BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2031 (fum-2) DE:fumarase (fum-2)
         (165 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75166 fumarase (fum-2) PAB2031 - Pyrococcus abyssi (strain...   336  1e-91
pir||D71049 probable L(+)-tartrate dehydratase - Pyrococcus hori...   286  1e-76
gi|11498698 fumarase (fum-1) [Archaeoglobus fulgidus] >gi|743705...   169  2e-41
pir||B69122 fumarate hydratase, class I related protein - Methan...   150  9e-36
sp|Q58034|FUMB_METJA PUTATIVE FUMARATE HYDRATASE BETA SUBUNIT (F...   135  3e-31
pir||QQECRZ L(+)-tartrate dehydratase (EC 4.2.1.32), iron-depend...   125  3e-28
sp|P05851|TTDB_ECOLI L(+)-TARTRATE DEHYDRATASE BETA SUBUNIT (L-T...   117  6e-26
pir||E70445 C-terminal fumarate hydratase, class I - Aquifex aeo...   114  5e-25
emb|CAA10330.1| (AJ131242) fumarate hydratase B, beta subunit [W...   113  9e-25
emb|CAB40599.1| (AJ010139) fumarate hydratase [Bacillus cereus]       113  1e-24
dbj|BAB04613.1| (AP001510) fumarate hydratase class I (fumarase)...   113  1e-24
sp|Q04718|FUMA_BACST FUMARATE HYDRATASE CLASS I, AEROBIC (FUMARA...   111  4e-24
pir||C82216 probable fumarate hydratase, class I VC1304 [importe...    99  2e-20
pir||A81807 fumarate hydratase (EC 4.2.1.2) NMA1812 [imported] -...    99  3e-20
pir||A83105 probable fumarase PA4333 [imported] - Pseudomonas ae...    98  5e-20
pir||C81063 fumarate hydratase, class I NMB1613 [imported] - Nei...    98  6e-20
pir||G82630 fumarate hydratase XF1855 [imported] - Xylella fasti...    95  4e-19
pir||B72364 fumarate hydratase, C-terminal subunit - Thermotoga ...    93  2e-18

>pir||B75166 fumarase (fum-2) PAB2031 - Pyrococcus abyssi (strain Orsay)
           >gi|5457919|emb|CAB49409.1| (AJ248284) fumarase (fum-2)
           [Pyrococcus abyssi]
           Length = 165
           
 Score =  336 bits (852), Expect = 1e-91
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL 60
           MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL
Sbjct: 1   MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL 60

Query: 61  VKAGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLA 120
           VKAGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLA
Sbjct: 61  VKAGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLA 120

Query: 121 AKHLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
           AKHLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG
Sbjct: 121 AKHLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165


>pir||D71049 probable L(+)-tartrate dehydratase - Pyrococcus horikoshii
           >gi|3258113|dbj|BAA30796.1| (AP000006) 166aa long
           hypothetical L(+)-tartrate dehydratase [Pyrococcus
           horikoshii]
           Length = 166
           
 Score =  286 bits (723), Expect = 1e-76
 Identities = 136/162 (83%), Positives = 148/162 (90%)

Query: 3   VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLVK 62
           +KL+TPLS E++LKL VGD+VYLSG IYTARDLAHKRFLSQGFPFNPEG+VIYH GPLVK
Sbjct: 4   IKLKTPLSLEEILKLNVGDLVYLSGVIYTARDLAHKRFLSQGFPFNPEGAVIYHSGPLVK 63

Query: 63  AGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLAAK 122
             +IVSAGPTTS RMN YLDFLFSKG+RGIIGKGGMN E FKGKAVY AFPGGAGSLAAK
Sbjct: 64  DKRIVSAGPTTSTRMNPYLDFLFSKGIRGIIGKGGMNPEPFKGKAVYFAFPGGAGSLAAK 123

