BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2029 (PAB2029) DE:Hypothetical protein
(323 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75166 hypothetical protein PAB2029 - Pyrococcus abyssi (st... 661 0.0
pir||H71048 hypothetical protein PH1680 - Pyrococcus horikoshii ... 643 0.0
gi|11499188 conserved hypothetical protein [Archaeoglobus fulgid... 277 2e-73
emb|CAC12246.1| (AL445066) conserved hypothetical protein [Therm... 266 2e-70
pir||B69025 conserved hypothetical protein MTH1186 - Methanobact... 249 3e-65
pir||A69100 conserved hypothetical protein MTH1742 - Methanobact... 242 3e-63
pir||D75016 hypothetical protein PAB1092 - Pyrococcus abyssi (st... 225 6e-58
pir||F71455 hypothetical protein PH0300 - Pyrococcus horikoshii ... 223 2e-57
sp|Q58558|YB57_METJA HYPOTHETICAL PROTEIN MJ1157 >gi|2128701|pir... 222 3e-57
gb|AAG18803.1| (AE004984) Vng0190c [Halobacterium sp. NRC-1] 213 2e-54
gb|AAK40900.1| Conserved hypothetical protein [Sulfolobus solfat... 199 5e-50
emb|CAB57713.1| (Y18930) hypothetical protein [Sulfolobus solfat... 199 5e-50
pir||E72407 conserved hypothetical protein - Thermotoga maritima... 197 2e-49
pir||E70415 conserved hypothetical protein aq_1333 - Aquifex aeo... 189 3e-47
pir||T02383 hypothetical protein F4I1.8 - Arabidopsis thaliana >... 187 2e-46
gb|AAF58991.1| (AE003834) CG8078 gene product [Drosophila melano... 186 3e-46
pir||T33145 hypothetical protein F29C4.6 - Caenorhabditis elegan... 185 5e-46
sp|Q58873|YE78_METJA HYPOTHETICAL PROTEIN MJ1478 >gi|2128886|pir... 183 2e-45
pir||A72514 hypothetical protein APE2086 - Aeropyrum pernix (str... 183 2e-45
pir||T40160 conserved hypothetical protein SPBC2G5.03 - fission ... 181 9e-45
pir||H72637 hypothetical protein APE0537 - Aeropyrum pernix (str... 181 9e-45
sp|P53088|YGW1_YEAST HYPOTHETICAL 35.5 KD PROTEIN IN VAM7-YPT32 ... 179 3e-44
sp|Q94480|V136_DICDI VEG136 PROTEIN >gi|1513300|gb|AAB06790.1| (... 179 4e-44
gi|11498919 conserved hypothetical protein [Archaeoglobus fulgid... 166 3e-40
gb|AAF17646.1|AC009978_22 (AC009978) T23E18.11 [Arabidopsis thal... 138 1e-31
gi|6321227 Ygl211wp [Saccharomyces cerevisiae] >gi|1322852|emb|C... 108 1e-22
pir||C75514 conserved hypothetical protein - Deinococcus radiodu... 105 8e-22
sp|Q57909|Y485_METJA HYPOTHETICAL PROTEIN MJ0485 >gi|2128338|pir... 99 8e-20
pir||D82199 conserved hypothetical protein VC1432 [imported] - V... 91 1e-17
pir||E81837 hypothetical protein NMA1465 [imported] - Neisseria ... 87 2e-16
pir||C83497 conserved hypothetical protein PA1192 [imported] - P... 87 2e-16
sp|Q57184|YDAO_HAEIN HYPOTHETICAL PROTEIN HI1371.1 >gi|1574205|g... 85 1e-15
pir||F81129 conserved hypothetical protein NMB1023 [imported] - ... 84 2e-15
sp|P76055|YDAO_ECOLI HYPOTHETICAL 35.6 KD PROTEIN IN DBPA-INTR I... 83 4e-15
pir||G82791 conserved hypothetical protein XF0569 [imported] - X... 80 3e-14
pir||F64667 conserved hypothetical protein HP1182 - Helicobacter... 79 8e-14
pir||G71848 hypothetical protein jhp1108 - Helicobacter pylori (... 77 3e-13
gb|AAF36034.1| (AC024202) contains similarity to Escherichia eco... 71 1e-11
pir||F81428 hypothetical protein Cj0118 [imported] - Campylobact... 71 2e-11
>pir||H75166 hypothetical protein PAB2029 - Pyrococcus abyssi (strain Orsay)
>gi|5457925|emb|CAB49415.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 323
Score = 661 bits (1687), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS
Sbjct: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
Query: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF
Sbjct: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
Query: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM
Sbjct: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
Query: 181 RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR 240
RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR
Sbjct: 181 RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR 240
Query: 241 AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC
Sbjct: 241 AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
Query: 301 QFRLQVKERAEKLKFTLSRSSQV 323
QFRLQVKERAEKLKFTLSRSSQV
Sbjct: 301 QFRLQVKERAEKLKFTLSRSSQV 323
>pir||H71048 hypothetical protein PH1680 - Pyrococcus horikoshii
>gi|3258109|dbj|BAA30792.1| (AP000006) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 643 bits (1641), Expect = 0.0
Identities = 310/319 (97%), Positives = 319/319 (99%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS
Sbjct: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
Query: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
VVLLHLLAKLRK+FPFEIVAITIDEGIKGYRDKS++VAK+NAELLGVEHHIYRFKDYIGF
Sbjct: 61 VVLLHLLAKLRKKFPFEIVAITIDEGIKGYRDKSIKVAKKNAELLGVEHHIYRFKDYIGF 120
Query: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQ+FLMNLM
Sbjct: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQMFLMNLM 180
Query: 181 RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR 240
RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR
Sbjct: 181 RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR 240
Query: 241 AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
AEIRDWLNEMEE+HPGTKYQLLRSYDKIFPLLAKTYAK+VKLNRCKICGQPTSGEICKAC
Sbjct: 241 AEIRDWLNEMEEKHPGTKYQLLRSYDKIFPLLAKTYAKKVKLNRCKICGQPTSGEICKAC 300
Query: 301 QFRLQVKERAEKLKFTLSR 319
QFRLQVKERAEKLKF+LS+
Sbjct: 301 QFRLQVKERAEKLKFSLSQ 319
>gi|11499188 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429997|pir||B69449 conserved hypothetical protein
AF1595 - Archaeoglobus fulgidus
>gi|2648962|gb|AAB89651.1| (AE000992) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 304
Score = 277 bits (700), Expect = 2e-73
Identities = 139/300 (46%), Positives = 199/300 (66%), Gaps = 9/300 (3%)
Query: 3 CSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVV 62
CSKC R AV F ++ ++ C +HF E E +VK ++KY MI+KG+RI +A+SGGKDSV
Sbjct: 4 CSKCSRRAVIFQRHANRHLCKRHFIEDFERRVKLAVKKYDMIQKGDRIAIALSGGKDSVT 63
Query: 63 LLHLLAKLRK-RFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFT 121
L +L KL R E AITIDEGI GYR +VE+A++ E LG+EH + F++ G T
Sbjct: 64 LAFVLNKLYGFRSDLEFFAITIDEGIAGYRPPTVEIARKVTEQLGMEHLVVSFEENFGMT 123
Query: 122 LDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMR 181
LDE V+ RG++ C+YCGV+R++LLN+ A E+ KLA G NLDDE Q L+N +
Sbjct: 124 LDEMVK----RGDKK-PCTYCGVFRKYLLNRTAREMGATKLATGHNLDDETQTILLNFLN 178
Query: 182 GDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRA 241
D+ R+ R P + + EGLV RIKP R V EKE+V+Y L+ + +D ECPY+ RA
