRRVINPGSVG 180
VIHGSPRAPLDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKGRRVINPGSVG
Sbjct: 121 VIHGSPRAPLDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKGRRVINPGSVG 180
Query: 181 QPRDGDWRASYAILYENGKIEFFRVEYDVEKAAEKILKAGLPEFLALRLFEGL 233
QPRDGDWRASYAILYENGKIEFFRVEYDVEKAAEKILKAGLPEFLALRLFEGL
Sbjct: 181 QPRDGDWRASYAILYENGKIEFFRVEYDVEKAAEKILKAGLPEFLALRLFEGL 233
>pir||H71040 probable phosphoesterase (EC 3.1.-.-) PH1616 - Pyrococcus
horikoshii >gi|3258045|dbj|BAA30728.1| (AP000006) 233aa
long hypothetical protein [Pyrococcus horikoshii]
Length = 233
Score = 425 bits (1082), Expect = e-118
Identities = 197/233 (84%), Positives = 214/233 (91%)
Query: 1 MISMPIALISDIHSNYEALRAVWKEIKDIEKVACMGDLVGYGASPNEVVEFIKREMEKGK 60
MISMPIALISDIHSNYEAL+AVWKEIKDI+K+ C+GDLVGYGASP+ VVE I++EM++ +
Sbjct: 1 MISMPIALISDIHSNYEALKAVWKEIKDIDKIVCLGDLVGYGASPDAVVELIRKEMKRRE 60
Query: 61 VLCVRGNHDNAVAFGADWGFNPYARYAIRWQQRVLTVENLEFLRRLPVRQFFKLGNRSYH 120
+LC+RGNHDNAVAFG DWGFNPYARYA+RW QR + ENLEFLR LPVR FFK G RSYH
Sbjct: 61 ILCIRGNHDNAVAFGTDWGFNPYARYAVRWHQRTMKSENLEFLRNLPVRLFFKYGERSYH 120
Query: 121 VIHGSPRAPLDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKGRRVINPGSVG 180
+IHGSPRAPLDEYLFPWLPDSEF DCLRYIREDDLIVGHTHVPMLK I RRVINPGSVG
Sbjct: 121 IIHGSPRAPLDEYLFPWLPDSEFADCLRYIREDDLIVGHTHVPMLKIIGKRRVINPGSVG 180
Query: 181 QPRDGDWRASYAILYENGKIEFFRVEYDVEKAAEKILKAGLPEFLALRLFEGL 233
QPRDGDWRASYAILYE+GK+EFFRVEYDVE AAEKILKAGLPEFLA RLFEGL
Sbjct: 181 QPRDGDWRASYAILYEDGKVEFFRVEYDVETAAEKILKAGLPEFLAYRLFEGL 233
>sp|Q58322|Y912_METJA HYPOTHETICAL PROTEIN MJ0912 >gi|2128575|pir||H64413 probable
phosphoesterase (EC 3.1.-.-) MJ0912 - Methanococcus
jannaschii >gi|1499745|gb|AAB98917.1| (U67535) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 243
Score = 168 bits (421), Expect = 6e-41
Identities = 111/252 (44%), Positives = 144/252 (57%), Gaps = 30/252 (11%)
Query: 1 MISMPIALISDIHSNYEALRAVWKEIKD--IEKVACMGDLVGYGASPNEVVEFIKREMEK 58
M+ IA+ISDIHSN EAL AV +IK+ I+K+ C+GD+VGYGA+PNE VE I R++
Sbjct: 1 MVKSMIAVISDIHSNLEALNAVLNDIKNRGIKKIFCLGDIVGYGANPNECVELI-RDLN- 58
Query: 59 GKVLCVRGNHDNAVAFGADWG-FNPYARYAIRWQQRVLTVENLEFLRRLPVRQFFKLGNR 117
L V GNHD V FN Y AI W ++V+ ENL+FL LP+ + +
Sbjct: 59 --CLSVVGNHDYGVLGKESLDYFNKYGAIAILWTKKVIKNENLKFLDSLPLIIEENIKGK 116
Query: 118 SYHVIHGSPRAP-LDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKG------ 170
H +P+ P + EYLFP D F D + VGH+H+P + +G
Sbjct: 117 KVIFSHANPKHPEIWEYLFPDYVDDVFN------YGDLIFVGHSHIPFVNSEEGNLLLHE 170
Query: 171 ---------RRVINPGSVGQPRDGDWRASYAILYENG-KIEFFRVEYDVEKAAEKILKAG 220
+ +INPGSVGQPRDG +ASY I E KIE RVEYD++KA EKI+K
Sbjct: 171 GKIYLDEDKKYLINPGSVGQPRDGINKASYCIFDEKDFKIEIVRVEYDIKKAYEKIVKNR 230
Query: 221 LPEFLALRLFEG 232
LPE+L RLF G