Query: 123 HLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSR 164
           HL +KNVYWE+LGM DAVWELEAK+LPLLVAID+KGRSLY R
Sbjct: 124 HLTIKNVYWEELGMTDAVWELEAKELPLLVAIDAKGRSLYDR 165


>gi|11498698 fumarase (fum-1) [Archaeoglobus fulgidus] >gi|7437054|pir||A69387
           fumarase (fum-1) homolog - Archaeoglobus fulgidus
           >gi|2649494|gb|AAB90148.1| (AE001028) fumarase (fum-1)
           [Archaeoglobus fulgidus]
           Length = 180
           
 Score =  169 bits (424), Expect = 2e-41
 Identities = 97/178 (54%), Positives = 119/178 (66%), Gaps = 14/178 (7%)

Query: 1   MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIY 55
           M  +LRTPL  + +LKLKVGDVVY++G I+TARD AH R L      +  PF+ +  V+Y
Sbjct: 3   MEYELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVY 62

Query: 56  HCGPLVKAG---KIVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMN---AEKFKGKAV 108
           HCGPLVK     ++VSAGPTTSARMN +   +  K    GIIGKGGM+    E  +GKA 
Sbjct: 63  HCGPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGKAA 122

Query: 109 YLAFPGGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGRSLYSR 164
           Y AF GGAG+LAA  + KVK V WEDLGM +AVW LE +   P +VAID+ G SLY R
Sbjct: 123 YFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCIVAIDAHGNSLYRR 180


>pir||B69122 fumarate hydratase, class I related protein - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2623044|gb|AAB86370.1| (AE000942) fumarate
           hydratase, class I related protein [Methanobacterium
           thermoautotrophicum]
           Length = 225
           
 Score =  150 bits (375), Expect = 9e-36
 Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 22/181 (12%)

Query: 1   MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL 60
           M +KL TPLS E+V +L+VGDVVY++G I+TARD AHKR L +G PF+ EGSVI+H GP+
Sbjct: 4   MEIKLETPLS-EEVTELRVGDVVYINGRIFTARDRAHKRILERGAPFDIEGSVIFHAGPI 62

Query: 61  VK---------------AGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMN----AE 101
           ++                 ++V  GPTTS RMN +   +   GVR +IGKGGM+    + 
Sbjct: 63  IRFNEEPNTTAESIRDPQAELVVVGPTTSGRMNPFQPEVLGLGVRAVIGKGGMDDRTGSA 122

Query: 102 KFKGKAVYLAFPGGAGSLAAKHLK-VKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGR 159
             +  AVYLA  GG  +L    +K ++ V+W DLG+ +A+WELE ++  PL+VA+DS GR
Sbjct: 123 LRRYGAVYLAAVGGCAALYGSAVKGIRAVHWLDLGVPEAIWELEVEEFGPLIVAMDSTGR 182

Query: 160 S 160
           S
Sbjct: 183 S 183


>sp|Q58034|FUMB_METJA PUTATIVE FUMARATE HYDRATASE BETA SUBUNIT (FUMARASE)
           >gi|2127926|pir||A64377 fumarate hydratase (EC 4.2.1.2)
           - Methanococcus jannaschii >gi|1591328|gb|AAB98612.1|
           (U67510) tartrate dehydratse, subunit beta (ttdB)
           [Methanococcus jannaschii]
           Length = 195
           
 Score =  135 bits (336), Expect = 3e-31
 Identities = 82/171 (47%), Positives = 109/171 (62%), Gaps = 17/171 (9%)

Query: 9   LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVK- 62
           L+ +DV KLKVGD+VYL+G IYTARD AH + +     ++  PF+   S+IYH GP++K 
Sbjct: 8   LTKKDVKKLKVGDIVYLNGKIYTARDEAHLKIIEMLKSNEKLPFDLNESIIYHAGPIMKK 67

