BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2061 (SRP19) DE:signal recognition particle, subunit SRP19,
putative
         (99 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75158 probable signal recognition particle, chain srp19 PA...   194  2e-49
pir||C71198 hypothetical protein PHS054 - Pyrococcus horikoshii ...   156  4e-38

>pir||G75158 probable signal recognition particle, chain srp19 PAB2061 -
          Pyrococcus abyssi (strain Orsay)
          >gi|5457860|emb|CAB49350.1| (AJ248284) signal
          recognition particle, subunit SRP19, putative
          [Pyrococcus abyssi]
          Length = 99
          
 Score =  194 bits (488), Expect = 2e-49
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MSKFVIWTSELDSRLSKKYGRVVPRNLAVERPSIEEIEEAAKSLGFKVLQVEREKLNPKL 60
          MSKFVIWTSELDSRLSKKYGRVVPRNLAVERPSIEEIEEAAKSLGFKVLQVEREKLNPKL
Sbjct: 1  MSKFVIWTSELDSRLSKKYGRVVPRNLAVERPSIEEIEEAAKSLGFKVLQVEREKLNPKL 60

Query: 61 SGIDEDLRTYGRIIIESPYGKAKTLKIIAQKIRELRRRR 99
          SGIDEDLRTYGRIIIESPYGKAKTLKIIAQKIRELRRRR
Sbjct: 61 SGIDEDLRTYGRIIIESPYGKAKTLKIIAQKIRELRRRR 99


>pir||C71198 hypothetical protein PHS054 - Pyrococcus horikoshii
          >gi|3258295|dbj|BAA30978.1| (AP000007) 99aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 99
          
 Score =  156 bits (391), Expect = 4e-38
 Identities = 70/99 (70%), Positives = 90/99 (90%)

Query: 1  MSKFVIWTSELDSRLSKKYGRVVPRNLAVERPSIEEIEEAAKSLGFKVLQVEREKLNPKL 60
          M +FV+W  ELDSRLS+KYGR++P+NLA+E+PS++EI E A++L  K+++V+REKLNP+L
Sbjct: 1  MGRFVVWPCELDSRLSRKYGRIIPKNLAIEKPSLDEIIEVAETLNLKIVEVDREKLNPRL 60

Query: 61 SGIDEDLRTYGRIIIESPYGKAKTLKIIAQKIRELRRRR 99
          SGIDE+LRTYGRIIIESPYGK KTL++IAQKIRE RRRR
Sbjct: 61 SGIDEELRTYGRIIIESPYGKVKTLRLIAQKIREFRRRR 99


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.136    0.368 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32480372
Number of Sequences: 2977
Number of extensions: 1114934
Number of successful extensions: 4021
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4019
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 189,106,746
effective HSP length: 56
effective length of query: 43
effective length of database: 155,591,474
effective search space: 6690433382
effective search space used: 6690433382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 158 (66.0 bits)