BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2026 (PAB2026) DE:GTP-BINDING PROTEIN
(387 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75167 GTP-binding protein PAB2026 - Pyrococcus abyssi (str... 761 0.0
pir||H71047 probable developmentally regulated GTP-binding prote... 729 0.0
pir||F72509 probable developmentally regulated GTP-binding prote... 309 3e-83
gi|11499729 GTP-binding protein [Archaeoglobus fulgidus] >gi|742... 286 4e-76
pir||E64465 GTP-binding protein DRG homolog - Methanococcus jann... 264 1e-69
pir||F69083 GTP-binding protein DRG homolog - Methanobacterium t... 249 5e-65
gb|AAK42533.1| GTP binding conserved hypothetical protein [Sulfo... 244 1e-63
gb|AAF21162.1|AC010926_14 (AC010926) putative GTP-binding protei... 233 3e-60
gb|AAF55688.1| (AE003727) CG6195 gene product [Drosophila melano... 232 6e-60
gb|AAF97313.1|AC007843_16 (AC007843) GTP binding protein [Arabid... 230 2e-59
sp|P43690|DRG1_XENLA DEVELOPMENTALLY REGULATED GTP-BINDING PROTE... 229 5e-59
pir||T39192 probable GTP-binding protein - fission yeast (Schiz... 228 7e-59
pir||T42381 probable GTP-binding protein - fission yeast (Schiz... 228 1e-58
gi|4758796 developmentally regulated GTP-binding protein 1; neur... 228 1e-58
gi|11417999 developmentally regulated GTP-binding protein 1 [Hom... 228 1e-58
gi|6681225 developmentally regulated GTP-binding protein 1 [Mus ... 228 1e-58
gb|AAB53256.1| (U66408) GTP-binding protein [Arabidopsis thalian... 227 2e-58
pir||JC1349 GTP-binding protein DRG [validated] - mouse 226 3e-58
emb|CAC12607.1| (AL445067) GTP-binding protein [Thermoplasma aci... 225 6e-58
gb|AAF79465.1|AC022492_9 (AC022492) F1L3.17 [Arabidopsis thaliana] 224 1e-57
pir||T09368 GTP-binding protein F23K16.150 - Arabidopsis thalian... 224 2e-57
gb|AAF58591.1| (AE003823) 128up gene product [Drosophila melanog... 224 2e-57
pir||T43254 GTP-binding protein - Thermoplasma acidophilum >gi|1... 223 2e-57
gi|10946678 developmentally regulated GTP-binding protein 2 [Mus... 221 9e-57
gi|4557537 developmentally regulated GTP-binding protein 2 [Homo... 221 1e-56
sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422452|pir||S... 220 2e-56
gi|6319281 similar to Xenopus GTP-binding protein DRG; Fun11p [S... 220 2e-56
gb|AAC33135.1| (AF035177) GTP-binding protein [Oncorhynchus tsha... 220 2e-56
pir||T31553 hypothetical protein T28D6.6 - Caenorhabditis elegan... 220 2e-56
sp|P17103|YRB1_HALCU HYPOTHETICAL 40 KD GTP-BINDING PROTEIN IN R... 216 4e-55
gi|6321612 Ygr173wp [Saccharomyces cerevisiae] >gi|1723727|sp|P5... 214 1e-54
sp|P34280|YKK3_CAEEL HYPOTHETICAL 64.3 KD GTP-BINDING PROTEIN C0... 213 2e-54
gb|AAF77220.1|AC009601_14 (AC009601) L165.8 [Leishmania major] 204 2e-51
sp|P32235|GTP1_SCHPO GTP-BINDING PROTEIN 1 >gi|419815|pir||JT074... 202 5e-51
gi|11427872 developmentally regulated GTP-binding protein 2 [Hom... 198 1e-49
pir||T06251 GTP binding protein - garden pea >gi|2345148|gb|AAB6... 194 1e-48
emb|CAA19048.2| (AL023587) gtp-binding protein 1. [Schizosacchar... 190 2e-47
pir||T40599 hypothetical protein SPBC649.06 - fission yeast (Sc... 190 2e-47
gb|AAG01361.1|AC068666_8 (AC068666) L165.8 [Leishmania major] 110 2e-23
emb|CAA74319.1| (Y13986) GTP-binding protein [Ostertagia circumc... 104 2e-21
pir||G72586 hypothetical protein APE1164 - Aeropyrum pernix (str... 99 8e-20
pir||T42690 hypothetical protein DKFZp434N1827.1 - human (fragme... 99 1e-19
pir||C64466 GTP-binding protein - Methanococcus jannaschii >gi|1... 96 5e-19
pir||C75402 conserved hypothetical protein - Deinococcus radiodu... 89 1e-16
pir||H71165 probable GTP-binding protein - Pyrococcus horikoshii... 88 2e-16
pir||H75066 GTP-binding protein PAB1357 - Pyrococcus abyssi (str... 87 3e-16
pir||E70354 probable GTP-binding protein - Aquifex aeolicus >gi|... 87 3e-16
gb|AAF97355.1| (AY005820) Obg-like protein [Thermococcus zilligii] 85 2e-15
dbj|BAB07770.1| (AP001520) GTP-binding protein [Bacillus halodur... 84 2e-15
sp|P47270|Y024_MYCGE PROBABLE GTP-BINDING PROTEIN MG024 >gi|1361... 83 5e-15
pir||B72418 conserved hypothetical protein - Thermotoga maritima... 83 6e-15
pir||G82870 GTP-binding protein UU595 [imported] - Ureaplasma ur... 82 8e-15
pir||D70197 GTP-binding protein obg - Lyme disease spirochete >g... 80 6e-14
pir||T40281 gtp-binding protein 1 - fission yeast (Schizosacchar... 80 6e-14
pir||A64591 probable GTP-binding protein gtp1 - Helicobacter pyl... 79 7e-14
pir||A72280 conserved hypothetical protein - Thermotoga maritima... 79 7e-14
pir||B75563 GTP-binding protein Obg - Deinococcus radiodurans (s... 79 1e-13
sp|P75088|Y024_MYCPN PROBABLE GTP-BINDING PROTEIN MG024 HOMOLOG ... 78 1e-13
pir||PC7024 hypothetical 218 protein - Acholeplasma laidlawii (f... 78 1e-13
pir||E71920 hypothetical protein jhp0516 - Helicobacter pylori (... 76 5e-13
emb|CAC12034.1| (AL445065) GTP-binding protein Obg related prote... 76 5e-13
pir||E70477 GTP-binding protein obg - Aquifex aeolicus >gi|29842... 76 8e-13
pir||B82532 GTP-binding protein XF2641 [imported] - Xylella fast... 76 8e-13
pir||H81425 probable GTP-binding protein Cj0096 [imported] - Cam... 75 1e-12
sp|P37518|YYAF_BACSU HYPOTHETICAL 40.1 KD GTP-BINDING PROTEIN IN... 75 1e-12
sp|P44681|YCHF_HAEIN PROBABLE GTP-BINDING PROTEIN HI0393 >gi|107... 75 2e-12
pir||C70129 probable GTP-binding protein BB0235 - Lyme disease s... 74 3e-12
pir||S48582 hypothetical protein - Mycoplasma capricolum (SGC3) ... 73 4e-12
pir||T42036 obg protein - Streptomyces coelicolor >gi|1783290|db... 73 7e-12
pir||S74797 GTP-binding protein obg - Synechocystis sp. (strain ... 72 9e-12
pir||T23645 hypothetical protein M01E5.2 - Caenorhabditis elegan... 72 9e-12
pir||A81367 probable GTP-binding protein Cj0930 [imported] - Cam... 72 9e-12
gb|AAF75096.1|AC007583_32 (AC007583) It is a member of GTP1/OBG ... 72 9e-12
gb|AAF79543.1|AC022464_1 (AC022464) F22G5.1 [Arabidopsis thaliana] 72 9e-12
dbj|BAA13501.1| (D87916) Obg [Streptomyces griseus] 72 1e-11
pir||D81037 GTP-binding protein, probable NMB1838 [imported] - N... 72 1e-11
pir||F71665 hypothetical protein RP604 - Rickettsia prowazekii >... 71 2e-11
dbj|BAA91783.1| (AK001603) unnamed protein product [Homo sapiens] 71 2e-11
dbj|BAB13092.1| (AP001119) hypothetical 43.3 kD GTP-binding prot... 71 2e-11
sp|P42641|YHBZ_ECOLI HYPOTHETICAL 43.3 KD GTP-BINDING PROTEIN IN... 71 3e-11
pir||H83074 GTP-binding protein Obg PA4566 [imported] - Pseudomo... 71 3e-11
pir||T30310 probable GTP binding protein - Lactococcus lactis (f... 70 4e-11
pir||S75088 probable GTP-binding protein sll0245 - Synechocystis... 70 5e-11
sp|P75215|Y384_MYCPN PROBABLE GTP-BINDING PROTEIN MG384 HOMOLOG ... 70 5e-11
pir||F70680 probable obg - Mycobacterium tuberculosis (strain H3... 69 8e-11
>pir||F75167 GTP-binding protein PAB2026 - Pyrococcus abyssi (strain Orsay)
>gi|5457931|emb|CAB49421.1| (AJ248284) GTP-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 387
Score = 761 bits (1944), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL 60
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL
Sbjct: 1 MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL 60
Query: 61 EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIP 120
EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIP
Sbjct: 61 EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIP 120
Query: 121 AMMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILL 180
AMMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILL
Sbjct: 121 AMMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILL 180
Query: 181 REFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVRE 240
REFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVRE
Sbjct: 181 REFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVRE 240
Query: 241 PVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINL 300
PVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINL
Sbjct: 241 PVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINL 300
Query: 301 DAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWG 360
DAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWG
Sbjct: 301 DAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWG 360
Query: 361 KSVKFPGQRVGPDHVLEDGDIVEIHAR 387
KSVKFPGQRVGPDHVLEDGDIVEIHAR
Sbjct: 361 KSVKFPGQRVGPDHVLEDGDIVEIHAR 387
>pir||H71047 probable developmentally regulated GTP-binding protein - Pyrococcus
horikoshii >gi|3258101|dbj|BAA30784.1| (AP000006) 387aa
long hypothetical developmentally regulated GTP-binding
protein [Pyrococcus horikoshii]
Length = 387
Score = 729 bits (1861), Expect = 0.0
Identities = 360/387 (93%), Positives = 383/387 (98%)
Query: 1 MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL 60
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKR+LAELR+EL
Sbjct: 1 MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRRLAELRREL 60
Query: 61 EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIP 120
EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEP+P
Sbjct: 61 EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPVP 120
Query: 121 AMMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILL 180
AMMNYKDVQIQLVEVPGL+EGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQM+ILL
Sbjct: 121 AMMNYKDVQIQLVEVPGLLEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMEILL 180
Query: 181 REFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVRE 240
REFERAGIKVNKRRPR+EIR+TPSGGIVING ENIKGD++EVM+MLREEKIHSAEITV+E
Sbjct: 181 REFERAGIKVNKRRPRVEIRKTPSGGIVINGAENIKGDLSEVMRMLREEKIHSAEITVKE 240
Query: 241 PVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINL 300
PVTLE+FADALD+SLVWKKAIIIANKGD+PGSK+NY KL+ YGE+FKI+PVSAKKRINL
Sbjct: 241 PVTLEEFADALDDSLVWKKAIIIANKGDSPGSKENYHKLINKYGEKFKIVPVSAKKRINL 300
Query: 301 DAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWG 360
+AVKEA+YDVAEIIRVFTKSPGEEPAYPPIALKRG+TV+DVAERIHKDLVKNFRYARVWG
Sbjct: 301 EAVKEAIYDVAEIIRVFTKSPGEEPAYPPIALKRGATVMDVAERIHKDLVKNFRYARVWG 360
Query: 361 KSVKFPGQRVGPDHVLEDGDIVEIHAR 387
KSVKFPGQRVGPDHVLEDGDIVEIHA+
Sbjct: 361 KSVKFPGQRVGPDHVLEDGDIVEIHAK 387
>pir||F72509 probable developmentally regulated GTP-binding protein APE2052 -
Aeropyrum pernix (strain K1) >gi|5105750|dbj|BAA81062.1|
(AP000063) 368aa long hypothetical developmentally
regulated GTP-binding protein [Aeropyrum pernix]
Length = 368
Score = 309 bits (784), Expect = 3e-83
Identities = 171/369 (46%), Positives = 242/369 (65%), Gaps = 8/369 (2%)
Query: 24 EKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGAAQ 83
EKI+ALE+ + VPKHKGTE L L +R+LAELR+ELE++R++R GGG S V+K GA Q
Sbjct: 3 EKIQALEEFISAVPKHKGTENLLLWARRRLAELREELEEKRKRRVGGGPSFFVEKSGAGQ 62
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
VL+G PN GKS +L ALT E ADYPFTT P M+ Y+D+Q Q+V+ P L+ G+
Sbjct: 63 AVLIGPPNSGKSSILAALTNAKPEVADYPFTTRMPRAGMLPYEDIQFQIVDTPPLLPGS- 121
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDP--IKQMKILLREFERAGIKVNKRRPRIEIRR 201
G + ++L + RNADAI +V L +DP ++ + ++RE E GI + +RR I +
Sbjct: 122 -GSSVNNRVLGLARNADAIILVFSL-DDPNLVETIDAVVREVEDRGIVITRRRGLARIMK 179
Query: 202 TPS-GGIVINGIENI-KGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKK 259
+ G+ I G + ++V ++L + +I++A + + V+L+D A+ +LV K
Sbjct: 180 SREVTGVRIEGPGRLTDATEDDVRRLLSQYRIYNAIVYIEGDVSLDDVESAVYINLVRKP 239
Query: 260 AIIIANKGDAPGSKDNYEKLVKAYGE-RFKIIPVSAKKRINLDAVKEALYDVAEIIRVFT 318
A+ I NK D PG+++ E VK GE I SA + L + L+ + +I+RV+T
Sbjct: 240 ALAILNKADLPGAREAAEPAVKRLGEIGIDTIVASALRGDGLGEIAPRLFRMLDIVRVYT 299
Query: 319 KSPGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLED 378
K P +EP P+ L RGSTV+DVA+ IHKDLV+ F+YARVWGKSVK+PGQRVGP+HV+ED
Sbjct: 300 KQPNKEPDKDPLVLHRGSTVMDVAKHIHKDLVRRFKYARVWGKSVKYPGQRVGPEHVVED 359
Query: 379 GDIVEIHAR 387
GDIVEIH R
Sbjct: 360 GDIVEIHVR 368
>gi|11499729 GTP-binding protein [Archaeoglobus fulgidus]
>gi|7428740|pir||B69518 GTP-binding protein DRG homolog
- Archaeoglobus fulgidus >gi|2648391|gb|AAB89108.1|
(AE000956) GTP-binding protein [Archaeoglobus fulgidus]
Length = 355
Score = 286 bits (723), Expect = 4e-76
Identities = 157/367 (42%), Positives = 231/367 (62%), Gaps = 17/367 (4%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEG 80
+I ++IR LE+ P +K TE ++K KLA LR+E EKQ+ + +SL KKEG
Sbjct: 5 SIEQQIRELEEEIKRTPYNKATEHHIGRLKAKLARLREEAEKQKAKAARQAFSL--KKEG 62
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIE 140
A VL+G P+VGKS LL LTG E ADY FTT +P+P ++NYK IQ+++VPG+IE
Sbjct: 63 DATAVLIGYPSVGKSTLLNKLTGAKSEVADYDFTTLKPVPGILNYKGASIQIIDVPGIIE 122
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIR 200
GAA G+G G ++++ +R AD I IV D+ + + I+ RE GI+++++ P + IR
Sbjct: 123 GAASGRGRGKEVISAVRVADLIIIVADVFN--LHTIDIVKRELYEGGIRLDQKPPDVVIR 180
Query: 201 RTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
+ GG+ I+ + D + +L+E KIHSA++ +RE +T+E DAL + V+ +
Sbjct: 181 KKERGGVRISSTVPLSIDEATITSVLKEYKIHSADVVIREDITIERLIDALAGNRVYIPS 240
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + NK D + I VSA+K INLD +KE +Y E IRV+ K
Sbjct: 241 LTVVNKIDLMDV------------DVADAIKVSAEKGINLDLLKEQIYRKLEFIRVYLKP 288
Query: 321 PGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDG 379
PG + + P+ L+RG+TV D+ ++H+D V+NFRYA+VWGKSVKF GQRVG +HV+EDG
Sbjct: 289 PGGKVDFSEPMILRRGATVEDICRKLHRDFVENFRYAKVWGKSVKFDGQRVGLEHVVEDG 348
Query: 380 DIVEIHA 386
DI+ I+A
Sbjct: 349 DIITIYA 355
>pir||E64465 GTP-binding protein DRG homolog - Methanococcus jannaschii
>gi|1591967|gb|AAB99336.1| (U67573) GTP-binding protein,
member of GTP1/OBG-family [Methanococcus jannaschii]
Length = 391
Score = 264 bits (668), Expect = 1e-69
Identities = 146/367 (39%), Positives = 225/367 (60%), Gaps = 10/367 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I E+IR +E+ P +K T+K ++K KLA+LR++ Q + GGG AVKK G
Sbjct: 27 IEEEIRRIEEELKKTPYNKATQKHIGRLKAKLAKLREQA--QSRGGGGGGKGYAVKKSGD 84
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
A VG P+VGKS LL LT E Y FTT +P ++ YK +IQL++ PG+I G
Sbjct: 85 ATAAFVGFPSVGKSTLLNKLTNAKSEVGAYAFTTLTIVPGILEYKGAKIQLLDAPGIIVG 144
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
A+ GKG G ++L+ +R+AD I + +D+ + + +L +E GI++++ P ++I+
Sbjct: 145 ASSGKGRGTEVLSAVRSADLILLTVDIY--TLDHLPVLEKELYNVGIRLDQTPPDVKIKV 202
Query: 202 TPSGGIVINGIENIKG-DINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
GGI ++ + D + + +L E +IH+A++ +RE +TLE F D + + V+ +
Sbjct: 203 KERGGINVSSTVPLTHIDEDTIEAILNEYRIHNADVVIREDITLEQFIDVVAGNRVYIPS 262
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERF--KIIPVSAKKRINLDAVKEALYDVAEIIRVFT 318
+++ NK D + + Y K +K E F I VS K INLD +KE +Y+ I+++
Sbjct: 263 LVVVNKIDL--ADEEYLKYIKQKLEEFGKDYILVSGNKGINLDLLKEKIYEKLGFIKIYL 320
Query: 319 KSPGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLE 377
K G++P + P+ ++RG+TV DV E++HKD V+NFRYA+VWGKS K PGQRVG DH LE
Sbjct: 321 KPQGKKPDFDEPLIMRRGATVKDVCEKLHKDFVRNFRYAQVWGKSAKHPGQRVGLDHKLE 380
Query: 378 DGDIVEI 384
DGDI+ I
Sbjct: 381 DGDILTI 387