Query: 63  ---AGKIVSAGPTTSARMNQY-LDFLFSKGVRGIIGKGGMNAEKFKG----KAVYLAFPG 114
              +   VS GPTTSARMN    +F+    +  I+GKGGM  E  K       VYLA PG
Sbjct: 68  VNDSWVCVSIGPTTSARMNDVEEEFIKLTNISAIVGKGGMKKELLKTFEDYGVVYLAAPG 127

Query: 115 GAGSLAAKHLK-VKNVYW-EDLGMADAVWELEAKDL-PLLVAIDSKGRSLY 162
           G  +L A  +K V NVY+ ++LGM +AVWELE  +  PL+VA+DS G S+Y
Sbjct: 128 GCAALLANSVKRVDNVYFLDELGMPEAVWELEVNNFGPLIVAMDSHGNSIY 178


>pir||QQECRZ L(+)-tartrate dehydratase (EC 4.2.1.32), iron-dependent, beta chain
           - Escherichia coli >gi|882585|gb|AAA89142.1| (U28379)
           tartrate dehydratse [Escherichia coli]
           >gi|1789443|gb|AAC76098.1| (AE000388) L-tartrate
           dehydratase, subunit B [Escherichia coli K12]
           Length = 201
           
 Score =  125 bits (311), Expect = 3e-28
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 13/170 (7%)

Query: 5   LRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRF--LSQGFPFNPEGSVIYHCGPLVK 62
           L TP+  ED+  ++VGDV+YL+GT+ T RD+ H+R   L +  P++  G  I+H GP+V+
Sbjct: 5   LTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVR 64

Query: 63  AG----KIVSAGPTTSARMNQY-LDFLFSKGVRGIIGKGGMNAEKFKG----KAVYLAFP 113
                 ++VS GPTTS RM  +  +F+   GV+ ++GKGGM     +G    KA+++ FP
Sbjct: 65  KNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFP 124

Query: 114 GGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGRSL 161
            G   LAA  + +++ V+W +LGM +++W    K+  PL+V+ID+ G +L
Sbjct: 125 AGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174


>sp|P05851|TTDB_ECOLI L(+)-TARTRATE DEHYDRATASE BETA SUBUNIT (L-TTD BETA)
           >gi|147766|gb|AAA72574.1| (M16194) [Escherichia coli
           rpsU gene encoding ribosomal protein S21, partial cds,
           with 5' flank encoding three unidentified proteins,
           complete cds..], gene products >gi|347085|gb|AAA03062.1|
           (L14781) tartrate dehydratase [Escherichia coli]
           >gi|225553|prf||1306285B ORF z2,rpsU upstream
           [Escherichia coli]
           Length = 201
           
 Score =  117 bits (291), Expect = 6e-26
 Identities = 62/170 (36%), Positives = 104/170 (60%), Gaps = 13/170 (7%)

Query: 5   LRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRF--LSQGFPFNPEGSVIYHCGPLVK 62
           L TP+  ED+  ++VGDV+YL+GT+ T RD+ H+R   L +  P++  G  I+H GP+V+
Sbjct: 5   LTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVR 64

Query: 63  AG----KIVSAGPTTSARMNQY-LDFLFSKGVRGIIGKGGMNAEKFKG----KAVYLAFP 113
                 ++VS GPTT     ++  +F+   GV+ ++GKGGM     +G    KA+++ FP
Sbjct: 65  KNGDKWEMVSVGPTTQYAYGKFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFP 124

Query: 114 GGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGRSL 161
            G   LAA  + +++ V+W +LGM +++W    K+  PL+ +ID+ G +L
Sbjct: 125 AGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIASIDTHGNNL 174


>pir||E70445 C-terminal fumarate hydratase, class I - Aquifex aeolicus
           >gi|2984001|gb|AAC07546.1| (AE000750) C-terminal
           fumarate hydratase, class I [Aquifex aeolicus]
           Length = 185
           
 Score =  114 bits (283), Expect = 5e-25
 Identities = 70/177 (39%), Positives = 107/177 (59%), Gaps = 13/177 (7%)

