BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2066 (htrII) DE:SENSORY RHODOPSIN II TRANSDUCER (HTR-II)
(METHYL-ACCEPTING PHOTOTAXIS PROTEIN II) (MPP-II)
(501 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-acc... 934 0.0
pir||F71197 probable methyl-accepting chemotaxis protein - Pyroc... 797 0.0
pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii ... 430 e-119
pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 -... 415 e-115
pir||D71155 probable methyl-accepting chemotaxis protein - Pyroc... 298 7e-80
pir||H75006 methyl-accepting chemotaxis related protein PAB1308 ... 289 4e-77
pir||A72254 methyl-accepting chemotaxis protein - Thermotoga mar... 200 3e-50
dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [B... 190 2e-47
dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [... 189 5e-47
sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H... 184 2e-45
sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >g... 182 8e-45
dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [... 176 3e-43
dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [... 176 4e-43
pir||C72291 methyl-accepting chemotaxis protein - Thermotoga mar... 175 7e-43
pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus ... 175 1e-42
gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium s... 175 1e-42
sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >g... 173 3e-42
sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H... 170 3e-41
pir||T44262 transducer protein htrVI [similarity] - Halobacteriu... 170 3e-41
dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [... 169 4e-41
dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [... 168 1e-40
gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium... 168 2e-40
sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|112... 167 3e-40
pir||T48840 transducer protein basT [validated] - Halobacterium ... 166 4e-40
gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium s... 166 4e-40
gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium s... 166 5e-40
sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 166 6e-40
pir||F72288 methyl-accepting chemotaxis protein - Thermotoga mar... 164 2e-39
sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|4777... 164 2e-39
pir||F70028 transmembrane receptor taxis protein homolog yvaQ - ... 164 2e-39
pir||T44989 transducer protein trII [imported] - Haloarcula vall... 163 3e-39
pir||A72428 methyl-accepting chemotaxis protein - Thermotoga mar... 161 2e-38
pir||G72316 methyl-accepting chemotaxis protein - Thermotoga mar... 160 3e-38
pir||T44938 transducer protein htpV [similarity] - Halobacterium... 160 3e-38
sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 160 4e-38
pir||E72379 methyl-accepting chemotaxis protein - Thermotoga mar... 159 5e-38
gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium... 159 6e-38
sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|1127... 158 1e-37
pir||T44606 transducer protein htpIV [similarity] - Halobacteriu... 157 2e-37
pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - B... 155 9e-37
gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archae... 155 9e-37
gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archae... 154 2e-36
gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium sa... 154 2e-36
dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [... 154 2e-36
dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [... 154 2e-36
gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium... 152 6e-36
sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|112... 151 1e-35
pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synech... 151 2e-35
gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium s... 151 2e-35
gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium s... 150 3e-35
dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [... 149 7e-35
sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >g... 148 9e-35
gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus... 148 2e-34
sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >g... 147 2e-34
dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein Tl... 147 3e-34
gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis p... 147 3e-34
pir||T44253 transducer protein htrVIII [validated] - Halobacteri... 146 4e-34
gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium... 146 5e-34
pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 ... 145 8e-34
pir||T44597 transducer protein htpVI [similarity] - Halobacteriu... 145 1e-33
gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium s... 145 1e-33
sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 144 2e-33
pir||B71160 probable methyl-accepting chemotaxis protein - Pyroc... 143 3e-33
gb|AAG34155.1|AF312877_1 (AF312877) methyl-accepting chemotaxis ... 142 9e-33
pir||C83012 probable chemotaxis transducer PA5072 [imported] - P... 142 9e-33
sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 140 4e-32
gi|10954729 hypothetical chemoreceptor gene~similar to orf2 gene... 140 4e-32
pir||F75590 methyl-accepting chemotaxis protein - Deinococcus ra... 139 5e-32
gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium... 139 5e-32
gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium... 139 5e-32
pir||T44849 transducer protein car [validated] - Halobacterium s... 139 6e-32
dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [... 139 6e-32
pir||T44978 transducer protein hemAT [validated] - Halobacterium... 138 1e-31
gb|AAC46419.1| (U81828) methylation accepting chemotaxis protein... 138 1e-31
pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported... 138 1e-31
pir||H82379 methyl-accepting chemotaxis protein VCA1092 [importe... 138 2e-31
gb|AAC46420.1| (AF036168) putative methyl accepting chemotaxis p... 138 2e-31
pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyroco... 138 2e-31
pir||D82077 methyl-accepting chemotaxis protein VC2439 [imported... 137 2e-31
pir||G82490 methyl-accepting chemotaxis protein VCA0176 [importe... 137 3e-31
pir||T44964 transducer protein car [validated] - Halobacterium s... 136 4e-31
dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [... 136 5e-31
pir||H83106 chemotactic transducer PctC PA4307 [imported] - Pseu... 136 7e-31
pir||A83451 aerotaxis receptor Aer PA1561 [imported] - Pseudomon... 135 9e-31
pir||E83067 probable chemotaxis transducer PA4633 [imported] - P... 134 2e-30
pir||H82402 methyl-accepting chemotaxis protein VCA0906 [importe... 134 2e-30
pir||F82392 methyl-accepting chemotaxis protein VCA0988 [importe... 134 2e-30
pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synech... 134 2e-30
pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseu... 134 2e-30
gi|10954753 similar to mcpC gene in Rhizobium leguminosarum [Agr... 134 3e-30
sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOT... 134 3e-30
pir||A83314 probable chemotaxis transducer PA2654 [imported] - P... 134 3e-30
gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [P... 133 5e-30
gb|AAA23567.1| (M13463) sensory transducer protein [Escherichia ... 132 6e-30
sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 132 6e-30
dbj|BAA23410.1| (D86947) chemotactic transducer [Pseudomonas aer... 132 6e-30
gb|AAG13635.1| (AF036940) putative chemotaxis protein [Ralstonia... 132 6e-30
sp|P07018|MCP4_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN IV (MCP... 132 8e-30
gb|AAB50497.1| (U30319) DcrH [Desulfovibrio vulgaris] 132 8e-30
gb|AAD34887.1|AF141674_1 (AF141674) putative chemotaxis chemorec... 132 8e-30
pir||C83440 probable chemotaxis transducer PA1646 [imported] - P... 132 8e-30