Sbjct: 179 ADMERMARLVP--QRVQEGLVVRIKPFRYVYEKEVVVYGFLHELPMDFDECPYSHFPVRA 236
Query: 242 EIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKACQ 301
+RD+L + E ++PG K+ ++ S++K+ P L + Y ++ LNRC+ CG+PT IC+AC+
Sbjct: 237 AVRDFLYDFENKYPGRKFSVMSSFEKLIPCLKEIY-PQIDLNRCERCGEPTPRRICQACK 295
>emb|CAC12246.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 314
Score = 266 bits (673), Expect = 2e-70
Identities = 148/302 (49%), Positives = 189/302 (62%), Gaps = 10/302 (3%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGE-RIGVAVSGGKD 59
MKCSKC EA+YFAKY G Y C +HFN+M+E +VK IR +KK RI VA+SGGKD
Sbjct: 1 MKCSKCQAEAIYFAKYNGLYLCREHFNDMIEKRVKSEIRNQVDLKKPMVRISVAISGGKD 60
Query: 60 SVVLLHLLAK-LRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYI 118
S V L+LL K L KR E+ A T+DEGI GYR +E A + ++LGV+H I RF+D
Sbjct: 61 SSVTLYLLHKILSKRRNVELTAFTVDEGISGYRPAGLESAIKLTKMLGVDHSIIRFQDSF 120
Query: 119 GFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMN 178
G TLD I+GA R+ CSYCG RR L+N+ AE D +ALGLNLDD Q LMN
Sbjct: 121 GMTLDS---IVGADASRI-PCSYCGPLRRKLINEMAERQNADYVALGLNLDDYSQSILMN 176
Query: 179 LMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEA 238
+ +GD RL R P E +GLV RI PLR V EKE+VLYAV+N I D S CPY A
Sbjct: 177 VAKGDYDRLLRMSPQKEA-KDGLVRRIAPLRSVLEKEVVLYAVINGIPFDSSWCPYYSRA 235
Query: 239 FRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICK 298
R R+ +N + E +P TK+ +L+ +++ + + L RC+ICG PT ++C
Sbjct: 236 QRNIFREVVNTLSEYNPSTKFSILKFFER---ARSDVQRNDKALGRCRICGAPTENDVCS 292
Query: 299 AC 300
AC
Sbjct: 293 AC 294
>pir||B69025 conserved hypothetical protein MTH1186 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622294|gb|AAB85675.1| (AE000887) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 278
Score = 249 bits (630), Expect = 3e-65
Identities = 126/284 (44%), Positives = 177/284 (61%), Gaps = 10/284 (3%)
Query: 24 KHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFPFEIVAITI 83
+ FN + +++ I + +IK GE I VA+SGGKDSV+ LH L+ LR FE+ AIT+
Sbjct: 4 QEFNHRIMGRIRGLIEGHELIKPGEHIAVALSGGKDSVLTLHALSDLRSDLDFELTAITV 63
Query: 84 DEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCG 143
DEGI GYR + V VA+ NAELLGVE F+D F LD + + C CG
Sbjct: 64 DEGIGGYRSEGVMVARENAELLGVELIERSFRDEFNFELDSVTDRFSS------PCIPCG 117
Query: 144 VWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVP 203
V+RRW+LN+ A E+ K+A G N+DDE+Q F+M+L RGDV + + GP + IH +VP
Sbjct: 118 VFRRWILNRTAREIGASKIATGHNMDDEIQSFIMSLARGDVRKFSKFGPELQRIHPAMVP 177
Query: 204 RIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLR 263
RIKPL PE E+ L+AVLN+++V L CPY+ + R+ IRD+LN +E G K +++
Sbjct: 178 RIKPLWSTPESEVRLWAVLNDVKVHLDSCPYSDLSMRSRIRDFLNHLESEKQGVKLRVME 237
Query: 264 SYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKACQFRLQVK 307
S + F L++T L C CG+P+SG+ CKAC+F +K
Sbjct: 238 SLSRTFLPLSETEG----LRECLRCGEPSSGDKCKACEFLELIK 277
>pir||A69100 conserved hypothetical protein MTH1742 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622874|gb|AAB86212.1| (AE000930) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 270
Score = 242 bits (612), Expect = 3e-63
Identities = 115/274 (41%), Positives = 175/274 (62%), Gaps = 5/274 (1%)
Query: 36 RTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSV 95
R IRKY++I++G+R+ V +SGGKDSV+++ +L +LR+R E+ A+TIDEGI GYR+ V
Sbjct: 2 RDIRKYKLIERGDRVLVGLSGGKDSVMVIDILDELRERNIIELEAVTIDEGIGGYREDGV 61
Query: 96 EVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAE 155
+A++ G+ H + +DY G TLDE + + AC+YCGV+RRW+LN+ A
Sbjct: 62 RIARKICADRGIPHRVVSLEDYAGITLDEIM-----KNPSRSACTYCGVFRRWILNREAR 116
Query: 156 ELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKE 215
+ K K+A G NLDDE Q +MN + G++ L R GP +P+IKPLRE+PEKE
Sbjct: 117 KSKATKIATGHNLDDETQAIVMNYLEGNLENLTRIGPMTSSAGGRFIPKIKPLREIPEKE 176
Query: 216 IVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKT 275
+ LY + ++V L+ CPYA +FR EI D+L ++ + P Y LR +D+I +L +
Sbjct: 177 VALYVLARGLDVHLAGCPYASGSFRREIGDFLKQISVKRPTIMYSTLRGFDRIKEILRRD 236
Query: 276 YAKEVKLNRCKICGQPTSGEICKACQFRLQVKER 309
++ + C CG+P SG++CKAC F ++ +R
Sbjct: 237 LSESGRSGICVKCGEPASGKLCKACTFIEELTKR 270
>pir||D75016 hypothetical protein PAB1092 - Pyrococcus abyssi (strain Orsay)
>gi|5459084|emb|CAB50570.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 303
Score = 225 bits (567), Expect = 6e-58
Identities = 126/303 (41%), Positives = 175/303 (57%), Gaps = 15/303 (4%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
MKC C REA Y Y C +HF E E KV+RTI KY+++KK E+I VAVSGGKDS
Sbjct: 1 MKCKFCSREAYIKLHYPKMYLCEEHFKEYFERKVQRTIEKYKLLKKDEKILVAVSGGKDS 60
Query: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
V ++L KL + I + I+ GI Y KS E AK+ EL+G HI R K+ +G+
Sbjct: 61 AVTAYVLNKL----GYNIECLHINLGIGEYSKKSEEYAKKQCELIGAPLHIVRIKEILGY 116
Query: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
+ E R CSYCG+ +R+++NK A + D +A G NLDDE L NL+
Sbjct: 117 GIGEV-------KTRRPTCSYCGLTKRYIMNKFAYDNGFDAIATGHNLDDEASFLLNNLL 169
Query: 181 RGDVARLGRTGPYYEVIHEG-LVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAF 239
+ + + GP EG V ++KPL E+ E+E+V YA+ +E + ECPYA A
Sbjct: 170 YWNTEYIAKGGPLLPA--EGKFVKKVKPLYELTEREVVAYALAVGLEYIVEECPYARGAT 227
Query: 240 RAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKA 299
+++ LNE+EE+ PGTKY +R Y K L ++ + +L CKICG P+SG+IC
Sbjct: 228 TLDMKAVLNELEEKRPGTKYNFVRGYVKKKKLF-ESEIRRKELKECKICGMPSSGDICAF 286
Query: 300 CQF 302
C+F
Sbjct: 287 CRF 289
>pir||F71455 hypothetical protein PH0300 - Pyrococcus horikoshii
>gi|3256690|dbj|BAA29373.1| (AP000001) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 223 bits (562), Expect = 2e-57
Identities = 123/303 (40%), Positives = 175/303 (57%), Gaps = 15/303 (4%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
MKC C REA Y Y C +HF E E KV RTI +Y+++ K ERI VAVSGGKDS
Sbjct: 1 MKCKFCSREAYIKIHYPKMYLCEEHFKEYFERKVSRTIERYKLLTKDERILVAVSGGKDS 60
Query: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
V ++L KL + I + I+ GI GY +KS E AK+ +L+G HI R K+ +G+
Sbjct: 61 AVTAYVLKKL----GYNIECLHINLGISGYSEKSEEYAKKQCKLIGAPLHIVRIKEILGY 116
Query: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
+ E R CSYCG+ +R+++NK A + D +A G NLDDE L N++
Sbjct: 117 GIGEV-------KTRRPPCSYCGLTKRYIMNKFAYDNGFDAIATGHNLDDEASFLLNNIL 169
Query: 181 RGDVARLGRTGPYYEVIHEG-LVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAF 239
+ L + GP + +G + ++KPL EV E+E+V YA+ +E + ECPYA A
Sbjct: 170 HWNTEYLAKGGPI--LPQQGKFIKKVKPLYEVTEREVVAYALAVGLEYIVEECPYARGAT 227
Query: 240 RAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKA 299
+++ LNE+EE+ PGTK+ +R Y K L + KE ++ CKIC P+SG+IC
