BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2015 (PAB2015) DE:Hypothetical protein
(477 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75170 hypothetical protein PAB2015 - Pyrococcus abyssi (st... 971 0.0
pir||H71044 hypothetical protein PH1648 - Pyrococcus horikoshii ... 797 0.0
gb|AAK43320.1| Conserved hypothetical protein [Sulfolobus solfat... 121 2e-26
pir||E72776 hypothetical protein APE0199 - Aeropyrum pernix (str... 120 4e-26
>pir||B75170 hypothetical protein PAB2015 - Pyrococcus abyssi (strain Orsay)
>gi|5457951|emb|CAB49441.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 477
Score = 971 bits (2482), Expect = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%)
Query: 1 MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL 60
MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL
Sbjct: 1 MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL 60
Query: 61 GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS 120
GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS
Sbjct: 61 GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS 120
Query: 121 YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA 180
YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA
Sbjct: 121 YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA 180
Query: 181 LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV 240
LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV
Sbjct: 181 LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV 240
Query: 241 AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY 300
AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY
Sbjct: 241 AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY 300
Query: 301 LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK 360
LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK
Sbjct: 301 LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK 360
Query: 361 PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG 420
PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG
Sbjct: 361 PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG 420
Query: 421 GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR 477
GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR
Sbjct: 421 GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR 477
>pir||H71044 hypothetical protein PH1648 - Pyrococcus horikoshii
>gi|3258077|dbj|BAA30760.1| (AP000006) 473aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 473
Score = 797 bits (2035), Expect = 0.0
Identities = 368/477 (77%), Positives = 425/477 (88%), Gaps = 4/477 (0%)
Query: 1 MVKEAKLNDYMGDEVWYVSSTRNILHLLGINVSYVENGSVGVNVFLKEPLYVGKVRVKFL 60
M+KEA+LNDYMGDEVWYV +TRN+L++LGI Y++N S GVN+FLKEPLYVGKV +
Sbjct: 1 MIKEARLNDYMGDEVWYVPATRNMLNMLGIRTHYIDNNSTGVNIFLKEPLYVGKVVINIY 60
Query: 61 GITLEKPVREAPQIPEFAEKLGVTVEYYPFNYTRNESQWEDLKLRIWEVAERNSFVEYYS 120
GI +EK VRE P+IPE KLG+ +EY PFNYT+NES WE+LKL+IWE+AERN F+EY +
Sbjct: 61 GIKIEKSVREYPKIPELVRKLGINIEYLPFNYTKNESYWENLKLKIWEIAERNGFLEYET 120
Query: 121 YSNFPGVFYRIPVENYKNFTEELREIGNITIIPGYKYPDEENIHKYLNTEHPFLGKDIIA 180
YS FPGV+Y IPVENY+ F +EL +I ++PGYKYPDEENIHKYLNTEHPFLGKD+IA
Sbjct: 121 YSKFPGVYYVIPVENYERFMKELSNFSDIVVVPGYKYPDEENIHKYLNTEHPFLGKDLIA 180
Query: 181 LGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIV 240
LGML DKP YWR+PGIIEHALIV+IV V+YKI +SYLA+ I+ATF ALDPLLFATGIV
Sbjct: 181 LGMLANDKPLYWRLPGIIEHALIVLIVAFVSYKIARSYLATLISATFVALDPLLFATGIV 240
Query: 241 AMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEY 300
AMLDIHVAFF+ALFMLFL + R+R+SGI+LGLAAATKLSGAF FPILW KILKE+DLKE+
Sbjct: 241 AMLDIHVAFFVALFMLFLTIRRLRISGISLGLAAATKLSGAFVFPILWAKILKEEDLKEF 300
Query: 301 LISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPFWMWFVSLK 360
