BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2010 (PAB2010) DE:Hypothetical protein
(379 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75170 hypothetical protein PAB2010 - Pyrococcus abyssi (st... 729 0.0
pir||E71221 hypothetical protein PH0032 - Pyrococcus horikoshii ... 265 5e-70
pir||C82449 conserved hypothetical protein VCA0526 [imported] - ... 146 5e-34
sp|P37019|YADQ_ECOLI HYPOTHETICAL 46.0 KD PROTEIN IN HEML-PFS IN... 145 1e-33
pir||C64739 yadQ protein - Escherichia coli >gi|1552733|gb|AAB08... 145 1e-33
pir||S76449 hypothetical protein - Synechocystis sp. (strain PCC... 116 4e-25
pir||S74833 hypothetical protein sll0855 - Synechocystis sp. (st... 109 7e-23
sp|Q57753|Y305_METJA HYPOTHETICAL PROTEIN MJ0305 >gi|2128226|pir... 106 6e-22
dbj|BAA15316.1| (D90801) ORF_ID:o311#6; similar to [SwissProt Ac... 102 7e-21
pir||B64915 probable membrane protein b1592 - Escherichia coli >... 102 7e-21
gb|AAG19829.1| (AE005067) chloride channel; Clc [Halobacterium s... 98 2e-19
gb|AAF79509.1|AC002328_17 (AC002328) F20N2.5 [Arabidopsis thaliana] 90 4e-17
gi|11499010 chloride channel, putative [Archaeoglobus fulgidus] ... 90 5e-17
gb|AAK43299.1| Conserved hypothetical protein [Sulfolobus solfat... 84 2e-15
gb|AAF49542.1| (AE003528) CG5284 gene product [Drosophila melano... 84 2e-15
pir||T39817 hypothetical protein SPBC19C7.11 - fission yeast (S... 84 3e-15
emb|CAC12582.1| (AL445067) chloride channel (CLC-3) related prot... 74 3e-12
gb|AAD53928.1|AF179611_12 (AF179611) chloride channel protein [Z... 70 4e-11
>pir||G75170 hypothetical protein PAB2010 - Pyrococcus abyssi (strain Orsay)
>gi|5457956|emb|CAB49446.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 379
Score = 729 bits (1862), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MKAYTLVKIGVLAGVIVGAYKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFSYYIIS 60
MKAYTLVKIGVLAGVIVGAYKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFSYYIIS
Sbjct: 1 MKAYTLVKIGVLAGVIVGAYKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFSYYIIS 60
Query: 61 RLLNREPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLG 120
RLLNREPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLG
Sbjct: 61 RLLNREPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLG 120
Query: 121 GSIAMIFSKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISA 180
GSIAMIFSKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISA
Sbjct: 121 GSIAMIFSKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISA 180
Query: 181 LISHYLFPVRPTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRKIKLIIPFFESW 240
LISHYLFPVRPTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRKIKLIIPFFESW
Sbjct: 181 LISHYLFPVRPTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRKIKLIIPFFESW 240
Query: 241 ILLPIMPLALGGGHALIFSLFTGNFGITFLLLLLLLKSIHTILSYTSGAPGGLFLPSLAI 300
ILLPIMPLALGGGHALIFSLFTGNFGITFLLLLLLLKSIHTILSYTSGAPGGLFLPSLAI
Sbjct: 241 ILLPIMPLALGGGHALIFSLFTGNFGITFLLLLLLLKSIHTILSYTSGAPGGLFLPSLAI 300
Query: 301 GAIIGKLFVETFGVSNTFVLAGMVGVLSGTLRAPMTGAILMAEITKSPRGFLDFLVAGLS 360
GAIIGKLFVETFGVSNTFVLAGMVGVLSGTLRAPMTGAILMAEITKSPRGFLDFLVAGLS
Sbjct: 301 GAIIGKLFVETFGVSNTFVLAGMVGVLSGTLRAPMTGAILMAEITKSPRGFLDFLVAGLS 360
Query: 361 SYATSYALKKVKLQKRTLR 379
SYATSYALKKVKLQKRTLR
Sbjct: 361 SYATSYALKKVKLQKRTLR 379
>pir||E71221 hypothetical protein PH0032 - Pyrococcus horikoshii
>gi|3256417|dbj|BAA29100.1| (AP000001) 370aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 370
Score = 265 bits (671), Expect = 5e-70
Identities = 151/366 (41%), Positives = 225/366 (61%), Gaps = 18/366 (4%)
Query: 6 LVKIGVLAGVIVGAYKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFSYYIISRLLNR 65
L+ +G+L G+IVGAYK+LV ++ Y +++ + ++W + T+ + + + +L +
Sbjct: 4 LILVGILVGLIVGAYKVLVCLVGDLYPAISEGIRRDIRFALLWFLFTVLAIFTVEVMLKK 63
Query: 66 EPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGGSIAM 125