Sbjct: 228 TLDMKGVLNELEEKRPGTKFNFVRGYLKKKKLF-EPEIKEKEIKECKICRMPSSGDICAF 286
Query: 300 CQF 302
C+F
Sbjct: 287 CKF 289
>sp|Q58558|YB57_METJA HYPOTHETICAL PROTEIN MJ1157 >gi|2128701|pir||E64444 hypothetical
protein MJ1157 - Methanococcus jannaschii
>gi|1592323|gb|AAB99161.1| (U67558) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 341
Score = 222 bits (561), Expect = 3e-57
Identities = 122/310 (39%), Positives = 190/310 (60%), Gaps = 10/310 (3%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
M CS CG EA Y+ KY ++ C + F + +E + K+ + K +I+ +IG+ +SGGKDS
Sbjct: 38 MLCS-CGNEAFYYQKYSNRHLCKECFKKDIERRAKKVLGK-DIIRNNVKIGIGISGGKDS 95
Query: 61 VVLLHLLAKLRKRFP-FEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIG 119
+V+ ++L +L K P +++ +DEGIKG+R+ + + K + ++ I +F+D IG
Sbjct: 96 LVMAYILKELFKHIPNAKLICFFVDEGIKGFRNIAEKYVKEFCKEYNLDLKIIKFEDEIG 155
Query: 120 FTLDETVEIMGARGERLGA-CSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMN 178
+TLDE V+ +G CS+CGV RR+LLNK A + D LA+G NLDD Q LMN
Sbjct: 156 YTLDEIVKNDYLSKLNIGKPCSFCGVVRRYLLNKHALKEGCDYLAIGHNLDDFCQTILMN 215
Query: 179 LMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEA 238
+ G++ + + G +E G V RIKPL+ +PE+E+ LYA +NNI+ CPY+ +
Sbjct: 216 YVEGNIKNIIQFGKEFE--GGGFVKRIKPLKLIPEEEVKLYAEINNIKYQREPCPYSSLS 273
Query: 239 FRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICK 298
+R ++ + +EE PG K+ +LR Y+K LL KE ++ RC+ICG P SG ICK
Sbjct: 274 YRHRMKKVIEILEEEKPGVKFSILRGYEK---LLKYLNVKE-EIRRCEICGFPCSGNICK 329
Query: 299 ACQFRLQVKE 308
C + +++KE
Sbjct: 330 VCSWLIKLKE 339
>gb|AAG18803.1| (AE004984) Vng0190c [Halobacterium sp. NRC-1]
Length = 320
Score = 213 bits (538), Expect = 2e-54
Identities = 115/316 (36%), Positives = 182/316 (57%), Gaps = 21/316 (6%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKG------ERIGVAV 54
M C+KC R+AV A Y G + C HF + VE +V+R IR M+ E + +
Sbjct: 1 MDCTKCDRDAVMHAAYSGAHLCEPHFLDSVERRVRRRIRTDNMLSPDTTPDDPETWVIGL 60
Query: 55 SGGKDSVVLLHLLAKLRKRFP-FEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYR 113
SGGKDS VL L+ + + P E++A+TI EGI GYRD+S++ A + H +
Sbjct: 61 SGGKDSAVLTDLIEETFRDDPRVELIALTIHEGIAGYRDESLDACTTLAADRDIRHELVT 120
Query: 114 FKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQ 173
+++ +D+ + + C+YCGV+RR LL K A+E DKL G NLDDE +
Sbjct: 121 YREEFDVAMDDVADDDPLD---MAPCAYCGVFRRDLLAKYADEYDADKLLTGHNLDDEAE 177
Query: 174 VFLMNLMRGDV--------ARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNI 225
LMN++ G+V A LG E+ + ++PR KPLR++PEKE+ LYA L ++
Sbjct: 178 TALMNILEGNVTQIATHFDASLGSFDDRAEL--DAMIPRAKPLRDIPEKEVALYAQLRDL 235
Query: 226 EVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTY-AKEVKLNR 284
V ++ECP+A E+FR+++++ L E+E+R PGT++ ++ Y+++ + A Y + +
Sbjct: 236 PVHMAECPHASESFRSDLQEVLLELEDRRPGTRHSIMAGYEELAGIAADEYNTDDADVGE 295
Query: 285 CKICGQPTSGEICKAC 300
C CG PT+ + C+ C
Sbjct: 296 CSDCGAPTTRDRCRKC 311
>gb|AAK40900.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 323
Score = 199 bits (500), Expect = 5e-50
Identities = 118/311 (37%), Positives = 182/311 (57%), Gaps = 9/311 (2%)
Query: 1 MKCSKCG-REAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKD 59
M C C REAV + G+ C + F E + +V+ RK ++ +I +AVSGGKD
Sbjct: 1 MICDNCKTREAVILQPHTGRKLCKECFIEDIRKRVEMEARKQEIVNSN-KILLAVSGGKD 59
Query: 60 SVVLLHLLAKLRKRFPFEIVAITIDEGIKGY-RDKSVEVAKRNAELLGVEHHIYRFKDYI 118
S+VL L++ P ++A I+EGIKGY R++ V+ + + LG+E FK+ +
Sbjct: 60 SLVLADTLSQFIH--PSRLIAFNINEGIKGYNRNEYVKKLEEYLKDLGIELIKSGFKEEV 117
Query: 119 GFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMN 178
GF+LDE +E + + AC++CG +RR L+N+A ++ D +A G NLDDEVQ ++N
Sbjct: 118 GFSLDEMLEASLKKKLNVSACTFCGGFRRKLINEAGIKVAADYVATGHNLDDEVQTIVIN 177
Query: 179 LMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVE- 237
L+RGD+ RL R G ++ V R+KPLR++ E E +YA L E +ECPY +
Sbjct: 178 LIRGDLLRLIRFGDKPLMVSSKFVMRVKPLRKIYEWETTMYAHLKGFEFQETECPYISQK 237
Query: 238 -AFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTS--G 294
RA++RD L ++EE+ PGT ++L +D+I + K Y +L C ICG+PT+
Sbjct: 238 PTLRAKVRDLLYKLEEKKPGTLLRILEQFDEISEKIKKEYRLTNELPNCVICGEPTTPGR 297
Query: 295 EICKACQFRLQ 305
ICK C+ ++
Sbjct: 298 MICKNCELLIR 308
>emb|CAB57713.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 323
Score = 199 bits (500), Expect = 5e-50
Identities = 118/311 (37%), Positives = 182/311 (57%), Gaps = 9/311 (2%)
Query: 1 MKCSKCG-REAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKD 59
M C C REAV + G+ C + F E + +V+ RK ++ +I +AVSGGKD
Sbjct: 1 MICDNCKTREAVILQPHTGRKLCKECFIEDIRKRVEMEARKQEIVNSN-KILLAVSGGKD 59
Query: 60 SVVLLHLLAKLRKRFPFEIVAITIDEGIKGY-RDKSVEVAKRNAELLGVEHHIYRFKDYI 118
S+VL L++ P ++A I+EGIKGY R++ V+ + + LG+E FK+ +
Sbjct: 60 SLVLADTLSQFIH--PSRLIAFNINEGIKGYNRNEYVKKLEEYLKDLGIELIKSGFKEEV 117
Query: 119 GFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMN 178
GF+LDE +E + + AC++CG +RR L+N+A ++ D +A G NLDDEVQ ++N
Sbjct: 118 GFSLDEMLEASLKKKLNVSACTFCGGFRRKLINEAGIKVAADYVATGHNLDDEVQTIVIN 177
Query: 179 LMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVE- 237
L+RGD+ RL R G ++ V R+KPLR++ E E +YA L E +ECPY +
Sbjct: 178 LIRGDLLRLIRFGDKPLMVSSKFVMRVKPLRKIYEWETTMYAHLKGFEFQETECPYISQK 237
Query: 238 -AFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTS--G 294
RA++RD L ++EE+ PGT ++L +D+I + K Y +L C ICG+PT+
Sbjct: 238 PTLRAKVRDLLYKLEEKKPGTLLRILEQFDEISEKIKKEYRLTNELPNCVICGEPTTPGR 297
Query: 295 EICKACQFRLQ 305
ICK C+ ++
Sbjct: 298 MICKNCELLIR 308
>pir||E72407 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980693|gb|AAD35289.1|AE001704_10 (AE001704)
conserved hypothetical protein [Thermotoga maritima]
Length = 304
Score = 197 bits (495), Expect = 2e-49
Identities = 120/313 (38%), Positives = 167/313 (53%), Gaps = 13/313 (4%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
MKC+KCG+ A ++ C +HFNE +E +V++ I+K++M + +I +AVSGGKDS
Sbjct: 1 MKCTKCGKPASVKLRHYNIKLCKEHFNEFIEQRVEKAIKKFKMFGRNSKILIAVSGGKDS 60
Query: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
V L H+L KL +E+ A+ I G G K+ E+ ++NAELL + HI +Y G
Sbjct: 61 VSLWHMLKKLG----YEVDALFIRAGKSGMVQKAQEIVEKNAELLNTKLHIVDATEYFGG 116
Query: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
+ + IM R CS CGV RR+L+NK A E D + G NL+DE V L N++
Sbjct: 117 LSTQEISIMLRRP----VCSICGVVRRYLMNKFAYENGYDVVVTGHNLNDEASVLLGNIL 172
Query: 181 RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR 240
L R P HE LVP+ KPL E++I LYA LN I CP++V A
Sbjct: 173 HWQEGYLERQWPLLPKTHEKLVPKAKPLVLNYEEDIKLYATLNEIPHLEMACPFSVGATS 232
Query: 241 AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVK-LNRCKICGQPTSGEICKA 299
+ L E+EE PG + K K EV+ L CK CG PT+ E+C