>pir||F69083 GTP-binding protein DRG homolog - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622747|gb|AAB86094.1| (AE000921) GTP-binding
protein, GTP1/OBG family [Methanobacterium
thermoautotrophicum]
Length = 380
Score = 249 bits (628), Expect = 5e-65
Identities = 134/366 (36%), Positives = 222/366 (60%), Gaps = 11/366 (3%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I EKIR +E+ P +K T ++K K++ L++E QR+ G G +KK G
Sbjct: 19 IEEKIRKIEEEIQKTPYNKATAHHIGKLKAKISRLKEEA-LQRKTSSGKGRGFHIKKSGD 77
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
+ +VL+G P+VGKS LL LT + + DY FTT E +P +M Y+ QIQ+ ++PG+I G
Sbjct: 78 STVVLIGFPSVGKSTLLNELTSAESKVGDYQFTTLEIVPGVMEYRGAQIQIFDIPGIITG 137
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
A+ G+G G ++L+V R+AD I IV+D+ M I+LRE GI+ N+ P + ++R
Sbjct: 138 ASRGRGRGREILSVARSADLIVIVLDVFN--TDHMDIILRELRDVGIRPNETPPDVIVKR 195
Query: 202 TPSGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
GG+ ++ +E D + +L E IH+A++ +R+ +T++ F D ++ + + A
Sbjct: 196 RKLGGVKLSATVELTHLDEKIIRSVLNEYGIHNADVLIRDDITVDQFIDVMEANRAYIPA 255
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERF-KIIPVSAKKRINLDAVKEALYDVAEIIRVFTK 319
I + NK D E ++ E+F + + +SA + IN+D ++E +++ +IR++ K
Sbjct: 256 ITVINKIDLVD-----ESYLEGLREKFPEALFISADRDINIDELREEIFNRLGLIRIYLK 310
Query: 320 SPGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLED 378
G++ Y P+ ++ GSTV DV +++H+D V+ FR+ARVWG SVKF GQ+VG +HVL D
Sbjct: 311 PQGKKADYDEPLIIREGSTVGDVCQKLHRDFVRKFRHARVWGSSVKFDGQKVGLEHVLND 370
Query: 379 GDIVEI 384
D++ I
Sbjct: 371 EDVLRI 376
>gb|AAK42533.1| GTP binding conserved hypothetical protein [Sulfolobus
solfataricus]
Length = 351
Score = 244 bits (617), Expect = 1e-63
Identities = 163/390 (41%), Positives = 230/390 (58%), Gaps = 42/390 (10%)
Query: 1 MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL 60
M TN+ AE A + +AKT EK +AL++ VPKHKGTE L KR++AELR+E+
Sbjct: 1 MVTNLPAEAKAKWLKVMDAKTPEEKFQALQEFLKEVPKHKGTENLVYWAKRRMAELREEM 60
Query: 61 EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIP 120
E R+ +K GG+SL V+KEGA Q +L+G + +S ++R LT V E + P +P
Sbjct: 61 EV-RKSKKSGGFSLFVEKEGAGQAILIG-DMLLRSFIMRKLTNVKQEFNELP------VP 112
Query: 121 AMMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILL 180
M+ Y+DVQIQLV P + L K +G +IRNAD + I I+ ED + +K LL
Sbjct: 113 GMVKYEDVQIQLVNPP---KSLPLSKTIG-----LIRNADEVIIAINNKED-LSLIKSLL 163
Query: 181 REFERAGIKVNKRRPRIEIRRTPSG--GIVINGIENIKG-DINEVMKMLREEKIHSAEIT 237
E I + K + R+ I RT G GI + + + G D V + I SA +
Sbjct: 164 ---EDNNILLRKPKGRVVIERTRYGISGIRVVNLGKLIGIDEKVVRDYIESFGIKSAIVK 220
Query: 238 VREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKR 297
+ VTL+D ++ E++ +K ++I SKD ++ GE +P+ +
Sbjct: 221 IIGEVTLDDIEKSMFEAVSYKPTVVI--------SKDRFDT-----GE----LPMLTIDQ 263
Query: 298 INLDAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYAR 357
I D + + L+D+ E+IRV+TK PGEEP P+ LK+GSTVLDVA ++H L +NFRYAR
Sbjct: 264 I--DKLPKHLFDMLEVIRVYTKEPGEEPTKDPLILKKGSTVLDVARKLHSSLAENFRYAR 321
Query: 358 VWGKSVKFPGQRVGPDHVLEDGDIVEIHAR 387
VWGKSVKF GQ+VGP H+LED DIVEIH +
Sbjct: 322 VWGKSVKFQGQKVGPSHILEDRDIVEIHVK 351
>gb|AAF21162.1|AC010926_14 (AC010926) putative GTP-binding protein; 56356-53974 [Arabidopsis
thaliana]
Length = 399
Score = 233 bits (587), Expect = 3e-60
Identities = 134/368 (36%), Positives = 213/368 (57%), Gaps = 11/368 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I E+I+ +E A K+K TE Q+K K+A+LR +L + + GGG V K G
Sbjct: 3 IVERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKYGH 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
++ L+G P+VGKS LL LTG E+A Y FTT IP +++Y D +IQL+++PG+IEG
Sbjct: 63 GRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
A+ GKG G Q++AV +++D + +V+D S+ +IL +E E G+++NKR P+I ++
Sbjct: 123 ASEGKGRGRQVIAVAKSSDLVLMVLDASKSE-GHRQILTKELEAVGLRLNKRPPQIYFKK 181
Query: 202 TPSGGIVINGIENI-KGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
+GGI N + + D ++L E KIH+AE+ RE T++DF D ++ + + K
Sbjct: 182 KKTGGISFNTTTPLTRIDEKLCYQILHEYKIHNAEVLFREDATVDDFIDVVEGNRKYIKC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + NK D G D V + I +S ++NLD + ++D ++RV++K
Sbjct: 242 VYVYNKIDVVGIDD-----VDRLARQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKP 296
Query: 321 PGEEPAY-PPIAL---KRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVL 376
++P + P L + G TV D ++H+ LVK+ +YA VWG S + Q G H L
Sbjct: 297 QSQQPDFDEPFVLSADRGGCTVEDFCNQVHRTLVKDMKYALVWGTSARHYPQHCGLFHHL 356
Query: 377 EDGDIVEI 384
ED D+V+I
Sbjct: 357 EDEDVVQI 364
>gb|AAF55688.1| (AE003727) CG6195 gene product [Drosophila melanogaster]
Length = 363
Score = 232 bits (585), Expect = 6e-60
Identities = 135/366 (36%), Positives = 213/366 (57%), Gaps = 11/366 (3%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL-EKQRQQRKGGGYSLAVKKEG 80
I EKI +E+ A K+K TE +K KLA+ R +L E ++ KG G+ V K G
Sbjct: 3 ILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGEKGDGFD--VLKSG 60
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIE 140
A++ L+G P+VGKS +L LT + E+A+Y FTT IP ++ Y+ IQL+++PG+IE
Sbjct: 61 DARVALIGFPSVGKSTMLSTLTKTESEAANYEFTTLTCIPGVIEYQGANIQLLDLPGIIE 120
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIR 200
GAA GKG G Q++AV R AD + +++D ++ P ++L RE E GI++NKR+P I +
Sbjct: 121 GAAQGKGRGRQVIAVARTADLVLMMLDATK-PNVHRELLERELESVGIRLNKRKPNIYFK 179
Query: 201 RTPSGGIVINGIENI-KGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKK 259
+ GG+ N ++ + + V +L KI +AE+ RE T ++F D + + V+
Sbjct: 180 QKKGGGLSFNATCSLTRCNEKMVQTILHSFKIFNAEVLFREDCTEDEFIDVVTANRVYLP 239
Query: 260 AIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTK 319
+ + NK D ++ V + I VS ++NLD + EAL++ ++IRV+TK
Sbjct: 240 CLYVYNKIDQISIEE-----VDRLARQPNSIVVSCNMKLNLDYMMEALWEALQLIRVYTK 294
Query: 320 SPGEEPAYPP-IALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLED 378
PG P + + L++G +V V IH+ L F+YA VWG S K+ QRVG HV+ D
Sbjct: 295 KPGAPPDFDDGLILRKGVSVEHVCHAIHRTLAAQFKYALVWGTSTKYSPQRVGIAHVMAD 354
Query: 379 GDIVEI 384
D++++
Sbjct: 355 EDVIQV 360
>gb|AAF97313.1|AC007843_16 (AC007843) GTP binding protein [Arabidopsis thaliana]
Length = 399
Score = 230 bits (581), Expect = 2e-59
Identities = 133/368 (36%), Positives = 210/368 (56%), Gaps = 11/368 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I E+I+ +E A K+K TE Q+K K+A+LR +L + + GGG V K G
Sbjct: 3 IIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASGGGEGFEVTKYGH 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
++ L+G P+VGKS LL LTG E+A Y FTT IP +++Y D +IQL+++PG+IEG
Sbjct: 63 GRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
A+ GKG G Q++AV +++D + +V+D S+ +IL +E E G+++NK P+I ++
Sbjct: 123 ASEGKGRGRQVIAVAKSSDLVLMVLDASKSE-GHRQILTKELEAVGLRLNKTPPQIYFKK 181
Query: 202 TPSGGIVINGIENIKG-DINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
+GGI N + D ++L E KIH+AE+ RE T++DF D ++ + + K
Sbjct: 182 KKTGGISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDDFIDVIEGNRKYIKC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + NK D G D V + I +S ++NLD + ++D ++RV++K
Sbjct: 242 VYVYNKIDVVGIDD-----VDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKP 296
Query: 321 PGEEPAY-PPIAL---KRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVL 376
G++P + P L + G TV D +H+ LVK+ +YA VWG S + Q G L
Sbjct: 297 QGQQPDFDEPFVLSSDRGGCTVEDFCNHVHRTLVKDMKYALVWGTSTRHNPQNCGLSQHL 356
Query: 377 EDGDIVEI 384
ED D+V+I
Sbjct: 357 EDEDVVQI 364
>sp|P43690|DRG1_XENLA DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 1 (DRG 1) (XDRG)
>gi|2120159|pir||I51426 GTP-binding protein DRG -
African clawed frog >gi|433422|dbj|BAA02978.1| (D13865)
GTP-binding protein DRG [Xenopus laevis]
Length = 367
Score = 229 bits (577), Expect = 5e-59
Identities = 142/364 (39%), Positives = 210/364 (57%), Gaps = 10/364 (2%)
Query: 25 KIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGG-GYSLAVKKEGAAQ 83
+I +E A K+K T +K +LA+LR+EL + GG G V K G A+
Sbjct: 7 RIAEIEAEMARTQKNKATAYHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVAKTGDAR 66
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
I VG P+VGKS LL L GV E A Y FTT +P ++ YK +IQL+++PG+IEGA
Sbjct: 67 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVVRYKGAKIQLLDLPGIIEGAK 126
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTP 203
GKG G Q++AV R + I IV+D+ + P+ KI+ E E GI++NK+ P I ++
Sbjct: 127 DGKGRGRQVIAVARTCNLILIVLDVLK-PLGHKKIIENELEGFGIRLNKQPPNIGFKKKD 185
Query: 204 SGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAII 262
GGI + + D + V +L E KIH+A+IT+R T +D D ++ + V+ I
Sbjct: 186 KGGINLTATCAQSELDNDTVKSILAEYKIHNADITLRSDATADDLIDVVEGNRVYIPCIY 245
Query: 263 IANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPG 322
+ NK D + + E+L Y + +P+SA R N D + E ++D +++R++TK G
Sbjct: 246 VLNKID----QISIEELDIIY-KVPHCVPISAHHRWNFDDLLEKIWDYLQLVRIYTKPKG 300
Query: 323 EEPAY-PPIALKRGSTVL-DVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGD 380
+ P Y P+ L T D +IHK+L+K F+YA VWG SVK Q+VG DHVLED D
Sbjct: 301 QLPDYTSPVVLPCSHTAAEDFCTKIHKNLIKEFKYALVWGSSVKHNPQKVGKDHVLEDED 360
Query: 381 IVEI 384
+++I
Sbjct: 361 VIQI 364
>pir||T39192 probable GTP-binding protein - fission yeast (Schizosaccharomyces
pombe) >gi|6014426|emb|CAB57425.1| (AL121764) putative
GTP-binding protein [Schizosaccharomyces pombe]
Length = 366
Score = 228 bits (576), Expect = 7e-59
Identities = 131/369 (35%), Positives = 208/369 (55%), Gaps = 13/369 (3%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEG 80
T +KI+ +E A K+K T K +K KLA+L++EL GGG V + G
Sbjct: 3 TTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTG 62
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIE 140
+ +G P+VGKS L+ LTG E+A Y FTT +P ++ Y +IQ++++PG+IE
Sbjct: 63 IGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIE 122
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIR 200
GA G+G G Q++ V R + I IV+D+ + P+ +I+ E E GI++NK P I +
Sbjct: 123 GAKDGRGRGKQVITVARTCNLIFIVLDVLK-PMSHKRIIEEELEGFGIRLNKEPPNIVFK 181
Query: 201 RTPSGGI-VINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKK 259
+ GGI + N + D++E+ + E +++SA+I R T++D D L+ + V+
Sbjct: 182 KKERGGINITNTVPLTHIDLDEIRAVCSEYRVNSADIAFRCDATIDDLIDVLEGNRVYIP 241
Query: 260 AIIIANKGDAPGSK--DNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVF 317
A+ + NK D+ + D +++ A +P+ + N+D +KE ++D ++RV+
Sbjct: 242 ALYVLNKIDSISIEELDLIDRIPNA-------VPICGNRGWNIDELKETMWDYLNLVRVY 294
Query: 318 TKSPGEEPAY-PPIALKRG-STVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHV 375
T+ G EP Y P+ L+ G STV D IH + F++A VWGKSV +PG RVG HV
Sbjct: 295 TRPRGLEPDYSEPVILRTGHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHV 354
Query: 376 LEDGDIVEI 384
L D D+V I
Sbjct: 355 LLDEDVVTI 363
>pir||T42381 probable GTP-binding protein - fission yeast (Schizosaccharomyces
pombe) >gi|1749478|dbj|BAA13797.1| (D89135) similar to
Xenopus laevis developing GTP-binding protein DRG,
SWISS-PROT Accession Number P43690 [Schizosaccharomyces
pombe]
Length = 366
Score = 228 bits (574), Expect = 1e-58
Identities = 131/369 (35%), Positives = 208/369 (55%), Gaps = 13/369 (3%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEG 80
T +KI+ +E A K+K T K +K KLA+L++EL GGG V + G
Sbjct: 3 TTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTG 62
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIE 140
+ +G P+VGKS L+ LTG E+A Y FTT +P ++ Y +IQ++++PG+IE
Sbjct: 63 IGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIE 122
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIR 200
GA G+G G Q++ V R + I IV+D+ + P+ +I+ E E GI++NK P I +
Sbjct: 123 GAKDGRGRGKQVITVARTCNLIFIVLDVLK-PMSHKRIIEEELEGFGIRLNKEPPNIVFK 181
Query: 201 RTPSGGI-VINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKK 259
+ GGI + N + D++E+ + E +++SA+I R T++D D L+ + V+
Sbjct: 182 KKERGGINITNTVPLTHIDLDEIRAVCSEYRVNSADIAFRCDSTIDDLIDVLEGNRVYIP 241
Query: 260 AIIIANKGDAPGSK--DNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVF 317
A+ + NK D+ + D +++ A +P+ + N+D +KE ++D ++RV+
Sbjct: 242 ALYVLNKIDSISIEELDLIDRIPNA-------VPICGNRGWNIDELKETMWDYLNLVRVY 294
Query: 318 TKSPGEEPAY-PPIALKRG-STVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHV 375
T+ G EP Y P+ L+ G STV D IH + F++A VWGKSV +PG RVG HV
Sbjct: 295 TRPRGLEPDYSEPVILRTGHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHV 354
Query: 376 LEDGDIVEI 384
L D D+V I
Sbjct: 355 LLDEDVVTI 363
>gi|4758796 developmentally regulated GTP-binding protein 1; neural precursor
cell expressed, developmentally down-regulated 3 [Homo
sapiens] >gi|6685390|sp|Q9Y295|DRG1_HUMAN
DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 1 (DRG 1)
>gi|4127988|emb|CAA06775.1| (AJ005940) GTP-binding
protein [Homo sapiens] >gi|4218945|gb|AAD12240.1|
(AF078103) developmentally regulated GTP-binding protein
[Homo sapiens]
Length = 367
Score = 228 bits (574), Expect = 1e-58
Identities = 140/364 (38%), Positives = 208/364 (56%), Gaps = 10/364 (2%)
Query: 25 KIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGG-GYSLAVKKEGAAQ 83
KI +E A K+K T +K +LA+LR+EL + GG G V K G A+
Sbjct: 7 KIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVAKTGDAR 66
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
I VG P+VGKS LL L GV E A Y FTT +P ++ YK +IQL+++PG+IEGA
Sbjct: 67 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 126
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTP 203
GKG G Q++AV R + I IV+D+ + P+ KI+ E E GI++N + P I ++
Sbjct: 127 DGKGRGRQVIAVARTCNLILIVLDVLK-PLGHKKIIENELEGFGIRLNSKPPNIGFKKKD 185
Query: 204 SGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAII 262
GGI + + D V +L E KIH+A++T+R T +D D ++ + V+ I
Sbjct: 186 KGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIY 245
Query: 263 IANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPG 322
+ NK D + + E+L Y + +P+SA R N D + E ++D +++R++TK G
Sbjct: 246 VLNKID----QISIEELDIIY-KVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG 300
Query: 323 EEPAY--PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGD 380
+ P Y P + +TV D +IHK+L+K F+YA VWG SVK Q+VG DH LED D
Sbjct: 301 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED 360
Query: 381 IVEI 384
+++I
Sbjct: 361 VIQI 364
>gi|11417999 developmentally regulated GTP-binding protein 1 [Homo sapiens]
Length = 389
Score = 228 bits (574), Expect = 1e-58
Identities = 140/364 (38%), Positives = 208/364 (56%), Gaps = 10/364 (2%)
Query: 25 KIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGG-GYSLAVKKEGAAQ 83
KI +E A K+K T +K +LA+LR+EL + GG G V K G A+
Sbjct: 29 KIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVAKTGDAR 88
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
I VG P+VGKS LL L GV E A Y FTT +P ++ YK +IQL+++PG+IEGA
Sbjct: 89 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 148
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTP 203
GKG G Q++AV R + I IV+D+ + P+ KI+ E E GI++N + P I ++
Sbjct: 149 DGKGRGRQVIAVARTCNLILIVLDVLK-PLGHKKIIENELEGFGIRLNSKPPNIGFKKKD 207
Query: 204 SGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAII 262
GGI + + D V +L E KIH+A++T+R T +D D ++ + V+ I