EP + GGI Q+ V+ G YNPV+VI+ KI G LL ++SG SLG+ GPS+QLGGS+AM
Sbjct: 64 EPAASSGGINQMYLVLHGILRYNPVKVILTKIFGSLLVIMSGFSLGRVGPSVQLGGSLAM 123
Query: 126 IFSKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISALISHY 185
+ + LI AG AAG++A EAPI G+V T E+ +I T I+ L S+ +AL+S
Sbjct: 124 VLGEG--LIDAGIAAGVAATLEAPITGVVFTLEVFKIRPTLYKIVTLLFASVPAALVSKL 181
Query: 186 LFPVR--PTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRKI------KLIIPFF 237
+FP+R P+ Y+ DY ++LLG+ TG YSS F+ L+ +RK K +
Sbjct: 182 MFPMRFWPSFEYSYG-LFDYLLILLLGIFTGLYSSAFMQLLFKLRKFLVKRSYKFVPSLL 240
Query: 238 ESWILLPIMPLALGGGHALIFSLFTGNF-GITFLLLLLLLKSIHTILSYTSGAPGGLFLP 296
SW + ++P LGGG L++SL + + L+LLL+LKSIHT+ S S APGGLF P
Sbjct: 241 FSWFFILLLPQVLGGGKLLLWSLMKESIVSLDILILLLILKSIHTLFSAASDAPGGLFCP 300
Query: 297 SLAIGAIIGKLFVETFGVSNTFVLAGMVGVLSGTLRAPMTGAILMAEITKSPRGFLDFLV 356
SLA+GAIIG + + FV+ GMVGVL+G +AP+T +LM E +P+ L+
Sbjct: 301 SLAMGAIIGSI------LGKKFVVPGMVGVLAGVYKAPLTPILLMFETGVTPKVIPGLLL 354
Query: 357 AGLSSY 362
+ L SY
Sbjct: 355 SSLISY 360
>pir||C82449 conserved hypothetical protein VCA0526 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657932|gb|AAF96429.1|
(AE004383) conserved hypothetical protein [Vibrio
cholerae]
Length = 468
Score = 146 bits (364), Expect = 5e-34
Identities = 115/400 (28%), Positives = 193/400 (47%), Gaps = 56/400 (14%)
Query: 9 IGVLAGVIVGAYKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFS-------YYIISR 61
+G+LAG++ ++ V ++ ++ E L +W+ L S Y+++ R
Sbjct: 40 VGILAGLVGTYFEQAVHLVSETRTDWLKS--EIGSFLPLWLAAFLISAFLAFIGYFLVHR 97
Query: 62 LLNREPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGG 121
P A GI +I+ + G R RV+ K G + AL SG+ LG+ GP++Q+GG
Sbjct: 98 FA---PEAAGSGIPEIEGAMDGMRPVRWWRVLPVKFFGGMGALGSGMVLGREGPTVQMGG 154
Query: 122 SIAMIFSK---------KKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYL 172
++ + S + L+ AGAA GL+AAF AP+AGI+ E +R + I
Sbjct: 155 AVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVIEEMRPQFRYTLISVR 214
Query: 173 AIPSLISALISHYLFPV---RPTLVYTPS----EAKDYQYLILLGVTTGAYSSLFIWLIK 225
A+ +ISA+ ++ +F V + ++ P E +LLG G + LF +LI
Sbjct: 215 AV--IISAVAANIVFRVINGQDAVITMPQYDAPELSTLGLFLLLGALFGVFGVLFNYLIT 272
Query: 226 HIRKIKLIIPFFES----------------WILLPIMPLALGGGHALIFSLFTGNFGITF 269
+ L + F + +LL +P GGG +LI ++ G +G
Sbjct: 273 LAQD--LFVKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTGGGISLIPTITNGGYGAGI 330
Query: 270 LLLLLLLKSIHTILSYTSGAPGGLFLPSLAIGAIIG-------KLFVETFGVS-NTFVLA 321
LLLL + + T+L + SGAPGG+F P LA+G + G K++ + F +A
Sbjct: 331 LLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLIAKMWFPELNIEPGMFAIA 390
Query: 322 GMVGVLSGTLRAPMTGAILMAEITKSPRGFLDFLVAGLSS 361
GM + + T+RAP+TG +L+ E+T + L ++ L +
Sbjct: 391 GMGALFAATVRAPITGILLVIEMTNNYHLILPLIITSLGA 430
>sp|P37019|YADQ_ECOLI HYPOTHETICAL 46.0 KD PROTEIN IN HEML-PFS INTERGENIC REGION
>gi|628807|pir||S45224 voltage-gated chloride channel
protein homolog - Escherichia coli
>gi|473814|dbj|BAA05603.1| (D26562) 'ORF' [Escherichia
coli]
Length = 436
Score = 145 bits (361), Expect = 1e-33
Identities = 110/394 (27%), Positives = 191/394 (47%), Gaps = 44/394 (11%)
Query: 9 IGVLAGVIVGAYKLLVKVIESYYL-SLARNAQERPVLLVIWI----VLTLFSYYIISRLL 63
+G L G+ A+ V +++ + +L A P+LL + VL +F Y+++ +
Sbjct: 5 VGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYA 64
Query: 64 NREPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGGSI 123
P GI +I+ + R RV+ K G L L G+ LG+ GP++Q+GG+I
Sbjct: 65 ---PEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNI 121
Query: 124 AMIF---------SKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAI 174
+ + L+ GAAAGL+AAF AP+AGI+ E +R + I A+
Sbjct: 122 GRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV 181
Query: 175 -PSLISALISHYLFPVRPTLV----YTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRK 229
+I + I + +F L+ + + ++LG+ G + +F + ++
