BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2035 (PAB2035) DE:PUR OPERON REPRESSOR related
         (237 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75165 pur operon repressor related PAB2035 - Pyrococcus ab...   460  e-129
pir||D71176 hypothetical protein PH1691 - Pyrococcus horikoshii ...   418  e-116
gb|AAG20257.1| (AE005100) Vng2117c [Halobacterium sp. NRC-1]          169  3e-41
gb|AAK40576.1| Conserved hypothetical protein [Sulfolobus solfat...   103  2e-21
pir||G72758 hypothetical protein APE0060 - Aeropyrum pernix (str...    87  1e-16
sp|P37551|PURR_BACSU PUR OPERON REPRESSOR >gi|2127038|pir||S6607...    85  7e-16
dbj|BAB03781.1| (AP001507) transcriptional repressor of the puri...    75  6e-13

>pir||F75165 pur operon repressor related PAB2035 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457915|emb|CAB49405.1| (AJ248284) PUR OPERON
           REPRESSOR related [Pyrococcus abyssi]
           Length = 237
           
 Score =  460 bits (1170), Expect = e-129
 Identities = 237/237 (100%), Positives = 237/237 (100%)

Query: 1   MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60
           MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE
Sbjct: 1   MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60

Query: 61  QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120
           QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT
Sbjct: 61  QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120

Query: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180
           DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV
Sbjct: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180

Query: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL 237
           LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL
Sbjct: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL 237


>pir||D71176 hypothetical protein PH1691 - Pyrococcus horikoshii
           >gi|3258120|dbj|BAA30803.1| (AP000007) 256aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 256
           
 Score =  418 bits (1062), Expect = e-116
 Identities = 208/237 (87%), Positives = 227/237 (95%)

Query: 1   MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60
           MNQYE IK+K+KVIRMLRILKKTYTYEDLSKITGLPITVLNRYV+GKVLPS+ERAKELEE
Sbjct: 20  MNQYEAIKEKIKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVRGKVLPSIERAKELEE 79

Query: 61  QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120
           +L  YL+L+EEVK+RL+FDSFGFFDTMSVLSD NLLALIAE VALKY++TGVSKVLTAAT
Sbjct: 80  KLKPYLNLEEEVKRRLKFDSFGFFDTMSVLSDTNLLALIAEEVALKYLRTGVSKVLTAAT 139

Query: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180
           DGIPLAVQIANELG+DVVYAKKKKEVG+ KFYEVNYVPSASGSITTLYLP WA+K+GERV
Sbjct: 140 DGIPLAVQIANELGIDVVYAKKKKEVGIEKFYEVNYVPSASGSITTLYLPMWAIKRGERV 199

Query: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPVEALVKL 237
           LIVDDVVRSGETQRAL+ELC QADA  VGMFFLISVG++IDKLQEEYNIPV+ALVKL
Sbjct: 200 LIVDDVVRSGETQRALVELCHQADATLVGMFFLISVGDVIDKLQEEYNIPVDALVKL 256


>gb|AAG20257.1| (AE005100) Vng2117c [Halobacterium sp. NRC-1]
           Length = 239
           
 Score =  169 bits (423), Expect = 3e-41
 Identities = 102/238 (42%), Positives = 139/238 (57%), Gaps = 3/238 (1%)

Query: 1   MNQYEVIKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEE 60
           MN+ E    +L+ + +LR LK+T TY++LS  TGLP   LNRYV G VLPS +RA+E+ +
Sbjct: 1   MNRAEKATLQLQAVDVLRTLKETRTYDELSADTGLPAGDLNRYVNGHVLPSADRAREVVQ 60

Query: 61  QLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAAT 120
             G  L LQ E+  R+  D  G+ D   ++ D + L L+A   A  +       VLTAAT
Sbjct: 61  NAGADL-LQAELAARVHVDDDGYVDNSGIVFDQSFLELVAPVAAETFDFDAPDVVLTAAT 119

Query: 121 DGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERV 180
           DGI LA  +A   G D  YAK+ KE  V +F E       SG   T YLPA AL  G+ V
Sbjct: 120 DGITLAAALAGYYGADCAYAKQSKETAVEEFVEARQ-RLESGIEFTYYLPASALDDGDTV 178

Query: 181 LIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNI-IDKLQEEYNIPVEALVKL 237
           L+VDD++RSGETQ  L+++ + A A   G+F LI+ G   +D+ +E  + PV AL  L
Sbjct: 179 LVVDDLIRSGETQELLLDIADAAGADVTGVFALIAAGETGVDRARERTDAPVGALTDL 236


>gb|AAK40576.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 246
           
 Score =  103 bits (255), Expect = 2e-21
 Identities = 65/208 (31%), Positives = 118/208 (56%), Gaps = 2/208 (0%)

Query: 7   IKQKLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAKELEEQLGKYL 66
           ++ +L  + +L+ LK  YTY++LSK   +  +++ RYV G+ +PS  +A E+  ++    
Sbjct: 16  LRLRLFSVDILKELKNIYTYKELSKFFNIQESLICRYVNGRTIPSERQALEIVTRIKNKE 75

Query: 67  DLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMK-TGVSKVLTAATDGIPL 125
            L     +++R     F D  ++L   NLL    E   +K  K + V+K++  A++GIP 
Sbjct: 76  FLYNFFIRKIRVYEDDFIDVSNLLFYPNLLKTFLELYLIKLNKVSDVTKIVGIASNGIPF 135

Query: 126 AVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERVLIVDD 185
           A  +A+ L   ++ +KK K+    ++ E N +  ++G I+TLY+    + K +++LIVDD
Sbjct: 136 ATIVASILEKPLIISKKHKDSTQIQYIEEN-IRESNGVISTLYIRGDYISKKDKILIVDD 194

