BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2036 461359 460883 -159 !not a gene!
         (159 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D72556 hypothetical protein APE1736 - Aeropyrum pernix (str...    74  8e-13

>pir||D72556 hypothetical protein APE1736 - Aeropyrum pernix (strain K1)
           >gi|5105424|dbj|BAA80737.1| (AP000062) 236aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 236
           
 Score = 74.1 bits (179), Expect = 8e-13
 Identities = 56/151 (37%), Positives = 65/151 (42%), Gaps = 3/151 (1%)

Query: 2   SSSSVIESIMTLNFLSLSSPTEITSSGR--EYPNPGIILRICLSGPIFLMASSWAYMSLS 59
           SSS V+ SI+ ++    SSP+    S        PG I R    GP FL+A S  YM   
Sbjct: 7   SSSYVMLSIIAIHLFIFSSPSFSAPSSMLASMEAPGSIWRTFPRGPSFLIALSCLYMVRI 66

Query: 60  VNFPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETNLAGSNGSKSSIFSPVPMNF 119
           V  P                                 L T   G+ GS S   SPVPMNF
Sbjct: 67  VILPFNTSSAALSSSPASSRLFILSSRLSKSPIPSI-LATKRLGAKGSSSPSVSPVPMNF 125

Query: 120 IGAPVAATADKAPPPLAELSSLVTIIEPIGV 150
           I APV A A +APPP A  S  VTI+ PIGV
Sbjct: 126 IRAPVTAAAVRAPPPRAVPSIFVTIMLPIGV 156


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.130    0.369 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44626035
Number of Sequences: 2977
Number of extensions: 1396008
Number of successful extensions: 5048
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5047
Number of HSP's gapped (non-prelim): 1
length of query: 159
length of database: 189,106,746
effective HSP length: 58
effective length of query: 101
effective length of database: 154,394,500
effective search space: 15593844500
effective search space used: 15593844500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)