Sbjct: 182 FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQD 241
Query: 230 I--KLIIPFFESWILLP------------IMPLALGGGHALIFSLFTGNFGITFLLLLLL 275
+ ++ W+L+ + P GGG LI GNF + L+ + +
Sbjct: 242 LLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFV 301
Query: 276 LKSIHTILSYTSGAPGGLFLPSLAIGAIIGKLF----VETFG----VSNTFVLAGMVGVL 327
+ I T+L ++SGAPGG+F P LA+G ++G F VE F + TF +AGM +L
Sbjct: 302 ARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALL 361
Query: 328 SGTLRAPMTGAILMAEITKSPRGFLDFLVAGLSS 361
+ ++RAP+TG IL+ E+T + + L ++ GL +
Sbjct: 362 AASIRAPLTGIILVLEMTDNYQLILPMIITGLGA 395
>pir||C64739 yadQ protein - Escherichia coli >gi|1552733|gb|AAB08585.1| (U70214)
similar to voltage-gated chloride channel protein
[Escherichia coli] >gi|1786350|gb|AAC73266.1| (AE000125)
putative channel transporter [Escherichia coli K12]
Length = 473
Score = 145 bits (361), Expect = 1e-33
Identities = 110/394 (27%), Positives = 191/394 (47%), Gaps = 44/394 (11%)
Query: 9 IGVLAGVIVGAYKLLVKVIESYYL-SLARNAQERPVLLVIWI----VLTLFSYYIISRLL 63
+G L G+ A+ V +++ + +L A P+LL + VL +F Y+++ +
Sbjct: 42 VGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYA 101
Query: 64 NREPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGGSI 123
P GI +I+ + R RV+ K G L L G+ LG+ GP++Q+GG+I
Sbjct: 102 ---PEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNI 158
Query: 124 AMIF---------SKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAI 174
+ + L+ GAAAGL+AAF AP+AGI+ E +R + I A+
Sbjct: 159 GRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV 218
Query: 175 -PSLISALISHYLFPVRPTLV----YTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRK 229
+I + I + +F L+ + + ++LG+ G + +F + ++
Sbjct: 219 FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQD 278
Query: 230 I--KLIIPFFESWILLP------------IMPLALGGGHALIFSLFTGNFGITFLLLLLL 275
+ ++ W+L+ + P GGG LI GNF + L+ + +
Sbjct: 279 LLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFV 338
Query: 276 LKSIHTILSYTSGAPGGLFLPSLAIGAIIGKLF----VETFG----VSNTFVLAGMVGVL 327
+ I T+L ++SGAPGG+F P LA+G ++G F VE F + TF +AGM +L
Sbjct: 339 ARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALL 398
Query: 328 SGTLRAPMTGAILMAEITKSPRGFLDFLVAGLSS 361
+ ++RAP+TG IL+ E+T + + L ++ GL +
Sbjct: 399 AASIRAPLTGIILVLEMTDNYQLILPMIITGLGA 432
>pir||S76449 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653666|dbj|BAA18578.1| (D90915) chloride channel
protein [Synechocystis sp.]
Length = 899
Score = 116 bits (288), Expect = 4e-25
Identities = 100/334 (29%), Positives = 160/334 (46%), Gaps = 43/334 (12%)
Query: 72 GGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGGSIAMIFSK-- 129
GGI Q+K ++ RV V K++G +L L G++LG+ P++ +G ++A S+
Sbjct: 96 GGIPQVKAALARYPIPLDWRVAVVKLLGTVLVLGGGMTLGRRAPTVHIGAALAAQLSRWF 155
Query: 130 ------KKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISALIS 183
++ +I AGAAAGL+A F PIAG++ E L +V+ + + S + A+ S
Sbjct: 156 PTSPEHRRQMIAAGAAAGLAAGFTTPIAGVLFVVEELMRDVSSLTLETAIVASFVGAVTS 215
Query: 184 ----------HYLFPVRPTLVYTPSEAKDYQYL-ILLGVTTGAYSSLFIWLIKHIRKIKL 232
+ PT+ +T E Y L IL G+ + + L RK L
Sbjct: 216 LVFQSSDLNLAHSLSNSPTVRFTTGEIPFYLLLGILAGILGVLLNRSILSLQNWQRKQNL 275
Query: 233 IIPFFESWILLPIMPLALGGGHALIFSLFTGNFGITF-----------LLLLLLLKSIHT 281
+ I + ++ L G AL+ S F N G+ ++L L+ I T
Sbjct: 276 SLV-----IRIGVVGLISGVAIALLPSFFRDNAGLREFVTSGELSWHQVVLTLVAHFILT 330
Query: 282 ILSYTSGAPGGLFLPSLAIGAIIGKLFVETFG-------VSNTFVLAGMVGVLSGTLRAP 334
IL+Y++ APGGLF P+L +G+ +G L V FG TF LAGM + +R P
Sbjct: 331 ILAYSTDAPGGLFAPALVMGSALGYL-VGEFGSYWQDQVTQTTFALAGMGAFFTSVVRVP 389
Query: 335 MTGAILMAEITKSPRGFLDFLVAGLSSYATSYAL 368
+T I++ E+T + L +VA +SY + +L
Sbjct: 390 VTAIIIVFELTGNFNVVLPLMVACATSYLVAESL 423
>pir||S74833 hypothetical protein sll0855 - Synechocystis sp. (strain PCC 6803)
>gi|1652876|dbj|BAA17794.1| (D90909) hypothetical
protein [Synechocystis sp.]