pir||H83324 probable chemotaxis transducer PA2573 [imported] - P... 132 8e-30
dbj|BAA23413.1| (D86947) chemotactic transducer [Pseudomonas aer... 131 1e-29
sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|7... 131 2e-29
sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ pr... 131 2e-29
pir||H82503 methyl-accepting chemotaxis protein VCA0068 [importe... 131 2e-29
pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported... 130 3e-29
pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] ... 130 4e-29
pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported... 129 5e-29
gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [T... 129 5e-29
pir||E75590 methyl-accepting chemotaxis-related protein - Deinoc... 129 5e-29
pir||F82382 methyl-accepting chemotaxis protein VCA1069 [importe... 129 5e-29
sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDU... 129 7e-29
pir||S72163 methyl-accepting chemotaxis protein mcpA - Rhizobium... 129 7e-29
pir||E82395 methyl-accepting chemotaxis protein VCA0974 [importe... 129 7e-29
pir||E83325 probable chemotaxis transducer PA2561 [imported] - P... 129 9e-29
pir||B82351 methyl-accepting chemotaxis protein VC0216 [imported... 128 1e-28
emb|CAA70726.1| (Y09534) methyl-accepting chemotaxis proteins [R... 128 1e-28
pir||G82618 pilus biogenesis protein XF1953 [imported] - Xylella... 128 2e-28
pir||B83107 chemotactic transducer PctA PA4309 [imported] - Pseu... 127 2e-28
dbj|BAA23412.1| (D86947) chemotactic transducer [Pseudomonas aer... 127 2e-28
pir||H82143 methyl-accepting chemotaxis protein VC1898 [imported... 127 2e-28
pir||F83280 probable chemotaxis transducer PA2920 [imported] - P... 127 2e-28
pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported... 127 2e-28
pir||E82273 accessory colonization factor AcfB VC0840 [imported]... 127 3e-28
gb|AAA21387.1| (L25660) accessory colonization factor [Vibrio ch... 126 4e-28
gb|AAA82705.1| (U39068) AcfB [Vibrio cholerae] 126 4e-28
pir||F82342 methyl-accepting chemotaxis protein VC0282 [imported... 126 4e-28
gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis ... 126 6e-28
pir||G83313 probable chemotaxis transducer PA2652 [imported] - P... 125 8e-28
sp|P55652|Y4SI_RHISN PROBABLE CHEMORECEPTOR Y4SI (METHYL-ACCEPTI... 125 1e-27
pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported... 125 1e-27
pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported... 125 1e-27
gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis ... 124 2e-27
pir||JC4736 methyl-accepting chemotaxis protein B - Rhodobacter ... 123 3e-27
gi|10955066 mclA [Agrobacterium tumefaciens] >gi|8572698|gb|AAF7... 122 9e-27
pir||D82386 methyl-accepting chemotaxis protein VCA1034 [importe... 122 9e-27
gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis ... 122 1e-26
pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog ... 121 1e-26
sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|14... 121 2e-26
pir||C83080 probable chemotaxis transducer PA4520 [imported] - P... 120 3e-26
pir||D83297 probable chemotaxis transducer PA2788 [imported] - P... 120 3e-26
sp|P55439|Y4FA_RHISN PROBABLE CHEMORECEPTOR Y4FA (METHYL-ACCEPTI... 120 4e-26
sp|P43500|FRZC_MYXXA FRZCD PROTEIN (FRIZZY AGGREGATION PROTEIN F... 119 6e-26
pir||A83624 probable chemotaxis transducer PA0176 [imported] - P... 119 6e-26
pir||S56581 methyl-accepting chemotaxis protein I - Escherichia ... 119 8e-26
gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium s... 119 8e-26
pir||D75590 methyl-accepting chemotaxis protein - Deinococcus ra... 118 1e-25
pir||H83445 probable chemotaxis transducer PA1608 [imported] - P... 118 1e-25
gi|10954717 hypothetical chemoreceptor gene~similar to orf2 gene... 118 1e-25
sp|P35841|DCRA_DESVH CHEMORECEPTOR PROTEIN A >gi|282156|pir||A42... 117 2e-25
sp|P29486|TCPI_VIBCH TOXIN CORREGULATED PILUS BIOSYNTHESIS PROTE... 117 2e-25
pir||D82274 toxin co-regulated pilus biosynthesis protein I VC08... 117 3e-25
gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [T... 116 4e-25
pir||T03481 methyl-accepting chemotaxis protein - Rhodobacter ca... 116 4e-25
gb|AAG34154.1|AF312876_1 (AF312876) methyl-accepting chemotaxis ... 116 4e-25
pir||T03461 methyl-accepting chemotaxis protein mcpA - Rhodobact... 116 7e-25
pir||E82431 methyl-accepting chemotaxis protein VCA0663 [importe... 115 9e-25
pir||C83184 probable chemotaxis transducer PA3708 [imported] - P... 115 9e-25
pir||E83041 probable chemotaxis transducer PA4844 [imported] - P... 115 1e-24
pir||B82110 methyl-accepting chemotaxis protein VC2161 [imported... 115 1e-24
gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum] 114 2e-24
pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1... 114 2e-24
gi|10954934 Putative mcpA [Agrobacterium tumefaciens] >gi|649828... 113 3e-24
sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MC... 113 4e-24
pir||G82401 methyl-accepting chemotaxis protein VCA0923 [importe... 113 6e-24
pir||F81297 probable MCP-type signal transduction protein Cj1506... 112 1e-23
pir||A82134 methyl-accepting chemotaxis protein VC1967 [imported... 112 1e-23
gb|AAG34156.1|AF312878_1 (AF312878) methyl-accepting chemotaxis ... 111 2e-23
pir||T03424 probable methylation accepting chemotaxis protein mc... 111 2e-23
emb|CAB93675.1| (AJ404229) putative receptor protein [Rhodobacte... 109 8e-23
pir||H70184 methyl-accepting chemotaxis protein (mcp-5) homolog ... 108 2e-22
pir||E81444 probable methyl-accepting chemotaxis signal transduc... 107 2e-22
pir||H81431 methyl-accepting chemotaxis signal transduction prot... 106 4e-22
pir||B81251 probable methyl-accepting chemotaxis signal transduc... 105 1e-21
pir||E83032 probable chemotaxis transducer PA4915 [imported] - P... 104 2e-21
pir||B64530 methyl-accepting chemotaxis transducer (tlpC) - Heli... 101 2e-20
pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicoba... 101 2e-20
pir||B71975 methyl-accepting chemotaxis protein (MCP) - Helicoba... 101 2e-20
pir||C64532 methyl-accepting chemotaxis protein (tlpA) - Helicob... 101 2e-20
gb|AAF61289.1|AF064528_2 (AF064528) phototransducer; methyl-acce... 100 4e-20
pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) ... 100 4e-20
pir||H72552 hypothetical protein APE1708 - Aeropyrum pernix (str... 82 2e-14
pir||D70174 methyl-accepting chemotaxis protein (mcp-3) homolog ... 81 2e-14
dbj|BAA96489.1| (AB039333) chemotactic transducer CtpL [Pseudomo... 79 1e-13
gb|AAF78287.1|AF099662_1 (AF099662) merozoite surface protein 3b... 76 8e-13
emb|CAB40350.1| (AJ131892) Hyperion protein, 419 kD isoform [Gal... 75 2e-12
gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [Arabi... 75 2e-12
pir||B71603 RESA-H3 antigen PFB0915w - malaria parasite (Plasmod... 74 4e-12
dbj|BAA09069.1| (D50476) myosin heavy chain [Cyprinus carpio] 73 5e-12
pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|18509... 73 5e-12
dbj|BAA22069.1| (D89992) myosin heavy chain [Cyprinus carpio] 73 5e-12
emb|CAB65343.1| (AJ007010) liver stage antigen-3 [Plasmodium fal... 73 5e-12
pir||A59236 embryonic muscle myosin heavy chain - sea squirt (H... 72 2e-11
gi|7662216 KIAA0635 gene product [Homo sapiens] >gi|3327084|dbj|... 72 2e-11
pir||T22976 hypothetical protein F59A2.6 - Caenorhabditis elegan... 71 3e-11
gb|AAF53604.1| (AE003655) CLIP-190 gene product [alt 1] [Drosoph... 71 3e-11
pir||T13030 microtubule binding protein D-CLIP-190 - fruit fly ... 71 3e-11
gb|AAD13771.1| (AF097906) myosin heavy chain [Rana catesbeiana] 71 3e-11
gb|AAF61445.1|AF139055_1 (AF139055) nonmuscle myosin heavy chain... 71 3e-11
dbj|BAA36494.1| (AB022023) nonmuscle myosin heavy chain B [Bos t... 69 8e-11
>pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-accepting
phototaxis protein ii) (mpp-ii) PAB2066 - Pyrococcus
abyssi (strain Orsay) >gi|5457855|emb|CAB49345.1|
(AJ248284) SENSORY RHODOPSIN II TRANSDUCER (HTR-II)
(METHYL-ACCEPTING PHOTOTAXIS PROTEIN II) (MPP-II)
[Pyrococcus abyssi]
Length = 501
Score = 934 bits (2387), Expect = 0.0
Identities = 501/501 (100%), Positives = 501/501 (100%)
Query: 1 MKFGKKLVISIFTPLILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAIRETLENA 60
MKFGKKLVISIFTPLILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAIRETLENA
Sbjct: 1 MKFGKKLVISIFTPLILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAIRETLENA 60
Query: 61 KSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVS 120
KSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVS
Sbjct: 61 KSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVS 120
Query: 121 KIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILN 180
KIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILN
Sbjct: 121 KIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILN 180
Query: 181 SMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQE 240
SMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQE
Sbjct: 181 SMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQE 240
Query: 241 NITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKV 300
NITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKV
Sbjct: 241 NITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKV 300
Query: 301 IRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL 360
IRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL
Sbjct: 301 IRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL 360
Query: 361 AEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDV 420
AEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDV
Sbjct: 361 AEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDV 420
Query: 421 ESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNI 480
ESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNI
Sbjct: 421 ESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNI 480
Query: 481 IELRDIVKKLREAVEFIKVEG 501
IELRDIVKKLREAVEFIKVEG
Sbjct: 481 IELRDIVKKLREAVEFIKVEG 501
>pir||F71197 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3258290|dbj|BAA30973.1| (AP000007) 507aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 507
Score = 797 bits (2035), Expect = 0.0
Identities = 407/500 (81%), Positives = 470/500 (93%)
Query: 1 MKFGKKLVISIFTPLILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAIRETLENA 60
MKF +KL +SIF PL+LVV+TAIIIQNIAISDLYDNLEKTM+ V+ G S++ ++ T+E A
Sbjct: 4 MKFSRKLTLSIFIPLVLVVITAIIIQNIAISDLYDNLEKTMEAVRAGASIQTVQSTIEFA 63
Query: 61 KSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVS 120
KSQLK+TLW+SIGVM+IVA +SG +G R+MNS M+P++EMAK+AE IA+GKLS A E++S
Sbjct: 64 KSQLKKTLWMSIGVMTIVAGVSGVIGFRIMNSVMKPVSEMAKVAEEIADGKLSHAGELIS 123
Query: 121 KIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILN 180
+I+YRE DEIGKL+EGFRAIS +VLQTLE+IT+RMEKIS+GDV+++L +HAKGDFESILN
Sbjct: 124 RIKYREKDEIGKLLEGFRAISTEVLQTLEVITDRMEKISKGDVTEELTLHAKGDFESILN 183
Query: 181 SMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQE 240
SMRKTI LR LMKTVRDLA+TLE+RA+DL RISSEI+EA+NQVAEAIQQVS EAQRQQE
Sbjct: 184 SMRKTIVQLRNLMKTVRDLAVTLETRADDLARISSEITEAVNQVAEAIQQVSTEAQRQQE 243
Query: 241 NITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKV 300
NIT+IM+GMN+TADVTQRTV+AMEEFS VVNEV+SIAREGK+KGEKAISQV DIQ+AM+V
Sbjct: 244 NITQIMDGMNLTADVTQRTVEAMEEFSSVVNEVISIAREGKEKGEKAISQVGDIQNAMRV 303
Query: 301 IRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL 360
I QAVQEVAEMSKNVG+IINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL
Sbjct: 304 ISQAVQEVAEMSKNVGEIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL 363
Query: 361 AEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDV 420
AEESKEAAE+IR ILN+IQ+KVEKAVEETEKGVK+VD+SVDFL+ETVGYLMN+GELLDDV
Sbjct: 364 AEESKEAAERIREILNQIQDKVEKAVEETEKGVKIVDNSVDFLRETVGYLMNVGELLDDV 423
Query: 421 ESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNI 480
E KLQ +K+ELANTQEHVENAKKALENLAASA+ETTASAEEVSASA+EQASS+EEV+RNI
Sbjct: 424 EDKLQAVKSELANTQEHVENAKKALENLAASAEETTASAEEVSASAEEQASSLEEVRRNI 483
Query: 481 IELRDIVKKLREAVEFIKVE 500
+ELRDIVKKLREAVEFIKVE
Sbjct: 484 VELRDIVKKLREAVEFIKVE 503
>pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii
>gi|3256896|dbj|BAA29579.1| (AP000002) 739aa long
hypothetical chemotaxis protein [Pyrococcus horikoshii]
Length = 739
Score = 430 bits (1093), Expect = e-119
Identities = 225/471 (47%), Positives = 338/471 (70%), Gaps = 6/471 (1%)
Query: 34 YDNLEKTMKVVQTGGSVEAIRE-TLENAKSQLK---ETLWLSIGVMSIVAVISGALGM-R 88
Y +++T +V +E I E TL+ A S +K E ++ G+ +I+A+++ + M +
Sbjct: 270 YRRMKQTGWIVLATVPLEEITEPTLKAADSVVKDVSEMIYKGFGI-AIIAIVAMIVAMYK 328
Query: 89 LMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTL 148
+ S + P+ ++ A+++A GKL E V +I+Y E+DEIG LI+ F A+S+D++ TL
Sbjct: 329 VAGSILAPLEKLKMAAQALANGKLREVTEYVKEIRYLENDEIGALIQAFEAVSKDLVGTL 388
Query: 149 EIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRAN 208
IT+R+E+++EGD+++ L V AKG+ ++ ++ + LR + ++ D+A LE RAN
Sbjct: 389 TAITKRLERLAEGDLTNGLTVEAKGELRDLIEDIKSVTNTLRTSIGSLVDMANELEKRAN 448
Query: 209 DLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSG 268
L +IS++++EAINQV EAIQQVSVEAQRQQE I EI EGM + A ++ +V AMEEF G
Sbjct: 449 ALAQISNDVTEAINQVNEAIQQVSVEAQRQQETINEITEGMRLVAQTSEESVKAMEEFEG 508
Query: 269 VVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQ 328
V+EV+SIA EG KG+ A+ ++EDIQ M I + V +V+EMS+N+ +I N I IAEQ
Sbjct: 509 AVSEVVSIANEGSQKGDDALKRIEDIQHMMSRIEETVSKVSEMSRNIEEITNVITSIAEQ 568
Query: 329 TNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEE 388
TNLLALNAAIEAARAGE GRGFAVVAQE+R LAEESK+AA+ I+ I+++I +++++AVE
Sbjct: 569 TNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEA 628
Query: 389 TEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENL 448
T++GV V+ S + L++T+GYL NI LL + ++ ++K+++ TQE V+ + +ALENL
Sbjct: 629 TKEGVNVIGQSSETLRDTIGYLANIATLLQETSERMSEVKDQIVKTQEEVDKSLRALENL 688
Query: 449 AASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
AASA+ETTASAEEVS++ +EQ +S+EE++R ELRDIV+K+R + KV
Sbjct: 689 AASAEETTASAEEVSSAVEEQTASIEELRRAAQELRDIVEKMRGIIAKFKV 739
>pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 - Pyrococcus
abyssi (strain Orsay) >gi|5458968|emb|CAB50454.1|
(AJ248288) methyl-accepting chemotaxis protein (tlpC)
[Pyrococcus abyssi]
Length = 739
Score = 415 bits (1056), Expect = e-115
Identities = 206/429 (48%), Positives = 316/429 (73%), Gaps = 2/429 (0%)
Query: 71 SIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEI 130
++G + IVA++ + ++ ++T+ P+ ++ A+++AEG+L + E + +I+Y E DEI
Sbjct: 313 AVGFVIIVAIL--VVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEI 370
Query: 131 GKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLR 190
G LI+ F A+S+D++ TL I++++E+++EGD+S+ L V +G+ I+ +R R
Sbjct: 371 GALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFR 430
Query: 191 ELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMN 250
E + ++ ++A LE RAN L ++S +++EAINQV EAIQQVS+EAQRQQE I EI +GM
Sbjct: 431 ESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMR 490
Query: 251 ITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAE 310
+ A ++ +V AMEEFSG V EV+SIA EG KG++A+ ++EDIQ M I + V +VAE
Sbjct: 491 LVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAE 550
Query: 311 MSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEK 370
MS+N+ +I N I IAEQTNLLALNAAIEAARAGE GRGFAVVAQE+R LAEESK+AA+
Sbjct: 551 MSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADN 610
Query: 371 IRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNE 430
I+ I+++I +++++AVE T++GV V+ +S + L++T+GYL NI LL + ++ +K +