Sbjct: 231 LPEWLGERLFLG 242
>pir||G72200 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982462|gb|AAD36938.1|AE001824_7 (AE001824)
conserved hypothetical protein [Thermotoga maritima]
Length = 254
Score = 160 bits (401), Expect = 1e-38
Identities = 94/242 (38%), Positives = 141/242 (57%), Gaps = 17/242 (7%)
Query: 4 MPIALISDIHSNYEALRAVWKEI--KDIEKVACMGDLVGYGASPNEVVEFIKREMEKGKV 61
M +A D+H N+EAL+AV +++ K +++V C+GDLVGYG P VV+ I MEK +
Sbjct: 1 MRLAFFGDVHGNFEALKAVLEDMENKGVDEVFCLGDLVGYGPDPEAVVQTI---MEKN-I 56
Query: 62 LCVRGNHDNAVAFGADWGFNPYAR--------YAIRWQQRVLTVENLEFLRRLPVRQFFK 113
+ GN+D+AV + + YA +++W + + EFLR LP + F+
Sbjct: 57 KTIMGNYDDAVGYSKESCGCSYAPGRETEVGDISLKWSIENTSEKTREFLRNLPKKLSFE 116
Query: 114 LGNRSYHVIHGSPRAPLDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKGRRV 173
+ + ++HGSP L EY+ P P + + + E+ ++ GHTH+PM+K + G+ V
Sbjct: 117 VEGVRFLLVHGSPLNELLEYVKPNTPPDRLKKIVESVEENVVVNGHTHLPMVKWVMGKLV 176
Query: 174 INPGSVGQPRDGDWRASYAIL-YENGKIEF--FRVEYDVEKAAEKILKAGLPEFLALRLF 230
+NPGS G+P+DGD RASY I+ ENG + F RV YDV+ EKI + GLP LA L
Sbjct: 177 LNPGSAGRPKDGDPRASYMIVDVENGTVSFEIVRVRYDVKTTVEKIARNGLPVELATVLA 236
Query: 231 EG 232
G
Sbjct: 237 LG 238
>pir||D72587 hypothetical protein APE1169 - Aeropyrum pernix (strain K1)
>gi|5104840|dbj|BAA80154.1| (AP000061) 216aa long
hypothetical protein [Aeropyrum pernix]
Length = 216
Score = 123 bits (307), Expect = 1e-27
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 41 YGASPNEVVEFIKREMEKGKVLCVRGNHDNAVAFGADWGFNPYARYAIRW-----QQRVL 95
YG P EV++ ++ + VRGNHD+AV +G D + W QR+L
Sbjct: 3 YGPWPGEVIDVLRGLGAR----IVRGNHDHAVGYGVDCRCGEETHWLSVWFRENITQRLL 58
Query: 96 TVENLEFLRRLPVRQFFKLGNRSYHVIHGSPRAPLDEYLFPWLPDSEFEDCLR------- 148
+ FL +LP+ +L +HG PR PL YL+PW+ D LR
Sbjct: 59 GDGDRRFLAKLPL----ELRLDGVLAVHGCPRNPLYCYLYPWMGRESLLDGLRRPGVRLG 114
Query: 149 ----YIREDDLIVGHTHVPMLKEIKGRRVINPGSVGQPRDGDWRASYAIL-YENGKIEFF 203
+ E ++VGHTHV + GRRV+NPGS GQPRDGD RA YA+L E+G++E
Sbjct: 115 RQGAVVEEATVLVGHTHVQFHLTLDGRRVVNPGSAGQPRDGDPRAGYAMLDLESGRVELA 174
Query: 204 RVEYDVEKAAEKILKAGLPE 223
RVEY VE+ ++ + G+PE
Sbjct: 175 RVEYPVERVVRRLGEMGVPE 194
>gb|AAG20468.1| (AE005119) DNA repair protein; Rad24c [Halobacterium sp. NRC-1]
Length = 227
Score = 119 bits (296), Expect = 3e-26
Identities = 87/237 (36%), Positives = 121/237 (50%), Gaps = 19/237 (8%)
Query: 4 MPIALISDIHSNYEALRAVWKEIKDIEKVACMGDLVGYGASPNEVVEFIKREMEKGKVLC 63
M I ++SDIHSN AL AV ++ ++++ C GD+VGY P V+ ++ E+G V
Sbjct: 1 MRIGVVSDIHSNLVALEAVLADMPAVDQLVCAGDVVGYNPWPAACVDTLR---ERG-VPT 56
Query: 64 VRGNHDNAVAFGADWGFNPYARYAIRWQQRVLTVENLEFLRRLPVRQFFKLGNRSYHVIH 123
V GNHD VA G ++ N A+ I L ++ P Q +L + VIH
Sbjct: 57 VMGNHDRMVATGQNFQGNGMAQAGIEHAVEELHDVQRTWIENRPAEQ--RLADGRVRVIH 114