Length = 451
Score = 109 bits (269), Expect = 7e-23
Identities = 106/399 (26%), Positives = 180/399 (44%), Gaps = 40/399 (10%)
Query: 7 VKIGVLAGVIVGAYKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFSYYIISR---LL 63
+ +G++ GV+ +K V + + LA+ P L W+V L S +++ L+
Sbjct: 36 IVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLA--WLVTALISGGMVALSFWLM 93
Query: 64 NR-EPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGGS 122
R P+ + GI QI+ + G RV+ K++G L+L +G+ G GP+IQ+GGS
Sbjct: 94 KRFAPDTSGSGIPQIEGHLEGKLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGS 153
Query: 123 IAMIF--------SKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILY--L 172
I + +++LI GA AGL+ AF AP+AG+ E + + Y L
Sbjct: 154 IGQMTGGWFKATQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSL 213
Query: 173 AIPSLISALISHYLFPVRPTLVYTPSEAKDYQYL---ILLGVTTGAYSSLF-IWLIKHIR 228
+++ +I + + T + L I+LG+ G F L K +
Sbjct: 214 LFGCVMATIILRMIRGQSAIISLTEFKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLD 273
Query: 229 KIKLIIPFFESWI---------LLPIMPLAL--GGGHALIFSLFTGNFGITFLLLLLLLK 277
+ P W +L + PL L GG +A++++ F + L+L+ +
Sbjct: 274 WFDRLPPLATKWKGFLLGSIIGILSLFPLPLTDGGDNAVLWA-FNSQSHFSTLILVFCGR 332
Query: 278 SIHTILSYTSGAPGGLFLPSLAIGAIIG--------KLFVETFGVSNTFVLAGMVGVLSG 329
+ T++ Y SGA GG+F P L I +I+ LF +AGM +++
Sbjct: 333 FLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAA 392
Query: 330 TLRAPMTGAILMAEITKSPRGFLDFLVAGLSSYATSYAL 368
T+RAP+T +L E+T + L LV L + + AL
Sbjct: 393 TVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEAL 431
>sp|Q57753|Y305_METJA HYPOTHETICAL PROTEIN MJ0305 >gi|2128226|pir||B64338 hypothetical
protein MJ0305 - Methanococcus jannaschii
>gi|1499089|gb|AAB98292.1| (U67485) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 395
Score = 106 bits (261), Expect = 6e-22
Identities = 107/397 (26%), Positives = 173/397 (42%), Gaps = 47/397 (11%)
Query: 1 MKAYTLVKIGVLAGVIVGAYKLLVKVIESYYLSLARNAQERPVLLV--IWIVLTLFSYYI 58
+K + I L G++ G +++ +I Y+ ++ VLL+ ++ + LF YI
Sbjct: 13 IKIIKWIGIASLIGIVGGLSSVIIAIIIEYF------PEKHNVLLIPIVFFIAGLFVDYI 66
Query: 59 ISRLLNREPNIARGGILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQ 118
+ GI ++ + ++ +R ++ ++ + + G S GK GP +Q
Sbjct: 67 YE--------LKGSGIDRVLKALNTNEKLTWIRGLLKVLLAGAVIAVGG-SAGKEGPCVQ 117
Query: 119 LGGSIA------MIFSKKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILR------IEVTP 166
S A + ++++I G A GL AF AP+ + EI+ I + P
Sbjct: 118 SSASFADELYRLLKLKNRELVIITGIAGGLGGAFSAPLGTAILACEIIEHENFNYINLIP 177
Query: 167 PAILYLAIPSLISALISHYLFPVRPTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLIKH 226
P I+ + LI LI+ TL YT + D+ IL + +I +
Sbjct: 178 P-IIASVVGYLIFYLITGRKHLFNITLSYTIN-IHDFLLFILGAFFCSLIAHCYIKTYRK 235
Query: 227 IR------KIKLIIPFFESWILLPIM----PLALGGGHALIFSLFTGNFGITFLLLLLLL 276
I KI I IL+ ++ P +G G L LF F + FL+LLL+
Sbjct: 236 ISSTFDNLKIPYCIKTLIGGILVAVISYFIPEVMGMGLTLTKELFIMEFSLVFLVLLLIG 295
Query: 277 KSIHTILSYTSGAPGGLFLPSLAIGAIIGKLFVETFG-VSNTFVLAGMVGVLSGTLRAPM 335
K + T + SG PGGL PS+ IGAI G +F G S +++ G+ LS T AP+
Sbjct: 296 KILATSFTVGSGTPGGLVFPSMCIGAISGIIFGSLIGDCSAPYIVLGIATTLSATTNAPL 355
Query: 336 TGAILMAEITKSPRGFLDFLVAGLSSYATSYALKKVK 372
GA+L EI GF DF V Y + K++
Sbjct: 356 GGAVLCTEIF----GF-DFAVPASIGAVIGYQMTKLE 387
>dbj|BAA15316.1| (D90801) ORF_ID:o311#6; similar to [SwissProt Accession Number
P37019] [Escherichia coli] >gi|1742626|dbj|BAA15326.1|
(D90802) ORF_ID:o311#6; similar to [SwissProt Accession
Number P37019] [Escherichia coli]
Length = 430
Score = 102 bits (252), Expect = 7e-21
Identities = 95/410 (23%), Positives = 171/410 (41%), Gaps = 53/410 (12%)
Query: 20 YKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFSYYIISRLLNREP----------NI 69