Sbjct: 208 KGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIY 267
Query: 263 IANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPG 322
+ NK D + + E+L Y + +P+SA R N D + E ++D +++R++TK G
Sbjct: 268 VLNKID----QISIEELDIIY-KVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG 322
Query: 323 EEPAY--PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGD 380
+ P Y P + +TV D +IHK+L+K F+YA VWG SVK Q+VG DH LED D
Sbjct: 323 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED 382
Query: 381 IVEI 384
+++I
Sbjct: 383 VIQI 386
>gi|6681225 developmentally regulated GTP-binding protein 1 [Mus musculus]
>gi|416914|sp|P32233|DRG1_MOUSE DEVELOPMENTALLY
REGULATED GTP-BINDING PROTEIN 1 (DRG 1) (NEDD3 PROTEIN)
>gi|220507|dbj|BAA01555.1| (D10715) GTP-binding protein
[Mus musculus]
Length = 367
Score = 228 bits (574), Expect = 1e-58
Identities = 140/364 (38%), Positives = 208/364 (56%), Gaps = 10/364 (2%)
Query: 25 KIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGG-GYSLAVKKEGAAQ 83
KI +E A K+K T +K +LA+LR+EL + GG G V K G A+
Sbjct: 7 KIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVAKTGDAR 66
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
I VG P+VGKS LL L GV E A Y FTT +P ++ YK +IQL+++PG+IEGA
Sbjct: 67 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 126
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTP 203
GKG G Q++AV R + I IV+D+ + P+ KI+ E E GI++N + P I ++
Sbjct: 127 DGKGRGRQVIAVARTCNLILIVLDVLK-PLGHKKIIENELEGFGIRLNSKPPNIGFKKKD 185
Query: 204 SGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAII 262
GGI + + D V +L E KIH+A++T+R T +D D ++ + V+ I
Sbjct: 186 KGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIY 245
Query: 263 IANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPG 322
+ NK D + + E+L Y + +P+SA R N D + E ++D +++R++TK G
Sbjct: 246 VLNKID----QISIEELDIIY-KVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG 300
Query: 323 EEPAY--PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGD 380
+ P Y P + +TV D +IHK+L+K F+YA VWG SVK Q+VG DH LED D
Sbjct: 301 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED 360
Query: 381 IVEI 384
+++I
Sbjct: 361 VIQI 364
>gb|AAB53256.1| (U66408) GTP-binding protein [Arabidopsis thaliana]
>gi|2345150|gb|AAB67830.1| (AF014822) developmentally
regulated GTP binding protein [Arabidopsis thaliana]
Length = 399
Score = 227 bits (572), Expect = 2e-58
Identities = 132/368 (35%), Positives = 209/368 (55%), Gaps = 11/368 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I E+I+ +E A K+K TE Q+K K+A+LR +L + + GGG V K G
Sbjct: 3 IIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASGGGEGFEVTKYGH 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
++ L+G P+VGKS LL LTG E+A Y FTT IP +++Y D +IQL+++PG+IEG
Sbjct: 63 GRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
A+ GKG G Q++AV +++D + +V+D S+ +IL +E E G+++NK P+I ++
Sbjct: 123 ASEGKGRGRQVIAVAKSSDLVLMVLDASKSE-GHRQILTKELEAVGLRLNKTPPQIYFKK 181
Query: 202 TPSGGIVINGIENIKG-DINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
+GGI N + D ++L E KIH+AE+ RE T++DF D ++ + + K
Sbjct: 182 KKTGGISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDDFIDVIEGNRKYIKC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + K D G D V + I +S ++NLD + ++D ++RV++K
Sbjct: 242 VYVYIKIDVVGIDD-----VDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKP 296
Query: 321 PGEEPAY-PPIAL---KRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVL 376
G++P + P L + G TV D +H+ LVK+ +YA VWG S + Q G L
Sbjct: 297 QGQQPDFDEPFVLSSDRGGCTVEDFCNHVHRTLVKDMKYALVWGTSTRHNPQNCGLSQHL 356
Query: 377 EDGDIVEI 384
ED D+V+I
Sbjct: 357 EDEDVVQI 364
>pir||JC1349 GTP-binding protein DRG [validated] - mouse
Length = 367
Score = 226 bits (570), Expect = 3e-58
Identities = 139/364 (38%), Positives = 208/364 (56%), Gaps = 10/364 (2%)
Query: 25 KIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGG-GYSLAVKKEGAAQ 83
KI +E A K+K T +K +LA+LR+EL + GG G V K G A+
Sbjct: 7 KIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVAKTGDAR 66
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
I VG P+VGKS LL L GV E A Y FTT +P ++ YK +IQL+++PG+IEGA
Sbjct: 67 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 126
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTP 203
GKG G Q++AV R + I IV+D+ + P+ KI+ E E GI++N + P I ++
Sbjct: 127 DGKGRGRQVIAVARTCNLILIVLDVLK-PLGHKKIIENELEGFGIRLNSKPPNIGFKKKD 185
Query: 204 SGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAII 262
GGI + + D V +L E KIH+A++T+R T ++ D ++ + V+ I
Sbjct: 186 KGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADELIDVVEGNRVYIPCIY 245
Query: 263 IANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPG 322
+ NK D + + E+L Y + +P+SA R N D + E ++D +++R++TK G
Sbjct: 246 VLNKID----QISIEELDIIY-KVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG 300
Query: 323 EEPAY--PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGD 380
+ P Y P + +TV D +IHK+L+K F+YA VWG SVK Q+VG DH LED D
Sbjct: 301 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED 360
Query: 381 IVEI 384
+++I
Sbjct: 361 VIQI 364
>emb|CAC12607.1| (AL445067) GTP-binding protein [Thermoplasma acidophilum]
Length = 360
Score = 225 bits (568), Expect = 6e-58
Identities = 136/369 (36%), Positives = 215/369 (57%), Gaps = 14/369 (3%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYS-LAVKKE 79
TI E+I+ +E +K TE +K K+A+L+ E GG +S AV K
Sbjct: 3 TIEERIKEIEDEIKRTQYNKATEHHIGLLKAKIAKLQMEASASH----GGSHSGFAVPKS 58
Query: 80 GAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLI 139
G A + LVG PNVGKS LL LT + E DY FTT +PIP ++ YK +IQ++++PG+I
Sbjct: 59 GDATVALVGFPNVGKSSLLNRLTNSESEIGDYAFTTLQPIPGILEYKGAEIQILDLPGII 118
Query: 140 EGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEI 199
E A+ G G ++L+ +R AD I IV D+ I + +L E AGI VN++R +EI
Sbjct: 119 ENASYGSARGREILSAVRAADLIVIVTDVQAGGIDK---ILTELYNAGIVVNRKRRNVEI 175
Query: 200 RRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKK 259
R+T SGGI ++ +N+ D + + ++++E K+ +A++ +RE V++ED + L V+
Sbjct: 176 RKTTSGGIRLHRPKNVDIDEDYIKEIMKEFKLVNADVYIRENVSVEDIIETLQGRYVYIP 235
Query: 260 AIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTK 319
+I+ NK D S D + V YGE F+ VSAK ++ +KE ++ +IR++ +
Sbjct: 236 SIVAVNKIDMNPSFDTSQ--VSQYGEVFR---VSAKTGYGIEELKEGIFRSLNLIRIYLR 290
Query: 320 S-PGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLED 378
+ G P+ ++ G+TV +V +I++ ++ +FRYA V GK+ QRVG D+ L D
Sbjct: 291 NKAGVVDFQKPLIVREGTTVREVCRKINRSMIDSFRYAIVSGKNRPIGEQRVGIDYPLMD 350
Query: 379 GDIVEIHAR 387
DIV I +R
Sbjct: 351 EDIVTIISR 359
>gb|AAF79465.1|AC022492_9 (AC022492) F1L3.17 [Arabidopsis thaliana]
Length = 412
Score = 224 bits (566), Expect = 1e-57
Identities = 133/380 (35%), Positives = 210/380 (55%), Gaps = 22/380 (5%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I E+I+ +E A K+K TE Q+K K+A+LR +L + + GGG V K G
Sbjct: 3 IIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASGGGEGFEVTKYGH 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
++ L+G P+VGKS LL LTG E+A Y FTT IP +++Y D +IQL+++PG+IEG
Sbjct: 63 GRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPI------------KQMKILLREFERAGIK 189
A+ GKG G Q++AV +++D + +V+D S+ +IL +E E G++
Sbjct: 123 ASEGKGRGRQVIAVAKSSDLVLMVLDASKVSYGLYVHVNWYMSEGHRQILTKELEAVGLR 182
Query: 190 VNKRRPRIEIRRTPSGGIVINGIENIKG-DINEVMKMLREEKIHSAEITVREPVTLEDFA 248
+NK P+I ++ +GGI N + D ++L E KIH+AE+ RE T++DF
Sbjct: 183 LNKTPPQIYFKKKKTGGISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDDFI 242
Query: 249 DALDESLVWKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALY 308
D ++ + + K + + NK D G D V + I +S ++NLD + ++
Sbjct: 243 DVIEGNRKYIKCVYVYNKIDVVGIDD-----VDRLSRQPNSIVISCNLKLNLDRLLARMW 297
Query: 309 DVAEIIRVFTKSPGEEPAY-PPIAL---KRGSTVLDVAERIHKDLVKNFRYARVWGKSVK 364
D ++RV++K G++P + P L + G TV D +H+ LVK+ +YA VWG S +
Sbjct: 298 DEMGLVRVYSKPQGQQPDFDEPFVLSSDRGGCTVEDFCNHVHRTLVKDMKYALVWGTSTR 357
Query: 365 FPGQRVGPDHVLEDGDIVEI 384
Q G LED D+V+I
Sbjct: 358 HNPQNCGLSQHLEDEDVVQI 377
>pir||T09368 GTP-binding protein F23K16.150 - Arabidopsis thaliana
>gi|5042168|emb|CAB44687.1| (AL078620) GTP-binding-like
protein [Arabidopsis thaliana]
>gi|7270936|emb|CAB80615.1| (AL161595) GTP-binding-like
protein [Arabidopsis thaliana]
Length = 369
Score = 224 bits (564), Expect = 2e-57
Identities = 134/369 (36%), Positives = 206/369 (55%), Gaps = 11/369 (2%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYS--LAVKK 78
TI +KI+ +E A K+K T +K KLA+LR++L + GGG V K
Sbjct: 3 TIMQKIKEIEDEMAKTQKNKATSHHLGLLKAKLAKLRRDLLAPPTKGGGGGAGEGFDVTK 62
Query: 79 EGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGL 138
G +++ LVG P+VGKS LL LTG E A Y FTT IP ++ Y+ +IQL+++PG+
Sbjct: 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
Query: 139 IEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIE 198
IEGA GKG G Q+++ R + I IV+D + PI +++ +E E GI++NK P +
Sbjct: 123 IEGAKDGKGRGRQVISTARTCNCILIVLDAIK-PITHKRLIEKELEGFGIRLNKEPPNLT 181
Query: 199 IRRTPSGGIVINGIENIKG-DINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVW 257
R+ GGI + + D++ V + E ++H+A+IT+R T +D D ++ S ++
Sbjct: 182 FRKKDKGGINLTSTVAVTHLDLDTVKAICGEYRMHNADITLRYDATADDLIDVIEGSRIY 241
Query: 258 KKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVF 317
I NK D+ ++ ++ + PVSA NLD + + +++ ++ R++
Sbjct: 242 MPCIYAVNKIDSITLEE-----LEILDKLPHYCPVSAHLEWNLDGLLDKIWEYLDLTRIY 296
Query: 318 TKSPGEEPAY--PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHV 375
TK P Y P I + TV D RIHKD++K F+YA VWG S K QRVG +H
Sbjct: 297 TKPKAMNPDYDDPVILSSKKRTVEDFCIRIHKDMLKQFKYALVWGSSAKHKPQRVGKEHE 356
Query: 376 LEDGDIVEI 384
LED D+V+I
Sbjct: 357 LEDEDVVQI 365
>gb|AAF58591.1| (AE003823) 128up gene product [Drosophila melanogaster]
Length = 368
Score = 224 bits (564), Expect = 2e-57
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 10/368 (2%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYS-LAVKKE 79
TI EKI A+E A K+K T +K KLA+LR+EL + G G + V K
Sbjct: 3 TILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGGGTGEAGFEVAKT 62
Query: 80 GAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLI 139
G A++ VG P+VGKS LL L GV E A Y FTT +P + YK +IQL+++PG+I
Sbjct: 63 GDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 122
Query: 140 EGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEI 199
EGA GKG G Q++AV R + I +V+D + P+ K+L E E GI++NK+ P I
Sbjct: 123 EGAKDGKGRGRQVIAVARTCNLIFMVLDCLK-PLGHKKLLEHELEGFGIRLNKKPPNIYY 181
Query: 200 RRTPSGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWK 258
+R GGI +N + + D + V +L E KIH+A+IT+R T +D D ++ + ++
Sbjct: 182 KRKDKGGINLNSMVPQSELDTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYI 241
Query: 259 KAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFT 318
I + NK D + + E+L Y + +P+SA N D + E +++ + R++T
Sbjct: 242 PCIYLLNKID----QISIEELDVIY-KIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYT 296
Query: 319 KSPGEEPAY--PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVL 376
K G+ P Y P + +++ D ++H+ + K F+YA VWG SVK Q+VG +HVL
Sbjct: 297 KPKGQLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVL 356
Query: 377 EDGDIVEI 384
D D+V+I
Sbjct: 357 NDEDVVQI 364
>pir||T43254 GTP-binding protein - Thermoplasma acidophilum
>gi|1698846|gb|AAC44620.1| (U72850) GTP-binding protein
[Thermoplasma acidophilum]
Length = 360
Score = 223 bits (563), Expect = 2e-57
Identities = 135/369 (36%), Positives = 214/369 (57%), Gaps = 14/369 (3%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYS-LAVKKE 79
TI E+I+ +E +K TE +K K+A+L+ E GG +S AV K
Sbjct: 3 TIEERIKEIEDEIKRTQYNKATEHHIGLLKAKIAKLQMEASASH----GGSHSGFAVPKS 58
Query: 80 GAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLI 139
G A + LVG PNVGKS LL LT + E DY FTT +PIP ++ YK +IQ++++PG+I
Sbjct: 59 GDATVALVGFPNVGKSSLLNRLTNSESEIGDYAFTTLQPIPGILEYKGAEIQILDLPGII 118
Query: 140 EGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEI 199
E A+ G G ++L+ +R AD I IV D+ I + +L E AGI VN++R +EI
Sbjct: 119 ENASYGSARGREILSAVRAADLIVIVTDVQAGGIDK---ILTELYNAGIVVNRKRRNVEI 175
Query: 200 RRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKK 259
R+T SGGI ++ +N+ D + + ++++E K+ +A++ +RE V++ED + L V+
Sbjct: 176 RKTTSGGIRLHRPKNVDIDEDYIKEIMKEFKLVNADVYIRENVSVEDIIETLQGRYVYIP 235
Query: 260 AIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTK 319
+I+ NK D S D + V YGE F+ VSAK ++ +KE ++ +IR++ +
Sbjct: 236 SIVAVNKIDMNPSFDTSQ--VSQYGEVFR---VSAKTGYGIEELKEGIFRSLNLIRIYLR 290
Query: 320 S-PGEEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLED 378
+ G P+ ++ G+TV +V +I++ ++ +FRYA V GK+ RVG D+ L D
Sbjct: 291 NKAGVVDFQKPLIVREGTTVREVCRKINRSMIDSFRYAIVSGKNRPIGEHRVGIDYPLMD 350
Query: 379 GDIVEIHAR 387
DIV I +R
Sbjct: 351 EDIVTIISR 359
>gi|10946678 developmentally regulated GTP-binding protein 2 [Mus musculus]
>gi|8928105|sp|Q9QXB9|DRG2_MOUSE DEVELOPMENTALLY
REGULATED GTP-BINDING PROTEIN 2 (DRG 2)
>gi|6688758|emb|CAB65258.1| (AJ243590) GTP-binding
protein [Mus musculus]
Length = 364
Score = 221 bits (558), Expect = 9e-57
Identities = 126/365 (34%), Positives = 202/365 (54%), Gaps = 8/365 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I EKI +EK A K+K TE +K KLA+ R +L + + G V K G
Sbjct: 3 ILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKSGD 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
A++ L+G P+VGKS L +T E+A Y FTT IP ++ YK IQL+++PG+IEG
Sbjct: 63 ARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
AA G+G G Q++AV R AD + +++D ++ + Q +L +E E GI++NK +P I +
Sbjct: 123 AAQGRGRGRQVIAVARTADVVVMMLDATKGDV-QRSLLEKELESVGIRLNKHKPNIYFKP 181
Query: 202 TPSGGIVINGIENIKGDINEVMKM-LREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
GGI N + +++++ L E KI +AE+ RE + +DF D + + V+
Sbjct: 182 KKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDDFIDVIVGNRVYMPC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + NK D ++ V + + +S ++NLD + E L++ + ++TK
Sbjct: 242 LYVYNKIDQISMEE-----VDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKK 296
Query: 321 PGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDG 379
G+ P + I L++G++V V RIH+ L F+YA VWG S K+ QRVG H +E
Sbjct: 297 RGQRPDFTDAIILRKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHE 356
Query: 380 DIVEI 384
D+++I
Sbjct: 357 DVIQI 361
>gi|4557537 developmentally regulated GTP-binding protein 2 [Homo sapiens]
>gi|1706518|sp|P55039|DRG2_HUMAN DEVELOPMENTALLY
REGULATED GTP-BINDING PROTEIN 2 (DRG 2)
>gi|1082424|pir||A55014 GTP-binding protein DRG homolog
- human >gi|577779|emb|CAA56730.1| (X80754) GTP-binding
protein [Homo sapiens]
Length = 364
Score = 221 bits (557), Expect = 1e-56
Identities = 127/365 (34%), Positives = 202/365 (54%), Gaps = 8/365 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I EKI +EK A K+K TE +K KLA+ R +L + + G V K G
Sbjct: 3 ILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKSGD 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
A++ L+G P+VGKS L +T E+A Y FTT IP ++ YK IQL+++PG+IEG
Sbjct: 63 ARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
