BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2019 (PAB2019) DE:Hypothetical protein
(238 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (st... 490 e-138
pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii ... 440 e-123
pir||D64479 hypothetical protein MJ1437 - Methanococcus jannasch... 206 2e-52
pir||F69125 conserved hypothetical protein MTH209 - Methanobacte... 177 1e-43
pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii ... 104 8e-22
pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (st... 101 1e-20
pir||D72286 conserved hypothetical protein - Thermotoga maritima... 94 2e-18
dbj|BAB05874.1| (AP001514) unknown conserved protein [Bacillus h... 85 7e-16
gb|AAF46077.2| (AE003435) CG15771 gene product [Drosophila melan... 83 2e-15
pir||D71157 probable haloacid dehalogenase (EC 3.8.1.-) PH0459 [... 81 1e-14
pir||B69983 conserved hypothetical protein ysaA - Bacillus subti... 80 2e-14
dbj|BAB04192.1| (AP001508) unknown conserved protein in others [... 76 3e-13
pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 ... 73 2e-12
dbj|BAB18787.1| (AB048605) hypothetical protein [Thermus thermop... 73 4e-12
gb|AAG19573.1| (AE005047) Vng1202c [Halobacterium sp. NRC-1] 72 7e-12
pir||G75522 hydrolase, CbbY/CbbZ/GpH/YieH family - Deinococcus r... 71 2e-11
pir||A75103 phosphoglycolate phosphatase PAB1576 - Pyrococcus ab... 71 2e-11
pir||D82438 conserved hypothetical protein VCA0608 [imported] - ... 69 4e-11
dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillu... 69 4e-11
sp|P33999|YJJG_ECOLI HYPOTHETICAL 25.3 KD PROTEIN IN RIMI-PRFC I... 69 5e-11
>pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (strain Orsay)
>gi|5457946|emb|CAB49436.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 238
Score = 490 bits (1247), Expect = e-138
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH
Sbjct: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
Query: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN
Sbjct: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
Query: 121 PVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSD 180
PVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSD
Sbjct: 121 PVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSD 180
Query: 181 IYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENENGSNKEVHPAR 238
IYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENENGSNKEVHPAR
Sbjct: 181 IYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENENGSNKEVHPAR 238
>pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii
>gi|3258084|dbj|BAA30767.1| (AP000006) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 440 bits (1119), Expect = e-123
Identities = 207/238 (86%), Positives = 227/238 (94%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
M+KVIFFDLDDTLVDT+KLAE+AR+NAIENMIRHGLPVDFETAYSEL+ELIKEYGSNFP+
Sbjct: 1 MVKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPY 60
Query: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
HFDYLLRRLDLPYNPKW+SAGVIAYHNTKFAYLREVPGARKVLIRL+ELGY LGIITDGN
