BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2009 (PAB2009) DE:Hypothetical protein
         (173 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75170 hypothetical protein PAB2009 - Pyrococcus abyssi (st...   344  3e-94
pir||C71044 hypothetical protein PH1643 - Pyrococcus horikoshii ...   172  3e-42

>pir||H75170 hypothetical protein PAB2009 - Pyrococcus abyssi (strain Orsay)
           >gi|5457957|emb|CAB49447.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 173
           
 Score =  344 bits (874), Expect = 3e-94
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MLLRCLLMKILKLIIVLSLIGIVLVAGCIGQREETKIPSKHGVIEMRVKISEKGENRYLV 60
           MLLRCLLMKILKLIIVLSLIGIVLVAGCIGQREETKIPSKHGVIEMRVKISEKGENRYLV
Sbjct: 1   MLLRCLLMKILKLIIVLSLIGIVLVAGCIGQREETKIPSKHGVIEMRVKISEKGENRYLV 60

Query: 61  NVTIRNVGNASLRVALPIQFITLKFKLYKDSRELEYRGPVPTYLPLTESQTRVLDPGESL 120
           NVTIRNVGNASLRVALPIQFITLKFKLYKDSRELEYRGPVPTYLPLTESQTRVLDPGESL
Sbjct: 61  NVTIRNVGNASLRVALPIQFITLKFKLYKDSRELEYRGPVPTYLPLTESQTRVLDPGESL 120

Query: 121 SRSYIVDLCWWNITKAGTYQLAVSYVTKNVASEIDFLRTEITIMQNVTAKSCH 173
           SRSYIVDLCWWNITKAGTYQLAVSYVTKNVASEIDFLRTEITIMQNVTAKSCH
Sbjct: 121 SRSYIVDLCWWNITKAGTYQLAVSYVTKNVASEIDFLRTEITIMQNVTAKSCH 173


>pir||C71044 hypothetical protein PH1643 - Pyrococcus horikoshii
           >gi|3258072|dbj|BAA30755.1| (AP000006) 161aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 161
           
 Score =  172 bits (431), Expect = 3e-42
 Identities = 86/163 (52%), Positives = 118/163 (71%), Gaps = 7/163 (4%)

Query: 12  KLIIVLSLIGIVLVAGCIGQREETKIPSKHGVIEMRVKISEKGENRYLVNVTIRNVGNAS 71
           KLI+V++++ I+   GC+ Q E+T   SK G + M  KI E+G N+ LV + I+NVGN++
Sbjct: 4   KLILVITMVAILF--GCLAQEEKT--ASKFGQLRMGTKIEERGNNKVLVRIFIKNVGNST 59

Query: 72  LRVALPIQFITLKFKLYKDSRELEYRGPVPTYLPLTESQTRVLDPGESLSRSYIVDLCWW 131
           +RVA+PI F+TLKF+LYK +  L+++GPVPTYLPLTE QT++L PGE L   Y+VDLCWW
Sbjct: 60  VRVAMPIYFVTLKFQLYKGNETLKFKGPVPTYLPLTEKQTKILKPGEGLETEYLVDLCWW 119

Query: 132 NITKAGTYQLAVSYVTKNVASE-IDFLRTEITIMQNVTA-KSC 172
           N++K G Y L+V Y T NV S   DF+R    + QNVTA K+C
Sbjct: 120 NVSK-GKYTLSVIYDTINVESRGTDFVRVRFEVKQNVTANKTC 161


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.138    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53838496
Number of Sequences: 2977
Number of extensions: 1986344
Number of successful extensions: 4854
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4850
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 189,106,746
effective HSP length: 54
effective length of query: 119
effective length of database: 156,788,448
effective search space: 18657825312
effective search space used: 18657825312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)