AA GKG G Q++AV R AD I +++D ++ + Q +L +E E GI++NK +P I +
Sbjct: 123 AAQGKGRGRQVIAVARTADVIIMMLDATKGEV-QRSLLEKELESVGIRLNKHKPNIYFKP 181
Query: 202 TPSGGIVINGIENIKGDINEVMKM-LREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
GGI N + +++++ L E KI +AE+ RE + ++F D + + V+
Sbjct: 182 KKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMPC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + NK D ++ V + + +S ++NLD + E L++ + ++TK
Sbjct: 242 LYVYNKIDQISMEE-----VDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKK 296
Query: 321 PGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDG 379
G+ P + I L++G++V V RIH+ L F+YA VWG S K+ QRVG H +E
Sbjct: 297 RGQRPDFTDAIILRKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHE 356
Query: 380 DIVEI 384
D+++I
Sbjct: 357 DVIQI 361
>sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422452|pir||S33467 GTP-binding
protein 128up - fruit fly (Drosophila melanogaster)
>gi|630861|pir||S42582 GTP-binding protein 128up - fruit
fly (Drosophila melanogaster) >gi|311343|emb|CAA50701.1|
(X71866) GTP-binding protein [Drosophila melanogaster]
Length = 368
Score = 220 bits (556), Expect = 2e-56
Identities = 136/368 (36%), Positives = 208/368 (55%), Gaps = 10/368 (2%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYS-LAVKKE 79
TI EKI A+E A K+K T +K +A+LR+EL + G G + V K
Sbjct: 3 TILEKISAIESEMARTQKNKATSAHLGLLKANVAKLRRELISPKGGGGGTGEAGFEVAKT 62
Query: 80 GAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLI 139
G A++ VG P+VGKS LL L GV E A Y FTT +P + YK +IQL+++PG+I
Sbjct: 63 GDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 122
Query: 140 EGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEI 199
EGA GKG G Q++AV R + I +V+D + P+ K+L E E GI++NK+ P I
Sbjct: 123 EGAKDGKGRGRQVIAVARTCNLIFMVLDCLK-PLGHKKLLEHELEGFGIRLNKKPPNIYY 181
Query: 200 RRTPSGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWK 258
+R GGI +N + + D + V +L E KIH+A+IT+R T +D D ++ + ++
Sbjct: 182 KRKDKGGINLNSMVPQSELDTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYI 241
Query: 259 KAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFT 318
I + NK D + + E+L Y + +P+SA N D + E +++ + R++T
Sbjct: 242 PCIYLLNKID----QISIEELDVIY-KIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYT 296
Query: 319 KSPGEEPAY--PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVL 376
K G+ P Y P + +++ D ++H+ + K F+YA VWG SVK Q+VG +HVL
Sbjct: 297 KPKGQLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVL 356
Query: 377 EDGDIVEI 384
D D+V+I
Sbjct: 357 NDEDVVQI 364
>gi|6319281 similar to Xenopus GTP-binding protein DRG; Fun11p [Saccharomyces
cerevisiae] >gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL
40.7 KD PROTEIN IN PYK1-SNC1 INTERGENIC REGION
>gi|1077475|pir||S51983 FUN11 protein - yeast
(Saccharomyces cerevisiae) >gi|595548|gb|AAC04995.1|
(U12980) Fun11p [Saccharomyces cerevisiae]
Length = 369
Score = 220 bits (556), Expect = 2e-56
Identities = 136/370 (36%), Positives = 215/370 (57%), Gaps = 12/370 (3%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLA--VKK 78
T EKI+A+E A K+K T Q+K KLA+LR+EL GGG + V +
Sbjct: 3 TTVEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVAR 62
Query: 79 EGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGL 138
G A + VG P+VGKS LL LTG + E+A+Y FTT +P ++ YK +IQ++++PG+
Sbjct: 63 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGI 122
Query: 139 IEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIE 198
I+GA G+G G Q++AV R + + I++D+++ P+ +I+ +E E GI++NK P I
Sbjct: 123 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNK-PLHHKQIIEKELEGVGIRLNKTPPDIL 181
Query: 199 IRRTPSGGI-VINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALD-ESLV 256
I++ GGI + N + +E+ ++ E +I+SAEI R T++D D L+ S
Sbjct: 182 IKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRR 241
Query: 257 WKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRV 316
+ AI + NK D+ S + E L + +P+S+ + NLD + + ++D ++R+
Sbjct: 242 YMPAIYVLNKIDSL-SIEELELLYRIP----NAVPISSGQDWNLDELLQVMWDRLNLVRI 296
Query: 317 FTKSPGEEPAY-PPIALKRG-STVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDH 374
+TK G+ P + P+ L+ +V D +IHK LV +FR A V+G SVK Q VG H
Sbjct: 297 YTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSH 356
Query: 375 VLEDGDIVEI 384
+LED D+V I
Sbjct: 357 ILEDEDVVTI 366
>gb|AAC33135.1| (AF035177) GTP-binding protein [Oncorhynchus tshawytscha]
Length = 364
Score = 220 bits (556), Expect = 2e-56
Identities = 127/365 (34%), Positives = 209/365 (56%), Gaps = 8/365 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I EKI +E+ + K+K TE +K KLA+ R +L + + G V K G
Sbjct: 3 ILEKIGEIEREISRTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSAGAKGEGFDVMKSGD 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
A++ L+G P+VGKS L +T E+A Y FTT IP ++ Y IQL+++PG+IEG
Sbjct: 63 ARVALIGFPSVGKSTFLSLMTATASEAASYEFTTLTCIPGVIEYNGANIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
A+ GKG G Q++AV R AD + +++D ++ + Q K+L +E E GI++N+ +P I +
Sbjct: 123 ASQGKGRGRQVIAVARTADVVIMMLDATKGDV-QRKLLEKELESVGIRLNRSKPNIYFKP 181
Query: 202 TPSGGIVINGIENIKGDINEVMKM-LREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
GG+ N + + +++++ L E KI +AE+ RE T +DF D + + V+
Sbjct: 182 KKGGGLSYNSMVPLTMCSEKLVQLILHEYKIFNAEVLFREDSTPDDFIDVIVGNRVYMPC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + NK D + + E++ + E ++ +S ++NLD + E L++ +I ++TK
Sbjct: 242 LYVYNKVD----QISIEEVDRLAHEPHSVV-ISCGMKLNLDFLLERLWEYLALICLYTKK 296
Query: 321 PGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDG 379
GE P + I ++RG++V V RIH+ L F+YA VWG S KF QRVG H++E
Sbjct: 297 RGERPDFSDAIIMRRGASVEHVCHRIHRTLASQFKYALVWGTSTKFDPQRVGLTHIMEHE 356
Query: 380 DIVEI 384
D+++I
Sbjct: 357 DVIQI 361
>pir||T31553 hypothetical protein T28D6.6 - Caenorhabditis elegans
>gi|5832862|emb|CAB55097.1| (AL117202) contains
similarity to Pfam domain: PF01018 (GTP1/OBG family),
Score=576.0, E-value=7.7e-170, N=1~cDNA EST yk64c12.3
comes from this gene~cDNA EST yk151h4.3 comes from this
gene~cDNA EST yk211a3.3 comes from this gene~cDNA EST
yk466c6.3 come> >gi|6018399|emb|CAB57908.1| (Z81134)
contains similarity to Pfam domain: PF01018 (GTP1/OBG
family), Score=576.0, E-value=7.7e-170, N=1~cDNA EST
yk64c12.3 comes from this gene~cDNA EST yk151h4.3 comes
from this gene~cDNA EST yk211a3.3 comes from this
gene~cDNA EST yk466c6.3 comes >
Length = 366
Score = 220 bits (555), Expect = 2e-56
Identities = 138/367 (37%), Positives = 210/367 (56%), Gaps = 9/367 (2%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEG 80
++ +KI +E A K+K T +K KLA+LR++L + G G V K G
Sbjct: 2 SVLQKIADIEAEMARTQKNKATNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTG 61
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIE 140
A+I VG P+VGKS LL L GV E A Y FTT +P ++ YK +IQL+++PG+IE
Sbjct: 62 DARIGFVGFPSVGKSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIE 121
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIR 200
GA GKG G Q++AV R I +V+D+ + P++ K+L E E GI++NK+ P I +
Sbjct: 122 GAKDGKGRGKQVIAVARTCSLILMVLDVMK-PLQHKKLLEYELEGFGIRLNKQPPNIGYK 180
Query: 201 RTPSGGIVING-IENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKK 259
R GGI + + + D++ V +L E +IH+A+IT+R T ED D ++ + ++
Sbjct: 181 RKEKGGINLTMLVPQSELDLDLVKSILAEYRIHNADITLRYDATSEDLIDVIEGNRIYIP 240
Query: 260 AIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTK 319
I + NK D + + E+L Y +P+SA + N D + E +++ +IR++TK
Sbjct: 241 CIYVLNKID----QISIEELDIIY-RIPHTVPISAHHKWNFDDLLEKVWEYLNLIRIYTK 295
Query: 320 SPGEEPAY-PPIALK-RGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLE 377
G+ P Y PI L ++ D+ +IHK L K+F+ A VWG S K QRVG DHVL
Sbjct: 296 PKGQLPDYSQPIVLNAERKSIEDLCTKIHKSLQKDFKCALVWGASAKHNPQRVGRDHVLI 355
Query: 378 DGDIVEI 384
D D+V++
Sbjct: 356 DEDVVQV 362
>sp|P17103|YRB1_HALCU HYPOTHETICAL 40 KD GTP-BINDING PROTEIN IN RIBOSOMAL PROTEIN GENE
CLUSTER 5'REGION >gi|76329|pir||QQHS4C GTP-binding
protein DRG homolog - Halobacterium salinarum (strain
cutirubrum) >gi|43450|emb|CAA33176.1| (X15078) ORF
protein [Halobacterium cutirubrum]
>gi|10580655|gb|AAG19503.1| (AE005042) GTP-binding
protein DRG; Drg [Halobacterium sp. NRC-1]
Length = 370
Score = 216 bits (544), Expect = 4e-55
Identities = 132/370 (35%), Positives = 205/370 (54%), Gaps = 7/370 (1%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
+ E I +LE+ A P +K TE ++K KLAE +++LE Q Q GGG AV++ G
Sbjct: 3 LEEDIESLEEEIANTPYNKSTEAHIGRLKAKLAEQKEKLEAQ-QSGSGGGGGYAVEQHGD 61
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
A + LVG P+VGKS L+ A+T D E Y FTT P M+ Y+ IQL++VPGLIEG
Sbjct: 62 ATVALVGFPSVGKSSLINAMTNADSEVGAYEFTTLNVNPGMLEYRGANIQLLDVPGLIEG 121
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
AA G+G G ++L+VIR AD + V+ E I+Q L E I+V+ P + +RR
Sbjct: 122 AAGGRGGGKEILSVIRGADLVIFVLSAFE--IEQYDRLAEELYNVNIRVDAEPPSVTVRR 179
Query: 202 TPSGGIVINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAI 261
GI +N ++ D + V +LRE +A +T+R +++ D + ++ V+ ++
Sbjct: 180 KGKDGIDVNTSGELELDSDTVKGILRERGFINANVTIRGNPSVDRLIDGVMDNRVYMPSL 239
Query: 262 IIANKGD--APGSKDNYEKLVKAYG-ERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFT 318
+ NK D P + ++ +G I +SA + LD +KE ++ +IR++
Sbjct: 240 VTVNKVDLIEPSYAGTMKDALRDHGVSPDDAIFISAAEEKGLDVLKERMWRALGLIRIYM 299
Query: 319 KSPGE-EPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLE 377
PG P+ ++RG TV D +++ L + FR+ARV G S + Q+VG DHVLE
Sbjct: 300 DKPGRGVDREEPLIIRRGETVDDAVQKLGGTLDERFRFARVTGPSAQHDDQQVGRDHVLE 359
Query: 378 DGDIVEIHAR 387
D D++ + AR
Sbjct: 360 DEDVLRVVAR 369
>gi|6321612 Ygr173wp [Saccharomyces cerevisiae]
>gi|1723727|sp|P53295|YG3Y_YEAST HYPOTHETICAL 41.0 KD
PROTEIN IN YIP1-CBP4 INTERGENIC REGION
>gi|2120158|pir||S64487 GTP-binding protein DRG homolog
- yeast (Saccharomyces cerevisiae)
>gi|1323306|emb|CAA97199.1| (Z72958) ORF YGR173w
[Saccharomyces cerevisiae]
Length = 368
Score = 214 bits (539), Expect = 1e-54
Identities = 129/372 (34%), Positives = 210/372 (55%), Gaps = 12/372 (3%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYS-LAVKKEG 80
I +KI+A+E+ A K+K TE +K KLA R++L GGG S V K G
Sbjct: 3 IIDKIKAIEEEMARTQKNKATEHHLGLLKGKLARYRQQLLADEAGSGGGGGSGFEVAKSG 62
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIE 140
A++VL+G P+VGKS LL +T E A Y FTT +P ++ Y+ +IQ+V++PG+I
Sbjct: 63 DARVVLIGYPSVGKSSLLGKITTTKSEIAHYAFTTLTSVPGVLKYQGAEIQIVDLPGIIY 122
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIR 200
GA+ GKG G Q++A R AD + +V+D ++ Q L +E E GI++NK +P I +
Sbjct: 123 GASQGKGRGRQVVATARTADLVLMVLDATKSE-HQRASLEKELENVGIRLNKEKPNIYYK 181
Query: 201 RTPSGGIVINGIENIKGDINE--VMKMLREEKIHSAEITVR-EPVTLEDFADALDES-LV 256
+ +GG+ + K ++ E + +LR+ +IH+AE+ VR + T++DF D ++E
Sbjct: 182 KKETGGVKVTFTSPPKTNLTEQAIKMILRDYRIHNAEVLVRDDQCTIDDFIDVINEQHRN 241
Query: 257 WKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRV 316
+ K + + NK DA S + +KL + + +S + + L V E ++ + RV
Sbjct: 242 YVKCLYVYNKIDAV-SLEEVDKLAR----EPNTVVMSCEMDLGLQDVVEEIWYQLNLSRV 296
Query: 317 FTKSPGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHV 375
+TK G P + P+ ++ ST+ D+ IH+D F+YA VWG S K Q+ G +H
Sbjct: 297 YTKKRGVRPVFDDPLVVRNNSTIGDLCHGIHRDFKDKFKYALVWGSSAKHSPQKCGLNHR 356
Query: 376 LEDGDIVEIHAR 387
++D D+V + A+
Sbjct: 357 IDDEDVVSLFAK 368
>sp|P34280|YKK3_CAEEL HYPOTHETICAL 64.3 KD GTP-BINDING PROTEIN C02F5.3 IN CHROMOSOME III
>gi|630509|pir||S44605 C02F5.3 protein - Caenorhabditis
elegans >gi|289610|gb|AAA27918.1| (L14745) homology with
GTP binding protein; putative [Caenorhabditis elegans]
Length = 573
Score = 213 bits (538), Expect = 2e-54
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 10/370 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I EKI +E + K+K TE +K KLA+ R++L + + G V K G
Sbjct: 3 ILEKIAEIEHEISRTQKNKATEYHLGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKSGD 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
A++ +VG P+VGKS LL ++T E+A Y FTT IP +++Y IQL+++PG+IEG
Sbjct: 63 ARVAMVGFPSVGKSTLLSSMTSTHSEAAGYEFTTLTCIPGVISYNGANIQLLDLPGIIEG 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
A+ GKG G Q+++V + AD I +++D + +Q +L RE E GI++NK+ P I +++
Sbjct: 123 ASQGKGRGRQVISVAKTADLILMMLDAGKSD-QQKMLLERELEAVGIRLNKKPPNIYVKQ 181
Query: 202 TPSGGI-VINGIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
GG+ N + + +M +L E KI +A++ RE T+++F D + + V+
Sbjct: 182 KKVGGVKFTNTVPLTHCNEKLIMTVLHEYKIFNADVIFREDCTVDEFIDVIQGNRVYMTC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + NK D S + ++L + + +S + +N+D + E +++ ++RV+TK
Sbjct: 242 LYVYNKVDQI-SIEEIDRLARMPHH----VVISCEMNLNMDYLLEKMWEYLALVRVYTKK 296
Query: 321 PGEEPAYPP---IALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLE 377
PG P P I L+ G+T+ +H+ + RYA VWG S KF QRVG H L+
Sbjct: 297 PGNAPDLGPEDGIILRGGATIEHCCHALHRSIAAQLRYAIVWGTSTKFSPQRVGLHHKLD 356
Query: 378 DGDIVEIHAR 387
D+++I R
Sbjct: 357 HEDVIQIMRR 366
>gb|AAF77220.1|AC009601_14 (AC009601) L165.8 [Leishmania major]
Length = 374
Score = 204 bits (513), Expect = 2e-51
Identities = 122/374 (32%), Positives = 211/374 (55%), Gaps = 18/374 (4%)
Query: 24 EKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGG--GYSLAVKKEGA 81
E+ +A+E+ A K+K TE ++K +LA ++ E+ + + G G V+K G
Sbjct: 5 ERRKAIEEEIARTQKNKKTEYHVGRLKGQLARIKTEMMENAARAAGAKAGDGFDVRKSGD 64
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
+ LVG P+VGKS L +T + E+A Y FTT IP + +K +IQ++++PG+IEG
Sbjct: 65 VRCALVGFPSVGKSSFLSCVTQTESEAAGYEFTTLTCIPGKLMHKGTEIQILDLPGIIEG 124
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
AA GKG G Q++A R AD I +++D ++ ++ KI E E GI++N+R P + ++
Sbjct: 125 AAEGKGRGRQVIATARTADMIILMLDAAKAEAQRSKI-ESELESVGIRLNQRFPNVTFKK 183
Query: 202 TPSGGIVI----NGIENIKGDINEVMK-MLREEKIHSAEITVREPVTLEDFADALDESLV 256
S + + + + +G +++K +L++ I +A++ +RE +T++ F D ++ +
Sbjct: 184 KTSCSMNVVSYSSTVPQTRGVSEQMVKEVLKDYGIFNADVALREDITVDQFIDVIEGNRK 243
Query: 257 WKKAIIIANKGD--APGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEII 314
+ + + NK D D +L + + +S +N+D V + +++ II
Sbjct: 244 YMPCLYVYNKIDTITMEEMDRLSRLPHS-------VVLSLHWDLNVDEVIDEVWEHLNII 296
Query: 315 RVFTKSPGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPD 373
R++TK GE P + P +KR ++V + +RIHKD+V F+YA VWG S K QRVG
Sbjct: 297 RIYTKKHGEHPDFGKPFVVKRDASVEHICKRIHKDIVSRFKYALVWGTSAKHQPQRVGIS 356
Query: 374 HVLEDGDIVEIHAR 387
H LED D+++I R
Sbjct: 357 HELEDEDVLQIMLR 370
>sp|P32235|GTP1_SCHPO GTP-BINDING PROTEIN 1 >gi|419815|pir||JT0741 GTP-binding protein 1
- fission yeast (Schizosaccharomyces pombe)
>gi|173396|gb|AAA35308.1| (L00671) GTP-binding protein
[Schizosaccharomyces pombe]
Length = 364
Score = 202 bits (509), Expect = 5e-51
Identities = 124/364 (34%), Positives = 202/364 (55%), Gaps = 10/364 (2%)
Query: 24 EKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGAAQ 83
EKI+ +E K+K TE +K KLA+LR +L + + G V K G A+
Sbjct: 5 EKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDAR 64
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
+ +G P+VGKS LL A+T +A Y FTT IP ++ Y +IQ++++PG+IEGA+
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGAS 124