Sbjct: 61 HFDYLLRRLDLPYNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDGN 120
Query: 121 PVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSD 180
PVKQWEKILRLE+DDFFEHVIISDFEGVKKPHPKIFKKALKAFNV +EALMVGDRLYSD
Sbjct: 121 PVKQWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRLYSD 180
Query: 181 IYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENENGSNKEVHPAR 238
IYGAK VGMKTVWF+YGK+S+ ELEYR+YADYEI+ L+ LL+V+ E+ SNK+VHP R
Sbjct: 181 IYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESLLEVLARESSSNKKVHPPR 238
>pir||D64479 hypothetical protein MJ1437 - Methanococcus jannaschii
>gi|1592085|gb|AAB99446.1| (U67584) L-2-haloalkanoic
acid dehalogenase isolog [Methanococcus jannaschii]
Length = 228
Score = 206 bits (518), Expect = 2e-52
Identities = 105/226 (46%), Positives = 152/226 (66%), Gaps = 2/226 (0%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
MIK I FDLDDTL ++++ E+ARR A+++MI GL +DFE A + L ++IK+ GSN+
Sbjct: 1 MIKGILFDLDDTLYNSSEFVEIARREAVKSMIDAGLNIDFEEAMNILNKIIKDKGSNYGK 60
Query: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
HFD L++ + Y+PK ++ G+I YHN K A LR P K L+ L+ +G +LG+ITDG
Sbjct: 61 HFDDLVKAVLGKYDPKIITTGIITYHNVKVALLRPYPHTIKTLMELKAMGLKLGVITDGL 120
Query: 121 PVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSD 180
+KQWEK++RL I FF+ VI S+ G+ KPH + FK LK + A+E + VGDR+ D
Sbjct: 121 TIKQWEKLIRLGIHPFFDDVITSEEFGLGKPHLEFFKYGLKRMGLKAEETVYVGDRVDKD 180
Query: 181 IYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIEN 226
I AK +GM TV GKY +++E EY+DY I LQ+L+ +++N
Sbjct: 181 IKPAKELGMITVRILKGKY--KDMEDDEYSDYTINSLQELVDIVKN 224
>pir||F69125 conserved hypothetical protein MTH209 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621255|gb|AAB84715.1| (AE000808) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 226
Score = 177 bits (444), Expect = 1e-43
Identities = 90/225 (40%), Positives = 138/225 (61%), Gaps = 1/225 (0%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
M+K +FFD+DDTL DT+ A+LAR+ A+ MI GLP+ E AY L E+I E GSN+
Sbjct: 1 MLKAVFFDIDDTLYDTSGFAKLARKAALNVMIDAGLPLTQEEAYKLLREIISEKGSNYDR 60
Query: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
HF+ L + + P ++ G+I YHN KFA LR P LI L+ GYRLG+I++G
Sbjct: 61 HFNVLTKTVFGEEKPLLIALGMITYHNVKFALLRPFPNTTSTLIDLKSKGYRLGVISNGI 120
Query: 121 PVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSD 180
+KQWEK++RL I FF+ V+ SD G +KP+ +IF++AL+ + ++MVG++ D
Sbjct: 121 TIKQWEKLIRLGIHHFFDEVVTSDEVGFEKPNIRIFEEALRRMGCKPERSVMVGNKFNED 180
Query: 181 IYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIE 225
I GA N GM + + ++ E ++ E ++ + D+ ++ E
Sbjct: 181 ILGATNAGMSAILVN-SELTEAERDHVEKNGLDVTVIDDISQLKE 224
>pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii
>gi|3258380|dbj|BAA31063.1| (AP000007) 217aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 217
Score = 104 bits (258), Expect = 8e-22
Identities = 76/228 (33%), Positives = 110/228 (47%), Gaps = 13/228 (5%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
M+K + FD+D TL+ L + + E L E+ K G H
Sbjct: 1 MVKAVLFDIDGTLLSEKPLIMFILPQVYDELANKLNISRMEARRIFLSEIEKRKGKYEWH 60
