BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB2035 (PAB2035) DE:PUR OPERON REPRESSOR related (237 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||F75165 pur operon repressor related PAB2035 - Pyrococcus ab... 460 e-129 pir||D71176 hypothetical protein PH1691 - Pyrococcus horikoshii ... 418 e-116 gb|AAG20257.1| (AE005100) Vng2117c [Halobacterium sp. NRC-1] 169 3e-41 gb|AAK40576.1| Conserved hypothetical protein [Sulfolobus solfat... 103 2e-21 pir||G72758 hypothetical protein APE0060 - Aeropyrum pernix (str... 87 1e-16 sp|P37551|PURR_BACSU PUR OPERON REPRESSOR >gi|2127038|pir||S6607... 85 7e-16 dbj|BAB03781.1| (AP001507) transcriptional repressor of the puri... 75 6e-13 >pir||F75165 pur operon repressor related PAB2035 - Pyrococcus abyssi (strain Orsay) >gi|5457915|emb|CAB49405.1| (AJ248284) PUR OPERON REPRESSOR related [Pyrococcus abyssi] Length = 237 Score = 460 bits (1170), Expect = e-129 Identities = 237/237 (100%), Positives = 237/237 (100%) Query: 1 MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60 MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE Sbjct: 1 MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60 Query: 61 QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120 QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT Sbjct: 61 QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120 Query: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV Sbjct: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180 Query: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL 237 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL Sbjct: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL 237 >pir||D71176 hypothetical protein PH1691 - Pyrococcus horikoshii >gi|3258120|dbj|BAA30803.1| (AP000007) 256aa long hypothetical protein [Pyrococcus horikoshii] Length = 256 Score = 418 bits (1062), Expect = e-116 Identities = 208/237 (87%), Positives = 227/237 (95%) Query: 1 MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60 MNQYE IK+K+KVIRMLRILKKTYTYEDLSKITGLPITVLNRYV+GKVLPS+ERAKELEE Sbjct: 20 MNQYEAIKEKIKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVRGKVLPSIERAKELEE 79 Query: 61 QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120 +L YL+L+EEVK+RL+FDSFGFFDTMSVLSD NLLALIAE VALKY++TGVSKVLTAAT Sbjct: 80 KLKPYLNLEEEVKRRLKFDSFGFFDTMSVLSDTNLLALIAEEVALKYLRTGVSKVLTAAT 139 Query: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180 DGIPLAVQIANELG+DVVYAKKKKEVG+ KFYEVNYVPSASGSITTLYLP WA+K+GERV Sbjct: 140 DGIPLAVQIANELGIDVVYAKKKKEVGIEKFYEVNYVPSASGSITTLYLPMWAIKRGERV 199 Query: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL 237 LIVDDVVRSGETQRAL+ELC QADA VGMFFLISVG++IDKLQEEYNIPV+ALVKL Sbjct: 200 LIVDDVVRSGETQRALVELCHQADATLVGMFFLISVGDVIDKLQEEYNIPVDALVKL 256 >gb|AAG20257.1| (AE005100) Vng2117c [Halobacterium sp. NRC-1] Length = 239 Score = 169 bits (423), Expect = 3e-41 Identities = 102/238 (42%), Positives = 139/238 (57%), Gaps = 3/238 (1%) Query: 1 MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60 MN+ E +L+ + +LR LK+T TY++LS TGLP LNRYV G VLPS +RA+E+ + Sbjct: 1 MNRAEKATLQLQAVDVLRTLKETRTYDELSADTGLPAGDLNRYVNGHVLPSADRAREVVQ 60 Query: 61 QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120 G L LQ E+ R+ D G+ D ++ D + L L+A A + VLTAAT Sbjct: 61 NAGADL-LQAELAARVHVDDDGYVDNSGIVFDQSFLELVAPVAAETFDFDAPDVVLTAAT 119 Query: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180 DGI LA +A G D YAK+ KE V +F E SG T YLPA AL G+ V Sbjct: 120 DGITLAAALAGYYGADCAYAKQSKETAVEEFVEARQ-RLESGIEFTYYLPASALDDGDTV 178 Query: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNI-IDKLQEEYNIPVEALVKL 237 L+VDD++RSGETQ L+++ + A A G+F LI+ G +D+ +E + PV AL L Sbjct: 179 LVVDDLIRSGETQELLLDIADAAGADVTGVFALIAAGETGVDRARERTDAPVGALTDL 236 >gb|AAK40576.1| Conserved hypothetical protein [Sulfolobus solfataricus] Length = 246 Score = 103 bits (255), Expect = 2e-21 Identities = 65/208 (31%), Positives = 118/208 (56%), Gaps = 2/208 (0%) Query: 7 IKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEEQLGKYL 66 ++ +L + +L+ LK YTY++LSK + +++ RYV G+ +PS +A E+ ++ Sbjct: 16 LRLRLFSVDILKELKNIYTYKELSKFFNIQESLICRYVNGRTIPSERQALEIVTRIKNKE 75 Query: 67 DLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMK-TGVSKVLTAATDGIPL 125 L +++R F D ++L NLL E +K K + V+K++ A++GIP Sbjct: 76 