Query: 124 GSPRAPLDEYLFPWLPDSEFEDCLRYIREDD-------LIVGHTHVPMLKEIKGRRVINP 176
P D+Y +P EFE L DD LI+GHTHV + V+NP
Sbjct: 115 DHPEFR-DKYTYP----DEFEPSLLGRGTDDDTPIEDVLILGHTHVQHHETYAAGIVMNP 169
Query: 177 GSVGQPRDGDWRASYAIL-YENGKIEFFRVEYDVEKAAEKILKAGLPEFLALRLFEG 232
GSVGQPRD D RA+YA++ ++ + RVEYD++ + AGLP A RL G
Sbjct: 170 GSVGQPRDEDPRAAYAVVDVDDLSVTEHRVEYDIDAVQAAVSDAGLPARTADRLASG 226
>emb|CAC12118.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 231
Score = 113 bits (280), Expect = 2e-24
Identities = 74/217 (34%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 8 LISDIHSNYEALRAVWKEIKDIEKVACMGDLVGYGASPNEVVEFIKREMEKGKVLCVRGN 67
+ISD H+N L+ V + K +K+ GD V YG +P E ++ +K + + V GN
Sbjct: 3 IISDAHANIHPLKYVIQREK-FDKIVFCGDAVDYGPNPGETLDLLKENAD----VMVSGN 57
Query: 68 HDNAVAFGADWGFNPYARYAIRWQQRVLTVENL-----EFLRRLPVRQFFKLGNRSYHVI 122
HD A A+ D + + +T++ L FLR LP R ++ + V+
Sbjct: 58 HDYAAAYSVDCRCGEENHELSVFTRENITLKKLGKNDISFLRSLPNRMDMEIDGMKFQVM 117
Query: 123 HGSPRAPLDEYLFPWLPDSEFEDCLRY-IREDDLIVGHTHVPMLKEIKGRRVINPGSVGQ 181
HGSPR L Y++PW L + + +VGHTH L G VINPGS+GQ
Sbjct: 118 HGSPRDELYGYMYPWSVQDHLRSMLGSPLDPANYVVGHTHYQFLIRYAGNLVINPGSIGQ 177
Query: 182 PRDGDWRASYAILYENGK--IEFFRVEYDVEKAAEKI 216
PRD SYA+ Y++ + +EF R +YD K E I
Sbjct: 178 PRDNP-MPSYAV-YDSSRNSVEFPRFDYDRSKLKEDI 212
>pir||E75287 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460142|gb|AAF11877.1|AE002064_8 (AE002064)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 253
Score = 111 bits (275), Expect = 8e-24
Identities = 94/267 (35%), Positives = 132/267 (49%), Gaps = 50/267 (18%)
Query: 1 MISMPIALISDIHSNYEALRAVWK--EIKDIEKVACMGDLVGYGASPNEVVEFIKREMEK 58
M + + L+SDIH+N AL+AV + E + +++ +GD +GYG P++V+E ++ K
Sbjct: 1 MAFVRLLLLSDIHANLTALQAVMEDAERRRYDQIVHLGDALGYGPHPHDVLEVLRDLDAK 60
Query: 59 GKVLCVRGNHDNAVAFGADWGFNPYARYAI----RWQQRVLTVENLEFLRRLPVRQFFKL 114
C+ GNHD + AD G PY + +WQ LT +L ++R R
Sbjct: 61 ----CIVGNHDQMLLEYAD-GTRPYKESTVASVLKWQLGRLTERDLRWVRDW--RDGIDD 113
Query: 115 GNRSYHVIHGSPRAPLDEYL--FPWLPDS--EFEDCLRYIREDDLIVGHTHVPMLKE--- 167
+ HG+P + LDEY+ P D+ +++ L + VGHTHVP +
Sbjct: 114 PDVGARYRHGTPTS-LDEYMDSVPAARDAFAQWQGMLAF-------VGHTHVPAVYATLN 165
Query: 168 ------IKG---------------RRVINPGSVGQPRDGDWRASYAIL-YENGKIEFFRV 205
IKG R ++NPGSVGQPRD D RASYAI E FRV
Sbjct: 166 APVGDWIKGHTLSDTTTYLVPPRARVILNPGSVGQPRDHDPRASYAIFDTARSAFEVFRV 225
Query: 206 EYDVEKAAEKILKAGLPEFLALRLFEG 232
YDV + I +AGLPE LA RL G
Sbjct: 226 PYDVARTQAAIREAGLPEVLAARLAVG 252
>pir||A75405 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459115|gb|AAF10932.1|AE001982_6 (AE001982)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 234
Score = 105 bits (259), Expect = 6e-22
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 4 MPIALISDIHSNYEALRAVWKEIKD--IEKVACMGDLVGYGASPNEVVEFIKREMEKGKV 61