Sbjct: 233 LVYKKILRELEEEQPGITLNFYLGFLK----RKKEPKFEVEGLRECKECGYPTTAEVCSF 288
Query: 300 CQFRLQVKERAEK 312
C+ R QV++R K
Sbjct: 289 CRLRKQVEKRKNK 301
>pir||E70415 conserved hypothetical protein aq_1333 - Aquifex aeolicus
>gi|2983761|gb|AAC07321.1| (AE000735) hypothetical
protein [Aquifex aeolicus]
Length = 301
Score = 189 bits (476), Expect = 3e-47
Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%)
Query: 2 KCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSV 61
KC CG++A+ + + C +HF E E +RTI++++M K +++ VA+SGGKDS+
Sbjct: 3 KCRICGKKAIIYMPHHRLALCREHFVEWFEKYTERTIKEFKMFTKKDKVLVAISGGKDSL 62
Query: 62 VLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFT 121
L H+L KL +E + I+ GI Y +KS E + AE + + I K+ +
Sbjct: 63 ALWHVLRKL----GYEADGLYINLGIGEYSEKSKEKVLKFAEKINGKAIIVDLKEELA-G 117
Query: 122 LDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMR 181
+ E V+I ACS CG+ +R+ NK A+E + +A G NLDDE L N++
Sbjct: 118 IPELVKITSRE-----ACSVCGLVKRYNFNKVAKEHGYNVIATGHNLDDEASALLANVLN 172
Query: 182 GDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRA 241
+ LGR P E G V ++KP + EKE LYA+LN I+ ECP++ +A
Sbjct: 173 WNEKYLGRKYPVLEE-EAGFVRKVKPFCKFTEKETALYALLNGIDFIEEECPFSEDATSV 231
Query: 242 EIRDWLNEMEERHPGTKYQLLRSY-DKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
+ LNE+EER PGTK + Y KI+P K K+ +L CK+CG+PT GEIC C
Sbjct: 232 FYKKILNEIEERSPGTKLRFYLDYLRKIYPKFRKEEEKK-ELQPCKVCGEPTVGEICPVC 290
Query: 301 QFRLQVK 307
+ R +V+
Sbjct: 291 RLREKVE 297
>pir||T02383 hypothetical protein F4I1.8 - Arabidopsis thaliana
>gi|3128173|gb|AAC16077.1| (AC004521) hypothetical
protein [Arabidopsis thaliana]
Length = 358
Score = 187 bits (469), Expect = 2e-46
Identities = 103/284 (36%), Positives = 165/284 (57%), Gaps = 13/284 (4%)
Query: 22 CHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKR--FPFEIV 79
C + F E+ E ++ + I + R+ K GER+ + SGGKDS VL ++L++L +R + ++
Sbjct: 34 CRECFYEVFEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSELNRRHNYGLDLF 93
Query: 80 AITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGAC 139
++IDEGI GYRD S+E KRN G+ I +KD G+T+DE V+++G + C
Sbjct: 94 LLSIDEGITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNN----C 149
Query: 140 SYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHE 199
++CGV+RR L++ A LKV+KL G N DD + L+N++RGD+ARL R +
Sbjct: 150 TFCGVFRRQALDRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLSRC-TSITTGED 208
Query: 200 GLVPRIKPLREVPEKEIVLYAVLNN---IEVDLSECPYAVEAFRAEIRDWLNEMEERHPG 256
G +PR KP + EKEIV+Y L+N ++ +EC Y+ A+R R+++ ++E P
Sbjct: 209 GPIPRCKPFKYTYEKEIVIYPSLHNAFKLDYFSTECIYSPNAYRGFAREFIKDLERIRPR 268
Query: 257 TKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
+++S + T K + C+ CG +S + CKAC
Sbjct: 269 AILDIIKSGE---DFRIATTTKMPEQGTCERCGYISSQKWCKAC 309
>gb|AAF58991.1| (AE003834) CG8078 gene product [Drosophila melanogaster]
Length = 343
Score = 186 bits (467), Expect = 3e-46
Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 9/299 (3%)
Query: 4 SKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVL 63
S+CG A G C + F E+++ TI + ++GE++ VA SGGKDS VL
Sbjct: 7 SQCGNRAALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRGEKVAVAASGGKDSTVL 66
Query: 64 LHLLAKLRKR--FPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFT 121
H+L L +R + E+V ++IDEGI GYRD S+E K+N + + I +++ G+T
Sbjct: 67 AHVLKLLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNRDDYQMPLKILSYEELYGWT 126
Query: 122 LDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMR 181
+D V +G R C++CGV+RR L++ A+ L VD +A G N DD + LMN++R
Sbjct: 127 MDRIVAQIG----RSNNCTFCGVFRRQALDRGAKLLGVDSIATGHNADDIAETVLMNVLR 182
Query: 182 GDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRA 241
GD ARL R E +PR+KPL+ EKEIV+YA + +EC +A A+R
Sbjct: 183 GDTARLRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRG 242
Query: 242 EIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
R +L ++E+ P ++ S ++ L K K+ + C CG +S + CKAC
Sbjct: 243 HARAFLKDLEKVRPSVIMDIIYSGEQ---LRFKDTVKKPERGTCTRCGFVSSQQPCKAC 298
>pir||T33145 hypothetical protein F29C4.6 - Caenorhabditis elegans
>gi|3193157|gb|AAC19193.1| (AF067616) contains
similarity to S. cerevisiae YGL211w (GB:Z72733)
[Caenorhabditis elegans]
Length = 373
Score = 185 bits (466), Expect = 5e-46
Identities = 110/307 (35%), Positives = 168/307 (53%), Gaps = 26/307 (8%)
Query: 4 SKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVL 63
S C A +G C F+ E V I ++ K+GER+ + SGGKDS VL
Sbjct: 14 SGCSNPAKIRKAKDGAQLCGPCFSRNFEDDVHEAIVNNKLFKRGERVAIGASGGKDSTVL 73
Query: 64 LHLLAKLRKRFPF--EIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFT 121
+++ L R + ++ ++IDEGIKGYRD S+ ++N G+ I ++D G+T
Sbjct: 74 AYVMKTLNDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNRVEYGLPLTILSYRDLYGWT 133
Query: 122 LDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMR 181
+D+ V +G + C++CGV+RR L++ A ++ KL G N DD + LMN++R
Sbjct: 134 MDDIVAKIGKKNN----CTFCGVFRRQALDRGAFKIGATKLVTGHNADDMAETLLMNVLR 189
Query: 182 GDVARLGR-----TGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAV 236
GD+ARL R TG EG +PR KPL+ E++IV+YA N +E +EC YA
Sbjct: 190 GDIARLERCTNIVTG------EEGDLPRAKPLKYCFERDIVMYARTNQLEYFYTECIYAP 243
Query: 237 EAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVK---LNRCKICGQPTS 293
A+R R ++ ++E+ HP L+RS +K+ + KEV+ L C+ CG TS
Sbjct: 244 NAYRGYARKYVRDLEKVHPRAILDLIRSGEKV------SVKKEVEMPTLKICERCGYMTS 297
Query: 294 GEICKAC 300
++CKAC
Sbjct: 298 QKLCKAC 304
>sp|Q58873|YE78_METJA HYPOTHETICAL PROTEIN MJ1478 >gi|2128886|pir||E64484 hypothetical
protein MJ1478 - Methanococcus jannaschii
>gi|1592117|gb|AAB99482.1| (U67588) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 303
Score = 183 bits (460), Expect = 2e-45
Identities = 109/311 (35%), Positives = 164/311 (52%), Gaps = 15/311 (4%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
MKC C +++ K Y C +HF E E+KVK++I KY+M+ K E+I VAVSGGKD
Sbjct: 5 MKCKFCDKKSYIKLKSPKMYLCKEHFVEYFENKVKKSIDKYKMLSKDEKILVAVSGGKDG 64
Query: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
H A + K+ + I I+ GI+G+ ++S++ K AE L V H+ KD G
Sbjct: 65 ----HAAAWVLKKLGYNIELFHINLGIEGFSEESLKAVKELAEKLEVPLHVVNLKDITGK 120
Query: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
T+++ RG++ CS CG +R+L+NK E D + G NLDDEV L NL
Sbjct: 121 TMED------IRGKK---CSICGTTKRYLMNKFGYENGFDVIVTGHNLDDEVSFILNNLF 171
Query: 181 RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR 240
++ L + P H+ + ++K E+ E+ I+ YA I EC YA A
Sbjct: 172 NWNIRYLAKHEPVLPA-HDKFLKKVKIFFEIEEELILKYAEAEEIPYTTVECKYAERAIT 230
Query: 241 AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