+ISG+VLP+++FL+PEI IIKAIGFIPWLEEF+ SFSWHLSFKGEHP+EAPFW+WF+SLK
Sbjct: 301 IISGVVLPVIAFLVPEIPIIKAIGFIPWLEEFMGSFSWHLSFKGEHPAEAPFWLWFISLK 360
Query: 361 PFPFHFDPDVYAVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILG 420
PFPFHF+PDVYAVTDPILMISMI F+FAVPYVSLRRKGL EIFWMFWSII FFALQYILG
Sbjct: 361 PFPFHFNPDVYAVTDPILMISMIAFIFAVPYVSLRRKGLGEIFWMFWSIIGFFALQYILG 420
Query: 421 GKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR 477
GKTQFIFYATPL+PPGAVALGVISYEIIKWEYFERS++IY+NYLRS LK+ IKR
Sbjct: 421 GKTQFIFYATPLVPPGAVALGVISYEIIKWEYFERSVKIYMNYLRS----LKEFIKR 473
>gb|AAK43320.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 372
Score = 121 bits (300), Expect = 2e-26
Identities = 89/291 (30%), Positives = 149/291 (50%), Gaps = 18/291 (6%)
Query: 157 YPDEENIHKYLNTEHPFLGKDIIALGM-LIEDKPFYWRIPGIIEHALIVIIVTLVAYKIT 215
YP+E+NI Y+N EHP L K I+A+ + + P WRIP I L++I+ + K+
Sbjct: 66 YPNEQNIQTYINPEHPPLAKYIMAVFIYFVGYYPIVWRIPSWILGDLMLIVGYFLGKKLV 125
Query: 216 KS----YLASSIAATFAALDPLLFATGIVAMLDIHVAFFIALFMLFLALDRIRLSGIALG 271
+ LA + A ALDP +++ +A+LDI+V+FF L + FL D+ + IAL
Sbjct: 126 SNGILGNLAGILTALLIALDPNVWSLHGIALLDIYVSFFSFLSLYFLLNDKPLWASIALA 185
Query: 272 LAAATKLSG-AFAFPILWFKILKEKDLKEYLISGLVLPMVSFLIPEITIIKAIGFI-PWL 329
LA +K S FP L++ ++K+ I G+ +P + +++ +I G I WL
Sbjct: 186 LAMLSKESAYVLIFPFLYYLGEISNNVKKRAIYGIGIPALIYILFSTPLIAYYGGIKAWL 245
Query: 330 EEFIASFS-W-----HLSFKGEHPSEAPFWMWFVSLKPFPFHFDPDVYAVTDPILMISMI 383
+ I + W H++ P W WF+++ PF+ ++YA T+P ++I I
Sbjct: 246 DATIIHRALWDVTNGHITLTATSQISTP-WDWFLNI--HPFYLGYNLYASTNPYVLILWI 302
Query: 384 VFVFAVPYVSLRRKGLSEIFWMFWSIIAFFALQYILGGKTQFIFYATPLIP 434
+ + ++ K ++ W W++ F + YILG T F FY T +P
Sbjct: 303 I-TTPLAFIFRDSKLITTTMWA-WTMWIGFVIVYILGNHTLFSFYVTDFMP 351
>pir||E72776 hypothetical protein APE0199 - Aeropyrum pernix (strain K1)
>gi|5103590|dbj|BAA79111.1| (AP000058) 418aa long
hypothetical protein [Aeropyrum pernix]
Length = 418
Score = 120 bits (298), Expect = 4e-26
Identities = 89/309 (28%), Positives = 147/309 (46%), Gaps = 33/309 (10%)
Query: 166 YLNTEHPFLGKDIIALGMLI-EDKPFYWRIPGIIEHALIVIIV---TLVAYKITKSYLAS 221
Y N EHP LGK IIAL ML+ D+P WR+P ++E LI +I+ +AY+ +A
Sbjct: 94 YYNAEHPPLGKYIIALSMLLCGDRPLCWRLPSVVEAGLIPVILWAGLALAYRGVLGPVAG 153
Query: 222 SIAATFAALDPLLFATGIVAMLDIHVAFFIALFMLFLALDRIRLSGIALGLAAATKLSG- 280
+ AA AA DP+L G VAMLDIH AFF AL + A R + A GLAA+ K+SG
Sbjct: 154 AAAALAAASDPVLRVMGSVAMLDIHQAFFTALAIALAANRRFIPAISAAGLAASVKMSGG 213
Query: 281 -----------AFAFPILWFKILKEKDLKEYLISGLVLPMVSFLIPEITIIKAIGFIPWL 329
++A +W ++ +GL++ ++ ++ G + +
Sbjct: 214 AIVLATATVAASWAQGSIWRRL-------AVFTAGLLIGGSVYIALYAPLVLHFGPMWVI 266
Query: 330 EEFIASFSWHLSFKGEHPSEAPFWMWFVSLKPFPFHFDPDVY-AVTDPILMISMIVFVFA 388
EE I + WH + + P + W ++ PF + V AVT+ ++ + + F
Sbjct: 267 EETINALKWHTTSRPPGPPASSVLGWIINSNPFYLSLEGRVMAAVTNTVVHATALGFAAI 326
Query: 389 VPYVSLRRK-------GLSEIFWMFWSIIAFFALQYILGGKTQFIFYATPLIPPGAVALG 441
L + G++ ++ +F I+ + Y+ G +T + FY+ L P A +G
Sbjct: 327 ALLAELLERRGRPSWPGVAHVYMLF--ILILYTAVYLAGNRTLYSFYSVQLTPIAAAVIG 384
Query: 442 VISYEIIKW 450
+ ++ W
Sbjct: 385 EATAAMLTW 393
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.144 0.445
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185901218
Number of Sequences: 2977
Number of extensions: 8434600
Number of successful extensions: 24530
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24516
Number of HSP's gapped (non-prelim): 7
length of query: 477
length of database: 189,106,746
effective HSP length: 51
effective length of query: 426
effective length of database: 158,583,909
effective search space: 67556745234
effective search space used: 67556745234
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 167 (69.5 bits)