BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2063 (PAB2063) DE:Hypothetical protein
         (174 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75158 hypothetical protein PAB2063 - Pyrococcus abyssi (st...   342  2e-93
pir||A71198 hypothetical protein PH1855 - Pyrococcus horikoshii ...   301  4e-81

>pir||E75158 hypothetical protein PAB2063 - Pyrococcus abyssi (strain Orsay)
           >gi|5457858|emb|CAB49348.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 174
           
 Score =  342 bits (867), Expect = 2e-93
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MSIRKKVCRIIGKRKLVLMARKEELSHNIKYISKVPVKIVMDREFLKVKPETSLFELISM 60
           MSIRKKVCRIIGKRKLVLMARKEELSHNIKYISKVPVKIVMDREFLKVKPETSLFELISM
Sbjct: 1   MSIRKKVCRIIGKRKLVLMARKEELSHNIKYISKVPVKIVMDREFLKVKPETSLFELISM 60

Query: 61  FTSEETSAVVVDDDGKLIGFITMKDLLHYFVPPRKYSIAGFGMLKKYVLNRATRVEDVMI 120
           FTSEETSAVVVDDDGKLIGFITMKDLLHYFVPPRKYSIAGFGMLKKYVLNRATRVEDVMI
Sbjct: 61  FTSEETSAVVVDDDGKLIGFITMKDLLHYFVPPRKYSIAGFGMLKKYVLNRATRVEDVMI 120

Query: 121 RRPIVIGVDDDLGQAIKLMVETGKHHLPVIDKDRRVHGILEVKDIIRLIRIVSS 174
           RRPIVIGVDDDLGQAIKLMVETGKHHLPVIDKDRRVHGILEVKDIIRLIRIVSS
Sbjct: 121 RRPIVIGVDDDLGQAIKLMVETGKHHLPVIDKDRRVHGILEVKDIIRLIRIVSS 174


>pir||A71198 hypothetical protein PH1855 - Pyrococcus horikoshii
           >gi|3258293|dbj|BAA30976.1| (AP000007) 172aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 172
           
 Score =  301 bits (762), Expect = 4e-81
 Identities = 147/172 (85%), Positives = 167/172 (96%)

Query: 3   IRKKVCRIIGKRKLVLMARKEELSHNIKYISKVPVKIVMDREFLKVKPETSLFELISMFT 62
           ++KK+ RIIGKRKLVLM+R+EELS+NIKYISKVPV+IVMD++FLKV+PET LF+LIS F+
Sbjct: 1   MKKKILRIIGKRKLVLMSRREELSYNIKYISKVPVRIVMDKDFLKVRPETPLFDLISRFS 60

Query: 63  SEETSAVVVDDDGKLIGFITMKDLLHYFVPPRKYSIAGFGMLKKYVLNRATRVEDVMIRR 122
           SEETSAVVVDD+GKLIGFITMKDLLHYFVPPR+YSIAGFGMLKKY L+RATRVED+MIRR
Sbjct: 61  SEETSAVVVDDEGKLIGFITMKDLLHYFVPPRRYSIAGFGMLKKYTLSRATRVEDIMIRR 120

Query: 123 PIVIGVDDDLGQAIKLMVETGKHHLPVIDKDRRVHGILEVKDIIRLIRIVSS 174
           PIVI V+DDLGQAIKLMVETGKHHLPVID++RRVHG+LEVKDIIRLIRIVSS
Sbjct: 121 PIVINVNDDLGQAIKLMVETGKHHLPVIDRERRVHGLLEVKDIIRLIRIVSS 172


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.144    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59062584
Number of Sequences: 2977
Number of extensions: 2288329
Number of successful extensions: 7252
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7250
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 189,106,746
effective HSP length: 54
effective length of query: 120
effective length of database: 156,788,448
effective search space: 18814613760
effective search space used: 18814613760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 162 (67.5 bits)