++LL+ + + A +LL+ W+ L S +++ N P +
Sbjct: 15 HRLLIATVVGILAAFAVAGFRHAMLLLEWLFLNNDSGSLVNAATNLSPWRRLLTPALGGL 74
Query: 70 ARGGILQIKEVISGTRDYNPVRVIVG--------------KIIGHLLALISGLSLGKAGP 115
A G +L + + R + P + K + LL + SG ++G+ G
Sbjct: 75 AAGLLLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGA 134
Query: 116 SIQLGGSIAMIFSKK-------KVLIGAGAAAGLSAAFEAPIAGIVSTFEIL----RIEV 164
I L A F+++ K+ I GAAAG++AA+ AP+AG + E+L +
Sbjct: 135 MILLAALAASCFAQRFTPRQEWKLWIACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLAS 194
Query: 165 TPPAILYLAIPSLISALISHYLFPVRPTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLI 224
P I+ + L+S LI+H + + +A+DY +I GV G L + L+
Sbjct: 195 LGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLM 254
Query: 225 KHIRKIKLIIPFFESW----------ILLPIMPLALGGGHALIFSLFTGNFGITFLLLLL 274
+ + + W +L P G G++ + S T + + +
Sbjct: 255 NACHRGFVSLKLAPPWQLALGGLIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIF 314
Query: 275 LLKSIHTILSYTSGAPGGLFLPSLAIGAIIGKLFVETFG--------VSNTFVLAGMVGV 326
L K + S SGAPGG+F P+L IG IG L+ + G ++ L GM +
Sbjct: 315 LCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTGMATL 374
Query: 327 LSGTLRAPMTGAILMAEITKSPRGFLDFLVAGLSSYATSYALKKVKLQKR 376
L+ T AP+ +++ E+T + L+A + + S L + + ++
Sbjct: 375 LAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLHRDSIYRQ 424
>pir||B64915 probable membrane protein b1592 - Escherichia coli
>gi|1787876|gb|AAC74664.1| (AE000255) putative chloride
channel [Escherichia coli K12]
Length = 438
Score = 102 bits (252), Expect = 7e-21
Identities = 95/410 (23%), Positives = 171/410 (41%), Gaps = 53/410 (12%)
Query: 20 YKLLVKVIESYYLSLARNAQERPVLLVIWIVLTLFSYYIISRLLNREP----------NI 69
++LL+ + + A +LL+ W+ L S +++ N P +
Sbjct: 23 HRLLIATVVGILAAFAVAGFRHAMLLLEWLFLNNDSGSLVNAATNLSPWRRLLTPALGGL 82
Query: 70 ARGGILQIKEVISGTRDYNPVRVIVG--------------KIIGHLLALISGLSLGKAGP 115
A G +L + + R + P + K + LL + SG ++G+ G
Sbjct: 83 AAGLLLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGA 142
Query: 116 SIQLGGSIAMIFSKK-------KVLIGAGAAAGLSAAFEAPIAGIVSTFEIL----RIEV 164
I L A F+++ K+ I GAAAG++AA+ AP+AG + E+L +
Sbjct: 143 MILLAALAASCFAQRFTPRQEWKLWIACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLAS 202
Query: 165 TPPAILYLAIPSLISALISHYLFPVRPTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLI 224
P I+ + L+S LI+H + + +A+DY +I GV G L + L+
Sbjct: 203 LGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLM 262
Query: 225 KHIRKIKLIIPFFESW----------ILLPIMPLALGGGHALIFSLFTGNFGITFLLLLL 274
+ + + W +L P G G++ + S T + + +
Sbjct: 263 NACHRGFVSLKLAPPWQLALGGLIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIF 322
Query: 275 LLKSIHTILSYTSGAPGGLFLPSLAIGAIIGKLFVETFG--------VSNTFVLAGMVGV 326
L K + S SGAPGG+F P+L IG IG L+ + G ++ L GM +
Sbjct: 323 LCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTGMATL 382
Query: 327 LSGTLRAPMTGAILMAEITKSPRGFLDFLVAGLSSYATSYALKKVKLQKR 376
L+ T AP+ +++ E+T + L+A + + S L + + ++
Sbjct: 383 LAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLHRDSIYRQ 432
>gb|AAG19829.1| (AE005067) chloride channel; Clc [Halobacterium sp. NRC-1]
Length = 792
Score = 97.9 bits (240), Expect = 2e-19
Identities = 79/335 (23%), Positives = 145/335 (42%), Gaps = 47/335 (14%)
Query: 58 IISRLLNREPNIARG-GILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPS 116
I+ ++ R RG G+ ++ E + ++ V K + +A+ SG SLG+ GP
Sbjct: 251 IVGLVIRRTTTAIRGHGVPEVLESLMVHNGQIDPKIAVYKTVSSSIAIASGASLGREGPI 310
Query: 117 IQLGGSIAMIFSK------KKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAIL 170
+Q+G + F + L+ AGA +G++A F P+AG++ EIL E ++
Sbjct: 311 VQIGSAAGSYFGAFVHSRYTRTLVAAGAGSGIAATFNTPLAGVMFALEILLSEYALTNVV 370
