BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2057 (PAB2057) DE:Hypothetical protein
         (302 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75159 hypothetical protein PAB2057 - Pyrococcus abyssi (st...   592  e-168
pir||F71167 hypothetical protein PH0538 - Pyrococcus horikoshii ...   172  4e-42

>pir||F75159 hypothetical protein PAB2057 - Pyrococcus abyssi (strain Orsay)
           >gi|5457867|emb|CAB49357.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 302
           
 Score =  592 bits (1511), Expect = e-168
 Identities = 302/302 (100%), Positives = 302/302 (100%)

Query: 1   MNEEKRTLASGSKELLFIGALLSILAFIPGIGGLLGLVGGIIYLIGIVMWRNVDSRPLTL 60
           MNEEKRTLASGSKELLFIGALLSILAFIPGIGGLLGLVGGIIYLIGIVMWRNVDSRPLTL
Sbjct: 1   MNEEKRTLASGSKELLFIGALLSILAFIPGIGGLLGLVGGIIYLIGIVMWRNVDSRPLTL 60

Query: 61  TIVNIGLSIVGLIIAISFMGEIYEPLLQPGIFKVIYIFLLLWYPTLAVTMALHRYVLLYF 120
           TIVNIGLSIVGLIIAISFMGEIYEPLLQPGIFKVIYIFLLLWYPTLAVTMALHRYVLLYF
Sbjct: 61  TIVNIGLSIVGLIIAISFMGEIYEPLLQPGIFKVIYIFLLLWYPTLAVTMALHRYVLLYF 120

Query: 121 YEATGQEEFLQARNYILYGIITLPFLVGTIFLVVARIIEMIGYKNMTETPIVIEERPFEI 180
           YEATGQEEFLQARNYILYGIITLPFLVGTIFLVVARIIEMIGYKNMTETPIVIEERPFEI
Sbjct: 121 YEATGQEEFLQARNYILYGIITLPFLVGTIFLVVARIIEMIGYKNMTETPIVIEERPFEI 180

Query: 181 NAKEIIGISGLAVILSLVMINFLTPSFDVRAQEGKVILLLNRENEVLEGFIVHEGPCDIS 240
           NAKEIIGISGLAVILSLVMINFLTPSFDVRAQEGKVILLLNRENEVLEGFIVHEGPCDIS
Sbjct: 181 NAKEIIGISGLAVILSLVMINFLTPSFDVRAQEGKVILLLNRENEVLEGFIVHEGPCDIS 240

Query: 241 SPCIRKVELDGVQIYSPYSIHIVNNRQVIEVSIPINSTELRVITRSGTYTFNIQDLLRGS 300
           SPCIRKVELDGVQIYSPYSIHIVNNRQVIEVSIPINSTELRVITRSGTYTFNIQDLLRGS
Sbjct: 241 SPCIRKVELDGVQIYSPYSIHIVNNRQVIEVSIPINSTELRVITRSGTYTFNIQDLLRGS 300

Query: 301 QG 302
           QG
Sbjct: 301 QG 302


>pir||F71167 hypothetical protein PH0538 - Pyrococcus horikoshii
           >gi|3256944|dbj|BAA29627.1| (AP000002) 290aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 290
           
 Score =  172 bits (432), Expect = 4e-42
 Identities = 96/272 (35%), Positives = 153/272 (55%), Gaps = 5/272 (1%)

Query: 13  KELLFIGALLSILAFIPGIGGLLGLVGGIIYLIGIVMWRN-VDSRPLTLTIVNIGLSIVG 71
           K LLFIG LL IL+ +PGIG LL L+G +IY+ G+  W+  VD RP  L      LS+  
Sbjct: 11  KTLLFIGTLLVILSMLPGIGNLLSLIGWLIYMYGLYRWKELVDERPFKLGFAIFMLSLFQ 70

Query: 72  LIIAISFMGEIYEPLLQPGIFKVIYIFLLLWYPTLAVTMALHRYVLLYFYEATGQEEFLQ 131
           +I  ++ +G     L      K+I+ + +L YP +A+ + L R +L YF+E +G+E FL+
Sbjct: 71  VIFVLALLGSERIALGITSFSKLIFTYFILSYPFVAMALVLKRLMLEYFHEVSGEENFLK 130

Query: 132 ARNYILYGIITLPFLVGTIFLVVARIIEMIGYKNMTETPIVIEERPFEINAKEIIGISGL 191
           AR  +LY +   P ++G I  +VA + E+IGYKNM E       +   +  +E   + G 
Sbjct: 131 AREILLYALFLYPVIIGGIIGIVALVYELIGYKNMPEAVTPHPGKEITLKGREFATLVG- 189

Query: 192 AVILSLVMINFLTPSFDVRAQEGKVILLLNRENEVLEGFIVHEGPCDISSPCIRKVELDG 251
           +++++L+++  + P +D + ++  V        E ++G IV+E PC     CIR V +D 
Sbjct: 190 SLLITLILLYAIIPKYDFKVEKNNVRFYGKLSGEFVDGIIVYEKPC--PGVCIRDVIVDN 247

Query: 252 VQIYSPYSIHIVNNRQVIEVSIPINSTELRVI 283
             IY    +  VN +QV+ VSIP    E++VI
Sbjct: 248 ESIYEG-PLEKVNGKQVVRVSIPRKVKEIKVI 278


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.147    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105046140
Number of Sequences: 2977
Number of extensions: 4393209
Number of successful extensions: 17803
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17797
Number of HSP's gapped (non-prelim): 2
length of query: 302
length of database: 189,106,746
effective HSP length: 53
effective length of query: 249
effective length of database: 157,386,935
effective search space: 39189346815
effective search space used: 39189346815
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 165 (68.7 bits)