BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2054 427682 427368 -105 !not a gene!
         (105 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D72626 hypothetical protein APE1468 - Aeropyrum pernix (str...    71  4e-12

>pir||D72626 hypothetical protein APE1468 - Aeropyrum pernix (strain K1)
          >gi|5105152|dbj|BAA80466.1| (AP000061) 138aa long
          hypothetical protein [Aeropyrum pernix]
          Length = 138
          
 Score = 70.6 bits (170), Expect = 4e-12
 Identities = 42/97 (43%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 1  MVTPFTPLGSPTITYSGLGT--SRALAPLENPSSSTKPANITFALLSTI-----ANSSAD 53
          M TP  P+GSPTI + G+    +R  AP  +PSS T P         ++      +  A 
Sbjct: 1  MATPSPPVGSPTIMWRGVSPLETRLQAPGLSPSSPTSPRTAELQERPSLDARWSPSIMAA 60

Query: 54 KGPLASTLPRPQSISPSILTGMYPGTVSTCPASKIRG 90
          +GPLAST PRPQS+ PS L    PGTVS CP S   G
Sbjct: 61 RGPLASTAPRPQSVYPSSLASSLPGTVSRCPTSPTTG 97


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.310    0.127    0.357 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34094739
Number of Sequences: 2977
Number of extensions: 1218549
Number of successful extensions: 3762
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3761
Number of HSP's gapped (non-prelim): 1
length of query: 105
length of database: 189,106,746
effective HSP length: 57
effective length of query: 48
effective length of database: 154,992,987
effective search space: 7439663376
effective search space used: 7439663376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 159 (66.3 bits)