Query: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
+++ R LP+ + I + TK + PG +VL L+E GYRLGI+T G
Sbjct: 61 DWNFFFRLFSLPFKYE----DFIMKYPTK---IEVFPGVVEVLKYLKERGYRLGIVTSG- 112
Query: 121 PVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSD 180
P Q K+ I +F+ V+ D G KP P+IF AL+ + ++A+MVGD L D
Sbjct: 113 PRYQVLKLKVSGIYRYFDVVVTRDDVGSIKPEPRIFLAALEKLKISPKDAVMVGDSLEQD 172
Query: 181 IYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENEN 228
I GAK VGMK+VW G + L D+EI + L +VIE+E+
Sbjct: 173 ILGAKGVGMKSVWINVGGENGYNL-----PDFEISSILQLPEVIEDES 215
>pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (strain Orsay)
>gi|5459129|emb|CAB50615.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 216
Score = 101 bits (248), Expect = 1e-20
Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 20/230 (8%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
M++ I FDLD+TL+ L E + + E L E+ + G H
Sbjct: 1 MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
Query: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
++Y RR LP+ + + +++Y + +PG R L LRE YRL I+T G
Sbjct: 61 DWNYFFRRFSLPFKFEEL---ILSYPEK----ITVLPGVRDTLEILREK-YRLAIVTSGP 112
Query: 121 PVKQWEKILRLEID---DFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRL 177
+ IL+L++ D+F+ VI D KP+PKIF AL+ V+ +A+MVGD L
Sbjct: 113 RYQ----ILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSL 168
Query: 178 YSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENE 227
D+ GAK +G+KTVW K + Y D+EI + +LL+V+E+E
Sbjct: 169 EQDVLGAKALGIKTVWIN----QKGDNGY-NLPDFEISSISELLEVLEDE 213
>pir||D72286 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981726|gb|AAD36252.1|AE001774_9 (AE001774)
conserved hypothetical protein [Thermotoga maritima]
Length = 225
Score = 93.6 bits (229), Expect = 2e-18
Identities = 63/204 (30%), Positives = 111/204 (53%), Gaps = 16/204 (7%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPV--DFETAYSEL----MELIKEY 54
M K + FDLD T++D K + A + +++G+P+ D Y E+ +L+ E
Sbjct: 1 MKKGVLFDLDGTILDFEKSEDQALKRTF---LKYGIPLTEDQVFLYREINRKWWKLLAEG 57
Query: 55 GSN----FPHHFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELG 110
+ F+ L+ L++P +P+ V+ + + + + +L PGA + L RL++
Sbjct: 58 KVSKDVVVVARFEEFLKTLNIPLDPRKVAKDYLEFLSEEAHFL---PGAEEFLERLKKKD 114
Query: 111 YRLGIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEA 170
R+ ++T+G Q ++ +L++D FFE V+ S+ GV+KP P+IF AL+ + +E
Sbjct: 115 LRMAVVTNGVRFVQEKRSRKLKLDRFFEFVLTSEEAGVEKPDPRIFWLALERMKLKKEEV 174
Query: 171 LMVGDRLYSDIYGAKNVGMKTVWF 194
L VGD SD+ GA+N G+ V F
Sbjct: 175 LYVGDDFSSDLEGARNAGIDFVLF 198
>dbj|BAB05874.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 267
Score = 85.0 bits (207), Expect = 7e-16
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 111 YRLGIITDGNPVKQWEKI-LRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQE 169
Y+L ++T+G+P Q K+ + E+ +F+H++IS G KP P IF+ AL ++ E
Sbjct: 147 YQLLLLTNGSPHLQQTKLDITPELVPYFDHIVISGGFGRGKPDPSIFEHALSLLSLTKDE 206
Query: 170 ALMVGDRLYSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENENG 229
