BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2000 (PAB2000) DE:Hypothetical protein
         (370 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75173 hypothetical protein PAB2000 - Pyrococcus abyssi (st...   746  0.0
pir||C71041 hypothetical protein PH1619 - Pyrococcus horikoshii ...   633  0.0
pir||D69204 conserved hypothetical protein MTH781 - Methanobacte...   262  5e-69
sp|Q58079|Y665_METJA HYPOTHETICAL PROTEIN MJ0665 >gi|2128435|pir...   211  1e-53
pir||H75099 hypothetical protein PAB1589 - Pyrococcus abyssi (st...    93  4e-18

>pir||F75173 hypothetical protein PAB2000 - Pyrococcus abyssi (strain Orsay)
           >gi|5457979|emb|CAB49469.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 370
           
 Score =  746 bits (1905), Expect = 0.0
 Identities = 370/370 (100%), Positives = 370/370 (100%)

Query: 1   MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
           MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV
Sbjct: 1   MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60

Query: 61  TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
           TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN
Sbjct: 61  TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120

Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK 180
           KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK
Sbjct: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK 180

Query: 181 YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD 240
           YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD
Sbjct: 181 YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD 240

Query: 241 NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP 300
           NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP
Sbjct: 241 NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP 300

Query: 301 IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK 360
           IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK
Sbjct: 301 IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK 360

Query: 361 QENHGQYQKF 370
           QENHGQYQKF
Sbjct: 361 QENHGQYQKF 370


>pir||C71041 hypothetical protein PH1619 - Pyrococcus horikoshii
           >gi|3258048|dbj|BAA30731.1| (AP000006) 370aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 370
           
 Score =  633 bits (1616), Expect = 0.0
 Identities = 299/369 (81%), Positives = 342/369 (92%)

Query: 1   MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
           MKVWIDIMNSPHAHFFKGIIRELE+RGFEVLVTTREFDGLTQILDMLGIDYIS+GKHGG 
Sbjct: 1   MKVWIDIMNSPHAHFFKGIIRELEKRGFEVLVTTREFDGLTQILDMLGIDYISIGKHGGA 60

Query: 61  TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
           TLEGKLLASAERVYKLSKLIIEEKPD+A+YKNNPEAPRIAFGLKI SIGFVDNETA+PQN
Sbjct: 61  TLEGKLLASAERVYKLSKLIIEEKPDLAIYKNNPEAPRIAFGLKIPSIGFVDNETAVPQN 120

Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK 180
           KLMFPFT RLLYPK IDAYELL+CGADPNSL PVN IAE+AN+YGF+P+D+VLKELG++K
Sbjct: 121 KLMFPFTNRLLYPKPIDAYELLRCGADPNSLRPVNGIAEIANIYGFKPEDTVLKELGVKK 180

Query: 181 YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD 240
           YSYIVMRPEPIKATYFNGDRERSILED+IPLLPD+PI+LFPR++EQ+++FE+F+N+IIP+
Sbjct: 181 YSYIVMRPEPIKATYFNGDRERSILEDIIPLLPDLPIILFPRTDEQREIFEKFDNIIIPE 240

Query: 241 NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP 300
             VDT++LLFYA++M+GAGGTMNREALALGTPAISTYPG+LLAVTKWLI+LGVLYHSTNP
Sbjct: 241 KAVDTLTLLFYAKLMVGAGGTMNREALALGTPAISTYPGKLLAVTKWLIDLGVLYHSTNP 300

Query: 301 IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK 360
           IEV  K WEI+R+N  YR+ IR VM +MENPVEA+I+E+E      +  SYES YK SYK
Sbjct: 301 IEVGMKVWEIVRKNSVYRRNIRTVMSSMENPVEAIIEEVENLTYPGQFRSYESFYKSSYK 360

Query: 361 QENHGQYQK 369
           ++ +GQYQK
Sbjct: 361 EKGYGQYQK 369


>pir||D69204 conserved hypothetical protein MTH781 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621871|gb|AAB85283.1| (AE000856) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 357
           
 Score =  262 bits (662), Expect = 5e-69
 Identities = 128/322 (39%), Positives = 205/322 (62%), Gaps = 4/322 (1%)

Query: 1   MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
           +K+WIDI N+PH  FF+ +I   +  G +V++T R+F  + +++ + G ++ S+GKHG V
Sbjct: 16  LKIWIDITNAPHVRFFRDVITYFQEEGEDVIITARKFGDIHRLMKLFGFEFTSIGKHG-V 74

Query: 61  TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
           TL  KL+ S +R Y LSK I E++PD+ + K++ E PR+ FGL I S+  +DNE A+  N
Sbjct: 75  TLSEKLIESTKRAYNLSKFIAEQRPDVGLSKHSIELPRVTFGLGIPSVYVLDNEHALAAN 134

Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELG--L 178
           KL  P  + ++ P+VID ++++K GADPN +      +E+ +   F  ++++ ++L   L
Sbjct: 135 KLTLPLCDNIIMPEVIDLWDIMKTGADPNRIRRYRGTSEIIHFQNFEYNENIFEDLNLKL 194

Query: 179 EKYSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMP-IVLFPRSEEQKKVFERFENVI 237
           E+   I+MRPEP  A+Y + D   S+L  ++ +L D   I++ PR  EQ ++FE ++NV 
Sbjct: 195 EREKTILMRPEPSLASYLDADCHESVLTPIVEVLKDYANILIIPRFREQAEIFEGYDNVT 254