Sbjct: 611 IKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQ 670
Query: 431 LANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKL 490
+ TQE V+ A +ALENLAASA+ETTASAEEVS++ ++Q +++EE++R EL+D+V ++
Sbjct: 671 IVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRM 730
Query: 491 REAVEFIKV 499
R+ V KV
Sbjct: 731 RQIVGKFKV 739
>pir||D71155 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256846|dbj|BAA29529.1| (AP000002) 428aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 428
Score = 298 bits (756), Expect = 7e-80
Identities = 161/383 (42%), Positives = 259/383 (67%), Gaps = 4/383 (1%)
Query: 118 MVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVS-DDLKVHAKGDFE 176
+ S I YR + + +E +++ + +E I+ +E+I+ GD+S +D ++ G+
Sbjct: 37 IASYINYRTEGKAELPME-LEEYKKNLEKRIEEISVILERIAHGDLSVEDSEI--SGELA 93
Query: 177 SILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQ 236
I + K ++ L+ V++ A+ +++ A + +I+EA+ QVAEAI QVS EAQ
Sbjct: 94 KIREGIEKLRQSISGLVLNVKNAAIDVKNHAKVMKDNIEQIAEAVAQVAEAINQVSAEAQ 153
Query: 237 RQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQD 296
R+QENI+++ E M D+++ TV MEEF + E+ +A+EG +KG A +Q+E+I
Sbjct: 154 REQENISKMTETMRYINDISKETVSTMEEFEASMREMAQLAKEGGEKGRMAATQIEEISR 213
Query: 297 AMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQE 356
M++I + V+ VA+M KN+ +I N I+ IAEQTNLLALNAAIEAARAGE G+GFAVVA E
Sbjct: 214 MMQMIEETVRGVADMGKNIENITNVISSIAEQTNLLALNAAIEAARAGEAGKGFAVVADE 273
Query: 357 VRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGEL 416
+R LAEESK+AAE IR ++ +I +K+ ++VE T++G +VV S + +KE+V YL + E+
Sbjct: 274 IRKLAEESKKAAEDIRELIKQIGDKISESVEVTKQGAEVVGTSTEVIKESVNYLTQVAEM 333
Query: 417 LDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEV 476
++++E+K +++ ++ E +E K LENLAASA+ETTA+AEEVSA+A+EQ+S+++E+
Sbjct: 334 MEEMEAKASELREKVIQEGEKIEEGLKFLENLAASAEETTAAAEEVSAAAEEQSSALQEL 393
Query: 477 KRNIIELRDIVKKLREAVEFIKV 499
K ++ EL +V L E + K+
Sbjct: 394 KESVKELDRLVDVLMEHIGKFKL 416
>pir||H75006 methyl-accepting chemotaxis related protein PAB1308 - Pyrococcus
abyssi (strain Orsay) >gi|5459008|emb|CAB50494.1|
(AJ248288) METHYL-ACCEPTING CHEMOTAXIS RELATED PROTEIN
[Pyrococcus abyssi]
Length = 435
Score = 289 bits (732), Expect = 4e-77
Identities = 151/384 (39%), Positives = 259/384 (67%), Gaps = 6/384 (1%)
Query: 118 MVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVS-DDLKVHAKG-DF 175
+ S I Y+ + ++ K+ + + + ++ I + +++I++GD+S +D ++ G
Sbjct: 43 IASYINYKGETKV-KVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKV 101
Query: 176 ESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEA 235
+ +RK+IS +L+ +++ A+ + + + ++++++ QVAEAI QVS+EA
Sbjct: 102 RQGIEDLRKSIS---QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEA 158
Query: 236 QRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQ 295
QR+QENI+++ + M D+++ TV MEEF + E+ +A+EG +KG +A Q+E+I
Sbjct: 159 QREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEIS 218
Query: 296 DAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 355
M+ I + V+ VAEM K++ +I N I+ I+EQTNLLALNAAIEAARAGE G+GFAVVA
Sbjct: 219 RMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVAD 278
Query: 356 EVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGE 415
E+R LAEESK+AAE IR ++ +I +K+ ++VE T++G +VV S + +KE+V YL + E
Sbjct: 279 EIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAE 338
Query: 416 LLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEE 475
+++++E K +++ ++ E +E + LENLAASA+ETTA+AEEVSA+A+EQ+S+++E
Sbjct: 339 MMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
Query: 476 VKRNIIELRDIVKKLREAVEFIKV 499
++ ++ EL +V L E + K+
Sbjct: 399 LRESVKELDRLVDVLMEQISKFKL 422
>pir||A72254 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981993|gb|AAD36498.1|AE001795_1 (AE001795)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 566
Score = 200 bits (503), Expect = 3e-50
Identities = 113/349 (32%), Positives = 191/349 (54%)
Query: 151 ITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDL 210
+ +EKIS GD+S + + +K +F I + +T+ NLR++++ + +E + +L
Sbjct: 218 VLSALEKISSGDLSVSVDIKSKDEFGLIAQKLNETVGNLRKMVQEIDKSQDEVERVSEEL 277
Query: 211 TRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVV 270
+S ++ A+ ++A A +S E Q +I E+ G + +Q ++E S
Sbjct: 278 FALSQQLRSALEEIARASDTISKEVQNASASIEEVTSGSEEVSANSQNISKLIQEISENA 337
Query: 271 NEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTN 330
+ + AR G+ E+A+ +VED+ + + V V E ++N+ +I+ I IAEQTN
Sbjct: 338 DNIADFARNGQRVLEEAVKKVEDVSENSRETADVVSNVTESARNIEEIVRTIQSIAEQTN 397
Query: 331 LLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETE 390
LLALNAAIEAARAGE GRGFAVVA E+R LAEES++A E+I IL I+E VE+ E ++
Sbjct: 398 LLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQKATEEISQILENIREGVERTNEMSK 457
Query: 391 KGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAA 450
K V++ D+ ++E+ I ++D+ ++++ I E AL+ +A
Sbjct: 458 KNVEITKDARRLVEESYESFNQIVTRIEDLAARIEGIAASAQELSAASEEMSSALDAVAK 517
Query: 451 SAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
+ EEVS + EQ + + + EL+ + +L+E VE K+
Sbjct: 518 TTTTVADEVEEVSENITEQEKAAKRIADIGTELKKLSDELKEDVERFKI 566
>dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [Bacillus halodurans]
Length = 667
Score = 190 bits (479), Expect = 2e-47
Identities = 109/361 (30%), Positives = 203/361 (56%), Gaps = 1/361 (0%)
Query: 140 ISQDVLQTLEIITERMEKISEGDV-SDDLKVHAKGDFESILNSMRKTISNLRELMKTVRD 198
I++ + + + +IT ++ I+ GD+ S DL++ + + + +++ + +NL+E++ V D
Sbjct: 307 IARSMSRPIRLITSHVQTIASGDLTSSDLQIKRQDEIGILAHNVNQMATNLKEVIHQVGD 366
Query: 199 LALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQR 258
A + + + L+ S E+S + Q++E+IQQV+ +++Q + E + + Q+
Sbjct: 367 SADRVAASSQQLSASSEEVSRSSEQISESIQQVASGSEKQSSGVNESTLSLEEVSSSVQQ 426
Query: 259 TVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDI 318
+A + + N + A+EG E + + I +++ Q + +AE SK + +I
Sbjct: 427 IAEASVQITESANSTIEKAKEGGQSVENNVETMNKIHESVTDSVQITKMLAERSKEINNI 486
Query: 319 INAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEI 378
++ I IAEQTNLLALNAAIEAARAGE G+GFAVVA EVR LAE S+ ++++I I+ EI
Sbjct: 487 LDVITSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKLAESSQHSSQQISEIVVEI 546
Query: 379 QEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHV 438
Q+++++ ++ V D + ET + I + + V +++ + V
Sbjct: 547 QKEMDRTSTAMNGVMEEVKDGLTVANETKTHFQEIIQSTNQVAEQIESMAATSEEISAEV 606
Query: 439 ENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIK 498
E + +A +A+ T+ SA++V+A+++EQ ++MEEV + L + LRE + K
Sbjct: 607 EQVSASFNEIAVTAENTSDSAQDVAAASEEQLATMEEVTSSAQYLSQMATDLRELLSKFK 666
Query: 499 V 499
V
Sbjct: 667 V 667
>dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 667
Score = 189 bits (476), Expect = 5e-47
Identities = 109/361 (30%), Positives = 202/361 (55%), Gaps = 1/361 (0%)
Query: 140 ISQDVLQTLEIITERMEKISEGDV-SDDLKVHAKGDFESILNSMRKTISNLRELMKTVRD 198
I++ + + + +IT ++ I+ GD+ S DL++ + + + +++ + +NL+E++ V D
Sbjct: 307 IARSMSRPIRLITSHVQTIASGDLTSSDLQIKRQDEIGILAHNVNQMATNLKEVIHQVGD 366
Query: 199 LALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQR 258
A + + + L+ S E+S + Q++E+IQQV+ +++Q + E + + Q+
Sbjct: 367 SADRVAASSQQLSASSEEVSRSSEQISESIQQVASGSEKQSSGVNESTLSLEEVSSSVQQ 426
Query: 259 TVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDI 318
+A + + N + A+EG E + + I +++ Q + +AE SK + +I
Sbjct: 427 IAEASVQITESANSTIEKAKEGGQSVENNVETMNKIHESVTDSVQITKMLAERSKEINNI 486
Query: 319 INAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEI 378
++ I IAEQTNLLALNAAIEAARAGE G+GFAVVA EVR LAE S+ ++++I I+ EI
Sbjct: 487 LDVITSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKLAESSQHSSQQISEIVVEI 546
Query: 379 QEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHV 438
Q+++++ ++ V D + ET + I + + V +++ + V
Sbjct: 547 QKEMDRTSTAMNGVMEEVKDGLTVANETKTHFQEIIQSTNQVAEQIESMAATSEEISAEV 606
