BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2031 (fum-2) DE:fumarase (fum-2)
(165 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75166 fumarase (fum-2) PAB2031 - Pyrococcus abyssi (strain... 336 1e-91
pir||D71049 probable L(+)-tartrate dehydratase - Pyrococcus hori... 286 1e-76
gi|11498698 fumarase (fum-1) [Archaeoglobus fulgidus] >gi|743705... 169 2e-41
pir||B69122 fumarate hydratase, class I related protein - Methan... 150 9e-36
sp|Q58034|FUMB_METJA PUTATIVE FUMARATE HYDRATASE BETA SUBUNIT (F... 135 3e-31
pir||QQECRZ L(+)-tartrate dehydratase (EC 4.2.1.32), iron-depend... 125 3e-28
sp|P05851|TTDB_ECOLI L(+)-TARTRATE DEHYDRATASE BETA SUBUNIT (L-T... 117 6e-26
pir||E70445 C-terminal fumarate hydratase, class I - Aquifex aeo... 114 5e-25
emb|CAA10330.1| (AJ131242) fumarate hydratase B, beta subunit [W... 113 9e-25
emb|CAB40599.1| (AJ010139) fumarate hydratase [Bacillus cereus] 113 1e-24
dbj|BAB04613.1| (AP001510) fumarate hydratase class I (fumarase)... 113 1e-24
sp|Q04718|FUMA_BACST FUMARATE HYDRATASE CLASS I, AEROBIC (FUMARA... 111 4e-24
pir||C82216 probable fumarate hydratase, class I VC1304 [importe... 99 2e-20
pir||A81807 fumarate hydratase (EC 4.2.1.2) NMA1812 [imported] -... 99 3e-20
pir||A83105 probable fumarase PA4333 [imported] - Pseudomonas ae... 98 5e-20
pir||C81063 fumarate hydratase, class I NMB1613 [imported] - Nei... 98 6e-20
pir||G82630 fumarate hydratase XF1855 [imported] - Xylella fasti... 95 4e-19
pir||B72364 fumarate hydratase, C-terminal subunit - Thermotoga ... 93 2e-18
>pir||B75166 fumarase (fum-2) PAB2031 - Pyrococcus abyssi (strain Orsay)
>gi|5457919|emb|CAB49409.1| (AJ248284) fumarase (fum-2)
[Pyrococcus abyssi]
Length = 165
Score = 336 bits (852), Expect = 1e-91
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL 60
MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL
Sbjct: 1 MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL 60
Query: 61 VKAGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLA 120
VKAGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLA
Sbjct: 61 VKAGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLA 120
Query: 121 AKHLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
AKHLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG
Sbjct: 121 AKHLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
>pir||D71049 probable L(+)-tartrate dehydratase - Pyrococcus horikoshii
>gi|3258113|dbj|BAA30796.1| (AP000006) 166aa long
hypothetical L(+)-tartrate dehydratase [Pyrococcus
horikoshii]
Length = 166
Score = 286 bits (723), Expect = 1e-76
Identities = 136/162 (83%), Positives = 148/162 (90%)
Query: 3 VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLVK 62
+KL+TPLS E++LKL VGD+VYLSG IYTARDLAHKRFLSQGFPFNPEG+VIYH GPLVK
Sbjct: 4 IKLKTPLSLEEILKLNVGDLVYLSGVIYTARDLAHKRFLSQGFPFNPEGAVIYHSGPLVK 63
Query: 63 AGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKFKGKAVYLAFPGGAGSLAAK 122
+IVSAGPTTS RMN YLDFLFSKG+RGIIGKGGMN E FKGKAVY AFPGGAGSLAAK
Sbjct: 64 DKRIVSAGPTTSTRMNPYLDFLFSKGIRGIIGKGGMNPEPFKGKAVYFAFPGGAGSLAAK 123
