BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2001 (PAB2001) DE:Hypothetical protein
         (143 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75173 hypothetical protein PAB2001 - Pyrococcus abyssi (st...   290  6e-78
pir||E71041 hypothetical protein PH1621 - Pyrococcus horikoshii ...   222  2e-57

>pir||C75173 hypothetical protein PAB2001 - Pyrococcus abyssi (strain Orsay)
           >gi|5457976|emb|CAB49466.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 143
           
 Score =  290 bits (734), Expect = 6e-78
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MAKYKDLEIRVVGKAVSPTKTLVKTENFEIMVDKLGGEHPCPLDYTLAALAGCLNIVGHM 60
           MAKYKDLEIRVVGKAVSPTKTLVKTENFEIMVDKLGGEHPCPLDYTLAALAGCLNIVGHM
Sbjct: 1   MAKYKDLEIRVVGKAVSPTKTLVKTENFEIMVDKLGGEHPCPLDYTLAALAGCLNIVGHM 60

Query: 61  VAKDMGFNIEELEIEVTGIFNPAKFMGLDGERAGFKSVKAIIRVKADVDEEKLKEWLKKV 120
           VAKDMGFNIEELEIEVTGIFNPAKFMGLDGERAGFKSVKAIIRVKADVDEEKLKEWLKKV
Sbjct: 61  VAKDMGFNIEELEIEVTGIFNPAKFMGLDGERAGFKSVKAIIRVKADVDEEKLKEWLKKV 120

Query: 121 EERCPVSDNLTNLTPTEVIVEKK 143
           EERCPVSDNLTNLTPTEVIVEKK
Sbjct: 121 EERCPVSDNLTNLTPTEVIVEKK 143


>pir||E71041 hypothetical protein PH1621 - Pyrococcus horikoshii
           >gi|3258050|dbj|BAA30733.1| (AP000006) 143aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 143
           
 Score =  222 bits (559), Expect = 2e-57
 Identities = 104/142 (73%), Positives = 121/142 (84%)

Query: 1   MAKYKDLEIRVVGKAVSPTKTLVKTENFEIMVDKLGGEHPCPLDYTLAALAGCLNIVGHM 60
           M ++KD+EIRV+GKAVS TKTL+K  NFEI +DKLGGE+P PLDYTLAALAGC+NIVGHM
Sbjct: 1   MPQFKDMEIRVIGKAVSSTKTLIKAGNFEIYIDKLGGEYPSPLDYTLAALAGCINIVGHM 60

Query: 61  VAKDMGFNIEELEIEVTGIFNPAKFMGLDGERAGFKSVKAIIRVKADVDEEKLKEWLKKV 120
           VAK+MGF I  LEIEV G FNPAKF G DG+RAGFKS++  IRV A VD+E LKEW+K+V
Sbjct: 61  VAKEMGFEINSLEIEVNGTFNPAKFKGFDGDRAGFKSIEVTIRVDARVDDETLKEWIKRV 120

Query: 121 EERCPVSDNLTNLTPTEVIVEK 142
           EERCPVSDNL N TPTE+ V+K
Sbjct: 121 EERCPVSDNLINETPTEITVKK 142


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53294192
Number of Sequences: 2977
Number of extensions: 2033448
Number of successful extensions: 6051
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6049
Number of HSP's gapped (non-prelim): 2
length of query: 143
length of database: 189,106,746
effective HSP length: 54
effective length of query: 89
effective length of database: 156,788,448
effective search space: 13954171872
effective search space used: 13954171872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)