BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2000 (PAB2000) DE:Hypothetical protein
(370 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75173 hypothetical protein PAB2000 - Pyrococcus abyssi (st... 746 0.0
pir||C71041 hypothetical protein PH1619 - Pyrococcus horikoshii ... 633 0.0
pir||D69204 conserved hypothetical protein MTH781 - Methanobacte... 262 5e-69
sp|Q58079|Y665_METJA HYPOTHETICAL PROTEIN MJ0665 >gi|2128435|pir... 211 1e-53
pir||H75099 hypothetical protein PAB1589 - Pyrococcus abyssi (st... 93 4e-18
>pir||F75173 hypothetical protein PAB2000 - Pyrococcus abyssi (strain Orsay)
>gi|5457979|emb|CAB49469.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 370
Score = 746 bits (1905), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV
Sbjct: 1 MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
Query: 61 TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN
Sbjct: 61 TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK 180
KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK
Sbjct: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK 180
Query: 181 YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD 240
YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD
Sbjct: 181 YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD 240
Query: 241 NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP 300
NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP
Sbjct: 241 NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP 300
Query: 301 IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK 360
IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK
Sbjct: 301 IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK 360
Query: 361 QENHGQYQKF 370
QENHGQYQKF
Sbjct: 361 QENHGQYQKF 370
>pir||C71041 hypothetical protein PH1619 - Pyrococcus horikoshii
>gi|3258048|dbj|BAA30731.1| (AP000006) 370aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 370
Score = 633 bits (1616), Expect = 0.0
Identities = 299/369 (81%), Positives = 342/369 (92%)
Query: 1 MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
MKVWIDIMNSPHAHFFKGIIRELE+RGFEVLVTTREFDGLTQILDMLGIDYIS+GKHGG
Sbjct: 1 MKVWIDIMNSPHAHFFKGIIRELEKRGFEVLVTTREFDGLTQILDMLGIDYISIGKHGGA 60
Query: 61 TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
TLEGKLLASAERVYKLSKLIIEEKPD+A+YKNNPEAPRIAFGLKI SIGFVDNETA+PQN
Sbjct: 61 TLEGKLLASAERVYKLSKLIIEEKPDLAIYKNNPEAPRIAFGLKIPSIGFVDNETAVPQN 120
Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELGLEK 180
KLMFPFT RLLYPK IDAYELL+CGADPNSL PVN IAE+AN+YGF+P+D+VLKELG++K
Sbjct: 121 KLMFPFTNRLLYPKPIDAYELLRCGADPNSLRPVNGIAEIANIYGFKPEDTVLKELGVKK 180
Query: 181 YSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMPIVLFPRSEEQKKVFERFENVIIPD 240
YSYIVMRPEPIKATYFNGDRERSILED+IPLLPD+PI+LFPR++EQ+++FE+F+N+IIP+
Sbjct: 181 YSYIVMRPEPIKATYFNGDRERSILEDIIPLLPDLPIILFPRTDEQREIFEKFDNIIIPE 240
Query: 241 NVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHSTNP 300
VDT++LLFYA++M+GAGGTMNREALALGTPAISTYPG+LLAVTKWLI+LGVLYHSTNP
Sbjct: 241 KAVDTLTLLFYAKLMVGAGGTMNREALALGTPAISTYPGKLLAVTKWLIDLGVLYHSTNP 300
Query: 301 IEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEIEESGQTDKPGSYESLYKGSYK 360
IEV K WEI+R+N YR+ IR VM +MENPVEA+I+E+E + SYES YK SYK
Sbjct: 301 IEVGMKVWEIVRKNSVYRRNIRTVMSSMENPVEAIIEEVENLTYPGQFRSYESFYKSSYK 360
Query: 361 QENHGQYQK 369
++ +GQYQK
Sbjct: 361 EKGYGQYQK 369
>pir||D69204 conserved hypothetical protein MTH781 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621871|gb|AAB85283.1| (AE000856) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 357
Score = 262 bits (662), Expect = 5e-69
Identities = 128/322 (39%), Positives = 205/322 (62%), Gaps = 4/322 (1%)
Query: 1 MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
+K+WIDI N+PH FF+ +I + G +V++T R+F + +++ + G ++ S+GKHG V
Sbjct: 16 LKIWIDITNAPHVRFFRDVITYFQEEGEDVIITARKFGDIHRLMKLFGFEFTSIGKHG-V 74
Query: 61 TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
TL KL+ S +R Y LSK I E++PD+ + K++ E PR+ FGL I S+ +DNE A+ N
Sbjct: 75 TLSEKLIESTKRAYNLSKFIAEQRPDVGLSKHSIELPRVTFGLGIPSVYVLDNEHALAAN 134
Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVYGFRPDDSVLKELG--L 178
