BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2020 (PAB2020) DE:Hypothetical protein
         (191 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75169 hypothetical protein PAB2020 - Pyrococcus abyssi (st...   379  e-105
pir||H71045 hypothetical protein PH1656 - Pyrococcus horikoshii ...   321  5e-87
pir||D75006 hypothetical protein PAB1311 - Pyrococcus abyssi (st...    99  2e-20
pir||A71156 hypothetical protein PH0448 - Pyrococcus horikoshii ...    96  4e-19
pir||A72766 hypothetical protein APE0116 - Aeropyrum pernix (str...    85  5e-16
gi|11499118 A. fulgidus predicted coding region AF1523 [Archaeog...    78  7e-14
gi|11499400 A. fulgidus predicted coding region AF1812 [Archaeog...    78  9e-14

>pir||D75169 hypothetical protein PAB2020 - Pyrococcus abyssi (strain Orsay)
           >gi|5457945|emb|CAB49435.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 191
           
 Score =  379 bits (964), Expect = e-105
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG 60
           MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG
Sbjct: 1   MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG 60

Query: 61  IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK 120
           IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK
Sbjct: 61  IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK 120

Query: 121 WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK 180
           WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK
Sbjct: 121 WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK 180

Query: 181 AYHFLYERGII 191
           AYHFLYERGII
Sbjct: 181 AYHFLYERGII 191


>pir||H71045 hypothetical protein PH1656 - Pyrococcus horikoshii
           >gi|3258085|dbj|BAA30768.1| (AP000006) 191aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 191
           
 Score =  321 bits (813), Expect = 5e-87
 Identities = 159/191 (83%), Positives = 175/191 (91%)

Query: 1   MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG 60
           MK VQIRKFILLDNKYKSK+I G+KVTTIRFGKYEAKPG+EVYIVITPSDTAIAKAKIKG
Sbjct: 1   MKVVQIRKFILLDNKYKSKVISGKKVTTIRFGKYEAKPGTEVYIVITPSDTAIAKAKIKG 60

Query: 61  IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK 120
           I+TKKVKELT EDA+LDGFSDVKELVRELSRIYGEL+GEDEVTIIEFEDV+PLKEGIPLK
Sbjct: 61  IRTKKVKELTIEDAKLDGFSDVKELVRELSRIYGELHGEDEVTIIEFEDVEPLKEGIPLK 120

Query: 121 WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK 180
            LKGLNYRDPY IA L +ENF    LSED K+ILS+V+++GLR+  KR+GPKR+QQALLK
Sbjct: 121 LLKGLNYRDPYRIAELALENFKELNLSEDTKLILSKVVQNGLREAAKRFGPKRLQQALLK 180

Query: 181 AYHFLYERGII 191
           AYH LYE GII
Sbjct: 181 AYHSLYEEGII 191


>pir||D75006 hypothetical protein PAB1311 - Pyrococcus abyssi (strain Orsay)
           >gi|5459004|emb|CAB50490.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 190
           
 Score = 99.5 bits (244), Expect = 2e-20
 Identities = 70/189 (37%), Positives = 104/189 (54%), Gaps = 9/189 (4%)

Query: 8   KFILLDNKYKSKIIKGEKVTTIRFG-KYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKV 66
           K +  D +YK  II G+K  TIR G K   KPG EV  +I      + KA+IK + TKKV
Sbjct: 2   KNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEV--LIHSGGYVLGKARIKSVVTKKV 59

Query: 67  KELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLKWLKGLN 126
            ELT+EDAR DGF + +EL+  L + Y  +  +   TI+EFE +K L + I L       
Sbjct: 60  AELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPI-LSADYPYE 118

Query: 127 YRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYG----PKRVQQALLKAY 182
             +P EIA L +++ D+ +  ED+ ++   + E  LR    + G      ++++ L KAY
Sbjct: 119 GNNPIEIAELALKHLDNLSF-EDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAY 177

Query: 183 HFLYERGII 191
             L +RGI+
Sbjct: 178 EELKKRGIM 186


>pir||A71156 hypothetical protein PH0448 - Pyrococcus horikoshii
           >gi|3256851|dbj|BAA29534.1| (AP000002) 211aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 211
           
 Score = 95.6 bits (234), Expect = 4e-19
 Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 9/189 (4%)

Query: 8   KFILLDNKYKSKIIKGEKVTTIRFG-KYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKV 66
           K +  D +YK  II G+K  TIR G K   KPG EV  +I      + KA+I  + TKKV
Sbjct: 23  KNLKFDGRYKDDIISGKKKATIRLGRKVNLKPGEEV--LIHAGGYVLGKARITRVTTKKV 80

Query: 67  KELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLKWLKGLN 126
            ELT+EDAR DGF   +EL+  L   Y  +  +   TI+EFE +  L + I L       
Sbjct: 81  SELTDEDARKDGFKSREELLEALREHYKFVKPDSPATIVEFEMLSVLDKPI-LSADYPYE 139

