BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2042 (PAB2042) DE:Hypothetical protein
         (139 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75163 hypothetical protein PAB2042 - Pyrococcus abyssi (st...   276  9e-74
pir||A71179 hypothetical protein PH1710 - Pyrococcus horikoshii ...   245  2e-64
pir||G64464 hypothetical protein MJ1320 - Methanococcus jannasch...    92  4e-18
pir||A69133 conserved hypothetical protein MTH262 - Methanobacte...    71  8e-12

>pir||D75163 hypothetical protein PAB2042 - Pyrococcus abyssi (strain Orsay)
           >gi|5457897|emb|CAB49387.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 139
           
 Score =  276 bits (698), Expect = 9e-74
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MKGKVWLVVPDTNFLFIPGQFGVDIISEFERILDVKYQVAIPNVVLEEIKTIIREGKVKG 60
           MKGKVWLVVPDTNFLFIPGQFGVDIISEFERILDVKYQVAIPNVVLEEIKTIIREGKVKG
Sbjct: 1   MKGKVWLVVPDTNFLFIPGQFGVDIISEFERILDVKYQVAIPNVVLEEIKTIIREGKVKG 60

Query: 61  KDLMAAKIALKIAERFPKIYVGEFLSKPTDELLYEYAIANDNVIICTNDRKLRKRLREAG 120
           KDLMAAKIALKIAERFPKIYVGEFLSKPTDELLYEYAIANDNVIICTNDRKLRKRLREAG
Sbjct: 61  KDLMAAKIALKIAERFPKIYVGEFLSKPTDELLYEYAIANDNVIICTNDRKLRKRLREAG 120

Query: 121 VPVIFLRQKKKLELEGILE 139
           VPVIFLRQKKKLELEGILE
Sbjct: 121 VPVIFLRQKKKLELEGILE 139


>pir||A71179 hypothetical protein PH1710 - Pyrococcus horikoshii
           >gi|3258141|dbj|BAA30824.1| (AP000007) 138aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 138
           
 Score =  245 bits (618), Expect = 2e-64
 Identities = 118/136 (86%), Positives = 130/136 (94%)

Query: 4   KVWLVVPDTNFLFIPGQFGVDIISEFERILDVKYQVAIPNVVLEEIKTIIREGKVKGKDL 63
           KVWLV+PDTNFLFIPGQFGVDIISE  RILDVKYQ+AIPNVV++EI TIIREGKVKG+DL
Sbjct: 3   KVWLVIPDTNFLFIPGQFGVDIISELSRILDVKYQIAIPNVVIDEINTIIREGKVKGRDL 62

Query: 64  MAAKIALKIAERFPKIYVGEFLSKPTDELLYEYAIANDNVIICTNDRKLRKRLREAGVPV 123
           +AA+IALKIAERFPKIY+GEFLSK TDELLYEYAI +DNVIICTNDR LRKRLREAGVPV
Sbjct: 63  LAARIALKIAERFPKIYIGEFLSKSTDELLYEYAITHDNVIICTNDRTLRKRLREAGVPV 122

Query: 124 IFLRQKKKLELEGILE 139
           IFLRQKKKLE+EG+L+
Sbjct: 123 IFLRQKKKLEIEGMLD 138


>pir||G64464 hypothetical protein MJ1320 - Methanococcus jannaschii
           >gi|1591960|gb|AAB99330.1| (U67572) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 131
           
 Score = 91.7 bits (224), Expect = 4e-18
 Identities = 43/134 (32%), Positives = 84/134 (62%), Gaps = 3/134 (2%)

Query: 5   VWLVVPDTNFLFIPGQFGVDIISEFERILDVKYQVAIPNVVLEEIKTIIREGKVKGKDLM 64
           ++ +VPDTNFL    +  ++   E ER L+ K+++ I + + EE++ +++   +KGK+ +
Sbjct: 1   MYKIVPDTNFLIYVFKHKINFDYEIERALNTKFEIVILSPIKEELERLLKSRDLKGKEKL 60

Query: 65  AAKIALKIAERFPKIYVGEFLSKPTDELLYEYAIANDNVIICTNDRKLRKRLREAGVPVI 124
           A  +AL   + +  +   ++ +   DE +  YA  N+NVI+ TND++L+++L E  +PV+
Sbjct: 61  AVNLALAKIKNYKLV---DYTANYADEAILNYAKENENVIVATNDKELKEKLMENNIPVM 117

Query: 125 FLRQKKKLELEGIL 138
            +RQKK  E+ G++
Sbjct: 118 VVRQKKYFEIFGMV 131


>pir||A69133 conserved hypothetical protein MTH262 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621312|gb|AAB84768.1| (AE000812) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 119
           
 Score = 70.6 bits (170), Expect = 8e-12
 Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 9/125 (7%)

Query: 17  IPGQFGVDIISEFERILDVKYQVAIPNVVLEEIKTIIREGKVKGKDLMAAKIALKIAERF 76
           IP QF VDI+SE  R+   K  + +P+ V+ E++ I R     G   +AA + L +A++ 
Sbjct: 2   IPYQFRVDIVSELRRLFP-KNDLLVPSFVIGELEGIKRHSG--GDARIAASVGLALAKKP 58

Query: 77  P-KIYVGEFLSKPTDELLYEYAIANDNVIICTNDRKLRKRLREAGVPVIFLRQKKKLELE 135
           P +I+  + L   T     + A+   + ++CT+DR+LR+R R  G+PV++LRQK+ L ++
Sbjct: 59  PFRIFEEKLLEGET----VDDALLRISDVLCTSDRELRRRARSKGIPVVYLRQKRYLGVD 114

Query: 136 G-ILE 139
           G ILE
Sbjct: 115 GHILE 119


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.145    0.407 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51430650
Number of Sequences: 2977
Number of extensions: 1992727
Number of successful extensions: 4298
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4294
Number of HSP's gapped (non-prelim): 4
length of query: 139
length of database: 189,106,746
effective HSP length: 52
effective length of query: 87
effective length of database: 157,985,422
effective search space: 13744731714
effective search space used: 13744731714
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)