Query: 439 ENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIK 498
E + +A A+ T+ SA++V+A+++EQ ++MEEV + L + LRE + K
Sbjct: 607 EQVSASFNEIAVIAENTSDSAQDVAAASEEQLATMEEVTSSAQYLSQMATDLRELLSKFK 666
Query: 499 V 499
V
Sbjct: 667 V 667
>sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H1)
>gi|1075866|pir||B54078 methyl-accepting chemotaxis
transducer mcpA - Bacillus subtilis
>gi|459690|gb|AAA20556.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635608|emb|CAB15102.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635620|emb|CAB15113.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 661
Score = 184 bits (462), Expect = 2e-45
Identities = 108/361 (29%), Positives = 199/361 (54%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
I + + L+ + ++ISEGD+++ + + +K + + S S+LR L+ ++D
Sbjct: 301 IIRSITTPLKQLVGSSKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDS 360
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ + + +LT +++ S+A + AI+Q S ++Q ENI E + D
Sbjct: 361 VDNVAASSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNM 420
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
A E + + IA EG + + Q+ I ++K Q V+ + SK++ +I+
Sbjct: 421 AQASEVITDSSVQSTEIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITNIL 480
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
I IA+QTNLLALNAAIEAARAGE GRGF+VVA+EVR LA +S ++A++I G++ EI
Sbjct: 481 RVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIV 540
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
+++ ++ + + V +D +T I E+ + + +LQ++ + E
Sbjct: 541 KEINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSASSE 600
Query: 440 NAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
A E++A+ ++E++A ++++ASA+EQ +SMEE+ + L + ++LR+ + K+
Sbjct: 601 EVSGASEHIASISKESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRFKI 660
Query: 500 E 500
E
Sbjct: 661 E 661
>sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >gi|1075830|pir||C54078
methyl-accepting chemotaxis protein tlpA - Bacillus
subtilis >gi|459689|gb|AAA20555.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635609|emb|CAB15103.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635621|emb|CAB15114.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 182 bits (457), Expect = 8e-45
Identities = 106/371 (28%), Positives = 201/371 (53%)
Query: 130 IGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNL 189
IG + + + + + L I EKISEGD+++ +++++K + + S +L
Sbjct: 291 IGAGMTAIYFVIRSITKPLRRIVASAEKISEGDLTETIEINSKDELGVLSESFNHMAHSL 350
Query: 190 RELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGM 249
R L+ ++D + S + +LT + + S A + AI+Q S ++ Q E I E +
Sbjct: 351 RSLIHGIKDSVEHVASSSEELTASADQTSRATEHITMAIEQFSNGSESQSEKIETTTEQI 410
Query: 250 NITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVA 309
N D A + + ++ +G+ +K Q+ I ++K Q V+ +
Sbjct: 411 NEMNDGLAELARAAAVITETSADSTEVSSKGETLVQKTAGQMNTIDHSVKAAEQVVKGLE 470
Query: 310 EMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
SK++ +I+ I IA+QTNLLALNAAIEAARAGE GRGF+VVA+EVR LA +S ++A+
Sbjct: 471 IKSKDITNILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAK 530
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKN 429
+I +++EI +++ ++ + K V+ + ET +I ++ + + S+LQ++
Sbjct: 531 EIESLISEIVKEIHTSLNVLQSVNKEVETGLVMTDETKQSFKHISQMTNQIASELQNMNA 590
Query: 430 ELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKK 489
+ + A ++ A ++E++ ++++ASA+EQ +SMEE+ + + L + ++
Sbjct: 591 TVEELSAGAQEISAASNDITAISKESSDGIQDIAASAEEQLASMEEISSSALTLERMSEE 650
Query: 490 LREAVEFIKVE 500
LR+ + KV+
Sbjct: 651 LRDLTKQFKVD 661
>dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 559
Score = 176 bits (443), Expect = 3e-43
Identities = 116/369 (31%), Positives = 201/369 (54%), Gaps = 17/369 (4%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVS-DDLKVHAKGDFESILNSMRKTISNLRELMKTVRD 198
I++ + + + + ++ +I++GD+S +D+ V +K + + + + S+LR L+ ++
Sbjct: 199 IARIITKPIHSLLGQVSQIAKGDLSGEDINVKSKDEIGRLAKAFDEMKSHLRSLIGKTKE 258
Query: 199 LALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENI-TEIMEGMNITADVTQ 257
++ + + A +L+ S E NQVA IQ VS ++ + ++ ++A V +
Sbjct: 259 MSDQVTATAQELSASSQESVTVTNQVATTIQDVSEQSMDTVDRAKASVIAAKEMSAGV-E 317
Query: 258 RTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGD 317
R A + S +E S A +G+ E+AI Q++ Q +++ ++++ E S +G
Sbjct: 318 RITFATADVSIKADEAASHAEDGERSIERAIEQMDTAQHSVQQSATFIKQLGERSSEIGS 377
Query: 318 IINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNE 377
I+ I IAEQTNLLALNAAIEAARAGE G+GFAVVA EVR LAEES +A +I +L
Sbjct: 378 ILELIHSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKLAEESGRSANQISKMLAT 437
Query: 378 IQEKVEKAVE-------ETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNE 430
IQ+ EKA++ E EKG KVV D+ + + + E + DV + Q I
Sbjct: 438 IQQDTEKAIQEMDKGQVEVEKGTKVVGDAGATFAKITASIAAVNEQMLDVSTATQQIARN 497
Query: 431 LANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKL 490
+ ++N ++A + + ++ V+AS +EQ SSMEE+ + +L ++ L
Sbjct: 498 TIELSDSIQNMEQA-------SMQNADHSQTVAASTEEQLSSMEEIAYSAEQLSNLAAGL 550
Query: 491 REAVEFIKV 499
+E + K+
Sbjct: 551 QEEINRFKL 559
>dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 695
Score = 176 bits (442), Expect = 4e-43
Identities = 104/366 (28%), Positives = 199/366 (53%), Gaps = 9/366 (2%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDL------KVHAKGDFESILNSMRKTISNLRELM 193
I+ ++++ ++ + +++GD + D+ + GD NSM++++S ++
Sbjct: 333 IANNIIKPIKATIDVGNHLAQGDFTKDIPEAYLQRPDEVGDIARSFNSMKQSLS---AMI 389
Query: 194 KTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITA 253
V A + + +L + E + NQ+A I +++ A Q E+ I+E M T
Sbjct: 390 HNVLKHAEQAAAASQELATSAEETKQTSNQIAVTINEIAEGATGQSEHAASILERMKTTV 449
Query: 254 DVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSK 313
Q+ A + N+ A +G+ + ++++ ++ ++V+ + E S+
Sbjct: 450 LEAQKGQQASIHALELANQSNQSALKGEQVTRTTVEHLQEVNAQVRTSVESVKSLGERSE 509
Query: 314 NVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRG 373
+G I+ I+ IA+QTNLLALNAAIEAARAGE G+GFAVVA+EVR LA +S E+A+KI
Sbjct: 510 EIGSIVTDISSIADQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAAQSAESADKITQ 569
Query: 374 ILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELAN 433
++ IQ + ++ V+ E+ + V +++++E L I + + + QD+ + L
Sbjct: 570 LVGGIQGETKEIVQLIEQNLVSVQRQMEYIQEVGRSLREIVHHTEGTKEQSQDMNSVLTQ 629
Query: 434 TQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
H E ++E +++ +++ ASAEEV+A A+EQ++++EE+ + L + ++L E
Sbjct: 630 VLNHAETVLSSIEEISSIIEQSAASAEEVAAGAEEQSATVEEITNSSTNLAHMAEELNEE 689
Query: 494 VEFIKV 499
V K+
Sbjct: 690 VSKFKL 695
>pir||C72291 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981690|gb|AAD36219.1|AE001771_12 (AE001771)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 530
Score = 175 bits (440), Expect = 7e-43
Identities = 102/356 (28%), Positives = 192/356 (53%), Gaps = 10/356 (2%)
Query: 145 LQTLEIITERMEKISEGDVSDDLK-VHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
L+ L+ + E + D++ +++ K + ++LN + +I LR +K V+ ++
Sbjct: 175 LRLLKPVMEASRSLRNNDLTINIQEAKGKDEISTLLNEFKASIEYLRNNLKDVQTETFSV 234
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAM 263
++++ + EI+ + +++ + +S + ++ E G + T+ D+
Sbjct: 235 AESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSA 294
Query: 264 EEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIA 323
++ + ++ +A+E D +K I I ++ K + + V+ + ++ + + I
Sbjct: 295 QQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETIN 354
Query: 324 DIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVE 383
IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LAEES++A+E +R ++NEI+ E
Sbjct: 355 AIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAE 414
Query: 384 KA-------VEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELAN-TQ 435
