BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2058 418415 418002 -138 !not a gene!
         (138 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71181 hypothetical protein PH1728 - Pyrococcus horikoshii ...   128  3e-29

>pir||C71181 hypothetical protein PH1728 - Pyrococcus horikoshii
           >gi|3258159|dbj|BAA30842.1| (AP000007) 173aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 173
           
 Score =  128 bits (318), Expect = 3e-29
 Identities = 77/127 (60%), Positives = 85/127 (66%)

Query: 1   MGVDSVTGVATLELTMLIDFTKKYWPSIVPSNVITNIRPRSLILSFLTSWDILGSRKVVP 60
           +GVDSVTGVAT+ELT LIDF K+Y P+IVP+  ITN RP S  L+FL S  ILG     P
Sbjct: 45  IGVDSVTGVATVELTKLIDFMKRYCPTIVPNREITNTRPISPSLNFLISLHILGKNGKPP 104

Query: 61  RAPDAILSPVIKTADSSLTSQSVIKTANVHISSATMTRPTPLRLISELSLPSLKRIITAR 120
           R P+ IL   IKT  S LTSQSVI  A VH SSAT T  TPL LI   SL SLKR  TA 
Sbjct: 105 RIPELILKAAIKTGGSLLTSQSVINMAIVHKSSATTTSRTPLALIPPDSLFSLKRRRTAS 164

Query: 121 TIKIAPK 127
            IK AP+
Sbjct: 165 IIKPAPR 171


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.132    0.364 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43268680
Number of Sequences: 2977
Number of extensions: 1472275
Number of successful extensions: 3976
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3975
Number of HSP's gapped (non-prelim): 1
length of query: 138
length of database: 189,106,746
effective HSP length: 58
effective length of query: 80
effective length of database: 154,394,500
effective search space: 12351560000
effective search space used: 12351560000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)