+ R +LNE+E+ PG KYQ L Y K L K ++ + C++CG ++G+IC C
Sbjct: 231 LKHRAYLNELEKERPGIKYQFLSGYMKNRHLF-KVEEEDFQFRECEVCGMTSAGKICSFC 289
Query: 301 QFRLQVKERAE 311
+ K++ E
Sbjct: 290 RVWKLYKKKKE 300
>pir||A72514 hypothetical protein APE2086 - Aeropyrum pernix (strain K1)
>gi|5105785|dbj|BAA81097.1| (AP000063) 331aa long
hypothetical protein [Aeropyrum pernix]
Length = 331
Score = 183 bits (460), Expect = 2e-45
Identities = 107/302 (35%), Positives = 167/302 (54%), Gaps = 11/302 (3%)
Query: 2 KCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSV 61
+CS CG AV + +Y+ +Y C H+ E VESKV+R I ++R++ KG+R+ AVSGGKDS
Sbjct: 3 RCSVCGAPAVAYIRYQRRYLCRDHYLEFVESKVERAIMRHRLVGKGDRVLAAVSGGKDSS 62
Query: 62 VLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFT 121
LL +L++L +R F +VA+ I GI Y +KS E + R A L V ++ + +G
Sbjct: 63 TLLAVLSRLSRRIGFHVVALYIHLGIYEYSEKSREASIRLASQLDVPLIVFDLNEVLGAG 122
Query: 122 LDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMR 181
+ E A+ + CS CG+ +R+++N AA EL VD +ALG N DD L + +
Sbjct: 123 IPEL-----AKASKRPPCSVCGMVKRYVINAAAVELGVDAVALGHNADDIAVYNLKSFLN 177
Query: 182 GDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAV-EAFR 240
D+ + + G E I V R++PL V EKE LY++L + ECP+
Sbjct: 178 QDLEAISKLGVKTESIPGVAVGRVRPLYYVYEKESFLYSLLAGLPFLHEECPFVERRQME 237
Query: 241 AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAK-EVKLNRCKICGQPTSGEICKA 299
E+++ +N++E++ PG K Q++ K + Y K + + RC CG +SG C
Sbjct: 238 VELKETVNQLEDKRPGLKLQMVSKLAK----RVEDYPKPKGSIGRCPSCGLLSSGGECSF 293
Query: 300 CQ 301
C+
Sbjct: 294 CR 295
>pir||T40160 conserved hypothetical protein SPBC2G5.03 - fission yeast
(Schizosaccharomyces pombe) >gi|3850068|emb|CAA21879.1|
(AL033385) hypothetical protein [Schizosaccharomyces
pombe]
Length = 335
Score = 181 bits (455), Expect = 9e-45
Identities = 105/302 (34%), Positives = 162/302 (52%), Gaps = 9/302 (2%)
Query: 3 CSKCG-REAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSV 61
C C R G+ C + F + E+++ I + ++ +GER+G+ SGGKDS
Sbjct: 6 CQLCNERRPALVRPKTGQKICKECFYYVFETEIHNVIIENKLFVRGERVGIGASGGKDST 65
Query: 62 VLLHLLAKLRKRFPF--EIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKD-YI 118
VL +++ L +R+ + E+ I++DEGI+GYRD S++ KRN + G+ I + D Y
Sbjct: 66 VLAYVMKLLNERYDYGLELYLISVDEGIRGYRDDSLDTVKRNQQQYGLPMKIVSYADLYD 125
Query: 119 GFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMN 178
G+T+D V +G + C+YCGV+RR L++AA L + L G N DD + LMN
Sbjct: 126 GWTMDNVVARIGTKNN----CTYCGVFRRQALDRAALSLDIHHLVTGHNADDIAETILMN 181
Query: 179 LMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEA 238
L+RGDVARL R+ R KP + EKEIVLYA ++ +EC Y+ EA
Sbjct: 182 LLRGDVARLPRSTEITTQSDSSPTKRSKPFKYSYEKEIVLYAHYKKLDYFSTECTYSPEA 241
Query: 239 FRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICK 298
FR R + ++E P + ++ S + + L + + + C+ CG +S ICK
Sbjct: 242 FRGTARAMIKQLENIRPSSILDIIYSGESM-QLASSVQEQLPQQTTCERCGFISSNRICK 300
Query: 299 AC 300
AC
Sbjct: 301 AC 302
>pir||H72637 hypothetical protein APE0537 - Aeropyrum pernix (strain K1)
>gi|5104189|dbj|BAA79504.1| (AP000060) 324aa long
hypothetical protein [Aeropyrum pernix]
Length = 324
Score = 181 bits (455), Expect = 9e-45
Identities = 109/292 (37%), Positives = 163/292 (55%), Gaps = 8/292 (2%)
Query: 15 KYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRF 74
++ G+ C + F E + +V+R + ++ MI GE + + +SGGKDS VLL L+++
Sbjct: 5 RHTGRRLCRECFREDIVGRVRREVERWGMIGPGETVLLGLSGGKDSYVLLDALSEIVG-- 62
Query: 75 PFEIVAITIDEGIKGY-RDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARG 133
P +VA++I EGI GY R+ +E +R A GV+ + ++Y+G +L E RG
Sbjct: 63 PSRLVAVSIVEGIPGYNREGDIEKIRRVAAARGVDVIVTSIREYVGASLYEIYSRARGRG 122
Query: 134 ERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPY 193
AC+YCG+ RR +L A K+A NLDDE Q ++N +RGD + +T P
Sbjct: 123 AGHAACTYCGISRRRILALYARLYGAHKVATAHNLDDEAQTAIVNFLRGDWVGMLKTHPL 182
Query: 194 YEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPY--AVEAFRAEIRDWLNEME 251
Y E LVPRIKPLR+V E E Y VL+ + +ECP+ RA +R L +E
Sbjct: 183 YRSGGEDLVPRIKPLRKVYEWETASYVVLHRYPIQEAECPFINMNPTLRARVRTALRVLE 242
Query: 252 ERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGE--ICKACQ 301
ER PGT +++ D+ LA+ K L RC+ CG+PTS + +CK C+
Sbjct: 243 ERSPGTLLRMMERLDEELRPLAQA-MKPSSLGRCERCGEPTSPKRRLCKLCE 293
>sp|P53088|YGW1_YEAST HYPOTHETICAL 35.5 KD PROTEIN IN VAM7-YPT32 INTERGENIC REGION
>gi|2131296|pir||S71668 hypothetical protein 1 - yeast
(Saccharomyces cerevisiae) >gi|7445411|pir||S64230
hypothetical protein YGL211w - yeast (Saccharomyces
cerevisiae) >gi|1655726|gb|AAC49498.1| (U33754) unknown
[Saccharomyces cerevisiae]
Length = 317
Score = 179 bits (450), Expect = 3e-44
Identities = 103/279 (36%), Positives = 155/279 (54%), Gaps = 11/279 (3%)
Query: 22 CHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFPF--EIV 79
C + F + E+++ TI + ++GE++ V SGGKDS VL H+L L R+ + EIV
Sbjct: 42 CKQCFCLVFETEIHNTIVANNLFQRGEKVAVGASGGKDSTVLAHMLKLLNDRYDYGIEIV 101
Query: 80 AITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGAC 139
++IDEGI GYRD S+ KRN + G+ I+ FKD +T+DE V + G R +C
Sbjct: 102 LLSIDEGIIGYRDDSLATVKRNQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIR----NSC 157
Query: 140 SYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHE 199
+YCGV+RR L++ A +L + + G N DD + LMN++RGDVARL ++
Sbjct: 158 TYCGVFRRQSLDRGAAKLGISHVVTGHNADDMAETVLMNILRGDVARLEKSTAIITQSSG 217
Query: 200 GLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKY 259
+ R KP + +KEIVLYA ++ +EC YA EAFR R+++ +E P
Sbjct: 218 SPIKRSKPFKYSYQKEIVLYAHYMKLDYFSTECTYAPEAFRGTAREYMKNLEAVRPSCII 277
Query: 260 QLLRSYDKIFPLLAKTYA-----KEVKLNRCKICGQPTS 293
+++S + + K+ A K V NRC CG +S
Sbjct: 278 DIIQSGENLALKAKKSNAGKRVVKFVDGNRCARCGYLSS 316
>sp|Q94480|V136_DICDI VEG136 PROTEIN >gi|1513300|gb|AAB06790.1| (U66527) ORFveg136;
similar to Saccharomyces cerevisiae chromosome VII
reading frame ORF YGL211w encoded by EMBL Accession
Number Z72733 [Dictyostelium discoideum]
Length = 357
Score = 179 bits (449), Expect = 4e-44
Identities = 101/311 (32%), Positives = 164/311 (52%), Gaps = 26/311 (8%)
Query: 18 GKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFPF- 76
G+ C + F + E ++ TI + K+G+R+ + SGGKDS VL ++ L K++ +
Sbjct: 26 GEMICKECFYTVFEDEIHHTIISNNLFKRGDRVAIGASGGKDSTVLAEIMTLLNKKYDYG 85
Query: 77 -EIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGER 135
++ ++IDEGI GYRD S+E KRN E + I +K+ +T+D+ V+ +G +G
Sbjct: 86 LDLFLLSIDEGITGYRDDSLETVKRNQEQYPIPSQILSYKELYNWTMDDIVKEIGLKGN- 144
Query: 136 LGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGR-----T 190
C+ CGV+RR L++ A LK +K+ G N DD + M+L+RGD+ RL R T