A+MVGD L +DI GA VG+K+VW + + E+E YEIE L+ LL +++ N
Sbjct: 207 AIMVGDNLMTDILGASRVGIKSVWINREQKEQGEVE----PTYEIEHLEQLLDILKKLNV 262
Query: 230 SN 231
N
Sbjct: 263 QN 264
>gb|AAF46077.2| (AE003435) CG15771 gene product [Drosophila melanogaster]
Length = 355
Score = 83.5 bits (203), Expect = 2e-15
Identities = 68/235 (28%), Positives = 112/235 (46%), Gaps = 19/235 (8%)
Query: 2 IKVIFFDLDDTLVDTTKLAELARRNAIENM-IRHGLPVDFET-AYSELMELIKEYGSNFP 59
I+ +FDLD+TL+ T A R + + ++ D T A ++ + N
Sbjct: 26 IRAFYFDLDNTLIPTRAGDSKAIRKLADFLETQYQFSKDDATQATQNFLKAFRRCPDNSQ 85
Query: 60 HHFDYL---LRRLDLPYNPKWVSAGVIA-YHNTKFAYLREVPGARKVLIRLRELGYRLGI 115
D L R LP K ++ + + ++ YL ++L+R+R+ GY L +
Sbjct: 86 TSLDSWRTHLWRESLPARHKHLAEQIYPKWLKLRYRYLAVPADYVQLLLRMRQAGYALAL 145
Query: 116 ITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGD 175
IT+G QWEK+ L + +F+ V++S +KPHP+IF A NV QE +M+GD
Sbjct: 146 ITNGPSNAQWEKVAELNVRGYFDCVLVSSDLPWEKPHPEIFYAACNFLNVKPQECVMIGD 205
Query: 176 RLYSDIYGA--KNVGMKTVWFKYGK-----YSKEELEYREYADYEIEKLQDLLKV 223
+L +DI G +G+ T W S E++EY+ + KL LL++
Sbjct: 206 KLETDIKGGHLAQLGL-TFWTPLSNSSAAAQSLEDVEYKPHV-----KLGSLLEM 254
>pir||D71157 probable haloacid dehalogenase (EC 3.8.1.-) PH0459 [similarity] -
Pyrococcus horikoshii >gi|3256862|dbj|BAA29545.1|
(AP000002) 232aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 232
Score = 80.8 bits (196), Expect = 1e-14
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 14/237 (5%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNF-- 58
MI+ +FFD TL+ E I + P++ +T E +L +E SN+
Sbjct: 1 MIRAVFFDFVGTLLSVE--GEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAG 58
Query: 59 -PHH-----FDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYR 112
P+ + ++R+L Y K+ + Y P +VL L+ Y
Sbjct: 59 KPYRPIRDIEEEVMRKLAEKYGFKYPENFWEIHLRMHQRYGELYPEVVEVLKSLKGK-YH 117
Query: 113 LGIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALM 172
+G+ITD + + L I D F+ + S+ G KPHP+IF+ ALK V +EA+
Sbjct: 118 VGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVY 177
Query: 173 VGDRLYSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENENG 229
VGD D G+KN+GM ++ E+ E+ + D+ + L++++K+++ NG
Sbjct: 178 VGDNPVKDCGGSKNLGMTSILL---DRKGEKREFWDKCDFIVSDLREVIKIVDELNG 231
>pir||B69983 conserved hypothetical protein ysaA - Bacillus subtilis
>gi|1770000|emb|CAA99609.1| (Z75208) hypothetical
protein [Bacillus subtilis] >gi|2635359|emb|CAB14854.1|
(Z99118) similar to hypothetical proteins [Bacillus
subtilis]
Length = 260
Score = 80.4 bits (195), Expect = 2e-14
Identities = 74/263 (28%), Positives = 114/263 (43%), Gaps = 43/263 (16%)
Query: 2 IKVIFFDLDDTLV-DTTKLAELARRNAIENMIRHGL-PVDFETAYSELMELIKEYGSNFP 59
+K +FFDLDDTL+ D + ++ ++GL P +FE A E + +P
Sbjct: 1 MKAVFFDLDDTLLWDEKSVRTTFAETCLQAEKKYGLAPEEFEAAVREAARELYMSYETYP 60
Query: 60 HH-------FDYLLRRLDLPYNPKWVSAGVIA--YHNTKFA---------------YLRE 95
+ F+ L P + + I Y + YL E
Sbjct: 61 YTVMIGINPFEGLWSNFSEPISEGFQKLNKIVPGYRRNAWTNGLKALGIDDPAYGEYLGE 120
Query: 96 VPGARK------------VLIRLRELGYRLGIITDGNPVKQWEKILRL-EIDDFFEHVII 142
A + VL +L+ Y L ++T+G+P Q EK+ + E+ +F ++I
