BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2020 (PAB2020) DE:Hypothetical protein
(191 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75169 hypothetical protein PAB2020 - Pyrococcus abyssi (st... 379 e-105
pir||H71045 hypothetical protein PH1656 - Pyrococcus horikoshii ... 321 5e-87
pir||D75006 hypothetical protein PAB1311 - Pyrococcus abyssi (st... 99 2e-20
pir||A71156 hypothetical protein PH0448 - Pyrococcus horikoshii ... 96 4e-19
pir||A72766 hypothetical protein APE0116 - Aeropyrum pernix (str... 85 5e-16
gi|11499118 A. fulgidus predicted coding region AF1523 [Archaeog... 78 7e-14
gi|11499400 A. fulgidus predicted coding region AF1812 [Archaeog... 78 9e-14
>pir||D75169 hypothetical protein PAB2020 - Pyrococcus abyssi (strain Orsay)
>gi|5457945|emb|CAB49435.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 191
Score = 379 bits (964), Expect = e-105
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG 60
MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG
Sbjct: 1 MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG 60
Query: 61 IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK 120
IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK
Sbjct: 61 IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK 120
Query: 121 WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK 180
WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK
Sbjct: 121 WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK 180
Query: 181 AYHFLYERGII 191
AYHFLYERGII
Sbjct: 181 AYHFLYERGII 191
>pir||H71045 hypothetical protein PH1656 - Pyrococcus horikoshii
>gi|3258085|dbj|BAA30768.1| (AP000006) 191aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 191
Score = 321 bits (813), Expect = 5e-87
Identities = 159/191 (83%), Positives = 175/191 (91%)
Query: 1 MKTVQIRKFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKG 60
MK VQIRKFILLDNKYKSK+I G+KVTTIRFGKYEAKPG+EVYIVITPSDTAIAKAKIKG
Sbjct: 1 MKVVQIRKFILLDNKYKSKVISGKKVTTIRFGKYEAKPGTEVYIVITPSDTAIAKAKIKG 60
Query: 61 IKTKKVKELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLK 120
I+TKKVKELT EDA+LDGFSDVKELVRELSRIYGEL+GEDEVTIIEFEDV+PLKEGIPLK
Sbjct: 61 IRTKKVKELTIEDAKLDGFSDVKELVRELSRIYGELHGEDEVTIIEFEDVEPLKEGIPLK 120
Query: 121 WLKGLNYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYGPKRVQQALLK 180
LKGLNYRDPY IA L +ENF LSED K+ILS+V+++GLR+ KR+GPKR+QQALLK
Sbjct: 121 LLKGLNYRDPYRIAELALENFKELNLSEDTKLILSKVVQNGLREAAKRFGPKRLQQALLK 180
Query: 181 AYHFLYERGII 191
AYH LYE GII
Sbjct: 181 AYHSLYEEGII 191
>pir||D75006 hypothetical protein PAB1311 - Pyrococcus abyssi (strain Orsay)
>gi|5459004|emb|CAB50490.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 190
Score = 99.5 bits (244), Expect = 2e-20
Identities = 70/189 (37%), Positives = 104/189 (54%), Gaps = 9/189 (4%)
Query: 8 KFILLDNKYKSKIIKGEKVTTIRFG-KYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKV 66
K + D +YK II G+K TIR G K KPG EV +I + KA+IK + TKKV
Sbjct: 2 KNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEV--LIHSGGYVLGKARIKSVVTKKV 59
Query: 67 KELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLKWLKGLN 126
ELT+EDAR DGF + +EL+ L + Y + + TI+EFE +K L + I L
Sbjct: 60 AELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPI-LSADYPYE 118
Query: 127 YRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYG----PKRVQQALLKAY 182
+P EIA L +++ D+ + ED+ ++ + E LR + G ++++ L KAY
Sbjct: 119 GNNPIEIAELALKHLDNLSF-EDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAY 177
Query: 183 HFLYERGII 191
L +RGI+
Sbjct: 178 EELKKRGIM 186
>pir||A71156 hypothetical protein PH0448 - Pyrococcus horikoshii
>gi|3256851|dbj|BAA29534.1| (AP000002) 211aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 211
Score = 95.6 bits (234), Expect = 4e-19
Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
Query: 8 KFILLDNKYKSKIIKGEKVTTIRFG-KYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKV 66
K + D +YK II G+K TIR G K KPG EV +I + KA+I + TKKV