Query: 123 HLKVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSR 164
HL +KNVYWE+LGM DAVWELEAK+LPLLVAID+KGRSLY R
Sbjct: 124 HLTIKNVYWEELGMTDAVWELEAKELPLLVAIDAKGRSLYDR 165
>gi|11498698 fumarase (fum-1) [Archaeoglobus fulgidus] >gi|7437054|pir||A69387
fumarase (fum-1) homolog - Archaeoglobus fulgidus
>gi|2649494|gb|AAB90148.1| (AE001028) fumarase (fum-1)
[Archaeoglobus fulgidus]
Length = 180
Score = 169 bits (424), Expect = 2e-41
Identities = 97/178 (54%), Positives = 119/178 (66%), Gaps = 14/178 (7%)
Query: 1 MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIY 55
M +LRTPL + +LKLKVGDVVY++G I+TARD AH R L + PF+ + V+Y
Sbjct: 3 MEYELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVY 62
Query: 56 HCGPLVKAG---KIVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMN---AEKFKGKAV 108
HCGPLVK ++VSAGPTTSARMN + + K GIIGKGGM+ E +GKA
Sbjct: 63 HCGPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGKAA 122
Query: 109 YLAFPGGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGRSLYSR 164
Y AF GGAG+LAA + KVK V WEDLGM +AVW LE + P +VAID+ G SLY R
Sbjct: 123 YFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCIVAIDAHGNSLYRR 180
>pir||B69122 fumarate hydratase, class I related protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2623044|gb|AAB86370.1| (AE000942) fumarate
hydratase, class I related protein [Methanobacterium
thermoautotrophicum]
Length = 225
Score = 150 bits (375), Expect = 9e-36
Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 22/181 (12%)
Query: 1 MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPL 60
M +KL TPLS E+V +L+VGDVVY++G I+TARD AHKR L +G PF+ EGSVI+H GP+
Sbjct: 4 MEIKLETPLS-EEVTELRVGDVVYINGRIFTARDRAHKRILERGAPFDIEGSVIFHAGPI 62
Query: 61 VK---------------AGKIVSAGPTTSARMNQYLDFLFSKGVRGIIGKGGMN----AE 101
++ ++V GPTTS RMN + + GVR +IGKGGM+ +
Sbjct: 63 IRFNEEPNTTAESIRDPQAELVVVGPTTSGRMNPFQPEVLGLGVRAVIGKGGMDDRTGSA 122
Query: 102 KFKGKAVYLAFPGGAGSLAAKHLK-VKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGR 159
+ AVYLA GG +L +K ++ V+W DLG+ +A+WELE ++ PL+VA+DS GR
Sbjct: 123 LRRYGAVYLAAVGGCAALYGSAVKGIRAVHWLDLGVPEAIWELEVEEFGPLIVAMDSTGR 182
Query: 160 S 160
S
Sbjct: 183 S 183
>sp|Q58034|FUMB_METJA PUTATIVE FUMARATE HYDRATASE BETA SUBUNIT (FUMARASE)
>gi|2127926|pir||A64377 fumarate hydratase (EC 4.2.1.2)
- Methanococcus jannaschii >gi|1591328|gb|AAB98612.1|
(U67510) tartrate dehydratse, subunit beta (ttdB)
[Methanococcus jannaschii]
Length = 195
Score = 135 bits (336), Expect = 3e-31
Identities = 82/171 (47%), Positives = 109/171 (62%), Gaps = 17/171 (9%)
Query: 9 LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVK- 62
L+ +DV KLKVGD+VYL+G IYTARD AH + + ++ PF+ S+IYH GP++K
Sbjct: 8 LTKKDVKKLKVGDIVYLNGKIYTARDEAHLKIIEMLKSNEKLPFDLNESIIYHAGPIMKK 67
Query: 63 ---AGKIVSAGPTTSARMNQY-LDFLFSKGVRGIIGKGGMNAEKFKG----KAVYLAFPG 114
+ VS GPTTSARMN +F+ + I+GKGGM E K VYLA PG
Sbjct: 68 VNDSWVCVSIGPTTSARMNDVEEEFIKLTNISAIVGKGGMKKELLKTFEDYGVVYLAAPG 127
Query: 115 GAGSLAAKHLK-VKNVYW-EDLGMADAVWELEAKDL-PLLVAIDSKGRSLY 162
G +L A +K V NVY+ ++LGM +AVWELE + PL+VA+DS G S+Y
Sbjct: 128 GCAALLANSVKRVDNVYFLDELGMPEAVWELEVNNFGPLIVAMDSHGNSIY 178
