BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2065 (PAB2065) DE:Hypothetical protein
(218 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75158 hypothetical protein PAB2065 - Pyrococcus abyssi (st... 431 e-120
pir||G71197 hypothetical protein PH1853 - Pyrococcus horikoshii ... 308 4e-83
pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (st... 87 2e-16
pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii ... 80 2e-14
pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (st... 74 2e-12
pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii ... 72 6e-12
>pir||C75158 hypothetical protein PAB2065 - Pyrococcus abyssi (strain Orsay)
>gi|5457856|emb|CAB49346.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 218
Score = 431 bits (1096), Expect = e-120
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MEIDEIVNREKISVLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQ 60
MEIDEIVNREKISVLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQ
Sbjct: 1 MEIDEIVNREKISVLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQ 60
Query: 61 AELIGIDTKIIDSSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGK 120
AELIGIDTKIIDSSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGK
Sbjct: 61 AELIGIDTKIIDSSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGK 120
Query: 121 FFINIQIGIEGLMNVFERKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPM 180
FFINIQIGIEGLMNVFERKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPM
Sbjct: 121 FFINIQIGIEGLMNVFERKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPM 180
Query: 181 LRTIFPVVIRLMNDGRSFSIMKSVFPNIKGSVGTIKWE 218
LRTIFPVVIRLMNDGRSFSIMKSVFPNIKGSVGTIKWE
Sbjct: 181 LRTIFPVVIRLMNDGRSFSIMKSVFPNIKGSVGTIKWE 218
>pir||G71197 hypothetical protein PH1853 - Pyrococcus horikoshii
>gi|3258291|dbj|BAA30974.1| (AP000007) 218aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 218
Score = 308 bits (780), Expect = 4e-83
Identities = 143/215 (66%), Positives = 189/215 (87%)
Query: 1 MEIDEIVNREKISVLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQ 60
MEI E++ +EKISVL+EYTS DIIGP LF +L I+E Y +DA+IIITDFLD LPI +Y
Sbjct: 3 MEISEVIGKEKISVLVEYTSDDIIGPTLFAMLNKIRETYREDALIIITDFLDTLPICRYH 62
Query: 61 AELIGIDTKIIDSSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGK 120
AELIG+ T++ID SAIIKVGG+I+SGNV+YKIPISSYPVYKTLYEE+L+K+L+ ++
Sbjct: 63 AELIGVRTEVIDKSAIIKVGGKINSGNVLYKIPISSYPVYKTLYEETLEKVLESVDTHRG 122
Query: 121 FFINIQIGIEGLMNVFERKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPM 180
FF+N+QIGIE LMN+FE+KE++EQIHDIGEYIVTK++DIRD++F+N++ L++ SI++L +
Sbjct: 123 FFVNVQIGIENLMNIFEKKELIEQIHDIGEYIVTKNKDIRDLVFINVESLRNTSIEVLSL 182
Query: 181 LRTIFPVVIRLMNDGRSFSIMKSVFPNIKGSVGTI 215
LRTIFPVV++LMN+GRSF + KSV P+++GSVGTI
Sbjct: 183 LRTIFPVVVKLMNNGRSFVVEKSVLPSLRGSVGTI 217
>pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (strain Orsay)
>gi|5458663|emb|CAB50150.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 209
Score = 86.6 bits (211), Expect = 2e-16
Identities = 60/212 (28%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 3 IDEIVNREKIS--VLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQ 60
+ EI N K LIEY S L +L +EK I+I D D+L +++
Sbjct: 2 LKEIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEK---GYKIVIFDVFDSLIVYRKM 58
Query: 61 AELIGIDTKIIDSSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGK 120
AEL+G DT + + ++KVGGR++ GNV+ K+ ++ Y ++ + EE+++++ +
Sbjct: 59 AELLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKT---- 114
Query: 121 FFINIQIGIEGLMNVFERKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPM 180
I I +G E +++++ +E + + + + D+ + F+N D +K+ + ILPM