Query: 1   MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIY 55
           M  ++ TPL+ E V  L+ GD V ++G IYTARD AHKR +      +  P + +G +IY
Sbjct: 1   MEKRITTPLTDEVVKSLRAGDKVLITGYIYTARDAAHKRMVEAIQRGEKPPIDLKGQIIY 60

Query: 56  HCGPL-VKAGKIV-SAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAE----KFKGKAVY 109
           + GP   K G+++ SAGPTT+ RM++Y++ L   G++G+IGKG  + +      K KAVY
Sbjct: 61  YVGPTPPKPGQVIGSAGPTTAIRMDKYVEPLLKLGLKGMIGKGYRSPQVKELLKKYKAVY 120

Query: 110 LAFPGGAGSLAAKHLKVKN-VYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
            A  GG  +L  KH+K    + +EDLG  +A+  L  +D P++VA D+ G  ++  G
Sbjct: 121 FAAVGGVATLLQKHIKSSELIAYEDLG-TEAIRRLYVEDFPVIVANDAFGGDVFEEG 176


>emb|CAA10330.1| (AJ131242) fumarate hydratase B, beta subunit [Wolinella
           succinogenes]
           Length = 185
           
 Score =  113 bits (281), Expect = 9e-25
 Identities = 73/176 (41%), Positives = 101/176 (56%), Gaps = 13/176 (7%)

Query: 2   AVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRF---LSQG--FPFNPEGSVIYH 56
           A+K+  P   E   KLK GD V +SGTI  ARD AHK     L++G   P + +   IY+
Sbjct: 4   AIKITAPFDKETAKKLKAGDNVLISGTIIAARDAAHKALTEALARGETLPVDLQNETIYY 63

Query: 57  CGPL-VKAGKIV-SAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKF----KGKAVYL 110
            GP   K G+++ +AGPTTS RM++Y   +   GV G++GKG  + E      K  AVY+
Sbjct: 64  LGPSPAKPGEVIGAAGPTTSGRMDKYTPTILDLGVSGMVGKGYRSKEVIESIKKNGAVYM 123

Query: 111 AFPGGAGSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
              GGAG+L AK +K   V  + +LG  +AV  L  +D P +VAIDS+G + Y  G
Sbjct: 124 VAIGGAGALIAKSIKKYEVLAYPELG-PEAVARLTVEDFPAIVAIDSEGNNFYEMG 178


>emb|CAB40599.1| (AJ010139) fumarate hydratase [Bacillus cereus]
           Length = 269
           
 Score =  113 bits (280), Expect = 1e-24
 Identities = 65/172 (37%), Positives = 97/172 (55%), Gaps = 11/172 (6%)

Query: 3   VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLVK 62
           + L+ P++ E + +L+VGDVV ++G +YT RD  HK  +    P +  G +IYHCGP+V 
Sbjct: 80  IVLQAPITEEQIRELRVGDVVTINGMMYTGRDAIHKHLMDNDCPVDLNGQIIYHCGPVVV 139

Query: 63  AG-----KIVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMNAEKF----KGKAVYLAF 112
                  +I +AGPTTS R   Y   +  K G+R +IGKGGM A+      +   VYL  
Sbjct: 140 KDENDNWQIKAAGPTTSIREEPYQGDIMKKFGIRAVIGKGGMGAKTLAALEEHGGVYLNA 199

Query: 113 PGGAGSLAAKHLK-VKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYS 163
            GGA    A+ +K VK+V +   G+ +A+W L       +V +DS G SL++
Sbjct: 200 IGGAAQYYAECIKEVKDVDFLQFGIPEAMWHLRIDGFKAVVTMDSHGNSLHA 251


>dbj|BAB04613.1| (AP001510) fumarate hydratase class I (fumarase) [Bacillus
           halodurans]
           Length = 512
           