Sbjct: 121 FFAAERRKRPFVYDETFAVLDQLKGK-YELLLLTNGDPSLQKEKLAGVPELAPYFNEIVI 179
Query: 143 SDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSDIYGAKNVGMKTVWFKYGKYSKE 202
S G KP IF+ LK N++ +A+MVGD L +DI GA G+KTVW K
Sbjct: 180 SGAFGKGKPDVSIFEHCLKLMNIEKDDAIMVGDNLNTDILGASRAGIKTVWINRTD-KKN 238
Query: 203 ELEYREYADYEIEKLQDLLKVIE 225
E + + DY I L DL ++E
Sbjct: 239 ETDVK--PDYIISSLHDLFPILE 259
>dbj|BAB04192.1| (AP001508) unknown conserved protein in others [Bacillus
halodurans]
Length = 224
Score = 76.5 bits (185), Expect = 3e-13
Identities = 65/217 (29%), Positives = 99/217 (44%), Gaps = 29/217 (13%)
Query: 4 VIFFDLDDTLVDTTKLAELARRNAIE--NMIRHGLP---VDFETAYSELME--------- 49
+IFFD+DDTL+D RR A + + RH LP DF A+ E E
Sbjct: 1 MIFFDIDDTLLDHQGAE---RRGAAQFYHQYRHELPYGKADFLQAWEEASEHFYTKYLTG 57
Query: 50 ---LIKEYGSNFPHHFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRL 106
L ++ F LL D+ + ++ + Y+ + R + L R
Sbjct: 58 CLSLQEQRRERIRSFFPELL---DVEADERFQD--YLDYYEVNW---RRFDDVKACLDRW 109
Query: 107 RELGYRLGIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVD 166
+ G LG+I++G+ +Q K+ RLEI +FF +V+ S+ GV KP P IF A
Sbjct: 110 TKAGLSLGVISNGSQQQQQSKLERLEIREFFRYVVTSEAAGVAKPDPHIFAYACNLAKEA 169
Query: 167 AQEALMVGDRLYSDIYGAKNVGMKTVWF-KYGKYSKE 202
+ VGDRL +D ++ G+ VW + GK +E
Sbjct: 170 VESCFYVGDRLKTDAVASQQAGLTGVWLNRLGKELRE 206
>pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458997|emb|CAB50483.1| (AJ248288) 2-HALOALKANOIC
ACID DEHALOGENASE (EC 3.8.1.2 RELATED PROTEIN
[Pyrococcus abyssi]
Length = 229
Score = 73.4 bits (177), Expect = 2e-12
Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 14/235 (5%)
Query: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNF-- 58
MI+ +FFD TL+ + E I + G +D E +L +E S +
Sbjct: 1 MIRAVFFDFVGTLLSSE--GEAVTHLKIMEEVLKGYNLDPRKILEEYEKLTREAFSAYAG 58
Query: 59 -PHH-----FDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYR 112
P+ + ++R++ Y K+ + Y + P +VL LR+ Y
Sbjct: 59 KPYRPIRDIEEEIMRKISEEYGFKYPENFWEIHLKMHQEYGKLYPEVVEVLKELRQ-SYH 117
Query: 113 LGIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALM 172
+G+ITD + + L + D F+ + S+ G KPHP+IF+ AL+ V ++A+
Sbjct: 118 VGMITDSDTEYLNAHLEALGVRDLFDSITTSEEAGFFKPHPRIFEIALRKAGVKGEDAVY 177
Query: 173 VGDRLYSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENE 227
VGD D GAKN+GM ++ + E+ + + D+ + L++++K+++ +
Sbjct: 178 VGDNPVKDCGGAKNLGMISILL---DRTGEKKDLWDRCDFVVSDLREVIKIVKGQ 229
>dbj|BAB18787.1| (AB048605) hypothetical protein [Thermus thermophilus]
Length = 218
Score = 72.6 bits (175), Expect = 4e-12
Identities = 39/101 (38%), Positives = 55/101 (53%)
Query: 97 PGARKVLIRLRELGYRLGIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIF 156
P A L R G L ++T+G P Q EK++ + F V+IS G+ KP P++F
Sbjct: 92 PEAEAFLAEARRRGLALALLTNGVPDLQREKLVGAGLAHHFSLVLISGEVGIGKPDPRLF 151
Query: 157 KKALKAFNVDAQEALMVGDRLYSDIYGAKNVGMKTVWFKYG 197
+ AL AF V +EA MVGD D+ GA+ G++ VW G
Sbjct: 152 RMALCAFGVAPEEAAMVGDNPQKDVRGARLAGVRAVWVDRG 192
>gb|AAG19573.1| (AE005047) Vng1202c [Halobacterium sp. NRC-1]
Length = 232
Score = 71.8 bits (173), Expect = 7e-12
Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 12/231 (5%)
Query: 3 KVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVD---FETAYSELMELIKEYGSNFP 59
+ +F DLD+TL E ++ A E G V FE+ YS +K S
Sbjct: 4 EAVFVDLDNTLYPYQPCNEAGQQAAWETATDRGYDVSRAAFESLYSRARAAVKREVSETA 63
Query: 60 HHFD---YLLRRLDLPYN-PKWVSAGVIA--YHNTKFAYLREVPGARKVLIRLRELGYRL 113
D Y R ++L P A +A Y + L G R+ L RLR+ G +
Sbjct: 64 SAHDRGLYFKRAIELQAGTPNAADALALADAYWDAYIDALSLFDGVRETLDRLRDAGLDV 123
Query: 114 GIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMV 173
++T+ Q K+ + D + V+ S G +KP +F L V +A+MV
Sbjct: 124 AVVTNLTTRVQLRKLAATGLADRVDCVLTSQEVGREKPASVMFTVPLARLGVAPADAVMV 183
Query: 174 GDRLYSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVI 224
GD + SD+ GA VG+ +V + L RE D+ IE +D+ V+
Sbjct: 184 GDSVASDVVGANGVGLTSV---LCNNDRTGLTGRESPDHRIESFRDVTDVV 231
>pir||G75522 hydrolase, CbbY/CbbZ/GpH/YieH family - Deinococcus radiodurans
(strain R1) >gi|6458094|gb|AAF09992.1|AE001901_7
(AE001901) hydrolase, CbbY/CbbZ/GpH/YieH family
[Deinococcus radiodurans]
Length = 155
Score = 70.6 bits (170), Expect = 2e-11
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 79 SAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGNPVKQWEKILRLEIDDFFE 138
+A ++ +++T + + +P A +VL LR G +G++T+G Q + ++ D +
Sbjct: 15 AADLLTHYDTALDHAQAMPHAAEVLTELRRRGVNIGVVTNGWEDAQTRCLAGCDLSDLAD 74
Query: 139 HVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYSDIYGAKNVGMKTVWFKYG 197
V+IS+ G+ KP P I+ ALK V + VGD +D++G + VGM+ + G
Sbjct: 75 DVVISEAVGLSKPDPCIYHLALKRLGVTTAHSWFVGDSPRNDVWGPQQVGMRAAYLPTG 133
>pir||A75103 phosphoglycolate phosphatase PAB1576 - Pyrococcus abyssi (strain
Orsay) >gi|5458638|emb|CAB50126.1| (AJ248286)
PHOSPHOGLYCOLATE PHOSPHATASE [Pyrococcus abyssi]
Length = 231
Score = 70.6 bits (170), Expect = 2e-11
Identities = 60/228 (26%), Positives = 112/228 (48%), Gaps = 8/228 (3%)
Query: 4 VIFFDLDDTLVDTTKLAELARRNAIENMIR---HGLPVDFETAYSELMELIKE-YGSNFP 59
++ DLDDTL +T + +A + +IR L F T E +E +++ + +F
Sbjct: 3 LVILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLDFK 62
Query: 60 HHFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDG 119
F+ ++ + + + V + + F+ L+ A L L+ L ++ ++TD
Sbjct: 63 GIFNRIMEDIYEDVDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLVTDS 122
Query: 120 NPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYS 179
Q +K+ L I+++F+ VI+S G K P FK A + F + + +VGDR +
Sbjct: 123 ASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPRE-EIVFVVGDRDET 181
Query: 180 DIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENE 227
D+ G K++G T+ + G + + YAD+ + L + L+VI+NE
Sbjct: 182 DMKGGKSIGAITILVRRGYFKGRRV---RYADHVVNDLYEALEVIKNE 226
>pir||D82438 conserved hypothetical protein VCA0608 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658020|gb|AAF96509.1|
(AE004391) conserved hypothetical protein [Vibrio
cholerae]
Length = 224
Score = 69.5 bits (167), Expect = 4e-11
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Query: 96 VPGARKVLIRLRELGYRLGIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKI 155
+PGA +++ L+ RLGIIT+G Q ++ + + DFF+ ++IS+ G+ KP I
