BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2015 (PAB2015) DE:Hypothetical protein
         (477 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75170 hypothetical protein PAB2015 - Pyrococcus abyssi (st...   971  0.0
pir||H71044 hypothetical protein PH1648 - Pyrococcus horikoshii ...   797  0.0
gb|AAK43320.1| Conserved hypothetical protein [Sulfolobus solfat...   121  2e-26
pir||E72776 hypothetical protein APE0199 - Aeropyrum pernix (str...   120  4e-26

>pir||B75170 hypothetical protein PAB2015 - Pyrococcus abyssi (strain Orsay)
           >gi|5457951|emb|CAB49441.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 477
           
 Score =  971 bits (2482), Expect = 0.0
 Identities = 477/477 (100%), Positives = 477/477 (100%)

Query: 1   MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL 60
           MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL
Sbjct: 1   MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL 60

Query: 61  GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS 120
           GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS
Sbjct: 61  GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS 120

Query: 121 YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA 180
           YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA
Sbjct: 121 YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA 180

Query: 181 LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV 240
           LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV
Sbjct: 181 LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV 240

Query: 241 AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY 300
           AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY
Sbjct: 241 AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY 300

Query: 301 LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK 360
           LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK
Sbjct: 301 LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK 360

Query: 361 PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG 420
           PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG
Sbjct: 361 PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG 420

Query: 421 GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR 477
           GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR
Sbjct: 421 GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR 477


>pir||H71044 hypothetical protein PH1648 - Pyrococcus horikoshii
           >gi|3258077|dbj|BAA30760.1| (AP000006) 473aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 473
           
 Score =  797 bits (2035), Expect = 0.0
 Identities = 368/477 (77%), Positives = 425/477 (88%), Gaps = 4/477 (0%)

Query: 1   MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL 60
           M+KEA+LNDYMGDEVWYV +TRN+L++LGI   Y++N S GVN+FLKEPLYVGKV +   
Sbjct: 1   MIKEARLNDYMGDEVWYVPATRNMLNMLGIRTHYIDNNSTGVNIFLKEPLYVGKVVINIY 60

Query: 61  GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS 120
           GI +EK VRE P+IPE   KLG+ +EY PFNYT+NES WE+LKL+IWE+AERN F+EY +
Sbjct: 61  GIKIEKSVREYPKIPELVRKLGINIEYLPFNYTKNESYWENLKLKIWEIAERNGFLEYET 120

Query: 121 YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA 180
           YS FPGV+Y IPVENY+ F +EL    +I ++PGYKYPDEENIHKYLNTEHPFLGKD+IA
Sbjct: 121 YSKFPGVYYVIPVENYERFMKELSNFSDIVVVPGYKYPDEENIHKYLNTEHPFLGKDLIA 180

Query: 181 LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV 240
           LGML  DKP YWR+PGIIEHALIV+IV  V+YKI +SYLA+ I+ATF ALDPLLFATGIV
Sbjct: 181 LGMLANDKPLYWRLPGIIEHALIVLIVAFVSYKIARSYLATLISATFVALDPLLFATGIV 240

Query: 241 AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY 300
           AMLDIHVAFF+ALFMLFL + R+R+SGI+LGLAAATKLSGAF FPILW KILKE+DLKE+
Sbjct: 241 AMLDIHVAFFVALFMLFLTIRRLRISGISLGLAAATKLSGAFVFPILWAKILKEEDLKEF 300

Query: 301 LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK 360
           +ISG+VLP+++FL+PEI IIKAIGFIPWLEEF+ SFSWHLSFKGEHP+EAPFW+WF+SLK
Sbjct: 301 IISGVVLPVIAFLVPEIPIIKAIGFIPWLEEFMGSFSWHLSFKGEHPAEAPFWLWFISLK 360

Query: 361 PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG 420
           PFPFHF+PDVYAVTDPILMISMI F+FAVPYVSLRRKGL EIFWMFWSII FFALQYILG
Sbjct: 361 PFPFHFNPDVYAVTDPILMISMIAFIFAVPYVSLRRKGLGEIFWMFWSIIGFFALQYILG 420

Query: 421 GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR 477
           GKTQFIFYATPL+PPGAVALGVISYEIIKWEYFERS++IY+NYLRS    LK+ IKR
Sbjct: 421 GKTQFIFYATPLVPPGAVALGVISYEIIKWEYFERSVKIYMNYLRS----LKEFIKR 473


>gb|AAK43320.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 372
           
 Score =  121 bits (300), Expect = 2e-26
 Identities = 89/291 (30%), Positives = 149/291 (50%), Gaps = 18/291 (6%)