KL P + ++ P+VID ++++K GADPN + +E+ + F ++++ ++L L
Sbjct: 135 KLTLPLCDNIIMPEVIDLWDIMKTGADPNRIRRYRGTSEIIHFQNFEYNENIFEDLNLKL 194
Query: 179 EKYSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDMP-IVLFPRSEEQKKVFERFENVI 237
E+ I+MRPEP A+Y + D S+L ++ +L D I++ PR EQ ++FE ++NV
Sbjct: 195 EREKTILMRPEPSLASYLDADCHESVLTPIVEVLKDYANILIIPRFREQAEIFEGYDNVT 254
Query: 238 IPDNVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIELGVLYHS 297
I VDT SL+ ++IGAGGTMNREA LGTP IS YPG+ L+V ++ I+ G++Y S
Sbjct: 255 IIKPPVDTFSLMKRCDLVIGAGGTMNREAALLGTPVISCYPGKPLSVDRFYIDNGLMYRS 314
Query: 298 TNPIEVATKAWEIIRRNRRYRK 319
T+ E+ A ++ R +K
Sbjct: 315 TDVDEIVNTALRLLVSKREQKK 336
>sp|Q58079|Y665_METJA HYPOTHETICAL PROTEIN MJ0665 >gi|2128435|pir||A64383 hypothetical
protein MJ0665 - Methanococcus jannaschii
>gi|1591378|gb|AAB98656.1| (U67513) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 341
Score = 211 bits (531), Expect = 1e-53
Identities = 132/348 (37%), Positives = 200/348 (56%), Gaps = 24/348 (6%)
Query: 1 MKVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGV 60
+ VWID+ N+PH H+F +I++ E+ G E L+T R+ L +++++ +GKHG
Sbjct: 4 LDVWIDLTNAPHVHYFCQLIKKFEKEGIEYLLTFRDSGNLAKLVEIYNFVGKCIGKHGN- 62
Query: 61 TLEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQN 120
TL+ KL+ AERV L++LI KP +A+ K++ E PR+AFGL I I VDNE A QN
Sbjct: 63 TLKDKLIFYAERVIGLTELISNVKPKVAIAKHSVELPRVAFGLNIPVIFVVDNEHAEAQN 122
Query: 121 KLMFPFTERLLYPKVIDAYELLKCGADPNSLVPVNSIAEVANVY----GFRP-DDSVLKE 175
KL P + ++ P D +L + G + + EVANV G+ P D+ +LK+
Sbjct: 123 KLTLPLADEIIKPIATDENKLKEFGG--RNFISFEGTCEVANVNSRLKGYYPIDNEILKK 180
Query: 176 LGL-EKYSYIVMRPEPIKATYFNGDRERSILEDVIPLLP---DMPIVLFPRSEEQKKVFE 231
LG+ + IVMRP P ++Y NG ++ IL +I L D IV+FPR E QK+++
Sbjct: 181 LGICDDNPTIVMRPCP-NSSYCNGHKD--ILPKIIEKLQKRIDCNIVVFPRDEHQKEIY- 236
Query: 232 RFENVIIPDNVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGRLLAVTKWLIEL 291
R N I+P +D +SLL+ + MIGAGGTMNRE+ LG P +S YP LL V K+LIE
Sbjct: 237 REVNAIVPKETIDALSLLYNSDFMIGAGGTMNRESAILGIPTVSCYPQELLGVDKYLIEK 296
Query: 292 GVLYHSTNPIEVATKAWEIIRRNRRYRKFIREVMITMENPVEAMIKEI 339
+ H+ + E+ + + + R +I +E+P + M + +
Sbjct: 297 DRMIHTNDIKEIINYVEDNLGK--------RMGVIELEDPTDLMFERV 336
>pir||H75099 hypothetical protein PAB1589 - Pyrococcus abyssi (strain Orsay)
>gi|5458613|emb|CAB50101.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 344
Score = 93.2 bits (228), Expect = 4e-18
Identities = 92/335 (27%), Positives = 158/335 (46%), Gaps = 39/335 (11%)
Query: 2 KVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGVT 61
+VWIDI N+ FFK II EL+ + +++ +T + + ++L LG +
Sbjct: 4 RVWIDIANTAEIPFFKPIISELKHK-YQIYLTCWKRGEVPELLRSLGFQVKPILSDFADP 62
Query: 62 LEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQNK 121
++ K L+ R L+ K D + N A+ + SI +DN+ + +
Sbjct: 63 IK-KALSVGLRTSLLTATA--PKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNAPQ 119
Query: 122 LMFPFTER--------LLYPKVIDAYELLK--CGADPNSLVPVNSIAEVANVYGFRPDDS 171
+F E +L P++ AY+ G D ++ I E ++ + PD
Sbjct: 120 SIFQRLENRVKKLAKYVLVPEI--AYDEFSRFFGKD---ILTYPGIKEHVSISDYVPDPE 174
Query: 172 VLKELGLEKYSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDM------PIVLFPRSEE 225
L ++ E+Y IV+RPE + + Y E ++P L DM I+ PR++
Sbjct: 175 FLSKVPFEEY--IVLRPESLASHYVLEK------ESIVPELLDMFTKEGVNIIYLPRNKA 226
Query: 226 QKKVFERFENVIIPDNVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGR-LLAV 284
++ + FE V IP ++ + L +Y+ ++ GTM REA LG A+S +PG+ LLA+
Sbjct: 227 ERALSRGFE-VYIPPKPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAI 285
Query: 285 TKWLIELGVLYHSTNPIEVATKAWEIIRRNRRYRK 319
K+LIE G ++HS +P + E + N + RK
Sbjct: 286 DKYLIEKGEIFHSRDPRAIV----EYVISNLKVRK 316
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142004822
Number of Sequences: 2977
Number of extensions: 5989921
Number of successful extensions: 13356
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13344
Number of HSP's gapped (non-prelim): 5
length of query: 370
length of database: 189,106,746
effective HSP length: 56
effective length of query: 314
effective length of database: 155,591,474
effective search space: 48855722836
effective search space used: 48855722836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)