Sbjct: 97 LPGAMELMQALQGKA-RLGIITNGFTELQDVRLAKTGMTDFFDQIVISEEVGIAKPDAGI 155
Query: 156 FKKALKAF-NVDAQEALMVGDRLYSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEI 214
F AL+ N LMVGD +SDI G N G++T W ++ K + Y +
Sbjct: 156 FAHALERMGNPTKSRVLMVGDNPHSDILGGLNFGIETCWLNVHQHPKPDGITPHYEVTSL 215
Query: 215 EKLQDLL 221
+L+++L
Sbjct: 216 HELREIL 222
>dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillus halodurans]
Length = 215
Score = 69.5 bits (167), Expect = 4e-11
Identities = 61/228 (26%), Positives = 102/228 (43%), Gaps = 25/228 (10%)
Query: 2 IKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPHH 61
I + FDLD TL++T +L I + H + Y + I+ G
Sbjct: 3 INTVLFDLDGTLINTNEL--------IISSFLHTFETYYPGKYGR-KDAIECIGPPLTDS 53
Query: 62 FDYLLRRLDLPYNPKWVSAGVIAYHNTKFAY----LREVPGARKVLIRLRELGYRLGIIT 117
F +RLD P+ V V Y A+ + G + + L E G++L I+T
Sbjct: 54 F----KRLD----PERVEEMVATYRKHNHAHHDKLVEPYEGVYETVKTLHEQGFKLAIVT 105
Query: 118 DGNPVKQWEKILRLEIDDFFEHVI-ISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDR 176
+ + +D+FF+ ++ + D E VK P+P+ +KA+ A +E +MVGD
Sbjct: 106 TKIRETAMKGLKLFGLDEFFDVIVALDDVENVK-PNPEPLEKAMNALGAKKEETIMVGDN 164
Query: 177 LYSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVI 224
+ DI G KN G+KT Y ++ + + DY + + DLL ++
Sbjct: 165 SH-DILGGKNAGVKTAVVGYAIRGEDYVRQFD-PDYVLRSMPDLLDIV 210
>sp|P33999|YJJG_ECOLI HYPOTHETICAL 25.3 KD PROTEIN IN RIMI-PRFC INTERGENIC REGION
>gi|1361267|pir||S56598 hypothetical 22.2K protein
(rimI-prfC intergenic region) - Escherichia coli
>gi|537214|gb|AAA97270.1| (U14003) yjjG gene product
[Escherichia coli] >gi|1790833|gb|AAC77327.1| (AE000507)
putative phosphatase [Escherichia coli K12]
Length = 225
Score = 69.1 bits (166), Expect = 5e-11
Identities = 64/203 (31%), Positives = 94/203 (45%), Gaps = 28/203 (13%)
Query: 5 IFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGS-NFPHHFD 63
IFFD D+TL L R + +D+ ++ E ++Y + N P D
Sbjct: 6 IFFDADETLFTFDSFTGLQR-----------MFLDYSVTFTA--EDFQDYQAVNKPLWVD 52
Query: 64 Y---LLRRLDLPYN--PKW-----VSAGVI--AYHNTKFAYLREVPGARKVLIRLRELGY 111
Y + L L + W V G + A+ N +PGA +L +R
Sbjct: 53 YQNGAITSLQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRG-NA 111
Query: 112 RLGIITDGNPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKAL-KAFNVDAQEA 170
++GIIT+G Q ++ R + D+F+ ++IS+ GV KP+ KIF AL +A N D
Sbjct: 112 KIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRV 171
Query: 171 LMVGDRLYSDIYGAKNVGMKTVW 193
LMVGD SDI G N G+ T W
Sbjct: 172 LMVGDTAESDILGGINAGLATCW 194
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93458574
Number of Sequences: 2977
Number of extensions: 4025543
Number of successful extensions: 10305
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10279
Number of HSP's gapped (non-prelim): 23
length of query: 238
length of database: 189,106,746
effective HSP length: 53
effective length of query: 185
effective length of database: 157,386,935
effective search space: 29116582975
effective search space used: 29116582975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)