Query: 186 VVRSGETQRALIELCEQADAVPVGMFFL 213
           V+RSG+T  +L  L  +A+A  VG   +
Sbjct: 195 VIRSGKTLLSLYNLIGKANASVVGALII 222


>pir||G72758 hypothetical protein APE0060 - Aeropyrum pernix (strain K1)
           >gi|5103448|dbj|BAA78969.1| (AP000058) 234aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 234
           
 Score = 87.4 bits (213), Expect = 1e-16
 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 13/236 (5%)

Query: 1   MNQYEVIKQKLKVIRMLRILK-KTYTYEDLSKITGLPITVLNRYVKGKVLPSVERA---- 55
           +  Y+    ++ V+  LR  + +  TY +L++ TG+  T+L RYV G+V+P   +A    
Sbjct: 2   LTHYKTEVLRVVVVEALRRARSRGVTYRELAEATGVDETLLARYVSGRVMPGARQAERIW 61

Query: 56  KELEEQLGKYLDLQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKV 115
           K L + LG    L E ++K       G  D  + L D  L  ++++   L  +K  V ++
Sbjct: 62  KGLLDILGPARLLAESLEK-------GRLDVEAALGDP-LFVVMSQLYFLDRIKARVDRI 113

Query: 116 LTAATDGIPLAVQIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALK 175
           L     GI LA  +   LGV VV A++ KE   +++ E  +   ASG     Y     L 
Sbjct: 114 LVPEAAGIGLATALGIALGVHVVVARRTKEYTWAEYVEAGFEDPASGRSMIFYARKDLLS 173

Query: 176 KGERVLIVDDVVRSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEYNIPV 231
             E +LIVDD+V++G T  A+ ++ E        +  +I VG+   +      IP+
Sbjct: 174 GAEWILIVDDIVQTGRTLHAMEKIVESVGGRVAAIAAVIVVGSEWKRFVRSRVIPI 229


>sp|P37551|PURR_BACSU PUR OPERON REPRESSOR >gi|2127038|pir||S66076 transcription
           repressor of purine operon purR - Bacillus subtilis
           >gi|467436|dbj|BAA05282.1| (D26185) unknown [Bacillus
           subtilis] >gi|2632314|emb|CAB11823.1| (Z99104)
           transcriptional regulator [Bacillus subtilis]
           Length = 285
           
 Score = 85.0 bits (207), Expect = 7e-16
 Identities = 60/220 (27%), Positives = 108/220 (48%), Gaps = 12/220 (5%)

Query: 10  KLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSVERAK--ELEEQLGKYLD 67
           K  +   L I+K+T+  + +    G  +TV       K +P +++A+  E  + LG+ L 
Sbjct: 37  KSSISEDLTIIKQTFEQQGI----GTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSLA 92

Query: 68  LQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAATDGIPLAV 127
             E +         G+     +L   ++L+ + +  A  + +  +  V+T AT GIPLA 
Sbjct: 93  NPERILPG------GYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAY 146

Query: 128 QIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERVLIVDDVV 187
             A+ L V VV  +K  +V       +NYV  +S  I T+ L   ++K G  VLI+DD +
Sbjct: 147 AAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFM 206

Query: 188 RSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEY 227
           ++G T   +I L ++ +A   G+  L+    + ++L +EY
Sbjct: 207 KAGGTINGMINLLDEFNANVAGIGVLVEAEGVDERLVDEY 246


>dbj|BAB03781.1| (AP001507) transcriptional repressor of the purine operon [Bacillus
           halodurans]
           Length = 282
           
 Score = 75.3 bits (182), Expect = 6e-13
 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 12/220 (5%)

Query: 10  KLKVIRMLRILKKTYTYEDLSKITGLPITVLNRYVKGKVLPSV--ERAKELEEQLGKYLD 67
           K  +   L I+K+ +  E +    G+ +TV       K +PS+  + A++L   + + L 
Sbjct: 38  KSSISEDLVIIKEIFESEGI----GMLLTVPGASGGVKFIPSMGEDEARQLVGAVCEKLS 93

Query: 68  LQEEVKKRLRFDSFGFFDTMSVLSDVNLLALIAEHVALKYMKTGVSKVLTAATDGIPLAV 127
           + + +         G+   M +L D   +  +    +       +  V+T AT GIPLA 
Sbjct: 94  ISDRILPG------GYLYMMDMLGDARFMQEVGRLFSAILSHKKIDAVITVATKGIPLAY 147

Query: 128 QIANELGVDVVYAKKKKEVGVSKFYEVNYVPSASGSITTLYLPAWALKKGERVLIVDDVV 187
            +   L V V   ++   V       +NYV  +S  I T+ L   +L  G  V IVDD +
Sbjct: 148 AVGQHLDVPVSIVRRDHRVTEGSMVSINYVSGSSKRIQTMTLARRSLSPGSNVFIVDDFM 207

Query: 188 RSGETQRALIELCEQADAVPVGMFFLISVGNIIDKLQEEY 227
           ++G T R +++L  +  A   G+  L+  G   ++L ++Y
Sbjct: 208 KAGGTVRGMMDLLHEFQAEVAGIGVLVESGEAEERLVDDY 247


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.137    0.371 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78647017
Number of Sequences: 2977
Number of extensions: 3117685
Number of successful extensions: 10059
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10050
Number of HSP's gapped (non-prelim): 7
length of query: 237
length of database: 189,106,746
effective HSP length: 59
effective length of query: 178
effective length of database: 153,796,013
effective search space: 27375690314
effective search space used: 27375690314
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)