BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2064 (PAB2064) DE:Hypothetical protein
         (141 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75158 hypothetical protein PAB2064 - Pyrococcus abyssi (st...   285  1e-76
pir||H71197 hypothetical protein PH1854 - Pyrococcus horikoshii ...   180  9e-45

>pir||D75158 hypothetical protein PAB2064 - Pyrococcus abyssi (strain Orsay)
           >gi|5457857|emb|CAB49347.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 141
           
 Score =  285 bits (722), Expect = 1e-76
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MLSRLENIVSAVNKLNSITDEDIIMAVRKMKGRITCPYCKSPNIVKIGYIMRSGNFKIQR 60
           MLSRLENIVSAVNKLNSITDEDIIMAVRKMKGRITCPYCKSPNIVKIGYIMRSGNFKIQR
Sbjct: 1   MLSRLENIVSAVNKLNSITDEDIIMAVRKMKGRITCPYCKSPNIVKIGYIMRSGNFKIQR 60

Query: 61  YKCKNCNRTFTELDGTPLKGAHSLKDIVIVAYLTLDLKLPPSSIAKILPINRPKLYRAYK 120
           YKCKNCNRTFTELDGTPLKGAHSLKDIVIVAYLTLDLKLPPSSIAKILPINRPKLYRAYK
Sbjct: 61  YKCKNCNRTFTELDGTPLKGAHSLKDIVIVAYLTLDLKLPPSSIAKILPINRPKLYRAYK 120

Query: 121 RVITNKEFFRKLIYILLKDES 141
           RVITNKEFFRKLIYILLKDES
Sbjct: 121 RVITNKEFFRKLIYILLKDES 141


>pir||H71197 hypothetical protein PH1854 - Pyrococcus horikoshii
           >gi|3258292|dbj|BAA30975.1| (AP000007) 140aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 140
           
 Score =  180 bits (451), Expect = 9e-45
 Identities = 81/140 (57%), Positives = 110/140 (77%)

Query: 1   MLSRLENIVSAVNKLNSITDEDIIMAVRKMKGRITCPYCKSPNIVKIGYIMRSGNFKIQR 60
           M  RL+ I   +NKL SI +EDII A+RK+  ++TCPYC S ++VKIG+I R  N KIQR
Sbjct: 1   MKGRLKEITEEINKLTSIPNEDIISAIRKINKKVTCPYCNSDHVVKIGFIYRRNNIKIQR 60

Query: 61  YKCKNCNRTFTELDGTPLKGAHSLKDIVIVAYLTLDLKLPPSSIAKILPINRPKLYRAYK 120
           +KC+ C +TF+ELDGTPLKG HSLKDI++VAYL L L +PPSSI+++L INR ++YR Y+
Sbjct: 61  FKCQKCGKTFSELDGTPLKGVHSLKDIILVAYLVLMLGMPPSSISRVLGINRSRVYRMYE 120

Query: 121 RVITNKEFFRKLIYILLKDE 140
           R+  +K+FFR+L+ ILL D+
Sbjct: 121 RITGHKKFFRELLNILLDDQ 140


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.141    0.404 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49106162
Number of Sequences: 2977
Number of extensions: 1929193
Number of successful extensions: 5802
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5800
Number of HSP's gapped (non-prelim): 2
length of query: 141
length of database: 189,106,746
effective HSP length: 52
effective length of query: 89
effective length of database: 157,985,422
effective search space: 14060702558
effective search space used: 14060702558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)