BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2008 506999 506502 -166 !not a gene!
         (166 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71043 hypothetical protein PH1635 - Pyrococcus horikoshii ...   162  2e-39
pir||E72557 hypothetical protein APE1745 - Aeropyrum pernix (str...    85  4e-16

>pir||C71043 hypothetical protein PH1635 - Pyrococcus horikoshii
           >gi|3258064|dbj|BAA30747.1| (AP000006) 148aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 148
           
 Score =  162 bits (406), Expect = 2e-39
 Identities = 87/116 (75%), Positives = 91/116 (78%)

Query: 51  IKPSAXXXXXXXXXXXXTPLPFGFLLISSSIVMASPPASSIFLLAVSLNFQAATMTFFSI 110
           + PSA            TPLP GFL +SSSIV+ASPPAS IF LAVSLNF AATMTFFS 
Sbjct: 1   MSPSALIILITHHSIIITPLPLGFLSMSSSIVIASPPASVIFFLAVSLNFHAATMTFFSN 60

Query: 111 LPAPRTLPGTTIMSPSFAYLFILLTFTSALCLLGLSSLQAMSFHILTFSSLDFFLR 166
           LPAPRTLPGTTI+SPS AYL ILLTFTSALCLLGLSSLQA SF I T SSLDFFLR
Sbjct: 61  LPAPRTLPGTTIISPSLAYLLILLTFTSALCLLGLSSLQAKSFQIFTPSSLDFFLR 116


>pir||E72557 hypothetical protein APE1745 - Aeropyrum pernix (strain K1)
           >gi|5105433|dbj|BAA80746.1| (AP000062) 132aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 132
           
 Score = 85.0 bits (207), Expect = 4e-16
 Identities = 50/81 (61%), Positives = 54/81 (65%)

Query: 70  LPFGFLLISSSIVMASPPASSIFLLAVSLNFQAATMTFFSILPAPRTLPGTTIMSPSFAY 129
           LP GF L +SS VMA  P S I   A  LN +AAT+TFFS  PAPRTLPGT  +SPS A 
Sbjct: 5   LPRGFSLTASSRVMALEPESLILTSACRLNERAATVTFFSKAPAPRTLPGTMTISPSLAC 64

Query: 130 LFILLTFTSALCLLGLSSLQA 150
           LFILL  TSAL L GLS   A
Sbjct: 65  LFILLRLTSALLLRGLSRSSA 85


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.141    0.404 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42817464
Number of Sequences: 2977
Number of extensions: 1328047
Number of successful extensions: 4940
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4938
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 189,106,746
effective HSP length: 53
effective length of query: 113
effective length of database: 157,386,935
effective search space: 17784723655
effective search space used: 17784723655
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 162 (67.5 bits)