Query: 238 IPDNVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHS 297
           I    VDT SL+    ++IGAGGTMNREA  LGTP IS YPG+ L+V ++ I+ G++Y S
Sbjct: 255 IIKPPVDTFSLMKRCDLVIGAGGTMNREAALLGTPVISCYPGKPLSVDRFYIDNGLMYRS 314

Query: 298 TNPIEVATKAWEIIRRNRRYRK 319
           T+  E+   A  ++   R  +K
Sbjct: 315 TDVDEIVNTALRLLVSKREQKK 336


>sp|Q58079|Y665_METJA HYPOTHETICAL PROTEIN MJ0665 >gi|2128435|pir||A64383 hypothetical
           protein MJ0665 - Methanococcus jannaschii
           >gi|1591378|gb|AAB98656.1| (U67513) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 341
           
 Score =  211 bits (531), Expect = 1e-53
 Identities = 132/348 (37%), Positives = 200/348 (56%), Gaps = 24/348 (6%)

Query: 1   MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
           + VWID+ N+PH H+F  +I++ E+ G E L+T R+   L +++++       +GKHG  
Sbjct: 4   LDVWIDLTNAPHVHYFCQLIKKFEKEGIEYLLTFRDSGNLAKLVEIYNFVGKCIGKHGN- 62

Query: 61  TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
           TL+ KL+  AERV  L++LI   KP +A+ K++ E PR+AFGL I  I  VDNE A  QN
Sbjct: 63  TLKDKLIFYAERVIGLTELISNVKPKVAIAKHSVELPRVAFGLNIPVIFVVDNEHAEAQN 122

Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVY----GFRP-DDSVLKE 175
           KL  P  + ++ P   D  +L + G    + +      EVANV     G+ P D+ +LK+
Sbjct: 123 KLTLPLADEIIKPIATDENKLKEFGG--RNFISFEGTCEVANVNSRLKGYYPIDNEILKK 180

Query: 176 LGL-EKYSYIVMRPEPIKATYFNGDRERSILEDVIPLLP---DMPIVLFPRSEEQKKVFE 231
           LG+ +    IVMRP P  ++Y NG ++  IL  +I  L    D  IV+FPR E QK+++ 
Sbjct: 181 LGICDDNPTIVMRPCP-NSSYCNGHKD--ILPKIIEKLQKRIDCNIVVFPRDEHQKEIY- 236

Query: 232 RFENVIIPDNVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIEL 291
           R  N I+P   +D +SLL+ +  MIGAGGTMNRE+  LG P +S YP  LL V K+LIE 
Sbjct: 237 REVNAIVPKETIDALSLLYNSDFMIGAGGTMNRESAILGIPTVSCYPQELLGVDKYLIEK 296

Query: 292 GVLYHSTNPIEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEI 339
             + H+ +  E+     + + +        R  +I +E+P + M + +
Sbjct: 297 DRMIHTNDIKEIINYVEDNLGK--------RMGVIELEDPTDLMFERV 336


>pir||H75099 hypothetical protein PAB1589 - Pyrococcus abyssi (strain Orsay)
           >gi|5458613|emb|CAB50101.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 344
           
 Score = 93.2 bits (228), Expect = 4e-18
 Identities = 92/335 (27%), Positives = 158/335 (46%), Gaps = 39/335 (11%)

Query: 2   KVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGVT 61
           +VWIDI N+    FFK II EL+ + +++ +T  +   + ++L  LG     +       
Sbjct: 4   RVWIDIANTAEIPFFKPIISELKHK-YQIYLTCWKRGEVPELLRSLGFQVKPILSDFADP 62

Query: 62  LEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQNK 121
           ++ K L+   R   L+      K D  +   N      A+  +  SI  +DN+  +   +
Sbjct: 63  IK-KALSVGLRTSLLTATA--PKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNAPQ 119

Query: 122 LMFPFTER--------LLYPKVIDAYELLK--CGADPNSLVPVNSIAEVANVYGFRPDDS 171
            +F   E         +L P++  AY+      G D   ++    I E  ++  + PD  
Sbjct: 120 SIFQRLENRVKKLAKYVLVPEI--AYDEFSRFFGKD---ILTYPGIKEHVSISDYVPDPE 174

Query: 172 VLKELGLEKYSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDM------PIVLFPRSEE 225
            L ++  E+Y  IV+RPE + + Y          E ++P L DM       I+  PR++ 
Sbjct: 175 FLSKVPFEEY--IVLRPESLASHYVLEK------ESIVPELLDMFTKEGVNIIYLPRNKA 226

Query: 226 QKKVFERFENVIIPDNVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGR-LLAV 284
           ++ +   FE V IP   ++ + L +Y+  ++   GTM REA  LG  A+S +PG+ LLA+
Sbjct: 227 ERALSRGFE-VYIPPKPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAI 285

Query: 285 TKWLIELGVLYHSTNPIEVATKAWEIIRRNRRYRK 319
            K+LIE G ++HS +P  +     E +  N + RK
Sbjct: 286 DKYLIEKGEIFHSRDPRAIV----EYVISNLKVRK 316


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.404 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142004822
Number of Sequences: 2977
Number of extensions: 5989921
Number of successful extensions: 13356
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13344
Number of HSP's gapped (non-prelim): 5
length of query: 370
length of database: 189,106,746
effective HSP length: 56
effective length of query: 314
effective length of database: 155,591,474
effective search space: 48855722836
effective search space used: 48855722836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)