>pir||QQECRZ L(+)-tartrate dehydratase (EC 4.2.1.32), iron-dependent, beta chain
- Escherichia coli >gi|882585|gb|AAA89142.1| (U28379)
tartrate dehydratse [Escherichia coli]
>gi|1789443|gb|AAC76098.1| (AE000388) L-tartrate
dehydratase, subunit B [Escherichia coli K12]
Length = 201
Score = 125 bits (311), Expect = 3e-28
Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 13/170 (7%)
Query: 5 LRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRF--LSQGFPFNPEGSVIYHCGPLVK 62
L TP+ ED+ ++VGDV+YL+GT+ T RD+ H+R L + P++ G I+H GP+V+
Sbjct: 5 LTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVR 64
Query: 63 AG----KIVSAGPTTSARMNQY-LDFLFSKGVRGIIGKGGMNAEKFKG----KAVYLAFP 113
++VS GPTTS RM + +F+ GV+ ++GKGGM +G KA+++ FP
Sbjct: 65 KNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFP 124
Query: 114 GGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGRSL 161
G LAA + +++ V+W +LGM +++W K+ PL+V+ID+ G +L
Sbjct: 125 AGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|P05851|TTDB_ECOLI L(+)-TARTRATE DEHYDRATASE BETA SUBUNIT (L-TTD BETA)
>gi|147766|gb|AAA72574.1| (M16194) [Escherichia coli
rpsU gene encoding ribosomal protein S21, partial cds,
with 5' flank encoding three unidentified proteins,
complete cds..], gene products >gi|347085|gb|AAA03062.1|
(L14781) tartrate dehydratase [Escherichia coli]
>gi|225553|prf||1306285B ORF z2,rpsU upstream
[Escherichia coli]
Length = 201
Score = 117 bits (291), Expect = 6e-26
Identities = 62/170 (36%), Positives = 104/170 (60%), Gaps = 13/170 (7%)
Query: 5 LRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRF--LSQGFPFNPEGSVIYHCGPLVK 62
L TP+ ED+ ++VGDV+YL+GT+ T RD+ H+R L + P++ G I+H GP+V+
Sbjct: 5 LTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVR 64
Query: 63 AG----KIVSAGPTTSARMNQY-LDFLFSKGVRGIIGKGGMNAEKFKG----KAVYLAFP 113
++VS GPTT ++ +F+ GV+ ++GKGGM +G KA+++ FP
Sbjct: 65 KNGDKWEMVSVGPTTQYAYGKFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFP 124
Query: 114 GGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDL-PLLVAIDSKGRSL 161
G LAA + +++ V+W +LGM +++W K+ PL+ +ID+ G +L
Sbjct: 125 AGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIASIDTHGNNL 174
>pir||E70445 C-terminal fumarate hydratase, class I - Aquifex aeolicus
>gi|2984001|gb|AAC07546.1| (AE000750) C-terminal
fumarate hydratase, class I [Aquifex aeolicus]
Length = 185
Score = 114 bits (283), Expect = 5e-25
Identities = 70/177 (39%), Positives = 107/177 (59%), Gaps = 13/177 (7%)
Query: 1 MAVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIY 55
M ++ TPL+ E V L+ GD V ++G IYTARD AHKR + + P + +G +IY
Sbjct: 1 MEKRITTPLTDEVVKSLRAGDKVLITGYIYTARDAAHKRMVEAIQRGEKPPIDLKGQIIY 60
Query: 56 HCGPL-VKAGKIV-SAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAE----KFKGKAVY 109
+ GP K G+++ SAGPTT+ RM++Y++ L G++G+IGKG + + K KAVY
Sbjct: 61 YVGPTPPKPGQVIGSAGPTTAIRMDKYVEPLLKLGLKGMIGKGYRSPQVKELLKKYKAVY 120
Query: 110 LAFPGGAGSLAAKHLKVKN-VYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
A GG +L KH+K + +EDLG +A+ L +D P++VA D+ G ++ G
Sbjct: 121 FAAVGGVATLLQKHIKSSELIAYEDLG-TEAIRRLYVEDFPVIVANDAFGGDVFEEG 176