Sbjct: 145 ---CTSCGVFRRQALDRGAVMLKANKIVTGHNADDIAETVFMDLLRGDIPRLQRCVNIIT 201
Query: 191 GPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEM 250
G EG +PR KP + ++EIV+YA ++ +EC YA A+R RD+L ++
Sbjct: 202 G------SEGALPRSKPFKYTYQREIVMYAYFKKLDYFSTECIYAPNAYRGHARDFLKDL 255
Query: 251 EERHPGTKYQLLRSYDKIFPLLAKTYAKEVKL---NRCKICGQPTSGEICKACQFRLQVK 307
E P ++ S + + +E K+ C CG S +IC AC +
Sbjct: 256 EAVRPSIIIDIIHSAENFH------FREENKMPVQRNCIQCGYICSNDICMACDLLKNLN 309
Query: 308 ERAEKLKFTLS 318
K+K +++
Sbjct: 310 SGLAKVKLSIN 320
>gi|11498919 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429996|pir||H69414 conserved hypothetical protein
AF1321 - Archaeoglobus fulgidus
>gi|2649255|gb|AAB89924.1| (AE001012) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 287
Score = 166 bits (417), Expect = 3e-40
Identities = 102/303 (33%), Positives = 160/303 (52%), Gaps = 20/303 (6%)
Query: 1 MKCSKCGREAVYFAKYEGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDS 60
MKC KCGR+AV K G C K + E + VKR+I+++R+++ ER+ +A+SGGKDS
Sbjct: 1 MKCKKCGRKAVANLKAYGIALCEKCYPEFYRNLVKRSIKRFRILRPEERVLIAISGGKDS 60
Query: 61 VVLLHLLAKLRKRFPFEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGF 120
L +L K ++ + ID GI Y ++S V + + L + ++ R +DY GF
Sbjct: 61 SALAAVL----KELDYDAELLYIDLGIGNYSEESERVVRELSSSLDLSLNVVRLRDY-GF 115
Query: 121 TLDETVEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLM 180
T+D+ AR R CS CG +R+++N+ A E D +A G +D ++ N+
Sbjct: 116 TVDDV-----ARKMRRKTCSACGTAKRYIMNRFARENSFDVVATGHTAEDIASFYIKNVA 170
Query: 181 RGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFR 240
G + P E E +V R KPL EV EKE +LY ++N+I L ECP+A
Sbjct: 171 GGTRVWAEKLMPRNEPFDEKIVTRAKPLFEVSEKENMLYVLVNDIPHTLMECPHAP---N 227
Query: 241 AEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNRCKICGQPTSGEICKAC 300
E ++ + ++E R PG +R L + + + CKICG+ +SG++C C
Sbjct: 228 PEWKEIVYDIERRKPGFVKNFVRG-------LVRPAEEFEETKYCKICGEVSSGDVCAFC 280
Query: 301 QFR 303
+ R
Sbjct: 281 RLR 283
>gb|AAF17646.1|AC009978_22 (AC009978) T23E18.11 [Arabidopsis thaliana]
Length = 412
Score = 138 bits (343), Expect = 1e-31
Identities = 95/316 (30%), Positives = 155/316 (48%), Gaps = 51/316 (16%)
Query: 24 KHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFPF--EIVAI 81
K F E+ E ++ + I R+ K GER+ + SGGKDS VL ++L++L +R + ++ +
Sbjct: 61 KCFYEVFEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSELNRRHSYGLDLFLL 120
Query: 82 TIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSY 141
+IDEGI GYRD S+E KRN G+ I +KD G+T+DE V+++G + C++
Sbjct: 121 SIDEGITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNN----CTF 176
Query: 142 CGVWRRWL---------------------------------LNKAAEELKVDKLALGLNL 168
CGV+RR + L++ A LKVDKL G N
Sbjct: 177 CGVFRRQVRSKFLHSIPSLSKFLQNRLFCFMILCLVEFLKALDRGAALLKVDKLVTGHNA 236
Query: 169 DDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIEVD 228
DD + ++N++RGD+ARL R +G +PR R + + + N+
Sbjct: 237 DDIAETVVLNILRGDIARLSRC-TSITTGEDGPIPRF--TRMLISRSWTTSPL--NVSCA 291
Query: 229 LSE----CPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFPLLAKTYAKEVKLNR 284
S+ C Y+ A+R +++N++E P +++S + T K +
Sbjct: 292 FSKFCCFCIYSPNAYRGFACEFINDLERLRPRAILDIIKSGE---DFRIATTTKMPEQGT 348
Query: 285 CKICGQPTSGEICKAC 300
C+ CG +S + CKAC
Sbjct: 349 CERCGYISSQKWCKAC 364
>gi|6321227 Ygl211wp [Saccharomyces cerevisiae] >gi|1322852|emb|CAA96927.1|
(Z72733) ORF YGL211w [Saccharomyces cerevisiae]
Length = 193
Score = 108 bits (267), Expect = 1e-22
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 6/135 (4%)
Query: 22 CHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFPF--EIV 79
C + F + E+++ TI + ++GE++ V SGGKDS VL H+L L R+ + EIV
Sbjct: 42 CKQCFCLVFETEIHNTIVANNLFQRGEKVAVGASGGKDSTVLAHMLKLLNDRYDYGIEIV 101
Query: 80 AITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGAC 139
++IDEGI GYRD S+ KRN + G+ I+ FKD +T+DE V + G R +C
Sbjct: 102 LLSIDEGIIGYRDDSLATVKRNQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIR----NSC 157
Query: 140 SYCGVWRRWLLNKAA 154
+YCGV+RR L++ A
Sbjct: 158 TYCGVFRRQSLDRGA 172
>pir||C75514 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458168|gb|AAF10060.1|AE001907_6 (AE001907)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 299
Score = 105 bits (259), Expect = 8e-22
Identities = 80/241 (33%), Positives = 116/241 (47%), Gaps = 17/241 (7%)
Query: 33 KVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFP--FEIVAITIDEGIKGY 90
+V + I YRMI++G+R+ V +SGGKDS LL +L L+K+ P FE+VA+ +D+G G+
Sbjct: 27 QVGQAIGDYRMIEQGDRVMVCLSGGKDSYTLLDVLLHLQKKAPIDFEVVAVNLDQGQPGF 86
Query: 91 RDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLL 150
+V R LGV H I T D + E CS C RR +L
Sbjct: 87 ---PKDVLPRYLTALGVRHDI--------LTEDTYSVVKEKTPEGKTTCSLCSRLRRGIL 135
Query: 151 NKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLRE 210
+ A E+ K+ALG + +D ++ MN+ G ARL P + +G I+PL
Sbjct: 136 YQHAREIGATKIALGHHREDILETLFMNMFFG--ARLKAMPPKLQ-SDDGTNVVIRPLAY 192
Query: 211 VPEKEIVLYAVLNNIEV-DLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIF 269
V E +I+ YA V + C R + D L E HPG +LRS ++
Sbjct: 193 VAEADIIRYAQAREFPVIPCNLCGAQPNLQRKVVGDMLEGWEREHPGRLNNILRSLTRVT 252
Query: 270 P 270
P
Sbjct: 253 P 253
>sp|Q57909|Y485_METJA HYPOTHETICAL PROTEIN MJ0485 >gi|2128338|pir||E64360 hypothetical
protein MJ0485 - Methanococcus jannaschii
>gi|1591188|gb|AAB98476.1| (U67498) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 337
Score = 98.7 bits (242), Expect = 8e-20
Identities = 79/264 (29%), Positives = 131/264 (48%), Gaps = 29/264 (10%)
Query: 28 EMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFPFEIVAITIDEGI 87
E V +KV R I K+++I + + V +SGGKDS++LLHLL R+++ +++A+T+D I
Sbjct: 58 EYVSTKVGRFINKHKIIAPRDIVIVGLSGGKDSLLLLHLLEVYRRKYGIKLIAVTVDVNI 117
Query: 88 KGYR-----DKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYC 142
G R + V++ K + E+L V H I + D L E + ++G C C
Sbjct: 118 GGIRPWKEDTEGVKLIKHHCEMLNVPHIILK-NDLDVVELSE-ILTKHSKGMEFSPCFSC 175
Query: 143 GVWRRWLLNKAAEELKVD--------KLALGLNLDDEVQVFLMNLMRGDVARLGR---TG 191
V +R LL K A+E+ + KLA G NLDD L N+ +G+ + R
Sbjct: 176 SVIKRHLLGKLAKEIAENENIPYEKVKLAYGHNLDDNSDTILANIFKGERLKFMRPLTRF 235
Query: 192 PYYEVIHEGL-VPR-----IKPLREVPEKEIVLYAVLNNIEV--DLSECPYA---VEAFR 240
Y EV ++ +P I+P+ + E++I+ IE D CPY+ ++ R
Sbjct: 236 KYNEVDYQSFKIPLEECIIIRPMLPILERDIIKALEECGIEYYKDKDMCPYSRDRGDSVR 295
Query: 241 AEIRDWLNEMEERHPGTKYQLLRS 264
+ L ++EE P + ++ S
Sbjct: 296 RRCHEILEKLEEEIPNIREMVVSS 319
>pir||D82199 conserved hypothetical protein VC1432 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655931|gb|AAF94589.1|
(AE004222) conserved hypothetical protein [Vibrio