Query: 171 YLAIPSLISALISH-------------YLFPVRPTLVYTPSEAKDYQYLILLGVTTGAYS 217
+ + ++ + ++ +L P+ +V E Y L ++ GA
Sbjct: 371 TVVLSAVTATAVARSVLAFTAVPGVREFLVPITYHIVTPSLEFPLYAGLGVVAAGIGAAV 430
Query: 218 SLFIWLIKHIRKIKLIIPFFES---------------WILLPIMPLA-----LGGGHALI 257
++ +H+ + + +P + + +LL PL G G+ I
Sbjct: 431 VRLLYASEHLFQDRWDLPGYLTPAIGGALLGVSVLLTAVLLDASPLQSATWLFGVGYGTI 490
Query: 258 FSLFTGNFGITFLLLLLLLKSIHTILSYTSGAPGGLFLPSLAIGAIIGKLFVETFGV--- 314
S G+ + L+ L +LK + LS SG GG+F P+L +GA+ G F
Sbjct: 491 HSSIAGDLTLLVLVALAVLKVVGFSLSIGSGNSGGVFSPTLYVGAMAGGAFGVLVNAAFA 550
Query: 315 ----SNTFVLAGMVGVLSGTLRAPMTGAILMAEIT 345
+ + L G GV + T AP+T +++ E+T
Sbjct: 551 GTASAGAYALVGTAGVFAATASAPLTATLIIFELT 585
>gb|AAF79509.1|AC002328_17 (AC002328) F20N2.5 [Arabidopsis thaliana]
Length = 784
Score = 90.1 bits (220), Expect = 4e-17
Identities = 98/327 (29%), Positives = 140/327 (41%), Gaps = 60/327 (18%)
Query: 96 KIIGHLLALISGLSLGKAGPSIQLGGSIAMIFS--------KKKVLIGAGAAAGLSAAFE 147
K I + L +G SLG GPS+ +G S A F+ ++ L AGAA+G+++ F
Sbjct: 230 KAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFALMMENNRERRIALTAAGAASGIASGFN 289
Query: 148 APIAGIVSTFEI----LRIEVTPP---AILYLAIPSLISALISHYLFPVRPTLV---YTP 197
A +AG E LR E +PP A++ LA S+IS+ +S+ L + Y
Sbjct: 290 AAVAGCFFAIETVLRPLRAENSPPFTTAMIILA--SVISSTVSNALLGTQSAFTVPSYDL 347
Query: 198 SEAKDYQYLILLGVTTGAYSSLFIWLIKHIRKIKLIIPFFESWILLP-IMPLALGGGHAL 256
A + ++LG+ GA S +F L+ K F + LP I+ ALGG A
Sbjct: 348 KSAAELPLYLILGMLCGAVSVVFSRLVTWFTKS---FDFIKDKFGLPAIVCPALGGLGAG 404
Query: 257 IFSL-----------------FTGNF----GITFLLLLLLLKSIHTILSYTSGAPGGLFL 295
I +L TG GI L L K + T L SG GGL+
Sbjct: 405 IIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYA 464
Query: 296 PSLAIGAIIGKLF--------------VETFGVSNTFVLAGMVGVLSGTLRAPMTGAILM 341
PSL IGA +G +F + L GM L+ P+T +L+
Sbjct: 465 PSLMIGAAVGAVFGGSAAEIINRAIPGNAAVAQPQAYALVGMAATLASMCSVPLTSVLLL 524
Query: 342 AEITKSPRGFLDFLVA-GLSSYATSYA 367
E+TK R L + A GL+ + S A
Sbjct: 525 FELTKDYRILLPLMGAVGLAIWVPSVA 551
>gi|11499010 chloride channel, putative [Archaeoglobus fulgidus]
>gi|7482945|pir||F69426 chloride channel, probable,
homolog - Archaeoglobus fulgidus
>gi|2649157|gb|AAB89832.1| (AE001006) chloride channel,
putative [Archaeoglobus fulgidus]
Length = 589
Score = 89.7 bits (219), Expect = 5e-17
Identities = 68/292 (23%), Positives = 127/292 (43%), Gaps = 38/292 (13%)
Query: 91 RVIVGKIIGHLLALISGLSLGKAGPSIQLG-------GSIAMIFSK-KKVLIGAGAAAGL 142
RV + K I + + SG S G+ GP Q+G G + + K +++L+ G A G+
Sbjct: 115 RVPIVKTIASAITIGSGGSAGREGPIAQIGAGFGSFVGELLRLSDKDRRILVICGVAGGI 174
Query: 143 SAAFEAPIAGIVSTFEIL-----RIEVTPPAILYLAIPSLISALISHY----------LF 187
+ F +P G + E+L +E PA + + ++ +I Y +F
Sbjct: 175 GSIFRSPFGGAMFGIEVLYKRDNEVEAIVPAFVSSIVAFIVFDVIMSYFANTPFGVLPIF 234
Query: 188 PVRPTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRKIKLIIPFFE-------SW 240
+ +++P E Y + +L G + + + K I P+F+ +
Sbjct: 235 KIPQVTIHSPLEFPIYAIVSVLAAFFGIIYVKVFYTVHNYSKRVSIPPYFKPAIGGFFTG 294
Query: 241 ILLPIMPLALGGGHALIFSLFTGNFGITFLLLLLLLKSIHTILSYTSGAPGGLFLPSLAI 300
++ +P LG G+ + G +T +LLL+ K + T L+ +G GG+F PS+ I
Sbjct: 295 VIGLFLPGVLGMGYGYVQMAIDGKLAVTVMLLLIFGKIVATSLTVGTGGSGGVFAPSIVI 354
Query: 301 GAIIG--------KLFVETFGVSNTFVLAGMVGVLSGTLRAPMTGAILMAEI 344
G+++G LF FVL GM ++ + P+ +++ E+
Sbjct: 355 GSMVGGFVGYSFHYLFPNVIVQPEAFVLIGMSAFVAAVAKTPIAAILMVLEM 406
>gb|AAK43299.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 595
Score = 84.3 bits (205), Expect = 2e-15
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 44/315 (13%)
Query: 92 VIVGKIIGHLLALISGLSLGKAGPSIQLGGSIAMIFSK--------KKVLIGAGAAAGLS 143
VI KII + + SG S G+ GP+ Q + + + ++ + G AG+
