BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2060 (PAB2060) DE:Hypothetical protein
         (165 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75159 hypothetical protein PAB2060 - Pyrococcus abyssi (st...   356  1e-97
pir||C71199 hypothetical protein PH1864 - Pyrococcus horikoshii ...   295  2e-79
pir||F71176 hypothetical protein PH1693 - Pyrococcus horikoshii ...    71  8e-12
pir||D75165 hypothetical protein PAB0321 - Pyrococcus abyssi (st...    70  2e-11

>pir||B75159 hypothetical protein PAB2060 - Pyrococcus abyssi (strain Orsay)
           >gi|5457863|emb|CAB49353.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 165
           
 Score =  356 bits (903), Expect = 1e-97
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MRFKPKPFTKPVKFKCKFCLDCCKGRHVYLTLKDIKRLIDAGKDPQEFLTISIEGNKIRF 60
           MRFKPKPFTKPVKFKCKFCLDCCKGRHVYLTLKDIKRLIDAGKDPQEFLTISIEGNKIRF
Sbjct: 1   MRFKPKPFTKPVKFKCKFCLDCCKGRHVYLTLKDIKRLIDAGKDPQEFLTISIEGNKIRF 60

Query: 61  VLSVREWDLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWL 120
           VLSVREWDLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWL
Sbjct: 61  VLSVREWDLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWL 120

Query: 121 YYDENCPGINNKEGEEITPEQILKLGIEFERELEETTIDNVLDIL 165
           YYDENCPGINNKEGEEITPEQILKLGIEFERELEETTIDNVLDIL
Sbjct: 121 YYDENCPGINNKEGEEITPEQILKLGIEFERELEETTIDNVLDIL 165


>pir||C71199 hypothetical protein PH1864 - Pyrococcus horikoshii
           >gi|3258303|dbj|BAA30986.1| (AP000007) 170aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 170
           
 Score =  295 bits (747), Expect = 2e-79
 Identities = 134/165 (81%), Positives = 145/165 (87%)

Query: 1   MRFKPKPFTKPVKFKCKFCLDCCKGRHVYLTLKDIKRLIDAGKDPQEFLTISIEGNKIRF 60
           MRFKP+PF KPVKFKCKFCLDCCKGRHVYLTL DIKRLIDAG DPQ+FLTISIE  KIRF
Sbjct: 4   MRFKPRPFVKPVKFKCKFCLDCCKGRHVYLTLNDIKRLIDAGYDPQDFLTISIEDGKIRF 63

Query: 61  VLSVREWDLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWL 120
           VLSVREWDLGCVFQDPETGLC VHPHRPLICRIYPFMVSKKPLG++GEK  E     FWL
Sbjct: 64  VLSVREWDLGCVFQDPETGLCKVHPHRPLICRIYPFMVSKKPLGIKGEKKFEINGKSFWL 123

Query: 121 YYDENCPGINNKEGEEITPEQILKLGIEFERELEETTIDNVLDIL 165
           YYDENCPGIN+++G+ ITPE+ILKLGI+FE ELE T +D  L IL
Sbjct: 124 YYDENCPGINDEDGDTITPEEILKLGIKFEEELEATDLDGFLKIL 168


>pir||F71176 hypothetical protein PH1693 - Pyrococcus horikoshii
           >gi|3258122|dbj|BAA30805.1| (AP000007) 141aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 141
           
 Score = 71.0 bits (171), Expect = 8e-12
 Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 17/130 (13%)

Query: 13  KFKC-KFCLDCCKGRHVYLTLKDIKRLIDAGKDPQEFLTIS---IEGNK-IRFVLSVREW 67
           +FKC   C  CC    + L  +DI+R+   G D   F+  +     G K + + L  R +
Sbjct: 24  RFKCLDNCGKCCIENDIPLREEDIERIKKLGYDEDYFVDFTKMVYRGPKFLGYTLKKRPF 83

Query: 68  DLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWLYYDENCP 127
           D  CVF DPET  C ++ HRPL CR+YPF + +   G E E  +   D          CP
Sbjct: 84  DNACVFLDPETKKCRIYEHRPLACRLYPFALVRH--GDELEIYVRNVD----------CP 131

Query: 128 GINNKEGEEI 137
           GIN+ EG  I
Sbjct: 132 GINHPEGVTI 141


>pir||D75165 hypothetical protein PAB0321 - Pyrococcus abyssi (strain Orsay)
           >gi|5457913|emb|CAB49403.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 142
           
 Score = 69.9 bits (168), Expect = 2e-11
 Identities = 44/130 (33%), Positives = 64/130 (48%), Gaps = 17/130 (13%)

Query: 13  KFKC-KFCLDCCKGRHVYLTLKDIKRLIDAGKDPQEFLTIS---IEGNK-IRFVLSVREW 67
           +FKC   C  CC    + L  +DI+R+   G D   F+  +     G K + + +  R +
Sbjct: 25  RFKCLDNCGLCCIENDIPLREEDIERIKSLGYDEDYFVDFTKMVYRGPKFLGYAMKKRPF 84

Query: 68  DLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWLYYDENCP 127
           D  CVF DPET  C ++ HRPL CR+YPF +            ++ +D       + NCP
Sbjct: 85  DDACVFLDPETKRCRIYEHRPLACRLYPFAL------------VKHRDYLEIYVRNVNCP 132

Query: 128 GINNKEGEEI 137
           GIN+ EG  I
Sbjct: 133 GINHPEGVPI 142


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.146    0.464 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70424146
Number of Sequences: 2977
Number of extensions: 3066815
Number of successful extensions: 5417
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5411
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 189,106,746
effective HSP length: 46
effective length of query: 119
effective length of database: 161,576,344
effective search space: 19227584936
effective search space used: 19227584936
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)