 Score =  113 bits (280), Expect = 1e-24
 Identities = 66/171 (38%), Positives = 96/171 (55%), Gaps = 11/171 (6%)

Query: 3   VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLV- 61
           V L  P++ E + +LKVGDVV ++G ++T RD  H   +    P + +G +IYHCGP++ 
Sbjct: 323 VVLEAPVTEEQIRELKVGDVVIINGMLHTGRDAIHHHLMDHDAPIDLDGQIIYHCGPVML 382

Query: 62  --KAGK--IVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMNAEKFKG----KAVYLAF 112
              AG+  + +AGPTTS R   Y   +  K G+R +IGKGGM  +  K       VYL  
Sbjct: 383 QDDAGEWHVKAAGPTTSIREEPYQGDIMKKFGIRAVIGKGGMGPKTLKALQEHGGVYLNA 442

Query: 113 PGGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLY 162
            GGA    A  + KVK V   + G+ +A+W LE +    +V +DS G SL+
Sbjct: 443 IGGAAQYYADCIKKVKGVDLMEFGIPEAMWHLEVEGFAAIVTMDSHGNSLH 493


>sp|Q04718|FUMA_BACST FUMARATE HYDRATASE CLASS I, AEROBIC (FUMARASE)
           >gi|477033|pir||A47692 fumarate hydratase (EC 4.2.1.2),
           iron-dependent - Bacillus stearothermophilus
           >gi|142944|gb|AAA72317.1| (L05611) fumarase [Bacillus
           stearothermophilus]
           Length = 514
           
 Score =  111 bits (276), Expect = 4e-24
 Identities = 63/171 (36%), Positives = 95/171 (54%), Gaps = 11/171 (6%)

Query: 3   VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLVK 62
           + L+ P++ E + +LKVGDVV ++G IYT RD  HK  +    P +  G +IYHCGP++ 
Sbjct: 324 ITLQAPITEEQIRELKVGDVVRINGIIYTGRDAIHKYLMDHDAPVDLNGQIIYHCGPVML 383

Query: 63  AG-----KIVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMNAEKFKG----KAVYLAF 112
                  ++ +AGPTTS R   Y   +  K G+R ++GKGGM  +  +       VYL  
Sbjct: 384 KDENGNWEVKAAGPTTSIREEPYQGDIMKKFGIRAVMGKGGMGQKTLQALKEHGGVYLNA 443

Query: 113 PGGAGSLAAKHLK-VKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLY 162
            GGA    A  ++ V+ V   + G+ +A+W L  KD   +V +DS G SL+
Sbjct: 444 IGGAAQYYADCIEAVEGVDLLEFGIPEAMWHLRVKDFTAVVTMDSHGNSLH 494


>pir||C82216 probable fumarate hydratase, class I VC1304 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9655793|gb|AAF94463.1| (AE004210) fumarate
           hydratase, class I, putative [Vibrio cholerae]
           Length = 505
           
 Score = 99.5 bits (244), Expect = 2e-20
 Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 16/172 (9%)

Query: 9   LSPEDVLKLKVGDVVYLSGTIYTARDLAHKR---FLSQGFPF----NPEGSVIYHCGPLV 61
           ++ E++   K G+ V LSG I T RD AHKR    L +G       + +   IY+ GP+ 
Sbjct: 322 ITREEIQTWKTGETVLLSGKILTGRDAAHKRIQTMLQKGEKLPDSVDLKDKFIYYVGPVD 381

Query: 62  KAGKIV--SAGPTTSARMNQYLDFLFSK-GVRGIIGK---GGMNAEKF-KGKAVYLAFPG 114
             G  V   AGPTTS RM+++ D +  + GV G+IGK   G    E   K KAVYL   G
Sbjct: 382 AVGDEVVGPAGPTTSTRMDKFTDMMLEEVGVMGMIGKAERGPATVESIKKHKAVYLMAVG 441