A E+G K+ D++ + L VG + I E+L ++ + +++ + T
Sbjct: 415 DAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITT 474
Query: 436 EHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
ENAK A E + S +E A +E+SAS +E S ++ ++ N+ L++IV + +
Sbjct: 475 AMTENAKNA-EEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEIVARYK 529
>pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus subtilis
Length = 662
Score = 175 bits (439), Expect = 1e-42
Identities = 100/368 (27%), Positives = 203/368 (54%), Gaps = 14/368 (3%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
I + + + L+ + + + IS GD+++ +++H+K + + S + +LR L+ ++D
Sbjct: 302 IVRSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLRSLISAIQDS 361
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ + + LT + + S+A + AI+Q S + Q + +N+ + Q+
Sbjct: 362 VNNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQV 421
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
+ + + IA G+ ++ + Q+ I +++ V+ + SK++ I+
Sbjct: 422 SQTSSDITKASIQSTEIAGTGEKFVQQTVGQMNSINQSVQQAEAVVKGLEGKSKDITSIL 481
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
I IA+QTNLLALNAAIEAARAGE GRGF+VVA+EVR LA +S ++A++I ++ EI
Sbjct: 482 RVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEIV 541
Query: 380 EKVEKAV-------EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
+++ ++ +E + G+ V D++ KE+ +I + +++ KLQ + + +
Sbjct: 542 AEIDTSLHMFKEVNQEVQSGLVVTDNT----KES---FQSIFSMTNEIAGKLQTMNSTVE 594
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
+ ++ A+ +A ++E++AS ++++ASA+EQ +SMEE+ + L + ++LR+
Sbjct: 595 QLSDRSQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRD 654
Query: 493 AVEFIKVE 500
+ K+E
Sbjct: 655 LTKQFKIE 662
>gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium sp. NRC-1]
Length = 789
Score = 175 bits (438), Expect = 1e-42
Identities = 130/482 (26%), Positives = 227/482 (46%), Gaps = 57/482 (11%)
Query: 64 LKETLWLSIGVMSIVAVISGAL-GMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKI 122
+++T+ ++ V+ ++AVIS A+ G+ L T+ P+ + A+ I G +
Sbjct: 287 VRDTVGQTVTVLVVLAVISLAIVGIALGRHTVTPLKRLRNRAQDIESGTFD------VDL 340
Query: 123 QYREDDEIGKLIEGF---RAISQDVLQTLEIITERME--KISEGDVSDDLK------VHA 171
R DE+G+L F R QD +Q E E K ++ D + A
Sbjct: 341 STRRIDEVGRLYGSFDDMRVSLQDRIQEAEAAVEEANAAKAEAEELRTDAEDAQAEAERA 400
Query: 172 KGDFESILNSMRKTISNLRELMKTVRDLALT-------------------------LESR 206
K E+ +++ ++ E+M+ V D LT LE+
Sbjct: 401 KATAEAASERLQERAADYSEVMQAVADGDLTERLDEDADEEAMRAVATEFNAMLDGLEAT 460
Query: 207 ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEF 266
+ + E+++ QVA +++ +Q E I EI +G D +R M+E
Sbjct: 461 IAQVAGFADEVADETLQVATGAEEIETTSQTVSERIQEIADGAIQQHDDLERAAGEMDEL 520
Query: 267 SGVVNEVLSIA--------------REGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMS 312
S + EV + + G+D E AI + +I+ + + E
Sbjct: 521 SASIQEVAASSATVAETAADAVERGEAGRDAAESAIDDMAEIESLSADAVDQILALQERM 580
Query: 313 KNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIR 372
++GDII I DIAEQTN+LALNA IEAARA + G GFAVVA EV++LAEE+K+AA I
Sbjct: 581 SDIGDIIEFITDIAEQTNMLALNANIEAARADKDGDGFAVVANEVKDLAEETKQAAADIE 640
Query: 373 GILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
+ +Q + ++ V + + +DD V ++ + + + ++D +Q+I +
Sbjct: 641 SEIQAVQAETDETVADIRATSEHIDDGVSTVERAAAAIEDTVDAIEDANHGIQEISDATE 700
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
+ + ++ + ++++A +Q T AE+VSA+A+EQ++S+ E+ R+ +LRD L
Sbjct: 701 DQADATQSVVRRVDDVADISQHVTEDAEQVSAAAEEQSASVAEIARSADDLRDRADALAT 760
Query: 493 AV 494
V
Sbjct: 761 TV 762
>sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >gi|1075831|pir||D54078
methyl-accepting chemotaxis protein tlpB - Bacillus
subtilis >gi|459691|gb|AAA20557.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635607|emb|CAB15101.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635619|emb|CAB15112.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 173 bits (435), Expect = 3e-42
Identities = 100/368 (27%), Positives = 201/368 (54%), Gaps = 14/368 (3%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
I + + + L + KIS GD+++ + +H+K +F + S + ++LR ++ ++
Sbjct: 301 IIRAITKPLRKLVSTSAKISSGDLTEVIDIHSKNEFGQLGESFNEMSASLRSVIGVIQTS 360
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ S + +LT +++ S+A + AI+Q S + Q E + ++ + +
Sbjct: 361 VENVASSSEELTASAAQTSKATEHITLAIEQFSDGNEAQSEKLETSSNHLSQMNEGISKV 420
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
A + + A G+ E + Q++ I +++ V+ + S+++ I+
Sbjct: 421 AQASSTITKSSIQSSEAAGSGEKLVEHTVGQMKTIDQSVQKAEAVVKGLETKSQDITSIL 480
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
N I IA+QTNLLALNAAIEAARAGE GRGF+VVA+EVR LA +S ++A++I G++ EI
Sbjct: 481 NVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIQEIV 540
Query: 380 EKVEKAV-------EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
++ ++ E ++G+++ D + + K+ I E+ + +LQ++ +
Sbjct: 541 REISTSLSMFQSVNHEVKEGLQITDQTAESFKQ-------IYEMTTQISGELQNLNATVE 593
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
+ A+E+++A A+E++A ++++ASA+EQ +SMEE+ + L ++ ++L++
Sbjct: 594 QLSAGSQEVSSAVEDISAVAKESSAGIQDIAASAEEQLASMEEISSSAETLANMAEELQD 653
Query: 493 AVEFIKVE 500
+ K+E
Sbjct: 654 ITKKFKIE 661
>sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H3)
>gi|459688|gb|AAA20554.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635610|emb|CAB15104.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635622|emb|CAB15115.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 170 bits (427), Expect = 3e-41
Identities = 99/368 (26%), Positives = 202/368 (53%), Gaps = 14/368 (3%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
I + + + L+ + + + IS GD+++ +++H+K + + S + +LR L+ +++
Sbjct: 302 IVRSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLRSLISAIQNS 361
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ + + LT + + S+A + AI+Q S + Q + +N+ + Q+
Sbjct: 362 VNNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQV 421
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
+ + + IA G+ ++ Q+ I +++ V+ + SK++ I+
Sbjct: 422 SQTSSDITKASIQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKDITSIL 481
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
I IA+QTNLLALNAAIEAARAGE GRGF+VVA+EVR LA +S ++A++I ++ EI
Sbjct: 482 RVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEIV 541
Query: 380 EKVEKAV-------EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
+++ ++ +E + G+ V D++ KE+ +I + +++ KLQ + + +
Sbjct: 542 AEIDTSLHMFKEVNQEVQSGLVVTDNT----KES---FQSIFSMTNEIAGKLQTMNSTVE 594
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
+ ++ A+ +A ++E++AS ++++ASA+EQ +SMEE+ + L + ++LR+
Sbjct: 595 QLSDRSQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRD 654
Query: 493 AVEFIKVE 500
+ K+E
Sbjct: 655 LTKQFKIE 662
>pir||T44262 transducer protein htrVI [similarity] - Halobacterium salinarum
>gi|4104485|gb|AAD02052.1| (AF036231) transducer HtrVI
[Halobacterium salinarum]
Length = 788
Score = 170 bits (427), Expect = 3e-41
Identities = 130/482 (26%), Positives = 227/482 (46%), Gaps = 58/482 (12%)
Query: 64 LKETLWLSIGVMSIVAVISGAL-GMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKI 122
+++T+ ++ V+ ++AVIS A+ G+ L T+ P+ + A+ I G +
Sbjct: 287 VRDTVGQTVTVLVVLAVISLAIVGIALGRHTVTPLKRLRNRAQDIESGTFD------VDL 340
Query: 123 QYREDDEIGKLIEGF---RAISQDVLQTLEIITERME--KISEGDVSDDLK------VHA 171
R DE+G+L F R QD +Q E E K ++ D + A
Sbjct: 341 STRRIDEVGRLYGSFDDMRVSLQDRIQEAEAAVEEANAAKAEAEELRTDAEDAQAEAERA 400
Query: 172 KGDFESILNSMRKTISNLRELMKTVRDLALT-------------------------LESR 206
K E+ +++ ++ E+M+ V D LT LE+
Sbjct: 401 KATAEAASERLQERAADYSEVMQAVADGDLTERLDEDADEEAMRAVATEFNAMLDGLEAT 460
Query: 207 ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEF 266
+ + E+++ QVA +++ +Q E I EI +G D +R M+E
Sbjct: 461 IAQVAGFADEVADETLQVATGAEEIETTSQTVSERIQEIADGAIQQHDDLERAAGEMDEL 520
