BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2059 (PAB2059) DE:Hypothetical protein
(219 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75159 hypothetical protein PAB2059 - Pyrococcus abyssi (st... 439 e-122
pir||E71181 hypothetical protein PH1730 - Pyrococcus horikoshii ... 319 2e-86
sp|Q58345|Y935_METJA HYPOTHETICAL PROTEIN MJ0935 >gi|2128586|pir... 132 2e-30
gb|AAK40670.1| Conserved hypothetical protein [Sulfolobus solfat... 74 2e-12
>pir||D75159 hypothetical protein PAB2059 - Pyrococcus abyssi (strain Orsay)
>gi|5457865|emb|CAB49355.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 439 bits (1118), Expect = e-122
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MARLKEAYMDLKFLLNRGYRKKVALNFVCNHYRLPSLYRHFLARCVFSDYWILEVREKAS 60
MARLKEAYMDLKFLLNRGYRKKVALNFVCNHYRLPSLYRHFLARCVFSDYWILEVREKAS
Sbjct: 1 MARLKEAYMDLKFLLNRGYRKKVALNFVCNHYRLPSLYRHFLARCVFSDYWILEVREKAS 60
Query: 61 SCKGEVLGVDGFNVLITIESLMNGEAIRCEDWIIRDLKYQGKYRISEKTEESIRLMLLAI 120
SCKGEVLGVDGFNVLITIESLMNGEAIRCEDWIIRDLKYQGKYRISEKTEESIRLMLLAI
Sbjct: 61 SCKGEVLGVDGFNVLITIESLMNGEAIRCEDWIIRDLKYQGKYRISEKTEESIRLMLLAI 120
Query: 121 KEVEPREVVIFYGASNPRSALVKRLTEESMRKLEIDGEVKLVKSPDFELKNFEYVATGDV 180
KEVEPREVVIFYGASNPRSALVKRLTEESMRKLEIDGEVKLVKSPDFELKNFEYVATGDV
Sbjct: 121 KEVEPREVVIFYGASNPRSALVKRLTEESMRKLEIDGEVKLVKSPDFELKNFEYVATGDV 180
Query: 181 GIIEKAKHVVDLPSYASILIKQNPMEFKEMLNILDERLK 219
GIIEKAKHVVDLPSYASILIKQNPMEFKEMLNILDERLK
Sbjct: 181 GIIEKAKHVVDLPSYASILIKQNPMEFKEMLNILDERLK 219
>pir||E71181 hypothetical protein PH1730 - Pyrococcus horikoshii
>gi|3258161|dbj|BAA30844.1| (AP000007) 219aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 219
Score = 319 bits (809), Expect = 2e-86
Identities = 148/219 (67%), Positives = 188/219 (85%)
Query: 1 MARLKEAYMDLKFLLNRGYRKKVALNFVCNHYRLPSLYRHFLARCVFSDYWILEVREKAS 60
M +LKEAY DLKFLLNRGYRKK+AL FVCNHY LP YRHFLARCVFSDYWI EVREK S
Sbjct: 1 MGKLKEAYFDLKFLLNRGYRKKLALEFVCNHYMLPLQYRHFLARCVFSDYWINEVREKIS 60
Query: 61 SCKGEVLGVDGFNVLITIESLMNGEAIRCEDWIIRDLKYQGKYRISEKTEESIRLMLLAI 120
SC+ ++LG+DGFN+LIT+ESLM G AIRCED I+RDLKYQGKY+I+EKTE++I +MLLAI
Sbjct: 61 SCEEKILGIDGFNILITVESLMEGTAIRCEDGIVRDLKYQGKYKINEKTEKAIEVMLLAI 120
Query: 121 KEVEPREVVIFYGASNPRSALVKRLTEESMRKLEIDGEVKLVKSPDFELKNFEYVATGDV 180
KE+ PR+ +I YG SNP+SA +K T++ +++++I G+V+LVKSPDFELK FEYV+TGDV
Sbjct: 121 KELNPRKTIILYGRSNPKSAEIKIATQKKLKEIKIKGKVRLVKSPDFELKKFEYVSTGDV 180
Query: 181 GIIEKAKHVVDLPSYASILIKQNPMEFKEMLNILDERLK 219
GII ++V++ S+ S ++ +NP++FKEML+ILDERLK
Sbjct: 181 GIIRSVPYLVNIFSHISRILNKNPIDFKEMLDILDERLK 219
>sp|Q58345|Y935_METJA HYPOTHETICAL PROTEIN MJ0935 >gi|2128586|pir||G64416 hypothetical
protein MJ0935 - Methanococcus jannaschii
>gi|1499770|gb|AAB98940.1| (U67537) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 208
Score = 132 bits (330), Expect = 2e-30
Identities = 83/206 (40%), Positives = 126/206 (60%), Gaps = 8/206 (3%)
Query: 4 LKEAYMDLKFLLNRGYRKKVALNFVCNHYRLPSLYRHFLARCVFSDYWILEVR---EKAS 60
+++A D K+L+NRGY+K VALNFV NHY+L R + R SD I + +K
Sbjct: 3 IEKAKEDFKYLINRGYKKDVALNFVANHYKLSKEDRLKIIRTTHSDKEIKLTKRKLKKLK 62
Query: 61 SCKGEVLGVDGFNVLITIESLMNG-EAIRCEDWIIRDLK-YQGKYRISEKTEESIRLMLL 118
KG+ + +DGFNVLI++E+L+ G + + C+D I RD + GKY+I+E ++++I L+L
Sbjct: 63 DFKGKTIYIDGFNVLISLEALIKGNKIVLCDDNIYRDFENVYGKYKINEYSDKAISLLLE 122
Query: 119 AIKEVEPREVVIFYGASNPRSALVKRLTEESMRKLEIDGEVKLVKSPDFELKNFEYVATG 178
+K + VI+ A +S ++ + E M+ I+GEV VK+ D+ELKN E VAT
Sbjct: 123 ILKHYNIK-AVIYLDAQVSKSGILAKKIREKMKAFSIEGEVFCVKNCDYELKNKEVVATS 181
Query: 179 DVGII--EKAKHVVDLPSYASILIKQ 202
D II E K+VVDL + A +K+
Sbjct: 182 DSVIIKSENVKYVVDLIAEAIEYLKK 207
>gb|AAK40670.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 213
Score = 73.7 bits (178), Expect = 2e-12
Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 5 KEAYMDLKFLLNRGYRKKVALNFVCNHYRLPSLYRHFLARCVFSDYWILEVREKASSCKG 64
+EAY+D K+ LNR Y +KV L+ + Y L SL R L RCV SD I ++ K ++ +
Sbjct: 8 REAYLDYKYFLNRDYSRKVVLDIIAAKYNLSSLERLLLYRCVHSDKEIEIIKGKINNEER 67
Query: 65 EVLGVDGFNVLIT-IESLMNGEAIRCEDWIIRDLKYQGKYRISEKTEESIRLM 116
EV+ +DG+N+ +T I ++ N E C+D +RDL G+++ SE +++ L+
Sbjct: 68 EVV-LDGYNLALTLISAINNDELYLCDDGFLRDLGL-GRHKSSEIISDTLILI 118
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77276923
Number of Sequences: 2977
Number of extensions: 3023709
Number of successful extensions: 7344
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7339
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 189,106,746
effective HSP length: 55
effective length of query: 164
effective length of database: 156,189,961
effective search space: 25615153604
effective search space used: 25615153604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)