>emb|CAA10330.1| (AJ131242) fumarate hydratase B, beta subunit [Wolinella
succinogenes]
Length = 185
Score = 113 bits (281), Expect = 9e-25
Identities = 73/176 (41%), Positives = 101/176 (56%), Gaps = 13/176 (7%)
Query: 2 AVKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRF---LSQG--FPFNPEGSVIYH 56
A+K+ P E KLK GD V +SGTI ARD AHK L++G P + + IY+
Sbjct: 4 AIKITAPFDKETAKKLKAGDNVLISGTIIAARDAAHKALTEALARGETLPVDLQNETIYY 63
Query: 57 CGPL-VKAGKIV-SAGPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKF----KGKAVYL 110
GP K G+++ +AGPTTS RM++Y + GV G++GKG + E K AVY+
Sbjct: 64 LGPSPAKPGEVIGAAGPTTSGRMDKYTPTILDLGVSGMVGKGYRSKEVIESIKKNGAVYM 123
Query: 111 AFPGGAGSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
GGAG+L AK +K V + +LG +AV L +D P +VAIDS+G + Y G
Sbjct: 124 VAIGGAGALIAKSIKKYEVLAYPELG-PEAVARLTVEDFPAIVAIDSEGNNFYEMG 178
>emb|CAB40599.1| (AJ010139) fumarate hydratase [Bacillus cereus]
Length = 269
Score = 113 bits (280), Expect = 1e-24
Identities = 65/172 (37%), Positives = 97/172 (55%), Gaps = 11/172 (6%)
Query: 3 VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLVK 62
+ L+ P++ E + +L+VGDVV ++G +YT RD HK + P + G +IYHCGP+V
Sbjct: 80 IVLQAPITEEQIRELRVGDVVTINGMMYTGRDAIHKHLMDNDCPVDLNGQIIYHCGPVVV 139
Query: 63 AG-----KIVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMNAEKF----KGKAVYLAF 112
+I +AGPTTS R Y + K G+R +IGKGGM A+ + VYL
Sbjct: 140 KDENDNWQIKAAGPTTSIREEPYQGDIMKKFGIRAVIGKGGMGAKTLAALEEHGGVYLNA 199
Query: 113 PGGAGSLAAKHLK-VKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYS 163
GGA A+ +K VK+V + G+ +A+W L +V +DS G SL++
Sbjct: 200 IGGAAQYYAECIKEVKDVDFLQFGIPEAMWHLRIDGFKAVVTMDSHGNSLHA 251
>dbj|BAB04613.1| (AP001510) fumarate hydratase class I (fumarase) [Bacillus
halodurans]
Length = 512
Score = 113 bits (280), Expect = 1e-24
Identities = 66/171 (38%), Positives = 96/171 (55%), Gaps = 11/171 (6%)
Query: 3 VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLV- 61
V L P++ E + +LKVGDVV ++G ++T RD H + P + +G +IYHCGP++
Sbjct: 323 VVLEAPVTEEQIRELKVGDVVIINGMLHTGRDAIHHHLMDHDAPIDLDGQIIYHCGPVML 382
Query: 62 --KAGK--IVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMNAEKFKG----KAVYLAF 112
AG+ + +AGPTTS R Y + K G+R +IGKGGM + K VYL
Sbjct: 383 QDDAGEWHVKAAGPTTSIREEPYQGDIMKKFGIRAVIGKGGMGPKTLKALQEHGGVYLNA 442
Query: 113 PGGAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLY 162
GGA A + KVK V + G+ +A+W LE + +V +DS G SL+
Sbjct: 443 IGGAAQYYADCIKKVKGVDLMEFGIPEAMWHLEVEGFAAIVTMDSHGNSLH 493
>sp|Q04718|FUMA_BACST FUMARATE HYDRATASE CLASS I, AEROBIC (FUMARASE)
>gi|477033|pir||A47692 fumarate hydratase (EC 4.2.1.2),
iron-dependent - Bacillus stearothermophilus
>gi|142944|gb|AAA72317.1| (L05611) fumarase [Bacillus
stearothermophilus]
Length = 514
Score = 111 bits (276), Expect = 4e-24
Identities = 63/171 (36%), Positives = 95/171 (54%), Gaps = 11/171 (6%)
Query: 3 VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFLSQGFPFNPEGSVIYHCGPLVK 62
+ L+ P++ E + +LKVGDVV ++G IYT RD HK + P + G +IYHCGP++
Sbjct: 324 ITLQAPITEEQIRELKVGDVVRINGIIYTGRDAIHKYLMDHDAPVDLNGQIIYHCGPVML 383
Query: 63 AG-----KIVSAGPTTSARMNQYLDFLFSK-GVRGIIGKGGMNAEKFKG----KAVYLAF 112