cholerae]
Length = 310
Score = 91.3 bits (223), Expect = 1e-17
Identities = 71/257 (27%), Positives = 119/257 (45%), Gaps = 17/257 (6%)
Query: 17 EGKYYCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFP- 75
+ + Y + + + I + MI+ G+RI V +SGGKDS +L +L L+K P
Sbjct: 10 KAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMSLQKSAPI 69
Query: 76 -FEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGE 134
FE+VA+ +D+ G+ + V E LGVE+ I +D D+ E G+
Sbjct: 70 SFELVAVNLDQKQPGFPE---HVLPEYLESLGVEYKIVE-EDTYAIVQDKVPE-----GK 120
Query: 135 RLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYY 194
C+ C RR +L + A+EL K+ALG + DD ++ +N+ G + P
Sbjct: 121 T--TCALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKM---KGMPPK 175
Query: 195 EVIHEGLVPRIKPLREVPEKEIVLYAVLNNIE-VDLSECPYAVEAFRAEIRDWLNEMEER 253
V G I+PL EK+I+ Y+ + + + C R ++ LN+ ++R
Sbjct: 176 LVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKR 235
Query: 254 HPGTKYQLLRSYDKIFP 270
PG + R+ + P
Sbjct: 236 FPGRIETMFRAMQNVVP 252
>pir||E81837 hypothetical protein NMA1465 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380115|emb|CAB84699.1|
(AL162756) hypothetical protein NMA1465 [Neisseria
meningitidis Z2491]
Length = 319
Score = 87.4 bits (213), Expect = 2e-16
Identities = 70/236 (29%), Positives = 111/236 (46%), Gaps = 17/236 (7%)
Query: 38 IRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFP--FEIVAITIDEGIKGYRDKSV 95
I + MI+ G++I V +SGGKDS LL +L +L+ P F++VA+ +D+ G+ +
Sbjct: 26 INDFNMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPIDFQLVAVNLDQKQPGFPE--- 82
Query: 96 EVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAE 155
EV E +GV + I Y TV+ + G+ CS C RR +L + A+
Sbjct: 83 EVLPTYLESIGVPYKIVEEDTY------STVKRVLDEGKT--TCSLCSRLRRGILYRTAK 134
Query: 156 ELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKE 215
EL K+ALG + DD + +N+ G + P V G I+PL V EK+
Sbjct: 135 ELGCTKIALGHHRDDILATLFLNMFYGGKL---KAMPPKLVSDNGEHIVIRPLAYVKEKD 191
Query: 216 IVLYAVLNNIE-VDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFP 270
++ YA L + + C R I D L + ++R PG + + + P
Sbjct: 192 LIKYAELKQFPIIPCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVP 247
>pir||C83497 conserved hypothetical protein PA1192 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947118|gb|AAG04581.1|AE004549_8 (AE004549)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 274
Score = 87.4 bits (213), Expect = 2e-16
Identities = 68/236 (28%), Positives = 110/236 (45%), Gaps = 17/236 (7%)
Query: 38 IRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFP--FEIVAITIDEGIKGYRDKSV 95
I + MI+ G+++ V +SGGKDS +L +L L+K P FEIVA+ +D+ G+ +
Sbjct: 23 ITDFNMIEDGDKVMVCLSGGKDSYTMLDILLYLQKVAPIRFEIVAVNMDQKQPGFPE--- 79
Query: 96 EVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAE 155
V + +GVE+HI Y + E + E CS C RR L A+
Sbjct: 80 HVLPEYLKSIGVEYHIVEKDTY--SVVKEKIP------EGKTTCSLCSRLRRGTLYTFAD 131
Query: 156 ELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKE 215
E+ K+ALG + DD ++ F +N+ G + P + +G I+PL EK+
Sbjct: 132 EIGATKMALGHHRDDILETFFLNMFYGGTL---KAMPPKLLADDGRNVVIRPLAYCSEKD 188
Query: 216 IVLYAVLNNIE-VDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFP 270
I Y+ L + + C R +++ L E E + PG + R+ + P
Sbjct: 189 IEAYSQLKEFPIIPCNLCGSQENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVP 244
>sp|Q57184|YDAO_HAEIN HYPOTHETICAL PROTEIN HI1371.1 >gi|1574205|gb|AAC23019.1| (U32817)
conserved hypothetical protein [Haemophilus influenzae
Rd]
Length = 313
Score = 84.7 bits (206), Expect = 1e-15
Identities = 70/252 (27%), Positives = 117/252 (45%), Gaps = 18/252 (7%)
Query: 9 EAVYFAKYEGKY-YCHKHFNEMVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLL 67
E A+ E K Y + + V I + MI+ G+++ V +SGGKDS LL +L
Sbjct: 3 ELTQLAQQEKKQTYNFNKLQKRLRRNVGNAIADFGMIEDGDKVMVCLSGGKDSYTLLDIL 62
Query: 68 AKLRKRFP--FEIVAITIDEGIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDET 125
L++ P F+IVA+ +D+ G+ + V E +GV++ I + Y G ++
Sbjct: 63 LNLQQSAPIKFDIVAVNLDQKQPGFPE---HVLPEYLESIGVDYKIVQENTY-GIVKEKI 118
Query: 126 VEIMGARGERLGACSYCGVWRRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVA 185
E G+ CS C RR +L + A EL K+ALG + DD + +N+ G
Sbjct: 119 PE-----GKT--TCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLFLNMFYGGKI 171
Query: 186 RLGRTGPYYEVIHEGLVPRIKPLREVPEKEIVLYAVLNNIE-VDLSECPYAVEAFRAEIR 244
++ P + +G I+PL EK+I YA+ + + C R ++
Sbjct: 172 ---KSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPIIPCNLCGSQPNLQRQVVK 228
Query: 245 DWLNEMEERHPG 256
+ LN + ++PG
Sbjct: 229 EMLNTWDRQYPG 240
>pir||F81129 conserved hypothetical protein NMB1023 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226263|gb|AAF41423.1| (AE002453) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 319
Score = 84.3 bits (205), Expect = 2e-15
Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 17/236 (7%)
Query: 38 IRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFP--FEIVAITIDEGIKGYRDKSV 95
I + MI+ ++I V +SGGKDS LL +L +L+ P F++VA+ +D+ G+ +
Sbjct: 26 INDFNMIEPDDKIMVCLSGGKDSYALLDILRQLQASAPIDFQLVAVNLDQKQPGFPE--- 82
Query: 96 EVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLNKAAE 155
EV E +GV + I Y TV+ + G+ CS C RR +L + A+
Sbjct: 83 EVLPTYLESIGVPYKIVEEDTY------STVKRVLDEGKT--TCSLCSRLRRGILYRTAK 134
Query: 156 ELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREVPEKE 215
EL K+ALG + DD + +N+ G + P V G I+PL V EK+
Sbjct: 135 ELGCTKIALGHHRDDILATLFLNMFYGGKL---KAMPPKLVSDNGEHIVIRPLAYVKEKD 191
Query: 216 IVLYAVLNNIE-VDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFP 270
++ YA L + + C R I D L + ++R PG + + + P
Sbjct: 192 LIKYAELKQFPIIPCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVP 247
>sp|P76055|YDAO_ECOLI HYPOTHETICAL 35.6 KD PROTEIN IN DBPA-INTR INTERGENIC REGION
>gi|7430002|pir||C64884 ydaO protein - Escherichia coli
>gi|1787606|gb|AAC74426.1| (AE000232) orf, hypothetical
protein [Escherichia coli K12]
Length = 311
Score = 83.1 bits (202), Expect = 4e-15
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 17/240 (7%)
Query: 34 VKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKRFP--FEIVAITIDEGIKGYR 91
V I + MI++G+RI V +SGGKDS +L +L L++ P F +VA+ +D+ G+
Sbjct: 26 VGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFP 85
Query: 92 DKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLN 151
+ V E LGVE+ I Y G ++ E G+ CS C RR +L
Sbjct: 86 E---HVLPEYLEKLGVEYKIVEENTY-GIVKEKIPE-----GKT--TCSLCSRLRRGILY 134
Query: 152 KAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREV 211
+ A EL K+ALG + DD +Q +N+ G + P + +G I+PL