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSED-PIKQMKILLREFERAGIKVNKRRPRIEIRRT 202
G+G G Q ++ R AD I +V + PI + KI E E+ GI++N++ P + +
Sbjct: 125 QGRG-GRQAVSAARTADLILMVFGCYKKLPISEKKIEY-ELEQVGIRLNRQPPNVTLTIK 182
Query: 203 PSGGIVIN-GIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAI 261
+GGI N + D +L E +IH+A+I +RE +T++DF D + + + +
Sbjct: 183 KNGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDLVMGNRRYINCL 242
Query: 262 IIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSP 321
+K DA S + ++L + K + +S ++NLD +KE +++ + R++TK
Sbjct: 243 YCYSKIDAV-SLEEVDRLARLP----KSVVISCNMKLNLDFLKERIWEELNLYRIYTKRK 297
Query: 322 GEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGD 380
GE P + + + +GST+ V RIH+ L + +YA VWG S K Q VG +H +E+GD
Sbjct: 298 GEMPDFSEALIIHKGSTIEQVCNRIHRTLAEQLKYALVWGTSAKHSPQVVGLNHRVEEGD 357
Query: 381 IVEI 384
+V I
Sbjct: 358 VVTI 361
>gi|11427872 developmentally regulated GTP-binding protein 2 [Homo sapiens]
Length = 307
Score = 198 bits (498), Expect = 1e-49
Identities = 108/309 (34%), Positives = 176/309 (56%), Gaps = 8/309 (2%)
Query: 78 KEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPG 137
K G A++ L+G P+VGKS L +T E+A Y FTT IP ++ YK IQL+++PG
Sbjct: 2 KSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPG 61
Query: 138 LIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRI 197
+IEGAA GKG G Q++AV R AD I +++D ++ + Q +L +E E GI++NK +P I
Sbjct: 62 IIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEV-QRSLLEKELESVGIRLNKHKPNI 120
Query: 198 EIRRTPSGGIVINGIENIKGDINEVMKM-LREEKIHSAEITVREPVTLEDFADALDESLV 256
+ GGI N + +++++ L E KI +AE+ RE + ++F D + + V
Sbjct: 121 YFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRV 180
Query: 257 WKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRV 316
+ + + NK D ++ V + + +S ++NLD + E L++ + +
Sbjct: 181 YMPCLYVYNKIDQISMEE-----VDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCI 235
Query: 317 FTKSPGEEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHV 375
+TK G+ P + I L++G++V V RIH+ L F+YA VWG S K+ QRVG H
Sbjct: 236 YTKKRGQRPDFTDAIILRKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHT 295
Query: 376 LEDGDIVEI 384
+E D+++I
Sbjct: 296 MEHEDVIQI 304
>pir||T06251 GTP binding protein - garden pea >gi|2345148|gb|AAB67829.1|
(AF014821) developmentally regulated GTP binding protein
[Pisum sativum]
Length = 399
Score = 194 bits (489), Expect = 1e-48
Identities = 121/368 (32%), Positives = 194/368 (51%), Gaps = 11/368 (2%)
Query: 22 IPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA 81
I EKI+ +E A K+K TE Q+K K+A+LR +L + + GGG V K G
Sbjct: 3 IIEKIKEIEFEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKFGH 62
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
++ L+G P+VGKS LL LTG E+A Y FTT IP + ++ + L+
Sbjct: 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGLYTTMILRFSCLIFLELLRV 122
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRR 201
+ G Q++AV +++D + +V+D S+ +IL +E E G+++NKR P+I ++
Sbjct: 123 LLKARDCGRQVIAVAKSSDIVLMVLDASKSE-GHRQILTKELEAVGLRLNKRPPQIYFKK 181
Query: 202 TPSGGIVINGIENIKG-DINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKA 260
+GGI N + D ++L E KIH+AEI RE T++DF D ++ + + K
Sbjct: 182 KKTGGISFNSTMPLTHVDEKLCYQILHEYKIHNAEILFREDATVDDFIDVIEGNRKYMKC 241
Query: 261 IIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKS 320
+ + N D G D V + + +S ++NLD + ++D ++RV+TK
Sbjct: 242 VYVYNLIDVVGIDD-----VDRLPRQPNSVVISCNLKLNLDRLLSRMWDEMGLVRVYTKP 296
Query: 321 PGEEPAY-PPIAL---KRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVL 376
G++P + P+ L + G +V D IH+ LVK+ +Y VWG + Q G HVL
Sbjct: 297 QGQQPDFSDPVVLSADRGGCSVEDFCNHIHRSLVKDVKYVLVWGIMARHYPQHCGLSHVL 356
Query: 377 EDGDIVEI 384
D D+V+I
Sbjct: 357 RDEDVVQI 364
>emb|CAA19048.2| (AL023587) gtp-binding protein 1. [Schizosaccharomyces pombe]
Length = 346
Score = 190 bits (479), Expect = 2e-47
Identities = 116/349 (33%), Positives = 194/349 (55%), Gaps = 9/349 (2%)
Query: 24 EKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGAAQ 83
EKI+ +E K+K TE +K KLA+LR +L + + G V K G A+
Sbjct: 5 EKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDAR 64
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
+ +G P+VGKS LL A+T +A Y FTT IP ++ Y +IQ++++PG+IEGA+
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGAS 124
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTP 203
G+G G Q ++ R AD I +V+D ++ ++ KI E E+ GI++N++ P + +
Sbjct: 125 QGRG-GRQAVSAARTADLILMVLDATKAADQREKIEY-ELEQVGIRLNRQPPNVTLTIKK 182
Query: 204 SGGIVIN-GIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAII 262
+GGI N + D +L E +IH+A+I +RE +T++DF D + + + +
Sbjct: 183 NGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDLVMGNRRYINCLY 242
Query: 263 IANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPG 322
+K DA S + ++L + K + +S ++NLD +KE +++ + R++TK G
Sbjct: 243 CYSKIDAV-SLEEVDRLARLP----KSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKG 297
Query: 323 EEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRV 370
E P + + +++GST+ V RIH+ L + +YA VWG S K Q V
Sbjct: 298 EMPDFSEALIVRKGSTIEQVCNRIHRTLAEQLKYALVWGTSAKHSPQVV 346
>pir||T40599 hypothetical protein SPBC649.06 - fission yeast
(Schizosaccharomyces pombe) (fragment)
Length = 347
Score = 190 bits (479), Expect = 2e-47
Identities = 116/349 (33%), Positives = 194/349 (55%), Gaps = 9/349 (2%)
Query: 24 EKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGAAQ 83
EKI+ +E K+K TE +K KLA+LR +L + + G V K G A+
Sbjct: 5 EKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDAR 64
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAA 143
+ +G P+VGKS LL A+T +A Y FTT IP ++ Y +IQ++++PG+IEGA+
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGAS 124
Query: 144 LGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTP 203
G+G G Q ++ R AD I +V+D ++ ++ KI E E+ GI++N++ P + +
Sbjct: 125 QGRG-GRQAVSAARTADLILMVLDATKAADQREKIEY-ELEQVGIRLNRQPPNVTLTIKK 182
Query: 204 SGGIVIN-GIENIKGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAII 262
+GGI N + D +L E +IH+A+I +RE +T++DF D + + + +
Sbjct: 183 NGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDLVMGNRRYINCLY 242
Query: 263 IANKGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPG 322
+K DA S + ++L + K + +S ++NLD +KE +++ + R++TK G
Sbjct: 243 CYSKIDAV-SLEEVDRLARLP----KSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKG 297
Query: 323 EEPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRV 370
E P + + +++GST+ V RIH+ L + +YA VWG S K Q V
Sbjct: 298 EMPDFSEALIVRKGSTIEQVCNRIHRTLAEQLKYALVWGTSAKHSPQVV 346
>gb|AAG01361.1|AC068666_8 (AC068666) L165.8 [Leishmania major]
Length = 230
Score = 110 bits (273), Expect = 2e-23
Identities = 68/234 (29%), Positives = 129/234 (55%), Gaps = 16/234 (6%)
Query: 162 IAIVIDLSEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTPSGGIVI----NGIENIKG 217
I +++D ++ ++ KI E E GI++N+R P + ++ S + + + + +G
Sbjct: 1 IILMLDAAKAEAQRSKIE-SELESVGIRLNQRFPNVTFKKKTSCSMNVVSYSSTVPQTRG 59
Query: 218 DINEVMK-MLREEKIHSAEITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSK--D 274
+++K +L++ I +A++ +RE +T++ F D ++ + + + + NK D + D
Sbjct: 60 VSEQMVKEVLKDYGIFNADVALREDITVDQFIDVIEGNRKYMPCLYVYNKIDTITMEEMD 119
Query: 275 NYEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPGEEPAY-PPIALK 333
+L + + +S +N+D V + +++ IIR++TK GE P + P +K
Sbjct: 120 RLSRLPHS-------VVLSLHWDLNVDEVIDEVWEHLNIIRIYTKKHGEHPDFGKPFVVK 172
Query: 334 RGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEIHAR 387
R ++V + +RIHKD+V F+YA VWG S K QRVG H LED D+++I R
Sbjct: 173 RDASVEHICKRIHKDIVSRFKYALVWGTSAKHQPQRVGISHELEDEDVLQIMLR 226
>emb|CAA74319.1| (Y13986) GTP-binding protein [Ostertagia circumcincta]
Length = 140
Score = 104 bits (256), Expect = 2e-21
Identities = 60/139 (43%), Positives = 82/139 (58%)
Query: 21 TIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEG 80
+I +KI+ +E A K+K T +K K A+LR+EL + GGG V K G
Sbjct: 2 SILQKIQDIEDEMARTQKNKATNAHLGMLKAKWAKLRQELIAPKGGGGGGGEGFDVAKTG 61
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIE 140
A++ VG P+VGKS LL L GV E A Y FTT +P ++ YK +IQL+++PG+IE
Sbjct: 62 DARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIE 121
Query: 141 GAALGKGMGPQLLAVIRNA 159
GA GKG G Q++AV A
Sbjct: 122 GAKDGKGRGKQVIAVALRA 140
>pir||G72586 hypothetical protein APE1164 - Aeropyrum pernix (strain K1)
>gi|5104835|dbj|BAA80149.1| (AP000061) 410aa long
hypothetical protein [Aeropyrum pernix]
Length = 410
Score = 99.1 bits (243), Expect = 8e-20
Identities = 114/418 (27%), Positives = 179/418 (42%), Gaps = 127/418 (30%)
Query: 80 GAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEP-----------------IP-- 120
G+ + LVG NVGKS A T V V+ + PF T EP +P
Sbjct: 4 GSIVLGLVGKTNVGKSTFFAAATEVPVKIENRPFVTIEPNVGVGYARKRCAHVELGLPRC 63
Query: 121 ------AMMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDL------ 168
+ ++ + ++L++V GL+ GA G+G+G + L +R ADA+ +V+D
Sbjct: 64 DPVNSLCIEGWRFIPVKLLDVAGLVPGAHRGRGLGNRFLDDVRKADALLLVVDASGSTDP 123
Query: 169 --------SEDPIKQMKILLREFERAGIKVNKRRPRIEIRRTPSGGIV---------ING 211
S DP++++ ++L E ++ R RR + G V ++G
Sbjct: 124 EGVPVKPGSYDPVEEVGLMLGEIYEWMLQNLARDWERFARRVDTAGNVDLVTALSQRLSG 183
Query: 212 IENIKGDINEVMKM--LREEKIHSAEITVREPVTLEDFADALDESLVWKKAIIIANKGDA 269
E +G + V++ L E+++ S RE + L F + E K A+I+ANK D
Sbjct: 184 FEIPRGVVAGVLEETGLGEKRLSSWS---REDLRL--FVKLVLER--GKPAVILANKVDV 236
Query: 270 PGSKDNYEKLVKAYGERFKIIPVSAKKRINL----------------------------- 300
PG+++N E+L +Y ++P SA + L
Sbjct: 237 PGAEENVERLGSSY-PGIPVVPASALAELMLRRLAREGRVRYIPGDPDFTVKDPGGLGGK 295
Query: 301 ----------------------DAVKEALYDVAEIIRVFTKSPGEEP---------AYPP 329
A+ A++DV ++I V+ P E+P P
Sbjct: 296 ALKALELVRERVMKRWGGTGVVQAINTAVFDVLDMIAVY---PVEDPNRYTDREGRILPD 352
Query: 330 IAL-KRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEIHA 386
+ L KRGST D+A RIH DL K F YA V K+ QRVG + L+DGD+V+I A
Sbjct: 353 VILVKRGSTPRDLAYRIHTDLGKTFLYA-VNAKT----KQRVGEGYRLQDGDVVKIVA 405
>pir||T42690 hypothetical protein DKFZp434N1827.1 - human (fragment)
>gi|6453535|emb|CAB61403.1| (AL133085) hypothetical
protein [Homo sapiens]
Length = 150
Score = 98.7 bits (242), Expect = 1e-19
Identities = 56/152 (36%), Positives = 89/152 (57%), Gaps = 7/152 (4%)
Query: 235 EITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVKAYGERFKIIPVSA 294
++T+R T +D D ++ + V+ I + NK D + + E+L Y +P+SA
Sbjct: 1 DVTLRSDATADDLIDVVEGNRVYIPCIYVLNKID----QISIEELDIIYKVPH-CVPISA 55
Query: 295 KKRINLDAVKEALYDVAEIIRVFTKSPGEEPAYP-PIALKRG-STVLDVAERIHKDLVKN 352
R N D + E ++D +++R++TK G+ P Y P+ L +TV D +IHK+L+K
Sbjct: 56 HHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKE 115
Query: 353 FRYARVWGKSVKFPGQRVGPDHVLEDGDIVEI 384
F+YA VWG SVK Q+VG DH LED D+++I
Sbjct: 116 FKYALVWGLSVKHNPQKVGKDHTLEDEDVIQI 147
>pir||C64466 GTP-binding protein - Methanococcus jannaschii
>gi|1591973|gb|AAB99340.1| (U67573) GTP-binding protein,
member of GTP1/OBG-family [Methanococcus jannaschii]
Length = 393
Score = 96.3 bits (236), Expect = 5e-19
Identities = 103/402 (25%), Positives = 166/402 (40%), Gaps = 114/402 (28%)
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTT----------TEPIPA---------- 121
A I LVG PNVGKS + ALT E +YPFTT T P P
Sbjct: 2 AMIGLVGKPNVGKSTMFNALTEKPAEIGNYPFTTIQPNKGIAYITSPCPCKELGVKCNPR 61
Query: 122 ----MMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS-------- 169
+ + + +++++V GL+ GA G+GMG + L +R ADA +V+D S
Sbjct: 62 NSKCIDGIRHIPVEVIDVAGLVPGAHEGRGMGNKFLDDLRQADAFILVVDASGKTDAEGN 121
Query: 170 ----EDPIKQMKILLREFERAGIKV-NKRRPRIEIRRTPSGGIV------INGIENIKGD 218
DP++ +K LL E + + K ++ R IV ++G+ + D
Sbjct: 122 PTENYDPVEDVKFLLNEIDMWIYSILTKNWDKLARRAQQEKNIVKALKDQLSGLNIDEDD 181
Query: 219 INEVMKMLREEKIHSAEITVREPVTLEDFAD-ALDESLVWKKAIIIANKGDAPGSKDNYE 277
I ++ + E I E ED + A + K II ANK D P ++ N E
Sbjct: 182 IKMAIRDMDESPIKWTE---------EDLLNLAKKLRKISKPMIIAANKADHPDAEKNIE 232
Query: 278 KLVKAYGERFKIIPVSAKKRINL------------------------------------- 300
+L K + + + +IP SA+ + L
Sbjct: 233 RLKKEFKD-YIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRAFDYIKD 291
Query: 301 -----------DAVKEALYDVAEIIRVF-----TKSPGEEPAYPPIA--LKRGSTVLDVA 342
+ + +A +D+ ++I V+ K ++ P A +K+GST D+A
Sbjct: 292 FLKKYGGTGVQECINKAYFDLLDMIVVYPVEDENKFSDKQGNVLPDAFLVKKGSTARDLA 351
Query: 343 ERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEI 384
++H +L + F YA K + RVG D+ L+ DI++I
Sbjct: 352 YKVHTELGEKFIYAIDAKKKI-----RVGADYELKHNDIIKI 388
>pir||C75402 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459140|gb|AAF10955.1|AE001984_5 (AE001984)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 365
Score = 88.5 bits (216), Expect = 1e-16
Identities = 90/373 (24%), Positives = 156/373 (41%), Gaps = 88/373 (23%)
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQ-------------- 129
I +VGLPNVGKS L A+T +A+YPF T EP + D +
Sbjct: 5 IGIVGLPNVGKSTLFNAITRAGALAANYPFATIEPNVGRVTVPDERLSALSQVFTKGERV 64
Query: 130 -------IQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLRE 182
++ V++ GL++GA+ G+G+G Q LA IR DAIA V+ EDP
Sbjct: 65 PPIIPTFVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIAHVVRCFEDPNV-------- 116
Query: 183 FERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLR------EEKIHSAEI 236
+ V R ++ T + +++ + ++ + K + +E++ AE
Sbjct: 117 -----VHVAGRVDPLDDIETINTELILADLAGLEKRAQNLQKKAKGGDKDAKEQLELAEQ 171
Query: 237 TVR-----EPVTLEDFADALDES---LVWKKAIIIANKGDAPGSKDN-YEKLVKAYG--E 285
++ +P + + + + K I +AN G+ + DN Y + V+ Y E
Sbjct: 172 IIQVLGEGKPARAGSYEGKIPKDFGLITIKPVIYVANVGEDDLTGDNEYVQKVREYAAAE 231
Query: 286 RFKIIPVSAK----------------------KRINLDAVKEALYDVAEIIRVFTKSPGE 323
+++ +SA+ + LD + + Y+ +I T E
Sbjct: 232 GAQVVKISAQIEGELAEMPEDEAAAFLHDLGVEESGLDQLVKVGYETLGLITFITSGEKE 291
Query: 324 EPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARV--WGKSVKFPG----------QRVG 371
A+ +++G + A IH DL + F A V W K V+ G + G
Sbjct: 292 VRAW---TIRKGEKAPEAAGEIHSDLERGFIRAEVIEWQKMVEAGGWAPAKAKGWVRTEG 348
Query: 372 PDHVLEDGDIVEI 384
D+V++DGDI+ +
Sbjct: 349 KDYVMQDGDIMNV 361
>pir||H71165 probable GTP-binding protein - Pyrococcus horikoshii
>gi|3256930|dbj|BAA29613.1| (AP000002) 397aa long
hypothetical GTP-binding protein [Pyrococcus horikoshii]
Length = 397
Score = 87.8 bits (214), Expect = 2e-16
Identities = 107/402 (26%), Positives = 169/402 (41%), Gaps = 111/402 (27%)
Query: 83 QIVLVGLPNVGKSELLRALTGVDVESADYPFTTTE--------------------PIPAM 122
+I +VG PNVGKS A T VDVE A+YPFTT E P P
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 123 MNYKD----VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS--------- 169
Y++ + +++V+V GL+ GA G+G+G + L +R A A+ V+D +
Sbjct: 62 YEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQP 121
Query: 170 ---EDPIKQMKILLREFERAGIKV-----NKRRPRIEIRRTPSGGIVINGIENIKGDINE 221
DP++ ++ L RE + + +K RI++++ + + I + N+
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEND 181
Query: 222 VMKMLREEKIHSAEITVREPVTLED--FADALDESLVWKKAIIIANKGDAPGSKDNYEKL 279
V E +H + +D A A + V K +I ANK DA S + ++L