Sbjct: 115 --IVIPLGTEKVLSLYPFREQLSFTNFLA--LRVGDKRKKAFHFINTDLVKAVAPQILPM 170
Query: 181 LRTIFPVVIRLMNDGR--SFSIMKSVFPNIKG 210
L F V+RL G+ ++KS+ P + G
Sbjct: 171 LEESFTTVMRLKKYGKVEKLIVVKSLNPKLDG 202
>pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii
>gi|3257271|dbj|BAA29954.1| (AP000003) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 80.4 bits (195), Expect = 2e-14
Identities = 57/212 (26%), Positives = 107/212 (49%), Gaps = 13/212 (6%)
Query: 3 IDEIVNREKIS--VLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQ 60
++++ + K +L EY S P LF + IK ++I D D+L I+ Q
Sbjct: 4 LEDLFEKSKFGELILFEYNSTT---PLLFIVYPLIKWAREKGYPLVIFDIFDSLTIYTKQ 60
Query: 61 AELIGIDTKIIDSSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGK 120
AE++GI K+ + + I+K+GGR++ GN+I KI I Y ++ E++L+K +
Sbjct: 61 AEMLGIKDKLYEGANIVKIGGRMNLGNIILKISIIEYGPFEKTLEDTLEKAYG----ERE 116
Query: 121 FFINIQIGIEGLMNVFERKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPM 180
I+I +G E + + + ++ + + + T DR + F+N+D L+ S + P+
Sbjct: 117 NVISIVLGTEKIFSFYPFRDQFMFSNFLA--LKTGDRRRKAFYFVNVDLLEKISPPMGPL 174
Query: 181 LRTIFPVVIRLMNDGR--SFSIMKSVFPNIKG 210
L F V++L + ++KS+ P + G
Sbjct: 175 LEEEFTTVVKLTKEDNKIKMKVIKSLNPELDG 206
>pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (strain Orsay)
>gi|5457713|emb|CAB49204.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 73.7 bits (178), Expect = 2e-12
Identities = 52/179 (29%), Positives = 101/179 (56%), Gaps = 10/179 (5%)
Query: 13 SVLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQAELIGIDTKIID 72
++L+E+ S+ I G GL+ ILK + + + +II D LD L +++ Q EL+G+D I++
Sbjct: 20 TLLLEHDSQIIPGIGLYYILKWARARGYE---VIIYDILDTLRVYRIQLELLGLDPSIVE 76
Query: 73 SSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGKFFINIQIGIEGL 132
+ +IK GGR GNV+ ++ V ++ E+ +K+ + + + + I +G+E L
Sbjct: 77 YAKVIKEGGRFYVGNVVKRLS----EVGVSVREKEYEKVEEDLARDHENIVTIVLGLEKL 132
Query: 133 MNVFERK-EIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPMLRTIFPVVIR 190
+ + K +IM ++ I ++ + DR I +N+D +K + ++P+L I VI+
Sbjct: 133 FLLSQSKQDIMALLNSILKH--SGDRRRLTIYTVNVDIVKVATPFVIPLLEEIATTVIK 189
>pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii
>gi|3256926|dbj|BAA29609.1| (AP000002) 226aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 226
Score = 71.8 bits (173), Expect = 6e-12
Identities = 53/207 (25%), Positives = 107/207 (51%), Gaps = 15/207 (7%)
Query: 13 SVLIEYTSRDIIGPGLFRILKSIKEKYGDDAIIIITDFLDALPIHKYQAELIGIDTKIID 72
S+LIE+ S G++ ++ KEK + I++ D LD L I+ ++ G+DT IID
Sbjct: 18 SILIEFNSVSFPSFGVYSLINWAKEKGYN---IVVVDVLDTLKIYMGHEKIAGLDTGIID 74
Query: 73 SSAIIKVGGRISSGNVIYKIPISSYPVYKTLYEESLKKLLDGMNPRGKFFINIQIGIEGL 132
+IK+GGRI G ++ +I I+ + L E L +L + + + I I +GIE +
Sbjct: 75 DVTVIKIGGRIEIGKILARILITE----EKLLENELTRLCKEI--KKEKTIIIILGIEKV 128
Query: 133 MNVFE--RKEIMEQIHDIGEYIVTKDRDIRDIMFLNIDYLKSRSIDILPMLRTIFPVVIR 190
++++ +++ I+ I +I + + + F+N+D + +L +L VI+
Sbjct: 129 LSLYSTYTLDVLSLINFILSFIGEEWK--KSFYFINVDMMSHLPFPVLQLLEEFATTVIK 186
Query: 191 LMNDGR--SFSIMKSVFPNIKGSVGTI 215
++ G ++++K++ + G G +
Sbjct: 187 IVKKGSVLHYTVLKALNVELDGFEGRV 213
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.145 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75429234
Number of Sequences: 2977
Number of extensions: 3060567
Number of successful extensions: 8089
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8082
Number of HSP's gapped (non-prelim): 6
length of query: 218
length of database: 189,106,746
effective HSP length: 54
effective length of query: 164
effective length of database: 156,788,448
effective search space: 25713305472
effective search space used: 25713305472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)