Sbjct: 135 RTATELGATKIALGHHRDDILQTLFLNMFYGGKM---KGMPPKLMSDDGKHIVIRPLAYC 191
Query: 212 PEKEIVLYAVLNNIE-VDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIFP 270
EK+I +A + + C R I D L + ++R+PG + + + P
Sbjct: 192 REKDIQRFADAKAFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVP 251
>pir||G82791 conserved hypothetical protein XF0569 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105431|gb|AAF83379.1|AE003903_15 (AE003903)
conserved hypothetical protein [Xylella fastidiosa]
Length = 312
Score = 80.4 bits (195), Expect = 3e-14
Identities = 72/241 (29%), Positives = 106/241 (43%), Gaps = 17/241 (7%)
Query: 33 KVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKR--FPFEIVAITIDEGIKGY 90
+V + I + MI+ ++I V +SGGKDS LL +L +LR + PFE+ A+ +D+ G+
Sbjct: 47 QVGQAIADFGMIEANDKIMVCLSGGKDSYTLLDMLLQLRAKAPVPFELTAVNLDQKQPGF 106
Query: 91 RDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLL 150
V +G+ HHI Y V + G+ L C+ C RR L
Sbjct: 107 ---PKHVLPEYLSSIGMPHHIIEQDTY------SVVTRVVPEGKTL--CALCSRMRRGAL 155
Query: 151 NKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLRE 210
AE K+ALG + DD V F MNL A+L P G I+PL
Sbjct: 156 YAYAETQGFTKIALGHHRDDMVATFFMNLFHH--AKLSGMPPKLR-SDNGKHVVIRPLAY 212
Query: 211 VPEKEIVLYAVLNNIE-VDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSYDKIF 269
V E +I+ YA + + C R ++ L E+ +PG Q+ R+ I
Sbjct: 213 VSETDIIAYADAREFPIIPCNLCGSQENLQRKQVGVILKAWEKEYPGRIEQIARALGNIR 272
Query: 270 P 270
P
Sbjct: 273 P 273
>pir||F64667 conserved hypothetical protein HP1182 - Helicobacter pylori
(strain 26695) >gi|2314342|gb|AAD08228.1| (AE000624)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 253
Score = 78.8 bits (191), Expect = 8e-14
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 34 VKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKR--FPFEIVAITIDEGIKGYR 91
V +T Y++I++G++I + +SGGKDS++L +LA+++K F F+ A+T+ G+
Sbjct: 13 VGKTNATYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGL---- 68
Query: 92 DKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLN 151
+ ++ + G+EH I I T++E R E+ CS+C RR L
Sbjct: 69 GEDLKWLSDLCQEQGIEHEI--IYTQIAATINE------KRREKSSFCSFCSRLRRGTLY 120
Query: 152 KAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREV 211
A E +K+A+ +LDD V+ F MN L P Y + LV I+PL +V
Sbjct: 121 SKALEEGYNKVAIAHHLDDAVESFFMNFTYN--GSLRSMPPIYRAENGLLV--IRPLIKV 176
Query: 212 PEKEIVLYAVLNNIEVDLS-ECPYAVEA------FRAEIRDWLNEMEERHP 255
E + + NI V CP R +++L EM+ HP
Sbjct: 177 REASSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHP 227
>pir||G71848 hypothetical protein jhp1108 - Helicobacter pylori (strain J99)
>gi|4155705|gb|AAD06688.1| (AE001538) putative
[Helicobacter pylori J99]
Length = 253
Score = 76.9 bits (186), Expect = 3e-13
Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 34 VKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKR--FPFEIVAITIDEGIKGYR 91
V +T Y++I++G++I + +SGGKDS++L +LA+++K F F+ A+T+ G+
Sbjct: 13 VGKTNATYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGL---- 68
Query: 92 DKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVWRRWLLN 151
++++ + G+EH I I T++E R E+ CS+C RR L
Sbjct: 69 GENLKWLSDLCQEQGIEHEI--IYTQIAATINE------KRREKSSFCSFCSRLRRGTLY 120
Query: 152 KAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPLREV 211
A +K+A+ +LDD V+ F MN L P Y + LV I+PL +V
Sbjct: 121 SKALGEGYNKVAIAHHLDDAVESFFMNFTYN--GSLRSMPPIYRAENGLLV--IRPLIKV 176
Query: 212 PEKEIVLYAVLNNIEVDLS-ECPYAVEA------FRAEIRDWLNEMEERHP 255
E + + NI V CP R +++L EM+ HP
Sbjct: 177 REASSIHFVTSQNIRVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHP 227
>gb|AAF36034.1| (AC024202) contains similarity to Escherichia ecoli hypothetical
protein (SP:P76055) [Caenorhabditis elegans]
Length = 1512
Score = 71.4 bits (172), Expect = 1e-11
Identities = 73/256 (28%), Positives = 114/256 (44%), Gaps = 36/256 (14%)
Query: 33 KVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKR------FPFEIVAITIDEG 86
KV I + +MI+ G+++ V +SGGKDS+ LLH+L ++R FE+ AIT+D G
Sbjct: 1273 KVTDIIHQLKMIRDGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFELGAITVDPG 1332
Query: 87 IKGYRDKS-VEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVW 145
Y + +E +R L ++ + Y +D IG + G R C++C
Sbjct: 1333 SAEYNPRPLIEYCRR----LNID-YFYEEQDIIG----AARKTPGLR----SICAFCSRM 1379
Query: 146 RRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRI 205
+R L AA+ + LA+G +LDD + F + + L Y +G + I
Sbjct: 1380 KRGRLAAAAQLHGWNVLAMGQHLDDLAESFFIAAFQN--GNLSTMKAQY-TTKDGALRVI 1436
Query: 206 KPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRSY 265
+PL V EK + +A + V CP N+ ERH QLL
Sbjct: 1437 RPLVMVREKALRNFAEDKKLPVVAENCPAC-----------FNQATERH--RVKQLLAQQ 1483
Query: 266 DKIFPLLAKTYAKEVK 281
+ IFP L + +K
Sbjct: 1484 ELIFPDLFNSLRSALK 1499
>pir||F81428 hypothetical protein Cj0118 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967612|emb|CAB72602.1|
(AL139074) hypothetical protein Cj0118 [Campylobacter
jejuni]
Length = 251
Score = 71.0 bits (171), Expect = 2e-11
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 31/236 (13%)
Query: 33 KVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKLRKR--FPFEIVAITIDEGIKGY 90
+V + K+ +IK G+R+ + +SGGKDS+ L HLL +++ F FE+ A+T+ G+
Sbjct: 11 QVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTLSYGM--- 67
Query: 91 RDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETV-EIMG-ARGERLGACSYCGVWRRW 148
+ + E G++H + LD + E+ G E CSY RR
Sbjct: 68 -GEDYSHLHAHCEEHGIKHSV----------LDSNIYEVSGDTIRENSSFCSYFSRMRRG 116
Query: 149 LLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVARLGRTGPYYEVIHEGLVPRIKPL 208
L A E +KLA+ +LDD + F MN + R P Y+ + + I+PL
Sbjct: 117 ALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALR--TLAPIYQ--SKRGITVIRPL 172
Query: 209 REVPEKEIVLYAVLNNIEV---------DLSECPYAVEAFRAEIRDWLNEMEERHP 255
V E+++ A N + V LSE R E + L +E+ HP
Sbjct: 173 IFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQLLANLEKDHP 228
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.416
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116023102
Number of Sequences: 2977
Number of extensions: 4687869
Number of successful extensions: 12945
Number of sequences better than 1.0e-10: 39
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 12826
Number of HSP's gapped (non-prelim): 41
length of query: 323
length of database: 189,106,746
effective HSP length: 54
effective length of query: 269
effective length of database: 156,788,448
effective search space: 42176092512
effective search space used: 42176092512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)