M IA +SD+H N AL AV + + + + +V +GDLVGYGASP V++F++RE +
Sbjct: 1 MRIAFLSDLHGNIHALTAVKRFLNEQIVNQVVVVGDLVGYGASPGPVIDFVQREGWPASM 60
Query: 62 LCVRGNHDNAVA--FGADWGFNPYARYAIRWQQRVLTVENLEFLRRLPV--RQFFKLGNR 117
G+ D VA FG G A ++W ++ L+ L+FLRRLP R +G
Sbjct: 61 ----GSSDLRVALDFGEREGRRGVADQVLQWTRKTLSPAQLDFLRRLPPGGRLTTPIGRV 116
Query: 118 SYHVIHGSPRAPLDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKGRRVINPG 177
Y HGSP P ++ L ++E + ++VG THVP ++ + ++PG
Sbjct: 117 RY--FHGSPHDP-EQRLDLMSSETELRRLAEPLAARVIVVGGTHVPFVRTVDETTFVDPG 173
Query: 178 SVGQPRDGDWRASYAILYENG---KIEFFRVEYDVEKAAEKILKAGLPEFLA 226
SVG + + A AI+ G KI +V YD +A I+ LP +A
Sbjct: 174 SVGLSLNHEPGADVAIVDCVGRKPKISLHKVPYDYSSSAFDIMAWNLPPVIA 225
>pir||A75073 hypothetical protein PAB1723 - Pyrococcus abyssi (strain Orsay)
>gi|5458398|emb|CAB49886.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 252
Score = 102 bits (252), Expect = 4e-21
Identities = 73/246 (29%), Positives = 119/246 (47%), Gaps = 19/246 (7%)
Query: 6 IALISDIHSNYEALRAVWKEIKD-------IEKVACMGDLVGYGASPNEVVEFIKREMEK 58
+A++++I N AL A I++ IEK +G++VG P EV+E +K +
Sbjct: 4 VAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNLAKS 63
Query: 59 GKVLCVRGNHDNAVAFGADWGFNP----------YARYAIRWQQRVLTVENLEFLRRLPV 108
+V +RG +D +A P + + ++++ L E E+LR LPV
Sbjct: 64 NRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRDLPV 123
Query: 109 RQFFKLGNRSYHVIHGSPRAPLDEYLFPWLPDSEFEDCLRYIRE-DDLIVGHTHVPMLKE 167
K+G ++GSP P D + P P S +E +R ++E + LIV P+
Sbjct: 124 YLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPVEAM 183
Query: 168 IKGRRVINPGSVGQPRDGDWRASYAIL-YENGKIEFFRVEYDVEKAAEKILKAGLPEFLA 226
RV+ PGSVG P + +A++A++ E K +F V+YD E+I GLPE +
Sbjct: 184 TMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEERIRSEGLPEEII 243
Query: 227 LRLFEG 232
L+ G
Sbjct: 244 RILYHG 249
>pir||G71092 hypothetical protein PH1004 - Pyrococcus horikoshii
>gi|3257418|dbj|BAA30101.1| (AP000004) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 101 bits (249), Expect = 9e-21
Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 19/246 (7%)
Query: 6 IALISDIHSNYEALRAVWKEIKD-------IEKVACMGDLVGYGASPNEVVEFIKREMEK 58
+A++++I N+ AL A ++I++ IEK +G++VG P EV+E IK +
Sbjct: 4 VAVLANIAGNFPALTAALEKIEELKEEGYEIEKYYILGNIVGLFPYPREVIEAIKNLAKT 63
Query: 59 GKVLCVRGNHDNAVAFGADWGFNP----------YARYAIRWQQRVLTVENLEFLRRLPV 108
V +RG +D +A +P + + +++ L E E+LR LP+
Sbjct: 64 SNVKVIRGKYDQLIAMSDPHAGDPKYIDKLEIPDHLKATLKYTWEKLGHEGREYLRDLPI 123
Query: 109 RQFFKLGNRSYHVIHGSPRAPLDEYLFPWLPDSEFEDCLRYIRE-DDLIVGHTHVPMLKE 167
K+G ++GSP P D + P P S +E +R ++E + L+V P+
Sbjct: 124 YLVDKIGKNEIFGVYGSPVNPFDGEILPDQPTSYYEAIMRPVKEYEMLLVASPRYPLDAM 183