Query: 267 SGVVNEVLSIA--------------REGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMS 312
S + EV + + G+D E AI + +I+ + + E
Sbjct: 521 SASIQEVAASSATVAETAADAVERGEAGRDAAESAIDDMAEIESLSADAVDQILALQERM 580
Query: 313 KNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIR 372
++GDII I DIAEQTN+LALNA IEAARA + G GFAVVA EV++LAEE+K+AA I
Sbjct: 581 SDIGDIIEFITDIAEQTNMLALNANIEAARADKDGDGFAVVANEVKDLAEETKQAAADIE 640
Query: 373 GILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
+ +Q + ++ V + + +DD V ++ + + + ++D +Q+I +
Sbjct: 641 SEIQAVQAETDETVADIRATSEHIDDGVSTVERAAAAIEDTVDAIEDANHGIQEISDATE 700
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
+ + ++ + ++++A +Q T AE+VSA+A+EQ++S+ E+ R+ +LRD L
Sbjct: 701 DQADATQSVVRRVDDVADISQHVTEDAEQVSAAAEEQSASVAEIARS-DDLRDRADALAT 759
Query: 493 AV 494
V
Sbjct: 760 TV 761
>dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 560
Score = 169 bits (425), Expect = 4e-41
Identities = 118/459 (25%), Positives = 223/459 (47%), Gaps = 54/459 (11%)
Query: 45 QTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMR----PINEM 100
Q V A+ + ++ A++Q T ++ V+ V++++ L + L T + P+ +
Sbjct: 152 QASQFVMAMEDIIQEAETQANTTANIAFAVVVAVSIVAFVLAIVLAFITSKMITKPLARL 211
Query: 101 AKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISE 160
K+A +A+G L+ R ++ + DEIG+L E F A+ ++
Sbjct: 212 TKVARHVADGDLTTER-----VKIKNRDEIGQLNESFEAMKEN----------------- 249
Query: 161 GDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEA 220
LR L++ + A + + L+ + + S A
Sbjct: 250 ----------------------------LRGLIQRILQNADQVAVSSEQLSASAEQTSSA 281
Query: 221 INQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREG 280
Q AI+ +S A Q ++ + + D ++ N L+ A EG
Sbjct: 282 TEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMTDGAKQIESNANLTLTYANEG 341
Query: 281 KDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEA 340
++ + ++ I +++K QA+Q +++ S+++ +I++ I IAEQTNLLALNAAIEA
Sbjct: 342 DTLVKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILDVIQSIAEQTNLLALNAAIEA 401
Query: 341 ARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSV 400
ARAGE G+GFAVVA+EVR LAEES ++ +KI +++E+ ++ +VE+ + V +
Sbjct: 402 ARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVKETNNSVEKMGLVKEEVSVGL 461
Query: 401 DFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAE 460
+T +I + V S+++ + E +++N+A+ A+E+ +
Sbjct: 462 KTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKSTEVATSVQNMASVAEESAEQSS 521
Query: 461 EVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
VSA A+E +SM+EV + +L ++ + L+EA++ K+
Sbjct: 522 SVSAVAEETLASMQEVTASANQLTEMAETLQEAIKQFKL 560
>dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 433
Score = 168 bits (421), Expect = 1e-40
Identities = 104/375 (27%), Positives = 200/375 (52%), Gaps = 15/375 (4%)
Query: 134 IEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGD-FESILNSMRKTISNLREL 192
I G+ A S + + L + K +EGD+ +D+ V D S+ + + +++LR +
Sbjct: 66 ILGYVASSFFIAKPLSALERSARKAAEGDIHNDVAVSKSDDEIRSLGLAYNEMLASLRSM 125
Query: 193 MKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNIT 252
+ + + +++ ++ + + S+ Q+A + ++S A+ E++ + E M+
Sbjct: 126 VNEINANFVETDAKVKEMNIAAQQSSDRAEQIAVTMSEISKGAENSAESVQQTAEAMDQV 185
Query: 253 ADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMS 312
+ ++ + ME+ NE++ E + + + ++ + + + +V + E +
Sbjct: 186 NQIAEQVQERMEKSRQSSNEMVKTLAESRKVIDSLVLGIKQLAEDNEKSLDSVGRLEEQA 245
Query: 313 KNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIR 372
K V +II+ + DIAEQTNLLALNA+IEAARAGE G+GFAVVA EVR LA+ES +A + I
Sbjct: 246 KEVDEIISLVGDIAEQTNLLALNASIEAARAGEHGKGFAVVADEVRKLADESGKAVQGIS 305
Query: 373 GILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
++ IQE+V+ V T+ G +V + K T + +VE+ ++++ N +
Sbjct: 306 NLVRNIQEEVKHVV--TQIGTQVEKAKTESEKGTA-----TNRAIQEVETSVREVANVIE 358
Query: 433 NTQEHVENAKKAL-------ENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
E ++ KA+ + +AA A+ET+A A++V+A +Q ++++E+ L
Sbjct: 359 EISEMMKTQTKAIRETAKQTQEVAAIAEETSAGAQQVAAVTDQQTNAVQEMSTTANILSK 418
Query: 486 IVKKLREAVEFIKVE 500
KKL++ +E +E
Sbjct: 419 QAKKLKQTIEKFMIE 433
>gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium sp. NRC-1]
Length = 790
Score = 168 bits (420), Expect = 2e-40
Identities = 113/466 (24%), Positives = 226/466 (48%), Gaps = 25/466 (5%)
Query: 28 IAISDLYDNLEKTMKVVQTGG---SVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGA 84
IA D+ +E+T ++ + G S I+E L+ Q ++ + G
Sbjct: 293 IAAGDIDTAIEETTRIDEVGDLRRSFRDIQEYLQTVAGQADALAEQDFDADALDKSVPGR 352
Query: 85 LGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDV 144
LG L +A + ++ + SR S+ +E L + +QD+
Sbjct: 353 LGESLETMHWDLETAIADLEDAQETAEQSRKEAEQSR------EEAEALAAALESQAQDI 406
Query: 145 LQTLEI-----ITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
+T+E +T+R+E D + S+L + TI ++ K V +
Sbjct: 407 RETVEHAADGDLTQRLET----DTDHESMAAIATALNSLLEELEGTIHRIQRFSKDVAE- 461
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
++ +T + E+ A QV+E++Q++S +A++Q + ++ + M + +
Sbjct: 462 ------SSDHITTSAEEVKRASGQVSESVQEMSADARQQNGIVQDVSDEMTDLSATIEEI 515
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
+ +E + N+ +S+ + G+ + + AI ++ + + K ++ + + +G+I+
Sbjct: 516 ASSSDEVAAKSNDAVSVGQSGRARSQDAIEEMNAVDEQAKRTIAEMEALDDEMTEIGEIV 575
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
I DIAEQT++LALNA+IEAARAGE G GFAVVA E+++L++E+ EA ++I ++ ++Q
Sbjct: 576 TLIDDIAEQTSMLALNASIEAARAGEAGEGFAVVADEIKSLSKETTEATQEIESLIADVQ 635
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
+ AV + ++ + + + +TV + I E +++ +Q I E
Sbjct: 636 DSTTDAVTDMQEMGDRLSEGKSTVTDTVETIDTIVERIEEANGGVQTINTATDEQATTTE 695
Query: 440 NAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
++ + + + +TTA AE+ +A+A+EQ +S+ EV I +L D
Sbjct: 696 EVVTMVDEVGSISDDTTARAEDAAAAAEEQTASLTEVTNRIQDLSD 741
>sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|11277608|pir||T46810
halobacterial transducer protein IV [imported] -
Halobacterium salinarum >gi|1435131|emb|CAA64841.1|
(X95589) halobacterial transducer protein IV
[Halobacterium salinarum]
Length = 810
Score = 167 bits (418), Expect = 3e-40
Identities = 132/498 (26%), Positives = 236/498 (46%), Gaps = 40/498 (8%)
Query: 16 ILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKET--LWLSIG 73
ILV L +++ I + + +EA ++ A S+ E L+ SIG
Sbjct: 329 ILVALVGVVLVGGTIGR--NTAAAVQSLSAAAAEIEAGNYDVDVASSRRDEIGQLFASIG 386
Query: 74 VM--SIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIG 131
M ++V I A R E A A+ AE + RA + + + + D
Sbjct: 387 SMRDALVTQIDEAEAAR----------EQATEAQQDAEAERERAEDARERAEDAKADA-- 434
Query: 132 KLIEGFRAISQDVLQTLEIITERMEKISEGDVS-----DDLKVHAKG----DFESILNSM 182
A++ ++ E ++ M ++GD++ DD A F +L
Sbjct: 435 ------EALAAELEAQAERYSDVMAACADGDLTRRMPADDTDNEAMAAIAASFNEMLAQW 488
Query: 183 RKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENI 242
TI +++E V + E A D R S ++SE++ ++A A E + + +
Sbjct: 489 EHTIIDIQEFADAVATASEEAEVGAADAERASGQVSESVQEIAGAAD----EQRNMLDTV 544
Query: 243 TEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIR 302
+ M ++ + + D++ E S ++ IAR+G+ E AI + +Q+A+
Sbjct: 545 SGEMTDLSAAIEEVAASADSVAEHS---HQTAEIARDGEQTAEDAIERSLSVQEAIDATV 601
Query: 303 QAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAE 362
Q V+ + + + +I++ I+DIAEQTN+LALNA IEAARA + G GFAVVA EV++LAE
Sbjct: 602 QNVEALDDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLAE 661
Query: 363 ESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVES 422
E++E+A I + E+Q + V E + +D +D ++E V + + D+ ++
Sbjct: 662 ETQESAGDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVVDAFTAVSDHADETDT 721
Query: 423 KLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIE 482
+Q+I + + E A E +A + T A+ VSA+A+EQA+SM E+ ++
Sbjct: 722 GVQEISDTTDDQASSTEEAVSMTEEVADLSDSTAGEAQSVSAAAEEQAASMSEISDSVES 781
Query: 483 LRDIVKKLREAVEFIKVE 500