Query: 127 YRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYG----PKRVQQALLKAY 182
             +P EIA L +E+ D+ +  E+V ++   + E  LR    + G      ++++ L KAY
Sbjct: 140 GNNPIEIAELALEHLDNLSF-EEVALLKLFLKEGSLRKAAMKLGGLNKRYKIREVLRKAY 198

Query: 183 HFLYERGII 191
             L +RGI+
Sbjct: 199 EELKKRGIM 207


>pir||A72766 hypothetical protein APE0116 - Aeropyrum pernix (strain K1)
           >gi|5103506|dbj|BAA79027.1| (AP000058) 202aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 202
           
 Score = 85.0 bits (207), Expect = 5e-16
 Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 14/191 (7%)

Query: 8   KFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKVK 67
           + I++   Y  K+++G K TTIR G  + +      ++I      +AKA+I  +  KKV 
Sbjct: 15  RHIMIKGVYADKLLEGRKTTTIRLGIVKPRYRE---VIIHGHGRPLAKAEIVDVHVKKVS 71

Query: 68  ELTNEDARLDGFSDVKELVRELSRIYG-ELYGEDEVTIIEFEDVKPLKEGIPLK-WLKGL 125
           ELT EDAR DGF  V+EL+  L R+YG +L  ED VTII    VK   + + L     GL
Sbjct: 72  ELTLEDARRDGFRSVRELIESLERVYGYKLDPEDAVTIIHLR-VKQRFDNLDLSDPYLGL 130

Query: 126 NYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDT-VKRYGP----KRVQQALLK 180
              +P +IARL +     S   E+ +V+      + +R T V+ YG      RV++ L +
Sbjct: 131 ---EPADIARLGLRYLGDSLSDEEKRVLEDLTRTNSIRATAVRLYGSIERRGRVRRVLRR 187

Query: 181 AYHFLYERGII 191
               L  RG+I
Sbjct: 188 VLQELLRRGLI 198


>gi|11499118 A. fulgidus predicted coding region AF1523 [Archaeoglobus fulgidus]
           >gi|7483652|pir||B69440 hypothetical protein AF1523 -
           Archaeoglobus fulgidus >gi|2649049|gb|AAB89733.1|
           (AE000997) A. fulgidus predicted coding region AF1523
           [Archaeoglobus fulgidus]
           Length = 103
           
 Score = 78.0 bits (189), Expect = 7e-14
 Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 10  ILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKVKEL 69
           I  D+++  +II GEK+TT+R G  ++ P   + + +T +    A AK+K +  K+V+EL
Sbjct: 4   INFDSEFVERIINGEKITTVRRG-IKSYPVGRI-VELTANGERFALAKVKKVVVKRVREL 61

Query: 70  TNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVK 111
           T+EDA  DGF   +EL+  L RIYG++  ++ VT++ FE VK
Sbjct: 62  TDEDAIRDGFKSREELISALKRIYGDIRDDEFVTVVHFEVVK 103


>gi|11499400 A. fulgidus predicted coding region AF1812 [Archaeoglobus fulgidus]
           >gi|7483710|pir||C69476 hypothetical protein AF1812 -
           Archaeoglobus fulgidus >gi|2648748|gb|AAB89451.1|
           (AE000978) A. fulgidus predicted coding region AF1812
           [Archaeoglobus fulgidus]
           Length = 177
           
 Score = 77.6 bits (188), Expect = 9e-14
 Identities = 66/190 (34%), Positives = 100/190 (51%), Gaps = 20/190 (10%)

Query: 8   KFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKVK 67
           K +    KY   +I+G K  TIR      K G EV  ++      I KAKIK IK + V 
Sbjct: 2   KHLEFKGKYAKALIEGRKRLTIRKWT-NLKEGDEV--LVHSGGKIIGKAKIKAIKKRHVS 58

Query: 68  ELTNEDARLDGFSDVKELVRELSRIYGELYGED-EVTIIEFEDVKPLKEGIPLKWLKGLN 126
           E+T+E+ARLDGF + +EL+ E+ ++     G D EV +I F D +PL+   P K   G  
Sbjct: 59  EITDEEARLDGFRNAEELMEEMKKM-----GYDGEVYVIHF-DFEPLQAVNPHKLYYG-- 110

Query: 127 YRDPYEIARLCIENFDSSALSEDVKVILSRVIEDG-LRDTVKRYGPKR----VQQALLKA 181
             D  EIAR  +E+ +   L E  +++L   +  G +R   ++ G  R    +++ L K 
Sbjct: 111 DADLEEIARRSLEHLE---LDERDRLVLETFLSYGSIRKAARKLGGARKRGEIRKVLRKC 167

Query: 182 YHFLYERGII 191
           Y+ L +RG+I
Sbjct: 168 YNELVKRGLI 177


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67889403
Number of Sequences: 2977
Number of extensions: 2694088
Number of successful extensions: 7770
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7762
Number of HSP's gapped (non-prelim): 7
length of query: 191
length of database: 189,106,746
effective HSP length: 56
effective length of query: 135
effective length of database: 155,591,474
effective search space: 21004848990
effective search space used: 21004848990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)