Sbjct: 182 VW-----EAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADA-ASDEQIKRL 235
Query: 280 VKAYGER-FKIIPVSA--------------------------------KKRINLDAVKEA 306
V+ +R + +IP SA K++ L +KE
Sbjct: 236 VREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEK 295
Query: 307 LYD------VAEII-RVFTKSPGEEPAYP-----------------PIALKRGSTVLDVA 342
+ D V E+I RV P YP +K+GST D+A
Sbjct: 296 VLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLA 355
Query: 343 ERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEI 384
++H DL K F YA + ++ + RVG D+ L+ DIV+I
Sbjct: 356 FKVHTDLGKGFLYA-INARTKR----RVGEDYELQFNDIVKI 392
>pir||H75066 GTP-binding protein PAB1357 - Pyrococcus abyssi (strain Orsay)
>gi|5458942|emb|CAB50429.1| (AJ248287) GTP-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 397
Score = 87.0 bits (212), Expect = 3e-16
Identities = 101/402 (25%), Positives = 169/402 (41%), Gaps = 107/402 (26%)
Query: 83 QIVLVGLPNVGKSELLRALTGVDVESADYPFTTTE--------------------PIPAM 122
+I +VG PNVGKS A T VDVE A+YPFTT + P P
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
Query: 123 MNYKD----VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDL---------- 168
Y++ + +++++V GL+ GA G+G+G + L +R A A+ V+D+
Sbjct: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Query: 169 --SEDPIKQMKILLREFERAGIKV-----NKRRPRIEIRRTPSGGIVINGIENIKGDINE 221
+ DPI+ ++ L RE + + +K RI+++R + + I N+
Sbjct: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEND 181
Query: 222 VMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVK 281
V + + + S + T+ L FA + + K II ANK DA S++ +L+K
Sbjct: 182 VWEAMHRLGLPS-DPTLWSQEDLLAFASEIRR--INKPMIIAANKADA-ASEEQINRLIK 237
Query: 282 AYGER-FKIIPVSAKKRINL-------------------------DAVKEALYDVAEIIR 315
+R + ++P SA + L + K+AL + E +
Sbjct: 238 EGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVL 297
Query: 316 VFTKSPGEE--------------PAYP-----------------PIALKRGSTVLDVAER 344
S G + P YP +K+GS D+A +
Sbjct: 298 DRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFK 357
Query: 345 IHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEIHA 386
+H DL + F YA + K+ + R+G D+ L+ DI++I A
Sbjct: 358 VHTDLGRGFLYA-INAKTKR----RIGEDYELQFNDIIKIVA 394
>pir||E70354 probable GTP-binding protein - Aquifex aeolicus
>gi|2983235|gb|AAC06832.1| (AE000698) hypothetical
protein [Aquifex aeolicus]
Length = 370
Score = 87.0 bits (212), Expect = 3e-16
Identities = 100/368 (27%), Positives = 168/368 (45%), Gaps = 81/368 (22%)
Query: 86 LVGLPNVGKSELLRALTG-VDVESADYPFTTTEP------IPAMMNYKDVQIQ------- 131
+VGLPNVGKS L ALT + ++A+YPF T EP +P YK +I+
Sbjct: 7 IVGLPNVGKSTLFNALTKTMKAQAANYPFCTIEPNVGVVEVPDERLYKLAEIEKSQKITP 66
Query: 132 ----LVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIV-----------IDLSEDPIKQM 176
V++ GL++GA+ G+G+G Q L+ IR DA+A+V ++ S DP++
Sbjct: 67 TFIEFVDIAGLVKGASKGEGLGNQFLSHIREVDAVAMVLRAFEDENIVHVEGSVDPVRDK 126
Query: 177 KILLREFERAGIKVNKRRPRIE-IRRTPSGG--IVINGIENIKGDINEVMKMLREEKIHS 233
+I+ E E + RIE +++ GG +E++ + E+++ L + ++
Sbjct: 127 EIV--EIELIAKDLESVNRRIEKVQKVAKGGDKKAREEMEHLNA-LKEILENLEPIRKYA 183
Query: 234 AEITVREPVTLEDFADALDESLVWKKAIIIAN--KGDAPGSKDN-YEKLVK--AYGERFK 288
++ P TLE +A L K + IAN + D P + N + + +K A E
Sbjct: 184 DKL---PPETLE-YAKKTLFLLTVKPVMYIANISEKDLPEGEGNPHVERIKEMANQENAP 239
Query: 289 IIPVSAK----------------------KRINLDAVKEALYDVAEIIRVFTKSPGEEPA 326
++ +SA+ K L+ V Y + ++I FT E A
Sbjct: 240 VVVISAELEAQLAGLSEEEQKEMLEAYGLKEPGLNKVIRTGYRLLDLITFFTAGEREARA 299
Query: 327 YPPIALKRGSTVLDVAERIHKDLVKNFRYARV-----------WGKSVKFPGQRV-GPDH 374
+ +KRG+ A +IH D+ + F A V W K+ + R+ G D+
Sbjct: 300 W---TVKRGTKAPQAAGKIHSDMERGFIAAEVISYEDLIKAGSWAKAKEQGLIRLEGKDY 356
Query: 375 VLEDGDIV 382
++DGD+V
Sbjct: 357 EIQDGDVV 364
>gb|AAF97355.1| (AY005820) Obg-like protein [Thermococcus zilligii]
Length = 397
Score = 84.7 bits (206), Expect = 2e-15
Identities = 102/404 (25%), Positives = 166/404 (40%), Gaps = 111/404 (27%)
Query: 83 QIVLVGLPNVGKSELLRALTGVDVESADYPFTTTE--------------------PIPAM 122
++ +VG PNVGKS A T VDV+ A+YPFTT E P P
Sbjct: 2 EVGVVGKPNVGKSTFFSAATLVDVDIANYPFTTIEANVGVTYAIADHPCKELGCRPNPQN 61
Query: 123 MNYKD----VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS--------- 169
YKD + +++++V GL+ GA G+G+G + L +R A A+ VID +
Sbjct: 62 YEYKDGTALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVIDATGKTDAEGQP 121
Query: 170 ---EDPIKQMKILLREFERAGIKVNKR-----RPRIEIRRTPSGGIVINGIENIKGDINE 221
DP++ ++ L RE + + + K+ RI+++ + + + I +
Sbjct: 122 TDHHDPVEDIEFLEREIDYWMLGILKKGWEKFAKRIKLQHMKLEQAIADHLSGIGVKEED 181
Query: 222 VMKMLREEKIHSAEITVREPVTLEDFADALDESL--VWKKAIIIANKGDAPGSKDNYEKL 279
V E IH + +D AL L + K II ANK DA S + E+L
Sbjct: 182 VW-----EAIHRLGLGDDPTKWTDDELFALVRELRKINKPMIIAANKADA-ASDEQIERL 235
Query: 280 VKAYGER-FKIIPVSAKKRINL-------------------------------------- 300
K +R + +IP SA + L
Sbjct: 236 KKEGEKRGYLVIPTSAAAELTLRKAARAGFIDYIPGSSDFRILKEMNPQQEKALQLIKER 295
Query: 301 -----------DAVKEALYDVAEIIRVFTKSPGEE------PAYPPI-ALKRGSTVLDVA 342
+ + A++++ ++I V+ + P + L +GST D+A
Sbjct: 296 VLERFGSTGVQEVINRAVFELLKLIPVYPVQDENKLTDQFGNVLPHVYLLPKGSTPRDLA 355
Query: 343 ERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEIHA 386
++H DL + F YA V ++ +RVG D+ LE DI++I A
Sbjct: 356 YKVHTDLGRTFLYA-VNART----HRRVGDDYKLEFNDIIKIVA 394
>dbj|BAB07770.1| (AP001520) GTP-binding protein [Bacillus halodurans]
Length = 366
Score = 84.3 bits (205), Expect = 2e-15
Identities = 95/368 (25%), Positives = 155/368 (41%), Gaps = 85/368 (23%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQ-------------- 131
+VGLPNVGKS L A+T ESA+YPF T +P ++ D ++Q
Sbjct: 7 IVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDPRLQKLTELVNPKKTVPT 66
Query: 132 ---LVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDL-----------SEDPIKQMK 177
++ G++EGA+ G+G+G Q L+ IR DAI+ V+ S DPI+ +
Sbjct: 67 AFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFDDENITHVSGSVDPIRDIS 126
Query: 178 ILLREFERAGIK-VNKRRPRIE-IRRTPSGGIV--INGIENIKGDINEVMKMLREEKIHS 233
++ E A ++ V+KR R++ + +T V + +E +K E+ S
Sbjct: 127 VINLELILADLESVDKRFSRVQKLAKTKDKEAVAELEVLEKLKDAFE------NEKPARS 180
Query: 234 AEITVREPVTLEDFADALDESLVWKKAIIIAN--KGDAPGSKDN-YEKLVKAYG--ERFK 288
E T + ++ L K + +AN + D DN + + VKA+ E +
Sbjct: 181 IEFTEEQQKIVKGL-----HLLTSKPVLYVANVSEDDVLSPDDNPFVQKVKAFAAEENSE 235
Query: 289 IIPVSAK----------------------KRINLDAVKEALYDVAEIIRVFTKSPGEEPA 326
+I VSAK + LD + A Y + + FT E A
Sbjct: 236 VIVVSAKIEEEIAELDGEEKAMFLEELGIQESGLDQLIRAAYSLLGLQTYFTAGEQEVRA 295
Query: 327 YPPIALKRGSTVLDVAERIHKDLVKNFRYAR-------VWGKSVKFPGQR-----VGPDH 374
+ ++G+ A IH D K F A V S+ +R G ++
Sbjct: 296 W---TFRKGTKAPQAAGIIHSDFEKGFIRAETVSYNDLVEAGSMAVAKERGKVRLEGKEY 352
Query: 375 VLEDGDIV 382
V++DGD++
Sbjct: 353 VVQDGDVI 360
>sp|P47270|Y024_MYCGE PROBABLE GTP-BINDING PROTEIN MG024 >gi|1361525|pir||F64202 probable
GTP-binding protein - Mycoplasma genitalium
>gi|3844633|gb|AAC71240.1| (U39681) GTP-binding protein,
putative [Mycoplasma genitalium]
Length = 367
Score = 83.1 bits (202), Expect = 5e-15
Identities = 88/358 (24%), Positives = 150/358 (41%), Gaps = 66/358 (18%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQI--------------- 130
+VGLPNVGKS L A+T + VE A+YPF T EP ++N D ++
Sbjct: 6 IVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNTGIVNVSDERLDKLASLINPEKIVYT 65
Query: 131 --QLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQMK 177
+ V++ GL++GA+ G+G+G Q LA IR D I V+ + DP+ +
Sbjct: 66 TFRFVDIAGLVKGASQGQGLGNQFLANIREVDLICHVVRCFQDKKIVHVNNTIDPVFDFE 125
Query: 178 ILLREFERAGIKVNKRRPRIEIRRTPSGG-----------IVINGIENIKGDINEVMKML 226
I++ E +A ++ R R+ SG IV+NG++ + I + +
Sbjct: 126 IIVNELIQADFELITNRIGKLKRKAESGDKIAKEEFVLLEIVLNGLKQGQMPI-QTLSES 184
Query: 227 REEKIHSAEITVREPVTL-----EDFADALDESLVWKKAIIIANKGDAPGSKDNYEKL-- 279
+ I S + +P+ + E+ LD + KK ++ P + +
Sbjct: 185 ELKTIKSLNLLTAKPILIVANVSENDLLNLDNNEALKKLNAFLDQKKIPKAITVCSLIEK 244
Query: 280 ----VKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRG 335
+K ++ + + K L+ V +A Y + FT E A+ K+G
Sbjct: 245 ELSGLKLEQRQYFLDELGLKNYSGLNRVIQAAYQTLNLWSFFTFGKKEVRAW---TFKKG 301
Query: 336 STVLDVAERIHKDLVKNFRYARV--WG--------KSVKFPG--QRVGPDHVLEDGDI 381
A +IH D K F V W + K G + G +++++DGD+
Sbjct: 302 WNAPQCAGQIHSDFEKGFIKVEVISWDQLFAMKSLQEAKKQGLIRLEGKNYLIKDGDV 359
>pir||B72418 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980588|gb|AAD35192.1|AE001696_6 (AE001696)
conserved hypothetical protein [Thermotoga maritima]
Length = 435
Score = 82.7 bits (201), Expect = 6e-15
Identities = 74/244 (30%), Positives = 120/244 (48%), Gaps = 30/244 (12%)
Query: 68 KGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKD 127
KG L ++ + A + LVG PNVGKS L+ ++ + A+YPFTT P ++ Y D
Sbjct: 151 KGESRWLELELKILADVGLVGYPNVGKSSLISRISNARPKIANYPFTTLIPNLGVVKYDD 210
Query: 128 VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS----EDPIKQMKILLREF 183
+ ++PGLIEGA+ G G+G L + IA VID+S EDP++ ++ E
Sbjct: 211 FSFVVADIPGLIEGASEGVGLGNVFLRHVERCYLIAHVIDVSGYEREDPVRDYFVIREEM 270
Query: 184 ERAGIKVNKRRPRIEIRRTPSGGIVINGIENI-KGDINEVMKMLREEKIHSAEITVREPV 242
++ +P I +V N I+ I K ++ +++K LR + T RE +
Sbjct: 271 KKYS-PFLLEKPEI---------VVANKIDLIGKEELEKILKRLR-------DATNREVI 313
Query: 243 TLEDFADALDESLVWKKAIIIAN-KGDAPGSKDNYEKLVKAYGERFKIIPVSAKKRINLD 301
+ + LV K A I+ K + P K+ EK VK ++ +P ++ +L+
Sbjct: 314 PVSAVTGEGIDLLVSKLASIVREMKVEKPERKE--EKFVKP-SPVWRRLP----EKFHLE 366
Query: 302 AVKE 305
VKE
Sbjct: 367 VVKE 370
>pir||G82870 GTP-binding protein UU595 [imported] - Ureaplasma urealyticum
>gi|6899606|gb|AAF31009.1|AE002158_7 (AE002158)
GTP-binding protein [Ureaplasma urealyticum]
Length = 368
Score = 82.3 bits (200), Expect = 8e-15
Identities = 90/356 (25%), Positives = 151/356 (42%), Gaps = 63/356 (17%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQI--------------- 130
LVGLPNVGKS L +T VE+A+YPF T EP ++N D ++
Sbjct: 7 LVGLPNVGKSTLFNTITNSRVEAANYPFATIEPNIGIVNINDPRLKRLASLVVPDKIVPT 66
Query: 131 --QLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQMK 177
+ V++ GL++GA+ G+G+G Q L IR+ DAI V+ + D + +
Sbjct: 67 TFKFVDIAGLVKGASQGEGLGNQFLNNIRDVDAICHVVRCFDDKSITHVHNKIDALSDIH 126
Query: 178 ILLREFERAGIKVNKRRPRIEIRRTPSGG-------IVINGIENI--KGDINEVMKMLRE 228
++ E + + + ++R ++ SG +++ IE KG + +K+ +E
Sbjct: 127 VINYELILSDLDIIEKRISRIKKKADSGDKDARREYLILFNIEEALKKGQLASSVKLTKE 186
Query: 229 EK--IHSAEITVREPVTL-----EDFADALDESLVWKKAIIIANKGDAP----GSKDNYE 277
E I+S + +P+ E+ D + + K A DA +K YE
Sbjct: 187 ELKIINSFNLITLKPILYIANISENEISNPDLNKEYLKVKKYAQDNDARCVALSAKIEYE 246
Query: 278 KLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRGST 337
+ + I K LD + + YD+ + FT E A+ I G +
Sbjct: 247 ISILDEESKSIFIQDLGIKTTGLDEIVKQTYDLLNLKTYFTYGKQEVRAWTFI---NGMS 303
Query: 338 VLDVAERIHKDLVKNFRYARVW----------GKSVKFPG--QRVGPDHVLEDGDI 381
+ A IH D K F A + ++VK G + G ++++DGDI
Sbjct: 304 APECAGIIHSDFEKGFIKAEIMHYDDLISLGSEQAVKEAGKIRMEGKSYLMKDGDI 359
>pir||D70197 GTP-binding protein obg - Lyme disease spirochete
>gi|2688719|gb|AAC67127.1| (AE001177) GTP-binding
protein (obg) [Borrelia burgdorferi]
Length = 328
Score = 79.6 bits (193), Expect = 6e-14
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 71 GYSLAVKKEG--AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDV 128
G SL+V+ E A I LVGLPN GKS LL +T A+YPFTT P M+
Sbjct: 148 GNSLSVRLELFLVADIGLVGLPNAGKSSLLNRITSAKSRVANYPFTTKIPHLGMLRRSYD 207
Query: 129 QIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-DPIKQMKILLREFERAG 187
+ + ++PG+I+GA+ G G+G + L I +A+VID+SE + ++ ILL E +
Sbjct: 208 DLIIADIPGIIKGASFGVGLGTKFLKHIAKTKILALVIDISEANFLESYNILLNELKSYS 267
Query: 188 IKV-NKRR 194
K+ NK++
Sbjct: 268 HKLFNKKK 275
>pir||T40281 gtp-binding protein 1 - fission yeast (Schizosaccharomyces pombe)
>gi|2950451|emb|CAA17801.1| (AL022071) gtp-binding
protein 1 [Schizosaccharomyces pombe]
Length = 135
Score = 79.6 bits (193), Expect = 6e-14
Identities = 37/98 (37%), Positives = 61/98 (61%), Gaps = 1/98 (1%)
Query: 288 KIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPP-IALKRGSTVLDVAERIH 346
K + +S ++NLD +KE +++ + R++TK GE P + + +++GST+ V RIH
Sbjct: 35 KSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALIVRKGSTIEQVCNRIH 94
Query: 347 KDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEI 384
+ L + +YA VWG S K Q VG +H +E+GD+V I
Sbjct: 95 RTLAEQLKYALVWGTSAKHSPQVVGLNHRVEEGDVVTI 132
>pir||A64591 probable GTP-binding protein gtp1 - Helicobacter pylori (strain
26695) >gi|2313689|gb|AAD07637.1| (AE000571) GTP-binding
protein (gtp1) [Helicobacter pylori 26695]
Length = 366
Score = 79.2 bits (192), Expect = 7e-14
Identities = 94/369 (25%), Positives = 159/369 (42%), Gaps = 87/369 (23%)
Query: 86 LVGLPNVGKSELLRALTGV-DVESADYPFTTTEPIPAMMNYKDVQ--------------- 129
+VGLPNVGKS ALT + +SA+YPF T EP A++N D +
Sbjct: 7 IVGLPNVGKSSTFNALTKTQNAQSANYPFCTIEPNKAIVNVPDRRLDALAQIVKPERILH 66
Query: 130 --IQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQM 176
++ V++ GLI+GA+ G+G+G Q LA I+ + I V+ E DP+ +
Sbjct: 67 SVVEFVDIAGLIKGASKGEGLGNQFLANIKECEVILQVVRCFEDDNITHVNDKIDPLNDI 126
Query: 177 KILLREFERAGI-KVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAE 235
+ + E A I ++KR R++ +++ K D +++ K H E
Sbjct: 127 ETIELELILADIAALDKRIDRLQ-----------KALKSSK-DAKNLLECALSLKTHLEE 174
Query: 236 ITVRE--PVTLEDFADALDESLVW---KKAIIIANKGDAP-GSKDNYEKLVK--AYGERF 287
+ + P+ + LD+ L + KK I +AN G+ + + + K VK A +
Sbjct: 175 LKPAKTFPLNTSEAFLELDKELRFLSHKKMIYVANVGEEDLNALNEHAKKVKNHAKEQNS 234
Query: 288 KIIPVSAKKRINL-----DAVKEALYDVA-----------------EIIRVFTKSPGEEP 325
+ + + AK + D VKE L + +I FT E
Sbjct: 235 EFVALCAKLEEEMVSMSGDEVKEFLQSLGVEESGLEKTIRLSFKELGLINYFTAGVKEVR 294
Query: 326 AYPPIALKRGSTVLDVAERIHKDLVKNFRYARV--WGKSVKFPGQR----------VGPD 373
++ +K+GS+ A IHKD K F A + + + G+ G D
Sbjct: 295 SW---TIKKGSSAPVAAGVIHKDFEKGFIRAETISYDDFIAYKGEAGAKEKGALRIEGKD 351
Query: 374 HVLEDGDIV 382
++++DGD++
Sbjct: 352 YIVQDGDVL 360
>pir||A72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981794|gb|AAD36315.1|AE001779_17 (AE001779)
conserved hypothetical protein [Thermotoga maritima]
Length = 357
Score = 79.2 bits (192), Expect = 7e-14
Identities = 87/372 (23%), Positives = 153/372 (40%), Gaps = 98/372 (26%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQL------------- 132
+VGLPN GKS LT V + +PF T EP ++ D +I++
Sbjct: 3 IVGLPNAGKSSFFNFLTDNSVPAESFPFCTIEPNVGILVVPDERIEILAKNEGSKKVVHP 62
Query: 133 ----VEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSED----------------P 172
V++ GL++GA+ G+G+G Q L I D IA V+ L ED
Sbjct: 63 FVEVVDIAGLVKGASKGEGLGNQFLDHISKVDVIAHVVRLFEDGRVSHPYQNVDPKRDIE 122
Query: 173 IKQMKILLREFERAGIKVNKRRPRIEIRRT--PSGGIVINGIENIKGDINEVMK------ 224
I + +++L++ E ++ K R+++ RT + ++N++ +++ K
Sbjct: 123 IVETELILKDLETVQKRLEK---RMKVARTGDKEAKREVELLQNLREFLSQGKKASKFPR 179
Query: 225 --MLREEKIHSAEITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVKA 282
EE I S + +P L D LDE K+ +I E++VK
Sbjct: 180 HDRFEEEVIESLFLLTDKPQILVFNVDELDEE---KRKLI--------------EEIVKE 222
Query: 283 YGERFKIIPVSAKKRINLDAVKEA--------------------LYDVAEIIRVFTKSPG 322
E + II V ++ + +EA + + +IR T +