Sbjct: 130 VIPVKIIASAITIGSGGSAGREGPTAQFSAGVGSVIADLLHLSPEDRRRAVAVGIGAGIG 189
Query: 144 AAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISALISHYLF-------PVRP--TLV 194
F+ PI G + EIL P ++Y P+LI++ I + +F PV T
Sbjct: 190 TIFKTPIGGAILAAEILYRRDLEPEVIY---PALIASAIGYTIFGSIFGFTPVFGYYTGT 246
Query: 195 YTPSEAKDYQYLILL-GVTTGAYSSLFIWLIKHIRKIKLI------IPFFESWILLPIMP 247
+ P Y L L+ G+ Y F + +K+++ I + ++ + P
Sbjct: 247 FDPLRLPMYAVLGLVSGLVAILYPKTFYGINSLFKKLRITDHVKPAIGGLVTGVIALLAP 306
Query: 248 LALGGGHALI--------FSLFTGNFGITFLLLLL-LLKSIHTILSYTSGAPGGLFLPSL 298
LG G+ I F+L++ L+++L LK I T S SG GG+F P L
Sbjct: 307 EILGTGYGWINLVEYEKFFALYSPVLPAIILIVILPFLKIIATSFSVGSGGSGGVFAPGL 366
Query: 299 AIGAIIGK--------LFVETFGVSNTFVLAGMVGVLSGTLRAPMTGAILMAEITKSPRG 350
IGA IG LF FV+ GM+ +G + P++ I++ E+T S +
Sbjct: 367 FIGAYIGASIGLMFHYLFPSVVPDIAPFVIIGMMSFFAGAGKVPLSVLIMVTEMTSSLQL 426
Query: 351 FLDFLVAGLSSYATS 365
+VA SY S
Sbjct: 427 LPGAMVAVAISYLVS 441
>gb|AAF49542.1| (AE003528) CG5284 gene product [Drosophila melanogaster]
Length = 732
Score = 84.3 bits (205), Expect = 2e-15
Identities = 98/386 (25%), Positives = 163/386 (41%), Gaps = 77/386 (19%)
Query: 34 LARNAQERPVLLVIWIVLTLFSYYIISRLLNR--EPNIARGGILQIKEVISG--TRDYNP 89
L RN ++ IW VL + +S L R P GI +IK ++SG R Y
Sbjct: 150 LDRNGTGPYIVAYIWYVLWALLFASLSASLVRMFAPYACGSGIPEIKTILSGFIIRGYLG 209
Query: 90 VRVIVGKIIGHLLALISGLSLGKAGPSIQLGGSIAMIFS-----------KKKVLIGAGA 138
++ K +G +L++ +GL+LGK GP + + I IFS KK+ ++ A A
Sbjct: 210 KWTLLIKSVGLMLSVSAGLTLGKEGPMVHIASCIGNIFSHVFPKYGRNEAKKREILSAAA 269
Query: 139 AAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISALISHYLFPV--RPTLVYT 196
AAG+S AF API G++ + E + + +LI+A + L P ++++
Sbjct: 270 AAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSLTPFGNEHSVLFF 329
Query: 197 PSEAKDYQY-----LILLGVTTGAYSSLFI----WLIKHIRKIK---------LIIPFFE 238
K + + + LG+ G + FI W ++ + K L +
Sbjct: 330 VEYNKPWIFFELIPFVFLGIMGGVIGTFFIKANLWWCRYRKFSKLGQYPVMEVLFVTLVT 389
Query: 239 SWILLPIMPLALGGGHALIF---------------------SLFTGN------------- 264
+ I P P + LIF ++ +GN
Sbjct: 390 AIICYP-NPFTRMNMNELIFLLVSKCSPGDVTNPLCDYKRMNITSGNSFIEVTEPGPGVY 448
Query: 265 FGITFLLLLLLLKSIHTILSYTSGAPGGLFLPSLAIGAIIGKLF---VETFGVS--NTFV 319
I L+L +LK TI ++ P GLF+PSL +GAI+G++ VE F S N +
Sbjct: 449 SSIWLLMLTFILKLALTIFTFGMKVPAGLFIPSLLLGAIMGRIVGIGVEQFAYSYPNIWF 508
Query: 320 LAGMVGVLSGTLR--APMTGAILMAE 343
++ L+G +R P+ A + ++
Sbjct: 509 FTVIMFELTGGVRYIVPLMAAAMASK 534
>pir||T39817 hypothetical protein SPBC19C7.11 - fission yeast
(Schizosaccharomyces pombe) >gi|3218415|emb|CAA19579.1|
(AL023859) chloride channel [Schizosaccharomyces pombe]
Length = 812
Score = 83.9 bits (204), Expect = 3e-15
Identities = 106/404 (26%), Positives = 173/404 (42%), Gaps = 106/404 (26%)
Query: 48 WIVLTLFS--YYIISRLLNRE--PNIARGGILQIKEVISG-TRD-YNPVRVIVGKIIGHL 101
+++ T F+ + + + ++ R+ P A GI +IK +ISG RD + RV++ K +G
Sbjct: 180 YLIYTAFALLFVLCAAIMVRDVAPLAAGSGISEIKCIISGFLRDSFLSFRVMLVKCVGLP 239
Query: 102 LALISGLSLGKAGPSIQL----GGSIAMIFS-------KKKVLIGAGAAAGLSAAFEAPI 150
LA+ SGLS+GK GPS+ L G +I+ IF + + + A AA+G++ AF +PI
Sbjct: 240 LAIASGLSVGKEGPSVHLATTIGHNISKIFKYAREGSIRYRDICVASAASGVAVAFGSPI 299
Query: 151 AGIVSTFEILR-IEV------------TPPAILYLAIPSLISALISHYLFPVRPTLV--- 194
G++ E+ + IE+ P I+Y L + + H L P R V
Sbjct: 300 GGVLFGIEVGKFIEILTNSFKEMSGGYDPKMIVYSFFCCLSAVGVLHMLNPFRTGQVVLF 359
Query: 195 ---YTPS----EAKDYQYLILLGVTTGAYSSLFIWLIKHIRK----------------IK 231
Y+ S E + +L + G G + +LI+ +RK I
Sbjct: 360 EVRYSGSWHFFELLFFCFLGIFGGLYGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVIT 419
Query: 232 LIIPFFESWILLPIMPLALGGGHALIF-----------------SLFTGNFGITFLLLLL 274
++ F W+ L + G L+F SL T N LL+