Query: 115 GAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
           GA  L AK + K + V +EDLGM +A++E E +D+P+ VA+DS G + +  G
Sbjct: 442 GAAYLVAKAIKKARVVAFEDLGM-EAIYEFEVEDMPVTVAVDSTGANAHQIG 492


>pir||A81807 fumarate hydratase (EC 4.2.1.2) NMA1812 [imported] - Neisseria
           meningitidis (group A strain Z2491)
           >gi|7380451|emb|CAB85037.1| (AL162757) fumarate
           hydratase [Neisseria meningitidis Z2491]
           Length = 546
           
 Score = 99.1 bits (243), Expect = 3e-20
 Identities = 65/168 (38%), Positives = 95/168 (55%), Gaps = 14/168 (8%)

Query: 9   LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVKA 63
           L+ E+V   K GDV+ L+G I T RD AHKR +      +  P +    +IY+ GP+   
Sbjct: 363 LTKEEVASWKTGDVLLLNGKILTGRDAAHKRLVDMLDKGEELPVDFTNRLIYYVGPVDPV 422

Query: 64  GK--IVSAGPTTSARMNQYL-DFLFSKGVRGIIGKGGMNAEKFK----GKAVYLAFPGGA 116
           G   +  AGPTT+ RM+++    L    + G+IGK    A   +     KAVYL   GGA
Sbjct: 423 GDEIVGPAGPTTATRMDKFTRQMLEQTDLLGMIGKSERGAATCEAIADNKAVYLMAVGGA 482

Query: 117 GSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYS 163
             L AK +K   V  + +LGM +A++E E KD+P+ VA+DSKG S+++
Sbjct: 483 AYLVAKAIKSSKVLAFPELGM-EAIYEFEVKDMPVTVAVDSKGESIHA 529


>pir||A83105 probable fumarase PA4333 [imported] - Pseudomonas aeruginosa
           (strain PAO1) >gi|9950558|gb|AAG07721.1|AE004849_8
           (AE004849) probable fumarase [Pseudomonas aeruginosa]
           Length = 507
           
 Score = 98.3 bits (241), Expect = 5e-20
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 14/170 (8%)

Query: 9   LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVKA 63
           ++PE+V   K G+ + L+G + T RD AHKR +      +  P + +G  IY+ GP+   
Sbjct: 322 ITPEEVQSWKPGETLLLNGKMLTGRDAAHKRMVDMLNKGETLPVDLKGRFIYYVGPVDPV 381

Query: 64  GKIV--SAGPTTSARMNQYL-DFLFSKGVRGIIGK---GGMNAEKFK-GKAVYLAFPGGA 116
           G  V   AGPTT+ RM+++    L   G+ G+IGK   G +  E  K  KAVYL   GGA
Sbjct: 382 GDEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERGPIAIEAIKDNKAVYLMAVGGA 441

Query: 117 GSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
             L A+ +K   V  + +LGM +A++E E KD+P+ VA+D+ G S++  G
Sbjct: 442 AYLVAQAIKKSKVLAFAELGM-EAIYEFEVKDMPVTVAVDTNGESVHITG 490


>pir||C81063 fumarate hydratase, class I NMB1613 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7226863|gb|AAF41965.1| (AE002511) fumarate
           hydratase, class I [Neisseria meningitidis MC58]
           Length = 507
           
 Score = 97.9 bits (240), Expect = 6e-20
 Identities = 67/168 (39%), Positives = 95/168 (55%), Gaps = 14/168 (8%)

Query: 9   LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVKA 63
           L+ E+V   K GDV+ L+G I T RD AHKR +      +  P +    +IY+ GP+   
Sbjct: 324 LTKEEVASWKTGDVLLLNGKILTGRDAAHKRLVDMLNKGEELPVDFTNRLIYYVGPVDPV 383

