BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2041 (PAB2041) DE:Hypothetical protein
         (388 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75163 hypothetical protein PAB2041 - Pyrococcus abyssi (st...   823  0.0
pir||G71178 hypothetical protein PH1708 - Pyrococcus horikoshii ...   511  e-144

>pir||E75163 hypothetical protein PAB2041 - Pyrococcus abyssi (strain Orsay)
           >gi|5457898|emb|CAB49388.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 388
           
 Score =  823 bits (2103), Expect = 0.0
 Identities = 388/388 (100%), Positives = 388/388 (100%)

Query: 1   MRKRWRKTHMKKFIGFSLALLLLGVAISGCIGGSPTEVPTETTTPEEQGYTSTPTPTQSQ 60
           MRKRWRKTHMKKFIGFSLALLLLGVAISGCIGGSPTEVPTETTTPEEQGYTSTPTPTQSQ
Sbjct: 1   MRKRWRKTHMKKFIGFSLALLLLGVAISGCIGGSPTEVPTETTTPEEQGYTSTPTPTQSQ 60

Query: 61  PQGNQHSTTTTTPLDQSTTQTQTQTETQTSTGTQTQTEVEEAYWSPWNNEPIEVNGKEYK 120
           PQGNQHSTTTTTPLDQSTTQTQTQTETQTSTGTQTQTEVEEAYWSPWNNEPIEVNGKEYK
Sbjct: 61  PQGNQHSTTTTTPLDQSTTQTQTQTETQTSTGTQTQTEVEEAYWSPWNNEPIEVNGKEYK 120

Query: 121 IVGYQVNYKVQPSPDSETYEYKIEKSVRKVKVHIYGMSLSGGKVDLGEQEVYEYLTVITP 180
           IVGYQVNYKVQPSPDSETYEYKIEKSVRKVKVHIYGMSLSGGKVDLGEQEVYEYLTVITP
Sbjct: 121 IVGYQVNYKVQPSPDSETYEYKIEKSVRKVKVHIYGMSLSGGKVDLGEQEVYEYLTVITP 180

Query: 181 IKAMNMEDKLIFRFWLPKESNEMFLYPWDVGWLGFFSPMGSSGDFSGLEFEYMGEKLTIT 240
           IKAMNMEDKLIFRFWLPKESNEMFLYPWDVGWLGFFSPMGSSGDFSGLEFEYMGEKLTIT
Sbjct: 181 IKAMNMEDKLIFRFWLPKESNEMFLYPWDVGWLGFFSPMGSSGDFSGLEFEYMGEKLTIT 240

Query: 241 NPTPYKSGLFPYVNGNGDFMEEVSDDLNNLYMGWAAMINLALWSAWSDKNVLVPQHGSWS 300
           NPTPYKSGLFPYVNGNGDFMEEVSDDLNNLYMGWAAMINLALWSAWSDKNVLVPQHGSWS
Sbjct: 241 NPTPYKSGLFPYVNGNGDFMEEVSDDLNNLYMGWAAMINLALWSAWSDKNVLVPQHGSWS 300

Query: 301 DGLHSWKWKTNPDGNVELSGMTFRVVNAEWNYSGGPENIDLSGKGRFSPKIPIPLYIEGR 360
           DGLHSWKWKTNPDGNVELSGMTFRVVNAEWNYSGGPENIDLSGKGRFSPKIPIPLYIEGR
Sbjct: 301 DGLHSWKWKTNPDGNVELSGMTFRVVNAEWNYSGGPENIDLSGKGRFSPKIPIPLYIEGR 360

Query: 361 FYSKDPETGEEVEVYGEYELEDMKLEEI 388
           FYSKDPETGEEVEVYGEYELEDMKLEEI
Sbjct: 361 FYSKDPETGEEVEVYGEYELEDMKLEEI 388


>pir||G71178 hypothetical protein PH1708 - Pyrococcus horikoshii
           >gi|3258139|dbj|BAA30822.1| (AP000007) 367aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 367
           
 Score =  511 bits (1302), Expect = e-144
 Identities = 234/380 (61%), Positives = 288/380 (75%), Gaps = 22/380 (5%)

Query: 10  MKKFIGFSLALLLLGVAISGCIGG-SPTEVPTETTTPEEQGYTSTPTPTQSQPQGNQHST 68
           MKKF+ F++ALLLLGVAI GCIGG SPT      TT      T TP  TQ+Q Q      
Sbjct: 9   MKKFLAFTMALLLLGVAIVGCIGGESPTSSKNSPTT------TQTPLETQTQEQ------ 56

Query: 69  TTTTPLDQSTTQTQTQTETQTSTGTQTQTEVEEAYWSPWNNEPIEVNGKEYKIVGYQVNY 128
                    T+ T+T TET   T  +TQT +EEAYW PW    +  NG EYKI+GY+++Y
Sbjct: 57  ---------TSPTETATETPAPTSPETQTSIEEAYWKPWEYSTVRKNGAEYKIIGYRLSY 107

Query: 129 KVQPSPDSETYEYKIEKSVRKVKVHIYGMSLSGGKVDLGEQEVYEYLTVITPIKAMNMED 188
           KV+PS DSETYEY IEK+V++ K+ ++G+ LSG KVDLG++ VYEY T +TPI ++NMED
Sbjct: 108 KVRPSSDSETYEYTIEKNVKRTKIQVFGIGLSGEKVDLGKKNVYEYETTVTPINSVNMED 167

Query: 189 KLIFRFWLPKESNEMFLYPWDVGWLGFFSPMGSSGDFSGLEFEYMGEKLTITNPTPYKSG 248
           KLIFRFWL  ES +MF+YPWD+GW G FSPMG    F G+EFEY G+K T+ NPTPYK G
Sbjct: 168 KLIFRFWLTNESQDMFIYPWDIGWSGIFSPMGGEERFVGVEFEYRGKKFTVINPTPYKKG 227

Query: 249 LFPYVNGNGDFMEEVSDDLNNLYMGWAAMINLALWSAWSDKNVLVPQHGSWSDGLHSWKW 308
           LFPY+NGN ++M+E++DDLNNLYMGWAAM+NLALWSAWSDKNVLVPQ G+WSDG HSW+W
Sbjct: 228 LFPYINGNSEWMKELNDDLNNLYMGWAAMVNLALWSAWSDKNVLVPQQGTWSDGTHSWEW 287

Query: 309 KTNPDGNVELSGMTFRVVNAEWNYSGGPENIDLSGKGRFSPKIPIPLYIEGRFYSKDPET 368
           +T PDG +  SG+TFRV+NAEW YSG PE I LSG G+F+P+I IPL +EG F SKDP+T
Sbjct: 288 ETRPDGEITFSGVTFRVINAEWKYSGEPEGIKLSGNGKFAPEIFIPLSVEGWFSSKDPKT 347

Query: 369 GEEVEVYGEYELEDMKLEEI 388
           GE +E+YG YEL+D+KLEEI
Sbjct: 348 GENIEIYGAYELQDIKLEEI 367


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.312    0.132    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172250405
Number of Sequences: 2977
Number of extensions: 8401950
Number of successful extensions: 50265
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50236
Number of HSP's gapped (non-prelim): 2
length of query: 388
length of database: 189,106,746
effective HSP length: 55
effective length of query: 333
effective length of database: 156,189,961
effective search space: 52011257013
effective search space used: 52011257013
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 166 (69.1 bits)