Query: 168 IKGRRVINPGSVGQPRDGDWRASYAIL-YENGKIEFFRVEYDVEKAAEKILKAGLPEFLA 226
RV+ PGS+G P + +A++A++ E K++F VEYD + ++I LPE +
Sbjct: 184 TMYGRVVCPGSIGFPPAREHKATFALVDAETLKVKFIEVEYDKKIIEDRIKLEKLPEEVI 243
Query: 227 LRLFEG 232
L+ G
Sbjct: 244 KILYHG 249
>dbj|BAB05578.1| (AP001513) unknown conserved protein in others [Bacillus
halodurans]
Length = 242
Score = 89.3 bits (218), Expect = 4e-17
Identities = 71/232 (30%), Positives = 114/232 (48%), Gaps = 19/232 (8%)
Query: 4 MPIALISDIHSNYEALRAVWKEI--KDIEKVACMGDLVGYGASPNEVVEFIKREMEKGKV 61
M A ISDIH N +AL AV +I K ++++ +GD+ G P +E ++ +V
Sbjct: 1 MKAAFISDIHGNAQALEAVLTDIESKQVDQIIVLGDICFRGIEPKRSLELVRSL----QV 56
Query: 62 LCVRGNHDNAVAFGADWGFNPYA-----RYAIRWQQRVLTVENLEFLRRLPVRQFFKLGN 116
V+GN D V G G P + R W L +++FL++LP F L +
Sbjct: 57 PVVKGNADEWVVRGIRKGEVPDSVLEVMRIEREWTYGKLDESDIDFLKQLPTVHTFSLSD 116
Query: 117 RSYHVI--HGSPRAPLDEYLFPWLPDSEFEDCLRYIREDDL-IVGHTHVPMLKEIKGRRV 173
+++V+ H +P + D + P D ++ L + +L + GH H+P ++ I G+ V
Sbjct: 117 -TWNVLCFHATPTSLFD-IVTPTAADHVVKEKLMAQNQANLYLYGHIHLPYVRFIDGKIV 174
Query: 174 INPGSVGQPRDGDWRASYAIL---YENGKIEFFRVEYDVEKAAEKILKAGLP 222
N GSVG P DG +ASY ++ E + RV YD+ E+I + P
Sbjct: 175 ANLGSVGLPFDGVCQASYLLVDGAEEQFSVTIQRVSYDIHSVCEQIEASDYP 226
>pir||G75297 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460038|gb|AAF11781.1|AE002056_1 (AE002056)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 248
Score = 74.1 bits (179), Expect = 1e-12
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 6 IALISDIHSNYEALRAVWKEI--KDIEKVACMGDLVGYGASPNEVVEFIKREMEKGKVLC 63
IA+++D+H+N A AV ++ + I ++ +GDLVG G P EV+++ +
Sbjct: 8 IAVLADLHANLAATLAVHADVQRRGISEIWVLGDLVGKGPRPREVLDWTREHATS----V 63
Query: 64 VRGNHDNAVAFGADWGFNPYARYAIRWQQRVLTVENLEFLRRLPVRQFFKLGNRSYHVIH 123
V+GN D VA + R W + LT E L +L LP + G + +H
Sbjct: 64 VQGNWDARVAGASH-------RPQDLWPRARLTPEQLRYLGELPYGIEEEFGGSCWRFVH 116
Query: 124 GS---------PRAPLDEYLFPWLPDSEFEDCLRYIREDDLIVGHTHVPMLKEIKGRRVI 174
S P + L + L +LP+ + D L+ TH +L +++GR +I
Sbjct: 117 ASSRGLFHRLYPHSSLPDQLDAFLPNPALG---LHEHADALVYADTHEALLLDVEGRPLI 173
Query: 175 NPGSVGQPRDGDWRASYAIL 194
N GSVG P D SY IL
Sbjct: 174 NCGSVGNPLDST-LPSYLIL 192
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.443
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93996939
Number of Sequences: 2977
Number of extensions: 4047879
Number of successful extensions: 8099
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8061
Number of HSP's gapped (non-prelim): 13
length of query: 233
length of database: 189,106,746
effective HSP length: 49
effective length of query: 184
effective length of database: 159,780,883
effective search space: 29399682472
effective search space used: 29399682472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)