FLYNFFIRKIRVYEDDFIDVSNLLFYPNLLKTFLELYLIKLNKVSDVTKIVGIASNGIPF 135 Query: 126 AVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERVLIVDD 185 A +A+ L ++ +KK K+ ++ E N + ++G I+TLY+ + K +++LIVDD Sbjct: 136 ATIVASILEKPLIISKKHKDSTQIQYIEEN-IRESNGVISTLYIRGDYISKKDKILIVDD 194 Query: 186 VVRSGETQRALIELCEQADAVPVGMFFL 213 V+RSG+T +L L +A+A VG + Sbjct: 195 VIRSGKTLLSLYNLIGKANASVVGALII 222 >pir||G72758 hypothetical protein APE0060 - Aeropyrum pernix (strain K1) >gi|5103448|dbj|BAA78969.1| (AP000058) 234aa long hypothetical protein [Aeropyrum pernix] Length = 234 Score = 87.4 bits (213), Expect = 1e-16 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 13/236 (5%) Query: 1 MNQYEVIKQKLKVIRMLRILK-KTYTYEDLSKITGLPITVLNRYVKGKVLPSVERA---- 55 + Y+ ++ V+ LR + + TY +L++ TG+ T+L RYV G+V+P +A Sbjct: 2 LTHYKTEVLRVVVVEALRRARSRGVTYRELAEATGVDETLLARYVSGRVMPGARQAERIW 61 Query: 56 KELEEQLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKV 115 K L + LG L E ++K G D + L D L ++++ L +K V ++ Sbjct: 62 KGLLDILGPARLLAESLEK-------GRLDVEAALGDP-LFVVMSQLYFLDRIKARVDRI 113 Query: 116 LTAATDGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALK 175 L GI LA + LGV VV A++ KE +++ E + ASG Y L Sbjct: 114 LVPEAAGIGLATALGIALGVHVVVARRTKEYTWAEYVEAGFEDPASGRSMIFYARKDLLS 173 Query: 176 KGERVLIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPV 231 E +LIVDD+V++G T A+ ++ E + +I VG+ + IP+ Sbjct: 174 GAEWILIVDDIVQTGRTLHAMEKIVESVGGRVAAIAAVIVVGSEWKRFVRSRVIPI 229 >sp|P37551|PURR_BACSU PUR OPERON REPRESSOR >gi|2127038|pir||S66076 transcription repressor of purine operon purR - Bacillus subtilis >gi|467436|dbj|BAA05282.1| (D26185) unknown [Bacillus subtilis] >gi|2632314|emb|CAB11823.1| (Z99104) transcriptional regulator [Bacillus subtilis] Length = 285 Score = 85.0 bits (207), Expect = 7e-16 Identities = 60/220 (27%), Positives = 108/220 (48%), Gaps = 12/220 (5%) Query: 10 KLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAK--ELEEQLGKYLD 67 K + L I+K+T+ + + G +TV K +P +++A+ E + LG+ L Sbjct: 37 KSSISEDLTIIKQTFEQQGI----GTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSLA 92 Query: 68 LQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAATDGIPLAV 127 E + G+ +L ++L+ + + A + + + V+T AT GIPLA Sbjct: 93 NPERILPG------GYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAY 146 Query: 128 QIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERVLIVDDVV 187 A+ L V VV +K +V +NYV +S I T+ L ++K G VLI+DD + Sbjct: 147 AAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFM 206 Query: 188 RSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEY 227 ++G T +I L ++ +A G+ L+ + ++L +EY Sbjct: 207 KAGGTINGMINLLDEFNANVAGIGVLVEAEGVDERLVDEY 246 >dbj|BAB03781.1| (AP001507) transcriptional repressor of the purine operon [Bacillus halodurans] Length = 282 Score = 75.3 bits (182), Expect = 6e-13 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 12/220 (5%) Query: 10 KLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSV--ERAKELEEQLGKYLD 67 K + L I+K+ + E + G+ +TV K +PS+ + A++L + + L Sbjct: 38 KSSISEDLVIIKEIFESEGI----GMLLTVPGASGGVKFIPSMGEDEARQLVGAVCEKLS 93 Query: 68 LQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAATDGIPLAV 127 + + + G+ M +L D + + + + V+T AT GIPLA Sbjct: 94 ISDRILPG------GYLYMMDMLGDARFMQEVGRLFSAILSHKKIDAVITVATKGIPLAY 147 Query: 128 QIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERVLIVDDVV 187 + L V V ++ V +NYV +S I T+ L +L G V IVDD + Sbjct: 148 AVGQHLDVPVSIVRRDHRVTEGSMVSINYVSGSSKRIQTMTLARRSLSPGSNVFIVDDFM 207 Query: 188 RSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEY 227 ++G T R +++L + A G+ L+ G ++L ++Y Sbjct: 208 KAGGTVRGMMDLLHEFQAEVAGIGVLVESGEAEERLVDDY 247 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.319 0.137 0.371 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78647017 Number of Sequences: 2977 Number of extensions: 3117685 Number of successful extensions: 10059 Number of sequences better than 1.0e-10: 7 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 10050 Number of HSP's gapped (non-prelim): 7 length of query: 237 length of database: 189,106,746 effective HSP length: 59 effective length of query: 178 effective length of database: 153,796,013 effective search space: 27375690314 effective search space used: 27375690314 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 163 (67.9 bits)