++ +AGPTTS R Y + K G+R ++GKGGM + + VYL
Sbjct: 384 KDENGNWEVKAAGPTTSIREEPYQGDIMKKFGIRAVMGKGGMGQKTLQALKEHGGVYLNA 443
Query: 113 PGGAGSLAAKHLK-VKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLY 162
GGA A ++ V+ V + G+ +A+W L KD +V +DS G SL+
Sbjct: 444 IGGAAQYYADCIEAVEGVDLLEFGIPEAMWHLRVKDFTAVVTMDSHGNSLH 494
>pir||C82216 probable fumarate hydratase, class I VC1304 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655793|gb|AAF94463.1| (AE004210) fumarate
hydratase, class I, putative [Vibrio cholerae]
Length = 505
Score = 99.5 bits (244), Expect = 2e-20
Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 16/172 (9%)
Query: 9 LSPEDVLKLKVGDVVYLSGTIYTARDLAHKR---FLSQGFPF----NPEGSVIYHCGPLV 61
++ E++ K G+ V LSG I T RD AHKR L +G + + IY+ GP+
Sbjct: 322 ITREEIQTWKTGETVLLSGKILTGRDAAHKRIQTMLQKGEKLPDSVDLKDKFIYYVGPVD 381
Query: 62 KAGKIV--SAGPTTSARMNQYLDFLFSK-GVRGIIGK---GGMNAEKF-KGKAVYLAFPG 114
G V AGPTTS RM+++ D + + GV G+IGK G E K KAVYL G
Sbjct: 382 AVGDEVVGPAGPTTSTRMDKFTDMMLEEVGVMGMIGKAERGPATVESIKKHKAVYLMAVG 441
Query: 115 GAGSLAAKHL-KVKNVYWEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
GA L AK + K + V +EDLGM +A++E E +D+P+ VA+DS G + + G
Sbjct: 442 GAAYLVAKAIKKARVVAFEDLGM-EAIYEFEVEDMPVTVAVDSTGANAHQIG 492
>pir||A81807 fumarate hydratase (EC 4.2.1.2) NMA1812 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380451|emb|CAB85037.1| (AL162757) fumarate
hydratase [Neisseria meningitidis Z2491]
Length = 546
Score = 99.1 bits (243), Expect = 3e-20
Identities = 65/168 (38%), Positives = 95/168 (55%), Gaps = 14/168 (8%)
Query: 9 LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVKA 63
L+ E+V K GDV+ L+G I T RD AHKR + + P + +IY+ GP+
Sbjct: 363 LTKEEVASWKTGDVLLLNGKILTGRDAAHKRLVDMLDKGEELPVDFTNRLIYYVGPVDPV 422
Query: 64 GK--IVSAGPTTSARMNQYL-DFLFSKGVRGIIGKGGMNAEKFK----GKAVYLAFPGGA 116
G + AGPTT+ RM+++ L + G+IGK A + KAVYL GGA
Sbjct: 423 GDEIVGPAGPTTATRMDKFTRQMLEQTDLLGMIGKSERGAATCEAIADNKAVYLMAVGGA 482
Query: 117 GSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYS 163
L AK +K V + +LGM +A++E E KD+P+ VA+DSKG S+++
Sbjct: 483 AYLVAKAIKSSKVLAFPELGM-EAIYEFEVKDMPVTVAVDSKGESIHA 529
>pir||A83105 probable fumarase PA4333 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950558|gb|AAG07721.1|AE004849_8
(AE004849) probable fumarase [Pseudomonas aeruginosa]
Length = 507
Score = 98.3 bits (241), Expect = 5e-20
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 14/170 (8%)
Query: 9 LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVKA 63
++PE+V K G+ + L+G + T RD AHKR + + P + +G IY+ GP+
Sbjct: 322 ITPEEVQSWKPGETLLLNGKMLTGRDAAHKRMVDMLNKGETLPVDLKGRFIYYVGPVDPV 381
Query: 64 GKIV--SAGPTTSARMNQYL-DFLFSKGVRGIIGK---GGMNAEKFK-GKAVYLAFPGGA 116
G V AGPTT+ RM+++ L G+ G+IGK G + E K KAVYL GGA
Sbjct: 382 GDEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERGPIAIEAIKDNKAVYLMAVGGA 441
Query: 117 GSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
L A+ +K V + +LGM +A++E E KD+P+ VA+D+ G S++ G
Sbjct: 442 AYLVAQAIKKSKVLAFAELGM-EAIYEFEVKDMPVTVAVDTNGESVHITG 490
>pir||C81063 fumarate hydratase, class I NMB1613 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226863|gb|AAF41965.1| (AE002511) fumarate
