BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2022 (qacE-like) DE:SMALL MULTIDRUG EXPORT RELATED PROTEIN
(QACE)
         (153 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75169 small multidrug export related protein (qace) PAB202...   298  2e-80
pir||B71046 hypothetical protein PH1658 - Pyrococcus horikoshii ...   217  7e-56
pir||B72703 hypothetical protein APE1041 - Aeropyrum pernix (str...   100  1e-20
gi|11499286 small multidrug export protein (qacE) [Archaeoglobus...    73  2e-12

>pir||B75169 small multidrug export related protein (qace) PAB2022 - Pyrococcus
           abyssi (strain Orsay) >gi|5457943|emb|CAB49433.1|
           (AJ248284) SMALL MULTIDRUG EXPORT RELATED PROTEIN (QACE)
           [Pyrococcus abyssi]
           Length = 153
           
 Score =  298 bits (755), Expect = 2e-80
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MSFLEVLFLSLIPTFEGRYAVIYGIARGYPLQETLGASILGVLILSLLLPKVLPIVDIIA 60
           MSFLEVLFLSLIPTFEGRYAVIYGIARGYPLQETLGASILGVLILSLLLPKVLPIVDIIA
Sbjct: 1   MSFLEVLFLSLIPTFEGRYAVIYGIARGYPLQETLGASILGVLILSLLLPKVLPIVDIIA 60

Query: 61  IKLENTRLRRIAELYINYVNRAREKARPYVERWGFIGLTIFVAIPLPGTGVWTGAIAAYF 120
           IKLENTRLRRIAELYINYVNRAREKARPYVERWGFIGLTIFVAIPLPGTGVWTGAIAAYF
Sbjct: 61  IKLENTRLRRIAELYINYVNRAREKARPYVERWGFIGLTIFVAIPLPGTGVWTGAIAAYF 120

Query: 121 LGIRERTAMASLILGGLISIALTTIPTLGIIKI 153
           LGIRERTAMASLILGGLISIALTTIPTLGIIKI
Sbjct: 121 LGIRERTAMASLILGGLISIALTTIPTLGIIKI 153


>pir||B71046 hypothetical protein PH1658 - Pyrococcus horikoshii
           >gi|3258087|dbj|BAA30770.1| (AP000006) 159aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 159
           
 Score =  217 bits (546), Expect = 7e-56
 Identities = 95/153 (62%), Positives = 129/153 (84%)

Query: 1   MSFLEVLFLSLIPTFEGRYAVIYGIARGYPLQETLGASILGVLILSLLLPKVLPIVDIIA 60
           M F+E+L LSL+PTFEGRYA+IYG+A+GYP+ ETL AS+LGVLILS+ LPK+LP++D+I 
Sbjct: 7   MKFVEILLLSLVPTFEGRYAIIYGLAKGYPMLETLSASVLGVLILSITLPKLLPVIDVIM 66

Query: 61  IKLENTRLRRIAELYINYVNRAREKARPYVERWGFIGLTIFVAIPLPGTGVWTGAIAAYF 120
            KL+ T L+  A+LY +Y+ R R+KA+PYVERWGF+GL IFVAIPLPGTG+WTGA+A+Y 
Sbjct: 67  DKLKGTGLKPFADLYTSYLERTRKKAKPYVERWGFLGLMIFVAIPLPGTGIWTGALASYL 126

Query: 121 LGIRERTAMASLILGGLISIALTTIPTLGIIKI 153
           LGI ER ++ +L++GGL+S+ +T  P +G +KI
Sbjct: 127 LGISERASIPALLIGGLLSVMITAFPAIGYLKI 159


>pir||B72703 hypothetical protein APE1041 - Aeropyrum pernix (strain K1)
           >gi|5104711|dbj|BAA80026.1| (AP000060) 143aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 143
           
 Score = 99.8 bits (245), Expect = 1e-20
 Identities = 56/137 (40%), Positives = 85/137 (61%), Gaps = 2/137 (1%)

Query: 16  EGRYAVIYGIARGYPLQETLGASILGVLILSLLLPKVLPIVDIIAIKLENTRLRRIAE-- 73
           E RYA++ G+  G  L E+L  S  GVL+L LLL   +  VD +   L + +   +    
Sbjct: 2   EPRYALLVGLGLGLGLLESLALSAAGVLVLGLLLYTAIDTVDRLMEALCSRKRLGVNPGC 61

Query: 74  LYINYVNRAREKARPYVERWGFIGLTIFVAIPLPGTGVWTGAIAAYFLGIRERTAMASLI 133
           +Y+   + A  +A  YVER+G+ GL +F+AIPLP TG+++GA+AA  LGIR    +ASL+
Sbjct: 62  IYLALRSSAARRAGGYVERYGWAGLIVFIAIPLPATGMYSGALAAALLGIRGPRLLASLL 121

Query: 134 LGGLISIALTTIPTLGI 150
           LGG +S+A+T +   G+
Sbjct: 122 LGGYLSLAITAVVGGGV 138


>gi|11499286 small multidrug export protein (qacE) [Archaeoglobus fulgidus]
           >gi|7483962|pir||G69461 small multidrug export protein
           (qacE) homolog - Archaeoglobus fulgidus
           >gi|2648857|gb|AAB89552.1| (AE000986) small multidrug
           export protein (qacE) [Archaeoglobus fulgidus]
           Length = 137
           
 Score = 72.6 bits (175), Expect = 2e-12
 Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 6/142 (4%)

Query: 12  IPTFEGRYAVIYGIARGYPLQETLGASILGVLILSLLLPKVLPIVDIIAIKLENTRLRRI 71
           +P  E R A+   +  G+   E    S+LG +   L +P +L  +D + +++  T++  +
Sbjct: 1   MPFSELRGAIPLALYFGFSPAEAYLLSVLGNI---LPVPFLLLFLDYL-VRIA-TKVELL 55

Query: 72  AELYINYVNRAREKARPYVERWGFIGLTIFVAIPLPGTGVWTGAIAAYFLGIRERTAMAS 131
           A +Y   V R  E+ +  VER+G++GLTIFVAIPLP TG WTG + A+ L +    A   
Sbjct: 56  ARIYRRVVERV-ERRKGVVERYGYLGLTIFVAIPLPVTGAWTGTLLAFLLQLNRLKAFLF 114

Query: 132 LILGGLISIALTTIPTLGIIKI 153
           +  G  I+  +  + ++GII++
Sbjct: 115 ISAGVCIAGVVVLLASIGIIRL 136


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.148    0.430 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52196974
Number of Sequences: 2977
Number of extensions: 2049569
Number of successful extensions: 6199
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6195
Number of HSP's gapped (non-prelim): 4
length of query: 153
length of database: 189,106,746
effective HSP length: 50
effective length of query: 103
effective length of database: 159,182,396
effective search space: 16395786788
effective search space used: 16395786788
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)