BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2017 494819 494463 -119 !not a gene!
         (119 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71045 hypothetical protein PH1652 - Pyrococcus horikoshii ...    96  2e-19

>pir||D71045 hypothetical protein PH1652 - Pyrococcus horikoshii
          >gi|3258081|dbj|BAA30764.1| (AP000006) 102aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 102
          
 Score = 95.6 bits (234), Expect = 2e-19
 Identities = 46/72 (63%), Positives = 56/72 (76%)

Query: 3  IAVKREIQNIKDRLPKISPSIIPRTAPKRRAWKVACVRKAIPFRFIKGLSRPSKVPTIKL 62
          +A+KR+IQNIK+R P I+P IIP+TAP  +AW VA VRKA P   I+GLS P+ V TIKL
Sbjct: 5  MAIKRDIQNIKERSPMINPRIIPKTAPNNKAWNVAWVRKATPLTLIRGLSNPNSVLTIKL 64

Query: 63 ARNALRRYSSIM 74
          A  ALRRYSSI+
Sbjct: 65 ANRALRRYSSII 76


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.139    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45026688
Number of Sequences: 2977
Number of extensions: 1728127
Number of successful extensions: 3344
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3343
Number of HSP's gapped (non-prelim): 1
length of query: 119
length of database: 189,106,746
effective HSP length: 50
effective length of query: 69
effective length of database: 159,182,396
effective search space: 10983585324
effective search space used: 10983585324
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 160 (66.7 bits)