Sbjct: 223 KDEEYIIINVKLEEELKFLPEEEAEVFRREYNLFGDKRKEFFEKVLKLLNLIRFLTATQN 282
Query: 323 EEPAYPPIALKRGSTVLDVAERIHKDLVKNFRYARV--WGKSVKFPG----------QRV 370
E ++ +K+GST + A IH D+ K F V + + V+F +
Sbjct: 283 EARSW---TIKKGSTAYEAAGLIHSDIQKGFIKVEVIPFERYVEFGSLKKAREAGAVETH 339
Query: 371 GPDHVLEDGDIV 382
G D+++ +GD++
Sbjct: 340 GKDYIVREGDVI 351
>pir||B75563 GTP-binding protein Obg - Deinococcus radiodurans (strain R1)
>gi|6457748|gb|AAF09676.1|AE001871_8 (AE001871)
GTP-binding protein Obg [Deinococcus radiodurans]
Length = 438
Score = 78.8 bits (191), Expect = 1e-13
Identities = 41/108 (37%), Positives = 64/108 (58%), Gaps = 7/108 (6%)
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQ-------IQLVE 134
A + LVG PN GKS LL AL+ + ADYPFTT PI ++ +D Q + +
Sbjct: 160 ADVGLVGYPNAGKSSLLAALSRANPAIADYPFTTLSPILGVVQREDEQGVSLDERFTMAD 219
Query: 135 VPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQMKILLRE 182
+PG+IEGA+ GKG+G + L I + V+D++ +P+++++ L E
Sbjct: 220 IPGIIEGASEGKGLGLEFLRHISRTRLLVYVLDVTRNPVEELQQLQAE 267
>sp|P75088|Y024_MYCPN PROBABLE GTP-BINDING PROTEIN MG024 HOMOLOG (B01_ORF362)
>gi|2146318|pir||S73454 probable GTP-binding protein
yyaF - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1673787|gb|AAB95776.1| (AE000015) similar to GTPases
[Mycoplasma pneumoniae]
Length = 362
Score = 78.4 bits (190), Expect = 1e-13
Identities = 53/149 (35%), Positives = 79/149 (52%), Gaps = 30/149 (20%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQI--------------- 130
+VGLPNVGKS L A+T + VE A+YPF T EP ++N D ++
Sbjct: 6 IVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNAGIVNVIDERLDKLASLIKPDKVTHT 65
Query: 131 --QLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQMK 177
+ V++ GL++GA+ G+G+G Q LA IR D I V+ E DP+ +
Sbjct: 66 TFRFVDIAGLVKGASKGEGLGNQFLANIREVDLICHVVRCYEDKKIVHVNNQVDPVFDFE 125
Query: 178 ILLREFERAGIK-VNKRRPRIEIRRTPSG 205
I++ E +A I+ VN R +I+ R+ SG
Sbjct: 126 IIVNELIQADIEVVNTRIGKIK-RKAESG 153
>pir||PC7024 hypothetical 218 protein - Acholeplasma laidlawii (fragment)
Length = 218
Score = 78.4 bits (190), Expect = 1e-13
Identities = 50/144 (34%), Positives = 78/144 (53%), Gaps = 29/144 (20%)
Query: 84 IVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKD---------------- 127
I +VGLPNVGKS L A+T V +A+YPF T +P +++ KD
Sbjct: 4 IGIVGLPNVGKSTLFNAITKSQVTAANYPFATIDPNVGVVHVKDERLEKLAAIYKSGKII 63
Query: 128 -VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQ 175
I+ +++ GL++GA+ G+G+G Q L+ IR DAIA VI E DP++
Sbjct: 64 PTTIEFIDIAGLVKGASSGEGLGNQFLSHIRQVDAIAHVIRCFEDSEITHVEGKVDPLRD 123
Query: 176 MKILLREFERAGIK-VNKRRPRIE 198
++I+ E + ++ V+KR R+E
Sbjct: 124 LEIIEIELRLSDLESVDKRLARLE 147
>pir||E71920 hypothetical protein jhp0516 - Helicobacter pylori (strain J99)
>gi|4155073|gb|AAD06109.1| (AE001485) putative
[Helicobacter pylori J99]
Length = 366
Score = 76.5 bits (185), Expect = 5e-13
Identities = 92/369 (24%), Positives = 158/369 (41%), Gaps = 87/369 (23%)
Query: 86 LVGLPNVGKSELLRALTGV-DVESADYPFTTTEPIPAMMNYKDVQ--------------- 129
+VGLPNVGKS ALT + +SA+YPF T EP A++N D +
Sbjct: 7 IVGLPNVGKSSTFNALTKTQNAQSANYPFCTIEPNKAIVNVPDRRLDALAQIVKPERILH 66
Query: 130 --IQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQM 176
++ V++ GLI+GA+ G+G+G Q LA I+ + I V+ E DP+ +
Sbjct: 67 SVVEFVDIAGLIKGASKGEGLGNQFLANIKECEVILQVVRCFEDDNITHVNDKIDPLNDI 126
Query: 177 KILLREFERAGI-KVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAE 235
+ + E A I ++KR R++ +++ K D +++ K H E
Sbjct: 127 ETIELELILADIATLDKRIDRLQ-----------KALKSSK-DAKNLLECALSLKTHLEE 174
Query: 236 ITVRE--PVTLEDFADALDESLVW---KKAIIIANKGDAP-GSKDNYEKLVKAYG--ERF 287
+ + P+ + LD+ L + KK I +AN G+ + + K V+ + +
Sbjct: 175 LKPAKTFPLNTSEAFLELDKELRFLSHKKMIYVANVGEEDLNILNEHAKKVENHAKVQNS 234
Query: 288 KIIPVSAKKRINL-----DAVKEALYDVA-----------------EIIRVFTKSPGEEP 325
+ + + AK + D VKE L + +I FT E
Sbjct: 235 EFVALCAKLEEEMVSMSGDEVKEFLQSLGVEESGLEKTIRLSFKELGLINYFTAGVKEVR 294
Query: 326 AYPPIALKRGSTVLDVAERIHKDLVKNFRYARV--WGKSVKFPGQR----------VGPD 373
++ +K+GS+ A IHKD K F A + + + G+ G D
Sbjct: 295 SW---TIKKGSSAPVAAGVIHKDFEKGFIRAETISYDDFIAYKGEAGAKEKGALRIEGKD 351
Query: 374 HVLEDGDIV 382
++++DGD++
Sbjct: 352 YIVQDGDVL 360
>emb|CAC12034.1| (AL445065) GTP-binding protein Obg related protein [Thermoplasma
acidophilum]
Length = 382
Score = 76.5 bits (185), Expect = 5e-13
Identities = 43/121 (35%), Positives = 67/121 (54%), Gaps = 24/121 (19%)
Query: 81 AAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEP---------------IPAMMNY 125
+ +I LVG PNVGKS A T + E D+PFTT +P I A N
Sbjct: 2 SVKIGLVGEPNVGKSTFFSAATQNEAEIGDFPFTTVKPNLGMTFFTVKCPDTEIGARCNP 61
Query: 126 KD---------VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPIKQM 176
++ V +Q+++VPGLIEGA+ G+GMG + + IR+ DAI +++D+S + ++
Sbjct: 62 REGYCENGIRHVPVQVIDVPGLIEGASEGRGMGNEFMDAIRDVDAIVLIVDVSSGSVDEI 121
Query: 177 K 177
+
Sbjct: 122 R 122
>pir||E70477 GTP-binding protein obg - Aquifex aeolicus
>gi|2984292|gb|AAC07816.1| (AE000771) GTP-binding
protein [Aquifex aeolicus]
Length = 343
Score = 75.7 bits (183), Expect = 8e-13
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYK-DVQIQLVEVPGLIE 140
A + LVG PN GKS LL LT + ADYPFTT P +M + ++ + ++PGLIE
Sbjct: 161 ADVGLVGFPNAGKSTLLSRLTRAKPKIADYPFTTLSPNLGVMELDWERRLVIADIPGLIE 220
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSE----DPIKQMKILLREFERAGIKVNKRRPR 196
A G G+G + L I +A VID+S+ +P++ + + RE E K+ ++P+
Sbjct: 221 DAHKGAGLGHEFLRHIERTKFLAHVIDVSDFREREPVQAFEAINRELELYSPKL-AQKPQ 279
Query: 197 IEIRRTPSGGIVINGIENI--KGDINEVMKMLREEKIHSAEITVREPVTLEDFADALDES 254
I +V N I+ + + ++E+ K +E+ ++ +E+ + L
Sbjct: 280 I---------VVANKIDALSDRSLLSELEKYFKEKGYEFYAVSALTGEGIEELKEGL--- 327
Query: 255 LVWKKAIIIANKGDA 269
WKK I +K A
Sbjct: 328 --WKKYEEIRDKESA 340
>pir||B82532 GTP-binding protein XF2641 [imported] - Xylella fastidiosa (strain
9a5c) >gi|9107872|gb|AAF85438.1|AE004071_6 (AE004071)
GTP-binding protein [Xylella fastidiosa]
Length = 363
Score = 75.7 bits (183), Expect = 8e-13
Identities = 92/363 (25%), Positives = 150/363 (40%), Gaps = 78/363 (21%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQ---------------- 129
+VGLPNVGKS L ALT + +A++PF T EP ++ D +
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIAAANFPFCTIEPNVGVVPVPDPRLNQLAEIVKPQKLLPT 66
Query: 130 -IQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQMK 177
I+ V++ GL+ GAA G+G+G + LA IR DAIA V+ E DP+ ++
Sbjct: 67 VIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGQIIHVAGKVDPLADIE 126
Query: 178 ILLREFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEK-IHSAEI 236
I+ E A + ++ +R G +++ + + L E K SA +
Sbjct: 127 IIDTELILADLDTVEKACNRMMRAAKGGDKEAIACKSV---LERLQVALNEGKSARSAGL 183
Query: 237 TVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDN--YEKL-VKAYGERFKIIPVS 293
E + D L K + IAN + G +DN E L V+A + +++P+S
Sbjct: 184 DEDERALVRDLF-----LLTLKPVMYIANVLE-NGFQDNVYLEALRVRAASDNAQLVPIS 237
Query: 294 A----------------------KKRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPPIA 331
A + L+ V A Y + + FT E A+
Sbjct: 238 AVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEVRAW---T 294
Query: 332 LKRGSTVLDVAERIHKDLVKNFRYAR--VWGKSVKFPGQR----------VGPDHVLEDG 379
+K G+T A IH D K F A + +K+ G+ G ++ +++G
Sbjct: 295 VKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAGRMRLEGKEYRVQEG 354
Query: 380 DIV 382
D++
Sbjct: 355 DVL 357
>pir||H81425 probable GTP-binding protein Cj0096 [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967590|emb|CAB72580.1|
(AL139074) putative GTP-binding protein [Campylobacter
jejuni]
Length = 350
Score = 74.9 bits (181), Expect = 1e-12
Identities = 52/164 (31%), Positives = 88/164 (52%), Gaps = 3/164 (1%)
Query: 68 KGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKD 127
KG + ++ + A + LVG PNVGKS L+ ++ E A+Y FTT P +++ +
Sbjct: 145 KGESRLVRLELKLIADVGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVNE 204
Query: 128 V-QIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVID-LSEDPIKQMKILLR-EFE 184
+ ++PG+IEGA+ GKG+G L I + V+D + + P+K+ I+LR E E
Sbjct: 205 YNSFVMADIPGIIEGASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELE 264
Query: 185 RAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLRE 228
+ ++ R+ I I ++ S + E I +INE+ L+E
Sbjct: 265 KFSNELFGRKFGIMISKSDSVRLGEEFAEQIALNINELDNYLKE 308
>sp|P37518|YYAF_BACSU HYPOTHETICAL 40.1 KD GTP-BINDING PROTEIN IN RPSF-SPO0J INTERGENIC
REGION >gi|2127015|pir||S66016 probable GTP-binding
protein yyaF - Bacillus subtilis
>gi|467376|dbj|BAA05222.1| (D26185) unknown [Bacillus
subtilis] >gi|2636639|emb|CAB16129.1| (Z99124) similar
to hypothetical proteins [Bacillus subtilis]
Length = 366
Score = 74.9 bits (181), Expect = 1e-12
Identities = 87/365 (23%), Positives = 143/365 (38%), Gaps = 79/365 (21%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQ-------------- 131
+VGLPNVGKS L A+T ESA+YPF T +P ++ D ++Q
Sbjct: 7 IVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDDRLQKLTELVNPKKTVPT 66
Query: 132 ---LVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDL-----------SEDPIKQMK 177
++ G+++GA+ G+G+G + L+ IR DAI V+ DPI ++
Sbjct: 67 AFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKVDPIDDIE 126
Query: 178 ILLREFERAGIK-VNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEI 236
+ E A ++ V KR R+ + E I + E + E+ S E
Sbjct: 127 TINLELILADMETVEKRITRVSKLAKQKDKDAVFEFE-ILSKLKEAFE--SEKPARSVEF 183
Query: 237 TVREPVTLEDFADALDESLVWKKAIIIANKGD----APGSKDNYEKLVK-AYGERFKIIP 291
T + ++ L K + +AN + P +N K+ + A GE ++I
Sbjct: 184 TEEQQKLVKQL-----HLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAEVIV 238
Query: 292 VSAK----------------------KRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPP 329
V AK + LD + +A Y + + FT E A+
Sbjct: 239 VCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRAW-- 296
Query: 330 IALKRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPG------------QRVGPDHVLE 377
K+G + A IH D + F A G + G ++V++
Sbjct: 297 -TFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVVQ 355
Query: 378 DGDIV 382
DGD++
Sbjct: 356 DGDVI 360
>sp|P44681|YCHF_HAEIN PROBABLE GTP-BINDING PROTEIN HI0393 >gi|1074386|pir||I64150
probable GTP-binding protein HI0393 - Haemophilus
influenzae (strain Rd KW20) >gi|1573365|gb|AAC22052.1|
(U32723) conserved hypothetical GTP-binding protein
[Haemophilus influenzae Rd]
Length = 363
Score = 74.5 bits (180), Expect = 2e-12
Identities = 89/365 (24%), Positives = 146/365 (39%), Gaps = 82/365 (22%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQI--------------- 130
+VGLPNVGKS L ALT +E+A+YPF T EP ++ D ++
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66
Query: 131 --QLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQMK 177
+ V++ GL+ GA+ G+G+G + LA IR DAI V+ E DP+ +
Sbjct: 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDID 126
Query: 178 ILLREFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKML----REEKIHS 233
+ E A + +R + +R G + K +++ + K+L I S
Sbjct: 127 TINTELALADLDSCERAIQRLQKRAKGGD------KEAKFELSVMEKILPVLENAGMIRS 180
Query: 234 AEITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVK--AYGERFKIIP 291
+ E ++ + L K + IAN + + Y V+ A E ++P
Sbjct: 181 VGLDKEELQAIKSY-----NFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVP 235
Query: 292 VSAK----------------------KRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPP 329
V A + L+ V A Y + + FT E A+
Sbjct: 236 VCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAW-- 293
Query: 330 IALKRGSTVLDVAERIHKDLVKNFRYARV--WGKSVKFPGQR----------VGPDHVLE 377
+ G+T A IH D K F A V + ++F G+ G D++++
Sbjct: 294 -TVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQ 352
Query: 378 DGDIV 382
DGD++
Sbjct: 353 DGDVM 357
>pir||C70129 probable GTP-binding protein BB0235 - Lyme disease spirochete
>gi|2688121|gb|AAC66614.1| (AE001133) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 368
Score = 73.7 bits (178), Expect = 3e-12
Identities = 84/363 (23%), Positives = 147/363 (40%), Gaps = 73/363 (20%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQI--------------- 130
+VGLPNVGKS L +LT +VE A+YPF T EP ++ D ++
Sbjct: 7 IVGLPNVGKSTLFSSLTSSNVEIANYPFCTIEPNIGIVEIPDERLLKISECIIPRKIIPA 66
Query: 131 --QLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSED-----------PIKQMK 177
+ V++ GL++GA+ G+G+G + LA IR I V+ E+ P K +
Sbjct: 67 VMEFVDIAGLVKGASTGEGLGNKFLANIREVSLIVHVVRCFEEKEVIHINDDINPEKDIT 126
Query: 178 ILLREFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAEIT 237
+ E + ++ ++ + + + S + I ++ ML+ + H + +
Sbjct: 127 TINVELCLSDLETVQKSLQKQEKNAKSTD------KKISESSKAIVLMLKRLEDHLSNMN 180
Query: 238 VREPVTLEDFADALDES---LVWKKAIIIANKGDAPGSKDNYEKLVK--AYGERFKIIPV 292
+DF S L +KK + + N + S + Y +VK A E + +
Sbjct: 181 PAVEFKFDDFEYNFIRSLNLLTFKKVLYVCNVDENSLSGNKYTDIVKNIALKEGNDFLIL 240
Query: 293 SAKKRINLDAVKEALYDVAEIIRVFTKSPGE-----EPAYPPIAL--------------- 332
AK L +K+ Y E++++F + + AY + L
Sbjct: 241 CAKIEAELAQIKDISYK-NEMLKLFGINDSGLGNLIKKAYYTLGLRTYFTAGLQEVRAWT 299
Query: 333 -KRGSTVLDVAERIHKDLVKNFRYARVWGKSVKFPGQRV------------GPDHVLEDG 379
K+G A IH D + F A V+ F Q V G ++++ DG
Sbjct: 300 FKQGMRAPKAAGIIHSDFERGFIKAEVYSCEDLFKFQSVQKLKEKGLVRIEGKEYIVRDG 359
Query: 380 DIV 382
D++
Sbjct: 360 DVI 362
>pir||S48582 hypothetical protein - Mycoplasma capricolum (SGC3) (fragment)
>gi|7451193|pir||S77880 probable GTP-binding protein
MC010 - Mycoplasma capricolum (fragment)
>gi|950066|emb|CAA83699.1| (Z33013) similar to GTP-bind.
GTP1/OBG family [Mycoplasma capricolum]
Length = 178
Score = 73.4 bits (177), Expect = 4e-12
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 83 QIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQ------------- 129
Q+ +VGLPNVGKS L A+T VE+A+YPF T EP ++ D +
Sbjct: 4 QVGIVGLPNVGKSTLFNAITNSKVEAANYPFATIEPNVGIVEVPDYRLDELYKIFNSKKR 63
Query: 130 ----IQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSED 171
I+ V++ GLI GA+ G+G+G LA IR DAI V+ +D
Sbjct: 64 VATTIEFVDIAGLIAGASQGEGLGNAFLANIRQTDAICQVVRCFDD 109
>pir||T42036 obg protein - Streptomyces coelicolor >gi|1783290|dbj|BAA13498.1|
(D87915) Obg [Streptomyces coelicolor A3(2)]
>gi|6983737|emb|CAB75376.1| (AL139298) GTP-binding
protein [Streptomyces coelicolor A3(2)]
Length = 478
Score = 72.6 bits (175), Expect = 7e-12
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEG 141
A + LVG P+ GKS L+ L+ + ADYPFTT P ++ + + +VPGLI G
Sbjct: 160 ADVALVGYPSAGKSSLISVLSAAKPKIADYPFTTLVPNLGVVTAGETVYTVADVPGLIPG 219
Query: 142 AALGKGMGPQLLAVIRNADAIAIVIDLS-----EDPIKQMKILLREFERAGIKVNKRRPR 196
A+ GKG+G + L + + V+D + DP+ + ++ E G N RPR
Sbjct: 220 ASQGKGLGLEFLRHVERCSVLVHVLDTATLESERDPLSDLDVIETELREYGGLDN--RPR 277
Query: 197 IEIRRTPSGGIVINGIENIKG-DINEVMKMLREEKIHSA-EITVREPVTLEDFADALDES 254
I +V+N I+ G D+ E+++ E + + E++ + L + + AL E
Sbjct: 278 I---------VVLNKIDVPDGKDLAEMVRPDLEARGYRVFEVSAVAHMGLRELSFALAEL 328
Query: 255 LVWKKA 260
+ +A
Sbjct: 329 VATARA 334
>pir||S74797 GTP-binding protein obg - Synechocystis sp. (strain PCC 6803)
>gi|1652022|dbj|BAA16948.1| (D90901) GTP-binding protein
[Synechocystis sp.]