hydratase, class I [Neisseria meningitidis MC58]
Length = 507
Score = 97.9 bits (240), Expect = 6e-20
Identities = 67/168 (39%), Positives = 95/168 (55%), Gaps = 14/168 (8%)
Query: 9 LSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHCGPLVKA 63
L+ E+V K GDV+ L+G I T RD AHKR + + P + +IY+ GP+
Sbjct: 324 LTKEEVASWKTGDVLLLNGKILTGRDAAHKRLVDMLNKGEELPVDFTNRLIYYVGPVDPV 383
Query: 64 GKIV--SAGPTTSARMNQYL-DFLFSKGVRGIIGK---GGMNAEKF-KGKAVYLAFPGGA 116
G V AGPTT+ RM+++ L + G+IGK G E KAVYL GGA
Sbjct: 384 GDEVVGPAGPTTATRMDKFTRQMLEQTDLLGMIGKSERGVATCEAIADNKAVYLMAVGGA 443
Query: 117 GSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYS 163
L AK +K V + +LGM +A++E E KD+P+ VA+DSKG S+++
Sbjct: 444 AYLVAKAIKSSKVLAFPELGM-EAIYEFEVKDMPVTVAVDSKGESIHA 490
>pir||G82630 fumarate hydratase XF1855 [imported] - Xylella fastidiosa (strain
9a5c) >gi|9106941|gb|AAF84661.1|AE004006_9 (AE004006)
fumarate hydratase [Xylella fastidiosa]
Length = 551
Score = 95.2 bits (233), Expect = 4e-19
Identities = 63/176 (35%), Positives = 99/176 (55%), Gaps = 15/176 (8%)
Query: 3 VKLRTPLSPEDVLKLKVGDVVYLSGTIYTARDLAHKRFL-----SQGFPFNPEGSVIYHC 57
V L T ++ ++V + K G+V+ LSG + T RD AHKR + + P + IY+
Sbjct: 362 VNLNT-MTRDEVAQFKPGEVLLLSGKLLTGRDAAHKRIVEMLNKGETLPVDFTNRFIYYV 420
Query: 58 GPL--VKAGKIVSAGPTTSARMNQYL-DFLFSKGVRGIIGKGGMN----AEKFKGKAVYL 110
GP+ V+ + AGPTT+ RM+++ L G+ G++GK A KAVYL
Sbjct: 421 GPVDPVRDEVVGPAGPTTATRMDKFTRQMLEQAGLLGMVGKAERGPTAIAAIRDNKAVYL 480
Query: 111 AFPGGAGSLAAKHLKVKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLYSRG 165
GGA L +K +K + +EDLGM +A++E E K++P+ VA+D G S+++ G
Sbjct: 481 MAVGGAAYLVSKAIKTSRILAFEDLGM-EAIYEFEVKEMPVTVAVDCNGESIHTTG 535
>pir||B72364 fumarate hydratase, C-terminal subunit - Thermotoga maritima
(strain MSB8) >gi|4981055|gb|AAD35626.1|AE001729_6
(AE001729) fumarate hydratase, C-terminal subunit
[Thermotoga maritima]
Length = 164
Score = 93.2 bits (228), Expect = 2e-18
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 17 LKVGDVVYLSGTIYTARDLAHKRFLS-----QGFPFNPEGSVIYHCGPL-VKAGKIVSA- 69
LK G + SG + RD A +R + P + G ++++ GP +GK V A
Sbjct: 6 LKAGQEIRYSGKLIVMRDQAQRRLKEIVDRGEEPPVDLRGQIVFYAGPAKTPSGKPVGAI 65
Query: 70 GPTTSARMNQYLDFLFSKGVRGIIGKGGMNAEKF----KGKAVYLAFPGGAGSLAAKHLK 125
GPTTSARM+ YL+ LF G IGKG + + K K VY P G + +K +K
Sbjct: 66 GPTTSARMDDYLEMLFKLGAIATIGKGKRSKKAIEACKKWKRVYFVTPSGTAAALSKRVK 125
Query: 126 VKNVY-WEDLGMADAVWELEAKDLPLLVAIDSKGRSLY 162
V +EDLG +A++E+E +D PL+VAIDS G +++
Sbjct: 126 KSRVLAFEDLG-PEAIYEIEVEDFPLIVAIDSNGNTIF 162
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65877817
Number of Sequences: 2977
Number of extensions: 2777882
Number of successful extensions: 5510
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5452
Number of HSP's gapped (non-prelim): 18
length of query: 165
length of database: 189,106,746
effective HSP length: 52
effective length of query: 113
effective length of database: 157,985,422
effective search space: 17852352686
effective search space used: 17852352686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)