Sbjct: 23 KNLKFDGRYKDDIISGKKKATIRLGRKVNLKPGEEV--LIHAGGYVLGKARITRVTTKKV 80
Query: 67 KELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLKWLKGLN 126
ELT+EDAR DGF +EL+ L Y + + TI+EFE + L + I L
Sbjct: 81 SELTDEDARKDGFKSREELLEALREHYKFVKPDSPATIVEFEMLSVLDKPI-LSADYPYE 139
Query: 127 YRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYG----PKRVQQALLKAY 182
+P EIA L +E+ D+ + E+V ++ + E LR + G ++++ L KAY
Sbjct: 140 GNNPIEIAELALEHLDNLSF-EEVALLKLFLKEGSLRKAAMKLGGLNKRYKIREVLRKAY 198
Query: 183 HFLYERGII 191
L +RGI+
Sbjct: 199 EELKKRGIM 207
>pir||A72766 hypothetical protein APE0116 - Aeropyrum pernix (strain K1)
>gi|5103506|dbj|BAA79027.1| (AP000058) 202aa long
hypothetical protein [Aeropyrum pernix]
Length = 202
Score = 85.0 bits (207), Expect = 5e-16
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 14/191 (7%)
Query: 8 KFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKVK 67
+ I++ Y K+++G K TTIR G + + ++I +AKA+I + KKV
Sbjct: 15 RHIMIKGVYADKLLEGRKTTTIRLGIVKPRYRE---VIIHGHGRPLAKAEIVDVHVKKVS 71
Query: 68 ELTNEDARLDGFSDVKELVRELSRIYG-ELYGEDEVTIIEFEDVKPLKEGIPLK-WLKGL 125
ELT EDAR DGF V+EL+ L R+YG +L ED VTII VK + + L GL
Sbjct: 72 ELTLEDARRDGFRSVRELIESLERVYGYKLDPEDAVTIIHLR-VKQRFDNLDLSDPYLGL 130
Query: 126 NYRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDT-VKRYGP----KRVQQALLK 180
+P +IARL + S E+ +V+ + +R T V+ YG RV++ L +
Sbjct: 131 ---EPADIARLGLRYLGDSLSDEEKRVLEDLTRTNSIRATAVRLYGSIERRGRVRRVLRR 187
Query: 181 AYHFLYERGII 191
L RG+I
Sbjct: 188 VLQELLRRGLI 198
>gi|11499118 A. fulgidus predicted coding region AF1523 [Archaeoglobus fulgidus]
>gi|7483652|pir||B69440 hypothetical protein AF1523 -
Archaeoglobus fulgidus >gi|2649049|gb|AAB89733.1|
(AE000997) A. fulgidus predicted coding region AF1523
[Archaeoglobus fulgidus]
Length = 103
Score = 78.0 bits (189), Expect = 7e-14
Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Query: 10 ILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKVKEL 69
I D+++ +II GEK+TT+R G ++ P + + +T + A AK+K + K+V+EL
Sbjct: 4 INFDSEFVERIINGEKITTVRRG-IKSYPVGRI-VELTANGERFALAKVKKVVVKRVREL 61
Query: 70 TNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVK 111
T+EDA DGF +EL+ L RIYG++ ++ VT++ FE VK
Sbjct: 62 TDEDAIRDGFKSREELISALKRIYGDIRDDEFVTVVHFEVVK 103
>gi|11499400 A. fulgidus predicted coding region AF1812 [Archaeoglobus fulgidus]
>gi|7483710|pir||C69476 hypothetical protein AF1812 -
Archaeoglobus fulgidus >gi|2648748|gb|AAB89451.1|
(AE000978) A. fulgidus predicted coding region AF1812
[Archaeoglobus fulgidus]
Length = 177
Score = 77.6 bits (188), Expect = 9e-14
Identities = 66/190 (34%), Positives = 100/190 (51%), Gaps = 20/190 (10%)
Query: 8 KFILLDNKYKSKIIKGEKVTTIRFGKYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKVK 67
K + KY +I+G K TIR K G EV ++ I KAKIK IK + V
Sbjct: 2 KHLEFKGKYAKALIEGRKRLTIRKWT-NLKEGDEV--LVHSGGKIIGKAKIKAIKKRHVS 58
Query: 68 ELTNEDARLDGFSDVKELVRELSRIYGELYGED-EVTIIEFEDVKPLKEGIPLKWLKGLN 126
E+T+E+ARLDGF + +EL+ E+ ++ G D EV +I F D +PL+ P K G
Sbjct: 59 EITDEEARLDGFRNAEELMEEMKKM-----GYDGEVYVIHF-DFEPLQAVNPHKLYYG-- 110
Query: 127 YRDPYEIARLCIENFDSSALSEDVKVILSRVIEDG-LRDTVKRYGPKR----VQQALLKA 181
D EIAR +E+ + L E +++L + G +R ++ G R +++ L K
Sbjct: 111 DADLEEIARRSLEHLE---LDERDRLVLETFLSYGSIRKAARKLGGARKRGEIRKVLRKC 167
Query: 182 YHFLYERGII 191
Y+ L +RG+I
Sbjct: 168 YNELVKRGLI 177
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.386
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67889403
Number of Sequences: 2977
Number of extensions: 2694088
Number of successful extensions: 7770
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7762
Number of HSP's gapped (non-prelim): 7
length of query: 191
length of database: 189,106,746
effective HSP length: 56
effective length of query: 135
effective length of database: 155,591,474
effective search space: 21004848990
effective search space used: 21004848990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)