BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2033 465448 465140 -103 !not a gene!
         (103 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S75396 hypothetical protein c04030 - Sulfolobus solfataricu...    80  5e-15

>pir||S75396 hypothetical protein c04030 - Sulfolobus solfataricus
           >gi|1707802|emb|CAA69559.1| (Y08257) orf c04030
           [Sulfolobus solfataricus]
           Length = 186
           
 Score = 80.4 bits (195), Expect = 5e-15
 Identities = 52/96 (54%), Positives = 60/96 (62%), Gaps = 2/96 (2%)

Query: 7   STSMGTGSATKKYLFAIGSTSFLFIAAKLSQLTVASLFFSPTSIINSFMASGSIPLLLRA 66
           ST   + S T   L A GS+ FL IAA  S+L VAS+ F+PTSII S + SG IPLLL  
Sbjct: 62  STLNSSASFTNIILLATGSSFFLLIAAMFSKLIVASVTFTPTSIITSLIVSGKIPLLLSP 121

Query: 67  LIVPNLGSSQPRYLPSSIPFLVFDLLSITPSMLSLP 102
             V NLGSS    +P S   L+FDLL I PS LSLP
Sbjct: 122 AKVGNLGSS--LLVPFSNIPLIFDLLIIKPSSLSLP 155


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.134    0.379 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34236642
Number of Sequences: 2977
Number of extensions: 1221073
Number of successful extensions: 3418
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3416
Number of HSP's gapped (non-prelim): 2
length of query: 103
length of database: 189,106,746
effective HSP length: 54
effective length of query: 49
effective length of database: 156,788,448
effective search space: 7682633952
effective search space used: 7682633952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)