Query: 157 YPDEENIHKYLNTEHPFLGKDIIALGM-LIEDKPFYWRIPGIIEHALIVIIVTLVAYKIT 215
           YP+E+NI  Y+N EHP L K I+A+ +  +   P  WRIP  I   L++I+   +  K+ 
Sbjct: 66  YPNEQNIQTYINPEHPPLAKYIMAVFIYFVGYYPIVWRIPSWILGDLMLIVGYFLGKKLV 125

Query: 216 KS----YLASSIAATFAALDPLLFATGIVAMLDIHVAFFIALFMLFLALDRIRLSGIALG 271
            +     LA  + A   ALDP +++   +A+LDI+V+FF  L + FL  D+   + IAL 
Sbjct: 126 SNGILGNLAGILTALLIALDPNVWSLHGIALLDIYVSFFSFLSLYFLLNDKPLWASIALA 185

Query: 272 LAAATKLSG-AFAFPILWFKILKEKDLKEYLISGLVLPMVSFLIPEITIIKAIGFI-PWL 329
           LA  +K S     FP L++      ++K+  I G+ +P + +++    +I   G I  WL
Sbjct: 186 LAMLSKESAYVLIFPFLYYLGEISNNVKKRAIYGIGIPALIYILFSTPLIAYYGGIKAWL 245

Query: 330 EEFIASFS-W-----HLSFKGEHPSEAPFWMWFVSLKPFPFHFDPDVYAVTDPILMISMI 383
           +  I   + W     H++         P W WF+++   PF+   ++YA T+P ++I  I
Sbjct: 246 DATIIHRALWDVTNGHITLTATSQISTP-WDWFLNI--HPFYLGYNLYASTNPYVLILWI 302

Query: 384 VFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILGGKTQFIFYATPLIP 434
           +    + ++    K ++   W  W++   F + YILG  T F FY T  +P
Sbjct: 303 I-TTPLAFIFRDSKLITTTMWA-WTMWIGFVIVYILGNHTLFSFYVTDFMP 351


>pir||E72776 hypothetical protein APE0199 - Aeropyrum pernix (strain K1)
           >gi|5103590|dbj|BAA79111.1| (AP000058) 418aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 418
           
 Score =  120 bits (298), Expect = 4e-26
 Identities = 89/309 (28%), Positives = 147/309 (46%), Gaps = 33/309 (10%)

Query: 166 YLNTEHPFLGKDIIALGMLI-EDKPFYWRIPGIIEHALIVIIV---TLVAYKITKSYLAS 221
           Y N EHP LGK IIAL ML+  D+P  WR+P ++E  LI +I+     +AY+     +A 
Sbjct: 94  YYNAEHPPLGKYIIALSMLLCGDRPLCWRLPSVVEAGLIPVILWAGLALAYRGVLGPVAG 153

Query: 222 SIAATFAALDPLLFATGIVAMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSG- 280
           + AA  AA DP+L   G VAMLDIH AFF AL +   A  R   +  A GLAA+ K+SG 
Sbjct: 154 AAAALAAASDPVLRVMGSVAMLDIHQAFFTALAIALAANRRFIPAISAAGLAASVKMSGG 213

Query: 281 -----------AFAFPILWFKILKEKDLKEYLISGLVLPMVSFLIPEITIIKAIGFIPWL 329
                      ++A   +W ++           +GL++    ++     ++   G +  +
Sbjct: 214 AIVLATATVAASWAQGSIWRRL-------AVFTAGLLIGGSVYIALYAPLVLHFGPMWVI 266

Query: 330 EEFIASFSWHLSFKGEHPSEAPFWMWFVSLKPFPFHFDPDVY-AVTDPILMISMIVFVFA 388
           EE I +  WH + +   P  +    W ++  PF    +  V  AVT+ ++  + + F   
Sbjct: 267 EETINALKWHTTSRPPGPPASSVLGWIINSNPFYLSLEGRVMAAVTNTVVHATALGFAAI 326

Query: 389 VPYVSLRRK-------GLSEIFWMFWSIIAFFALQYILGGKTQFIFYATPLIPPGAVALG 441
                L  +       G++ ++ +F  I+  +   Y+ G +T + FY+  L P  A  +G
Sbjct: 327 ALLAELLERRGRPSWPGVAHVYMLF--ILILYTAVYLAGNRTLYSFYSVQLTPIAAAVIG 384

Query: 442 VISYEIIKW 450
             +  ++ W
Sbjct: 385 EATAAMLTW 393


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.144    0.445 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185901218
Number of Sequences: 2977
Number of extensions: 8434600
Number of successful extensions: 24530
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24516
Number of HSP's gapped (non-prelim): 7
length of query: 477
length of database: 189,106,746
effective HSP length: 51
effective length of query: 426
effective length of database: 158,583,909
effective search space: 67556745234
effective search space used: 67556745234
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 167 (69.5 bits)