Sbjct: 420 SLVSFLNPWLRLDMTL-----GMELLFQECKSSSSPELINLCDPSLRTKN--TILLLIAT 472
Query: 275 LLKSIHTILSYTSGAPGGLFLPSLAIGAIIG-----------------KLFVETFG---- 313
++I SY + P G+F+PS+A+GA G LF+ G
Sbjct: 473 FARTIFVTFSYGAKVPAGIFVPSMAVGASFGYMIGLIAEMIYQRFPNSVLFLACHGSESC 532
Query: 314 -VSNTFVLAGMVGVLSGTLRAPMTGAILMAEITKSPRGFLDFLV 356
T+ L G LSG + +T ++M E+T G L+F++
Sbjct: 533 ITPGTYALLGAAASLSGIMHLTVTIVVIMFELT----GALNFIL 572
>emb|CAC12582.1| (AL445067) chloride channel (CLC-3) related protein [Thermoplasma
acidophilum]
Length = 589
Score = 73.7 bits (178), Expect = 3e-12
Identities = 77/316 (24%), Positives = 137/316 (42%), Gaps = 44/316 (13%)
Query: 91 RVIVGKIIGHLLALISGLSLGKAGPSIQ----LGGSIAMIF----SKKKVLIGAGAAAGL 142
R+ V K I + + SG S G+ GP+ Q LG +A + S +++ + G +G+
Sbjct: 120 RIPVVKTIASAITIGSGGSAGREGPTAQISAGLGSMVADLLGLSDSDRRIAVAVGIGSGI 179
Query: 143 SAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISALISHYLFP----VRPTL-VYTP 197
F+ PI G + EIL +Y PSL++ I + +F P YT
Sbjct: 180 GTIFKTPIGGTMLGAEILYKRDLETQAIY---PSLVANAIGYSIFASVVGFEPIFGYYTG 236
Query: 198 S-EAKDYQYLILLGVTTGA----YSSLFIWLIKHIRKIKL------IIPFFESWILLPIM 246
S + Y +LGV +G Y F +++ +++++ +I + ++
Sbjct: 237 SFNVERIPYYAILGVISGLFAIFYVRFFYFMVSVFKRMRISNYYKPVIGGAVTGLIALAF 296
Query: 247 PLALGGGHA----LIFSLFT--GNFGITFLLLLLLL---KSIHTILSYTSGAPGGLFLPS 297
P + G+ L+F F FGI L++L+ L K T + SG GG++ P
Sbjct: 297 PEIMSTGYGWVDLLMFQKFQYFPTFGIPILIILIALPFVKVFATSFTVGSGGSGGVYAPG 356
Query: 298 LAIGAIIGKLFVETF--------GVSNTFVLAGMVGVLSGTLRAPMTGAILMAEITKSPR 349
+ IGA +G + F + FV+ GM+ + P++ +++ E+T S +
Sbjct: 357 IFIGASLGAVAGLAFHYATPSLVPIITPFVIVGMISFFGAAGKVPLSVILMVVEMTGSLQ 416
Query: 350 GFLDFLVAGLSSYATS 365
++A SY S
Sbjct: 417 LLPAAMIAVFISYLVS 432
>gb|AAD53928.1|AF179611_12 (AF179611) chloride channel protein [Zymomonas mobilis]
Length = 425
Score = 70.2 bits (169), Expect = 4e-11
Identities = 71/328 (21%), Positives = 137/328 (41%), Gaps = 33/328 (10%)
Query: 74 ILQIKEVISGTRDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGGSIAMIFS----- 128
++ I + ++ + P + ++ ++ + G LG+ +LG I F+
Sbjct: 85 LVSITQAVAANKRVMPFWTTIIHVLLQIVTVGLGSPLGREVAPRELGSLIGERFAFWGGL 144
Query: 129 ---KKKVLIGAGAAAGLSAAFEAPIAGIVSTFEILRIEVTPPAILYLAIPSLISALISHY 185
++++L+ GA AG ++ + P++G + E L + P ++ + S +SA ++
Sbjct: 145 SENQRRILVACGAGAGFASVYNVPLSGALFALEALLMTWASPVVIVALLTSALSARMAWI 204
Query: 186 LFPVRPTLVYT----PSEAKDYQYLILLGVTTGAYSSLF-IWL-------IKHIRKIKL- 232
L + ++VY P + + +L G G + F W IK R++ L
Sbjct: 205 L--LGNSMVYHVPAWPVDTRLMLLALLAGPIFGIAAHYFRFWSQKITASRIKDNRRLALV 262
Query: 233 -IIPFFESWILLPIMPLALGGGHALIFSLFTGNFGITFLLLLLLLKSIHTILSYTSGAPG 291
I+ F +L P LG G + F N L K + L+ +GA G
Sbjct: 263 AILCFAAIGLLSMWFPEILGNGKGPVSLAFNDNLSGMKAGELFCFKILAVFLALWAGAYG 322
Query: 292 GLFLPSLAIGAIIGKLFVETFGV------SNTFVLAGMVGVLSGTLRAPMTGAILMAEIT 345
GL P ++ GA++ + + + F + G L+ +++ P+T L+ E
Sbjct: 323 GLLTPGISFGALLAVVIGHLWNMWLPPVPIGAFAIIGGAAFLASSMKMPITAMALVIEFA 382
Query: 346 KSPRGFL---DFLVAGLSSYATSYALKK 370
++ FL F VAG + + Y KK
Sbjct: 383 RTGHDFLIPIAFAVAGSIAISQFYDQKK 410
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.144 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134568336
Number of Sequences: 2977
Number of extensions: 5836014
Number of successful extensions: 19534
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 19461
Number of HSP's gapped (non-prelim): 25
length of query: 379
length of database: 189,106,746
effective HSP length: 55
effective length of query: 324
effective length of database: 156,189,961
effective search space: 50605547364
effective search space used: 50605547364
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 166 (69.1 bits)