Length = 368
Score = 72.2 bits (174), Expect = 9e-12
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 12/140 (8%)
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEP-IPAMMNYKDVQIQLVEVPGLIE 140
A++ ++GLPN GKS L+ AL+ + ADYPFTT P + + ++PGLIE
Sbjct: 160 AEVGIIGLPNAGKSTLIAALSAARPKIADYPFTTLVPNLGVVRKPTGDGTVFADIPGLIE 219
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSE-DPIKQMKILLREFERAGIKVNKRRPRIEI 199
GAA G G+G + L I + V+D++ DPI +++ +E + G + + +P+I
Sbjct: 220 GAAAGIGLGHEFLRHIERTRLLLHVLDVTAGDPIANFRVIQQELDAYGRGITE-KPQI-- 276
Query: 200 RRTPSGGIVINGIENIKGDI 219
I +N I+ + G++
Sbjct: 277 -------IALNKIDALDGEM 289
>pir||T23645 hypothetical protein M01E5.2 - Caenorhabditis elegans
>gi|3878629|emb|CAB07637.1| (Z93385) predicted using
Genefinder~Similarity to B.subtilis GTP-binding protein
(SW:P20964), contains similarity to Pfam domain: PF01018
(GTP1/OBG family), Score=169.5, E-value=1e-49, N=1~cDNA
EST yk457c2.5 comes from this gene [Caenorhabditis
elegans]
Length = 358
Score = 72.2 bits (174), Expect = 9e-12
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDV-QIQLVEVPGLIEGAAL 144
LVG PN GKS LLRA++ + A YPFTT P ++ Y+D QI + ++PGLIE + L
Sbjct: 193 LVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFYEDFEQIAVADIPGLIEDSHL 252
Query: 145 GKGMGPQLLAVIRNADAIAIVIDLS----EDPIKQMKILLREFER 185
KG+G L I +++ V+D S D K +++ L +++
Sbjct: 253 NKGLGISFLKHIERCESLWYVLDYSTGSLTDQYKMLRVELEGYQK 297
>pir||A81367 probable GTP-binding protein Cj0930 [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968367|emb|CAB73187.1|
(AL139076) putative GTP-binding protein [Campylobacter
jejuni]
Length = 367
Score = 72.2 bits (174), Expect = 9e-12
Identities = 85/364 (23%), Positives = 151/364 (41%), Gaps = 76/364 (20%)
Query: 86 LVGLPNVGKSELLRALTGV-DVESADYPFTTTEPIPAMMNYKDVQ--------------- 129
+VGLPNVGKS ALT + +SA+YPF T EP AM+ D++
Sbjct: 7 IVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAMVEVPDLRLNELAKIVKPERIMH 66
Query: 130 --IQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-----------DPIKQM 176
I+ V++ GL++GA+ G+G+G + L+ IR + I ++ + DP++ +
Sbjct: 67 SLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVILHIVRCFDEENITHVEGGVDPLRDV 126
Query: 177 KILLREFERAGI-KVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEKIHSAE 235
+I+ E A I +++K+ ++ + +E ++ + K L E
Sbjct: 127 EIINTELILADIEQLSKKIEKLTKEAKANQKGAKESLELANSLLDHLNKGLAASSYPEKE 186
Query: 236 ITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDN-YEKLVKAYGER--FKIIPV 292
+ + + E L K+ I AN + S+DN Y K +K Y ++ ++I +
Sbjct: 187 SEIYQALIKE------LRLLSAKEVIYGANVDENGISEDNDYVKALKEYAKKNDHEVIKL 240
Query: 293 SAK----------------------KRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPPI 330
AK LD + + +I FT E ++
Sbjct: 241 CAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRTAFAKLGLISYFTAGVVEVRSW--- 297
Query: 331 ALKRGSTVLDVAERIHKDLVKNFRYARV--WGKSVKFPGQR----------VGPDHVLED 378
+K+G A IH D K F A V + +++ G+ G D+++ D
Sbjct: 298 TIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQYKGENGAKEAGKLRLEGKDYIVLD 357
Query: 379 GDIV 382
GD++
Sbjct: 358 GDVM 361
>gb|AAF75096.1|AC007583_32 (AC007583) It is a member of GTP1/OBG family PF|01018. [Arabidopsis
thaliana]
Length = 1029
Score = 72.2 bits (174), Expect = 9e-12
Identities = 41/119 (34%), Positives = 62/119 (51%), Gaps = 8/119 (6%)
Query: 74 LAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLV 133
L ++ + A + LVG+PN GKS LL AL+ Y FTT P +NY D + +
Sbjct: 832 LILELKSIADVGLVGMPNAGKSTLLGALSRAKPRVGHYAFTTLRPNLGNVNYDDFSMTVA 891
Query: 134 EVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE--------DPIKQMKILLREFE 184
++PGLI+GA +G+G L I +A V+DL+ P +Q++ L+ E E
Sbjct: 892 DIPGLIKGAHQNRGLGHNFLRHIERTKVLAYVVDLASGLDGCEGLTPWQQLRDLVMELE 950
>gb|AAF79543.1|AC022464_1 (AC022464) F22G5.1 [Arabidopsis thaliana]
Length = 445
Score = 72.2 bits (174), Expect = 9e-12
Identities = 41/119 (34%), Positives = 62/119 (51%), Gaps = 8/119 (6%)
Query: 74 LAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLV 133
L ++ + A + LVG+PN GKS LL AL+ Y FTT P +NY D + +
Sbjct: 248 LILELKSIADVGLVGMPNAGKSTLLGALSRAKPRVGHYAFTTLRPNLGNVNYDDFSMTVA 307
Query: 134 EVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE--------DPIKQMKILLREFE 184
++PGLI+GA +G+G L I +A V+DL+ P +Q++ L+ E E
Sbjct: 308 DIPGLIKGAHQNRGLGHNFLRHIERTKVLAYVVDLASGLDGCEGLTPWQQLRDLVMELE 366
>dbj|BAA13501.1| (D87916) Obg [Streptomyces griseus]
Length = 478
Score = 71.8 bits (173), Expect = 1e-11
Identities = 42/134 (31%), Positives = 66/134 (48%), Gaps = 7/134 (5%)
Query: 69 GGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDV 128
G + ++ + A + LVG P+ GKS L+ L+ + ADYPFTT P ++
Sbjct: 147 GESRDIVLELKTVADVALVGYPSAGKSSLISVLSAAKPKIADYPFTTLVPNLGVVTAGST 206
Query: 129 QIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS-----EDPIKQMKILLREF 183
+ +VPGLI GA+ GKG+G + L + + V+D + DP+ + ++ E
Sbjct: 207 VYTIADVPGLIPGASQGKGLGLEFLRHVERCSVLVHVLDTATLESDRDPVSDLDMIEEEL 266
Query: 184 ERAGIKVNKRRPRI 197
G N RPRI
Sbjct: 267 RLYGGLEN--RPRI 278
>pir||D81037 GTP-binding protein, probable NMB1838 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7227093|gb|AAF42173.1| (AE002533) GTP-binding
protein, putative [Neisseria meningitidis MC58]
>gi|7379353|emb|CAB83908.1| (AL162753) hypothetical
protein NMA0618 [Neisseria meningitidis Z2491]
Length = 363
Score = 71.8 bits (173), Expect = 1e-11
Identities = 40/103 (38%), Positives = 57/103 (54%), Gaps = 17/103 (16%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQ---------------- 129
+VGLPNVGKS L ALT +E+A+YPF T EP ++ D +
Sbjct: 7 IVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNPQKMQPA 66
Query: 130 -IQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSED 171
++ V++ GL+ GA+ G+G+G Q LA IR DAI V+ +D
Sbjct: 67 IVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDD 109
>pir||F71665 hypothetical protein RP604 - Rickettsia prowazekii
>gi|3861148|emb|CAA15048.1| (AJ235272) unknown
[Rickettsia prowazekii]
Length = 365
Score = 71.4 bits (172), Expect = 2e-11
Identities = 85/359 (23%), Positives = 150/359 (41%), Gaps = 68/359 (18%)
Query: 86 LVGLPNVGKSELLRALTGVDV-ESADYPFTTTEPIPAMMNYKDVQIQ------------- 131
+VGLPNVGKS L ALT + ++A+YPF T EP + + D ++Q
Sbjct: 7 IVGLPNVGKSTLFNALTASQIADAANYPFCTIEPNSSKVLVPDERLQRLVSLVGSNKMIP 66
Query: 132 ----LVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSED-----------PIKQM 176
V++ GL++GA+ G G+G + L+ IR DAI V+ ED P+ +
Sbjct: 67 SYIEFVDIAGLVKGASKGDGLGNKFLSHIREVDAILHVLRCFEDEDIMHVHNKIDPLYDI 126
Query: 177 KILLREFERAGIKVNKRRPRIEIRRTPSGGIVINGIENIKGDINEVMKMLREEK------ 230
+++ E I ++ +R SG + +E I + E+ K+L E K
Sbjct: 127 EVIETELILTDIASLEKHFIKSEKRLKSGDKKM--VEQI-ALLKEIYKVLAEGKPARILN 183
Query: 231 -------IHSAEITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSK--------DN 275
+ ++ +P+ D ++ K ++A + + +K ++
Sbjct: 184 EVLGADNLKQLQLITSKPILYVCNVFEQDAAIGNKFTQLVAKRAETEKTKSLVISSKIES 243
Query: 276 YEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRG 335
L+++ E+ + + + L V + Y++ + FT P E ++ K G
Sbjct: 244 EIALLESVEEKEEFLKYIGLNKTGLSKVIKEGYNLLNLKSFFTIGPKEAHSW---TFKDG 300
Query: 336 STVLDVAERIHKDLVKNFRYARVWG-----------KSVKFPGQRV-GPDHVLEDGDIV 382
+ A IH D K F A V K+ + R+ G D+ ++DGDIV
Sbjct: 301 TLAPAAAGIIHTDFEKGFIRAEVISYEDYINLGSEAKAKEVGKMRLEGKDYKMQDGDIV 359
>dbj|BAA91783.1| (AK001603) unnamed protein product [Homo sapiens]
Length = 401
Score = 71.0 bits (171), Expect = 2e-11
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 74 LAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYK-DVQIQL 132
L ++ + A +VG PN GKS LLRA++ A YPFTT +P +++Y+ +QI +
Sbjct: 217 LHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAV 276
Query: 133 VEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSE-DPIKQMKILLREFE 184
++PG+I GA +G+G L I + V+DLS+ +P Q+ L E E
Sbjct: 277 ADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELE 329
>dbj|BAB13092.1| (AP001119) hypothetical 43.3 kD GTP-binding protein in dacB-rpmA
intergenic region (F390) [Buchnera sp. APS]
Length = 334
Score = 71.0 bits (171), Expect = 2e-11
Identities = 39/119 (32%), Positives = 68/119 (56%), Gaps = 6/119 (5%)
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMN-YKDVQIQLVEVPGLIE 140
A + +G+PNVGKS L+ ++G + +DYPFTT P+ +N K+ + + ++PG+I+
Sbjct: 160 ADVGTLGMPNVGKSTLVTNISGAKTKISDYPFTTLHPVLGSVNIQKNKKFIIADIPGIIK 219
Query: 141 GAALGKGMGPQLLAVIRNADAIAIVIDLSED----PIKQMKILLREFERAGIKV-NKRR 194
GA+ G G+G + L + + +IDL P +K +L E ++ +K+ NK R
Sbjct: 220 GASYGAGLGIRFLKHLERCKLLLHIIDLVPQNNCHPSDNIKTVLNELKKYSLKLYNKPR 278
>sp|P42641|YHBZ_ECOLI HYPOTHETICAL 43.3 KD GTP-BINDING PROTEIN IN DACB-RPMA INTERGENIC
REGION >gi|7428736|pir||A65109 GTP-binding protein obg -
Escherichia coli (strain K-12) >gi|606121|gb|AAA57984.1|
(U18997) ORF_f390 [Escherichia coli]
>gi|1789574|gb|AAC76215.1| (AE000399) putative
GTP-binding factor [Escherichia coli K12]
Length = 390
Score = 70.6 bits (170), Expect = 3e-11
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 9/111 (8%)
Query: 82 AQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEP---IPAMMNYKDVQIQLVEVPGL 138
A + ++G+PN GKS +RA++ + ADYPFTT P + M N K + ++PGL
Sbjct: 160 ADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVV--ADIPGL 217
Query: 139 IEGAALGKGMGPQLLAVIRNADAIAIVIDL----SEDPIKQMKILLREFER 185
IEGAA G G+G + L + + +ID+ DP++ +I++ E E+
Sbjct: 218 IEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEK 268
>pir||H83074 GTP-binding protein Obg PA4566 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950812|gb|AAG07954.1|AE004870_5
(AE004870) GTP-binding protein Obg [Pseudomonas
aeruginosa]
Length = 406
Score = 70.6 bits (170), Expect = 3e-11
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 67 RKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEP---IPAMM 123
+ G L ++ + A + L+GLPN GKS +RA++ + ADYPFTT P + ++
Sbjct: 145 KPGEARDLKLELKVLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVSVG 204
Query: 124 NYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS----EDPIKQMKIL 179
YK + ++PGLIEGAA G G+G + L + + ++D++ DP +++
Sbjct: 205 RYKSFVV--ADIPGLIEGAAEGAGLGIRFLKHLARTRILLHLVDMAPLDESDPADAAEVI 262
Query: 180 LREFERAGIKVNKR 193
+RE R + +R
Sbjct: 263 VRELGRFSPALTER 276
>pir||T30310 probable GTP binding protein - Lactococcus lactis (fragment)
>gi|2909718|gb|AAC12968.1| (U76424) putative GTP binding
protein [Lactococcus lactis]
Length = 214
Score = 70.2 bits (169), Expect = 4e-11
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 34/151 (22%)
Query: 86 LVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQI--------------- 130
+VGLPNVGKS L A+T E+A+YPF T +P M+ D ++
Sbjct: 7 IVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDERLNKLTELIKPKKTVPT 66
Query: 131 --QLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVI---------------DLSEDPI 173
+ ++ G+++GA+ G+G+G + LA IR DAI V+ D DP+
Sbjct: 67 TFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIIHVVRAFDDENVMRENNREDAFIDPM 126
Query: 174 KQMKILLREFERAGIK-VNKRRPRIE-IRRT 202
++ + E A ++ VNKR R+E I RT
Sbjct: 127 ADIETINLELILADLESVNKRYARVEKIART 157
>pir||S75088 probable GTP-binding protein sll0245 - Synechocystis sp. (strain
PCC 6803) >gi|1653033|dbj|BAA17950.1| (D90910)
hypothetical protein [Synechocystis sp.]
Length = 363
Score = 69.9 bits (168), Expect = 5e-11
Identities = 90/359 (25%), Positives = 149/359 (41%), Gaps = 69/359 (19%)
Query: 86 LVGLPNVGKSELLRALTG-VDVESADYPFTTTEPIPAMMNYKD----------------- 127
+VGLPNVGKS L AL E+A++PF T EP +++ D
Sbjct: 6 IVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDDRLGKLAEISQSVKVVP 65
Query: 128 VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDL-----------SEDPIKQM 176
+++ V++ GL+ GA+ G+G+G Q LA IR DAI V+ S DP++ +
Sbjct: 66 TRMEFVDIAGLVAGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDPVRDV 125
Query: 177 KILLREFERAGI-KVNKR--RPRIEIRRTPSGGIVINGIENIKGDINEVMKMLR------ 227
+++ E A + +V KR R R + R + +E + +NE + R
Sbjct: 126 EVIDLELVLADLAQVEKRLERSRKQARGNKDLLEEVAILERLVAALNEGIPARRVGLTAE 185
Query: 228 -EEKIHSAEITVREP------VTLEDFADALDESLVWKKAI-IIANKGDAP----GSKDN 275
+E I S + +P VT +D A D W + + IA K +A ++
Sbjct: 186 EQELIKSLGLLTLKPIIYATNVTEDDLAGGND----WVEQVKAIAAKDEAKVVVISAQVE 241
Query: 276 YEKLVKAYGERFKIIPVSAKKRINLDAVKEALYDVAEIIRVFTKSPGEEPAYPPIALKRG 335
E + ER + L ++ A Y++ + T P E A+ I+ G
Sbjct: 242 SELVELPEEERQDFLASLGVTEGGLKSLIRATYELLGLRTYLTTGPQETRAWTIIS---G 298
Query: 336 STVLDVAERIHKDLVKNFRYAR------------VWGKSVKFPGQRVGPDHVLEDGDIV 382
A IH D + F A + G K + G ++V+++GD++
Sbjct: 299 MKAPQAAGVIHTDFERGFIRAETVAYEDLISCGSMQGAKEKGLVRSEGKEYVVQEGDVL 357
>sp|P75215|Y384_MYCPN PROBABLE GTP-BINDING PROTEIN MG384 HOMOLOG >gi|2146144|pir||S73605
GTP-binding protein obg - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1673950|gb|AAB95927.1| (AE000027) small
GTPase OBG involved in cell growth [Mycoplasma
pneumoniae]
Length = 433
Score = 69.9 bits (168), Expect = 5e-11
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 68 KGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKD 127
KG ++++ + A + +VG PN GKS L+ L+ + A+Y FTT P+ ++ + D
Sbjct: 146 KGQSLHVSLEIKYLANVGIVGFPNTGKSTLISKLSNAKPKIANYRFTTLVPVLGVVKHND 205
Query: 128 VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS----EDPIKQMKILLREF 183
+ ++PGLIE A+ G G+G L I + + +I L +DP + + ++RE
Sbjct: 206 QSLVFADIPGLIENASEGSGLGHYFLRHIERCEILIHLISLDPVDHDDPCQAYEQIMREL 265
Query: 184 ERAGIKVNKRRPRIEIRRT 202
+ + K++ + +T
Sbjct: 266 SKYSQLLVKKKMLVVANKT 284
>pir||F70680 probable obg - Mycobacterium tuberculosis (strain H37RV)
>gi|1666144|emb|CAB03779.1| (Z81451) obg [Mycobacterium
tuberculosis]
Length = 479
Score = 69.1 bits (166), Expect = 8e-11
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 68 KGGGYSLAVKKEGAAQIVLVGLPNVGKSELLRALTGVDVESADYPFTTTEPIPAMMNYKD 127
KG L ++ + A + LVG P+ GKS L+ A++ + ADYPFTT P +++ +
Sbjct: 146 KGQSRDLTLELKTVADVGLVGFPSAGKSSLVSAISAAKPKIADYPFTTLVPNLGVVSAGE 205
Query: 128 VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLS-----EDPIKQMKILLRE 182
+ +VPGLI GA+ G+G+G L I + V+D + DPI + L E
Sbjct: 206 HAFTVADVPGLIPGASRGRGLGLDFLRHIERCAVLVHVVDCATAEPGRDPISDIDALETE 265
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139656698
Number of Sequences: 2977
Number of extensions: 5816384
Number of successful extensions: 22383
Number of sequences better than 1.0e-10: 85
Number of HSP's better than 0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 22113
Number of HSP's gapped (non-prelim): 102
length of query: 387
length of database: 189,106,746
effective HSP length: 59
effective length of query: 328
effective length of database: 153,796,013
effective search space: 50445092264
effective search space used: 50445092264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)