Query: 64  GKIV--SAGPTTSARMNQYL-DFLFSKGVRGIIGK---GGMNAEKF-KGKAVYLAFPGGA 116
           G  V   AGPTT+ RM+++    L    + G+IGK   G    E     KAVYL   GGA
Sbjct: 384 GDEVVGPAGPTTATRMDKFTRQMLEQTDLLGMIGKSERGVATCEAIADNKAVYLMAVGGA 443

Query: 117 GSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYS 163
             L AK +K   V  + +LGM +A++E E KD+P+ VA+DSKG S+++
Sbjct: 444 AYLVAKAIKSSKVLAFPELGM-EAIYEFEVKDMPVTVAVDSKGESIHA 490


>pir||G82630 fumarate hydratase XF1855 [imported] - Xylella fastidiosa  (strain
           9a5c) >gi|9106941|gb|AAF84661.1|AE004006_9 (AE004006)
           fumarate hydratase [Xylella fastidiosa]
           Length = 551
           
 Score = 95.2 bits (233), Expect = 4e-19
 Identities = 63/176 (35%), Positives = 99/176 (55%), Gaps = 15/176 (8%)

Query: 3   VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHC 57
           V L T ++ ++V + K G+V+ LSG + T RD AHKR +      +  P +     IY+ 
Sbjct: 362 VNLNT-MTRDEVAQFKPGEVLLLSGKLLTGRDAAHKRIVEMLNKGETLPVDFTNRFIYYV 420

Query: 58  GPL--VKAGKIVSAGPTTSARMNQYL-DFLFSKGVRGIIGKGGMN----AEKFKGKAVYL 110
           GP+  V+   +  AGPTT+ RM+++    L   G+ G++GK        A     KAVYL
Sbjct: 421 GPVDPVRDEVVGPAGPTTATRMDKFTRQMLEQAGLLGMVGKAERGPTAIAAIRDNKAVYL 480

Query: 111 AFPGGAGSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
              GGA  L +K +K   +  +EDLGM +A++E E K++P+ VA+D  G S+++ G
Sbjct: 481 MAVGGAAYLVSKAIKTSRILAFEDLGM-EAIYEFEVKEMPVTVAVDCNGESIHTTG 535


>pir||B72364 fumarate hydratase, C-terminal subunit - Thermotoga maritima
           (strain MSB8) >gi|4981055|gb|AAD35626.1|AE001729_6
           (AE001729) fumarate hydratase, C-terminal subunit
           [Thermotoga maritima]
           Length = 164
           
 Score = 93.2 bits (228), Expect = 2e-18
 Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 13/158 (8%)

Query: 17  LKVGDVVYLSGTIYTARDLAHKRFLS-----QGFPFNPEGSVIYHCGPL-VKAGKIVSA- 69
           LK G  +  SG +   RD A +R        +  P +  G ++++ GP    +GK V A 
Sbjct: 6   LKAGQEIRYSGKLIVMRDQAQRRLKEIVDRGEEPPVDLRGQIVFYAGPAKTPSGKPVGAI 65

Query: 70  GPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKF----KGKAVYLAFPGGAGSLAAKHLK 125
           GPTTSARM+ YL+ LF  G    IGKG  + +      K K VY   P G  +  +K +K
Sbjct: 66  GPTTSARMDDYLEMLFKLGAIATIGKGKRSKKAIEACKKWKRVYFVTPSGTAAALSKRVK 125

Query: 126 VKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLY 162
              V  +EDLG  +A++E+E +D PL+VAIDS G +++
Sbjct: 126 KSRVLAFEDLG-PEAIYEIEVEDFPLIVAIDSNGNTIF 162


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65877817
Number of Sequences: 2977
Number of extensions: 2777882
Number of successful extensions: 5510
Number of sequences better than 1.0e-10: 18
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5452
Number of HSP's gapped (non-prelim): 18
length of query: 165
length of database: 189,106,746
effective HSP length: 52
effective length of query: 113
effective length of database: 157,985,422
effective search space: 17852352686
effective search space used: 17852352686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)