L ++L+ + +V+
Sbjct: 782 LSGQAEQLKALLSEFEVD 799
>pir||T48840 transducer protein basT [validated] - Halobacterium salinarum
>gi|7327959|emb|CAB82572.1| (AJ245950) chemotaxis
transducer protein BasT [Halobacterium salinarum]
Length = 805
Score = 166 bits (417), Expect = 4e-40
Identities = 101/381 (26%), Positives = 199/381 (51%), Gaps = 14/381 (3%)
Query: 128 DEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDF------------ 175
DE + E R +++ E + ER+E+ + + SD++ A GD
Sbjct: 412 DEAREDAEQTRKDAEEARAASERLNERLERRA-AEYSDEMAAAAAGDLTRRLDEDVDSEP 470
Query: 176 -ESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVE 234
+ I + + ++ + VR +A +++ + D++ ++EI A +QV+E++Q +S +
Sbjct: 471 MQDIAEAFNDMMGDVEATLAQVRSIADAVDAASTDVSTSAAEIRSASDQVSESVQDISAD 530
Query: 235 AQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDI 294
A +Q++ + + + + + + + ++ + VN+ + + G++ GE A++++E I
Sbjct: 531 ADQQRDRLGTVGDEVTSLSATVEEIAASADDVAETVNQAATESERGQELGEDAVAELERI 590
Query: 295 QDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVA 354
+ + V + E +GD+ I DIAEQTN+LALNA IEAARA + G GFAVVA
Sbjct: 591 EATADSAVERVTALEEAVDAIGDVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVA 650
Query: 355 QEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIG 414
EV++LA+E KE+A +I +++++Q V V + + VD + ++ + L +IG
Sbjct: 651 DEVKDLADEVKESATEIETLVDDVQADVADTVADMSELGDRVDAGSETIEAALAALDDIG 710
Query: 415 ELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
+ ++ +Q I + E ++ + + T +++VSA+A+EQA+S+
Sbjct: 711 DQVEAANGSVQSISDATDEQAASTEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVS 770
Query: 475 EVKRNIIELRDIVKKLREAVE 495
EV +L D V L + ++
Sbjct: 771 EVAGRADDLDDQVSTLNDLLD 791
>gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium sp. NRC-1]
Length = 633
Score = 166 bits (417), Expect = 4e-40
Identities = 101/381 (26%), Positives = 199/381 (51%), Gaps = 14/381 (3%)
Query: 128 DEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDF------------ 175
DE + E R +++ E + ER+E+ + + SD++ A GD
Sbjct: 240 DEAREDAEQTRKDAEEARAASERLNERLERRA-AEYSDEMAAAAAGDLTRRLDEDVDSEP 298
Query: 176 -ESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVE 234
+ I + + ++ + VR +A +++ + D++ ++EI A +QV+E++Q +S +
Sbjct: 299 MQDIAEAFNDMMGDVEATLAQVRSIADAVDAASTDVSTSAAEIRSASDQVSESVQDISAD 358
Query: 235 AQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDI 294
A +Q++ + + + + + + + ++ + VN+ + + G++ GE A++++E I
Sbjct: 359 ADQQRDRLGTVGDEVTSLSATVEEIAASADDVAETVNQAATESERGQELGEDAVAELERI 418
Query: 295 QDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVA 354
+ + V + E +GD+ I DIAEQTN+LALNA IEAARA + G GFAVVA
Sbjct: 419 EATADSAVERVTALEEAVDAIGDVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVA 478
Query: 355 QEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIG 414
EV++LA+E KE+A +I +++++Q V V + + VD + ++ + L +IG
Sbjct: 479 DEVKDLADEVKESATEIETLVDDVQADVADTVADMSELGDRVDAGSETIEAALAALDDIG 538
Query: 415 ELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
+ ++ +Q I + E ++ + + T +++VSA+A+EQA+S+
Sbjct: 539 DQVEAANGSVQSISDATDEQAASTEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVS 598
Query: 475 EVKRNIIELRDIVKKLREAVE 495
EV +L D V L + ++
Sbjct: 599 EVAGRADDLDDQVSTLNDLLD 619
>gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium sp. NRC-1]
Length = 810
Score = 166 bits (416), Expect = 5e-40
Identities = 132/498 (26%), Positives = 236/498 (46%), Gaps = 40/498 (8%)
Query: 16 ILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKET--LWLSIG 73
ILV L +++ I + + +EA ++ A S+ E L+ SIG
Sbjct: 329 ILVALVGVVLVGGTIGR--NTAAAVQSLSAAAAEIEAGNYDVDVASSRRDEIGQLFASIG 386
Query: 74 VM--SIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIG 131
M ++V I A R E A A+ AE + RA + + + + D
Sbjct: 387 SMRDALVTQIDEAEAAR----------EQATEAQQDAEAERERAEDARERAEDAKADA-- 434
Query: 132 KLIEGFRAISQDVLQTLEIITERMEKISEGDVS-----DDLKVHAKG----DFESILNSM 182
A++ ++ E ++ M ++GD++ DD A F +L
Sbjct: 435 ------EALAAELEAQAERYSDVMAACADGDLTRRMPADDTDNEAMAAIAASFNEMLAQW 488
Query: 183 RKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENI 242
TI +++E V + E A D R S ++SE++ ++A A E + + +
Sbjct: 489 EHTIIDIQEFADAVATASEEAEVGAADAERASGQVSESVQEIAGAAD----EQRNMLDTV 544
Query: 243 TEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIR 302
+ M ++ + + D++ E S ++ IAR+G+ E AI + +Q+A+
Sbjct: 545 SGEMTDLSAAIEEVAASADSVAEHS---HQTAEIARDGEQTAEDAIERSLTVQEAIDATV 601
Query: 303 QAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAE 362
Q V+ + + + +I++ I+DIAEQTN+LALNA IEAARA + G GFAVVA EV++LAE
Sbjct: 602 QNVEALDDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLAE 661
Query: 363 ESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVES 422
E++E+A I + E+Q + V E + +D +D ++E V + + D+ ++
Sbjct: 662 ETQESAGDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVVDAFTAVSDHADETDT 721
Query: 423 KLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIE 482
+Q+I + + E A E +A + T A+ VSA+A+EQA+SM E+ ++
Sbjct: 722 GVQEISDTTDDQAASTEEAVSMTEEVADLSDSTAGEAQSVSAAAEEQAASMSEISDSVES 781
Query: 483 LRDIVKKLREAVEFIKVE 500
L ++L+ + +V+
Sbjct: 782 LSGQAEQLKALLSEFEVD 799
>sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1361920|pir||S55299
sensory rhodopsin II transducer protein -
Natronobacterium pharaonis >gi|510869|emb|CAA84468.1|
(Z35086) sensory rhodopsin II transducer [Natronomonas
pharaonis]
Length = 534
Score = 166 bits (415), Expect = 6e-40
Identities = 113/452 (25%), Positives = 217/452 (48%), Gaps = 35/452 (7%)
Query: 72 IGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIG 131
+G++ ++ + G + L T ++ +A A + +G L +++ R +DEIG
Sbjct: 65 LGLIILLGINLGLVAATLGGDTAASLSTLAAKASRMGDGDLD------VELETRREDEIG 118
Query: 132 KLIEGFRAISQDVLQTLE------------------IITER----------MEKISEGDV 163
L F + Q V +LE I TE M++ ++GD
Sbjct: 119 DLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEINTELQAEAERFGEVMDRCADGDF 178
Query: 164 SDDLKVHAKGD-FESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAIN 222
+ L + +SI S + + + L+ + A + A + + + EA
Sbjct: 179 TQRLDAETDNEAMQSIEGSFNEMMDGIEALVGRIERFADAVSEDAEAVRANAESVMEASE 238
Query: 223 QVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKD 282
V A+Q +S A Q E + +I M+ + T+ + ++ + + G++
Sbjct: 239 DVNRAVQNISDAAGDQTETVQQIALEMDDVSATTEEVAASADDIAKTARQAAETGEAGRE 298
Query: 283 KGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAAR 342
E AI+++ +++ + +++E+ E + +G++ IADIAEQTN+LALNA+IEAAR
Sbjct: 299 TAETAITEMNEVESRTEQAVASMEELNEDVREIGEVSEMIADIAEQTNILALNASIEAAR 358
Query: 343 AGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDF 402
A GFAVVA EV+ LAEE+K A E+I ++ +Q++ + V++ + V + V+
Sbjct: 359 ADGNSEGFAVVADEVKALAEETKAATEEIDDLIGTVQDRTQTTVDDIRETSDQVSEGVET 418
Query: 403 LKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEV 462
+++TV L I + ++ +Q+I + + A +E++AA++++T + AE
Sbjct: 419 VEDTVDALERIVDSVERTNDGIQEINQSTDAQADAAQKATTMVEDMAATSEQTASDAETA 478
Query: 463 SASAQEQASSMEEVKRNIIELRDIVKKLREAV 494
+ + + QA S++EV I L + L E +
Sbjct: 479 AETTETQAESVKEVFDLIDGLSEQADSLSETL 510
>pir||F72288 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981694|gb|AAD36222.1|AE001772_1 (AE001772)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 539
Score = 164 bits (410), Expect = 2e-39
Identities = 137/546 (25%), Positives = 267/546 (48%), Gaps = 77/546 (14%)
Query: 3 FGKKLVISIFTPLILVVLTAIIIQNIAISDLYDNLEKTMKVVQT------GGSVEAIRET 56
FG +I + +V TA I N AI +L N + VQ SVE +R +
Sbjct: 22 FGLLTFYNILSLEKIVADTANI--NRAIVELAINQAGVLVAVQNKDKSLLSSSVEGLRTS 79
Query: 57 LENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAES-IAEGKLSRA 115
L++ K+ + SG ++L+ ++ + EM +I +S I +G
Sbjct: 80 LDDIKAYQSD--------------FSGE-NLKLLQESIAHLEEMIRITDSLIVDGVDQSI 124
Query: 116 REMVSKIQYREDDEIGKLIEGF--------RAISQDVLQTLEII----------TER--- 154
+ ++Q + + KL++ + I ++++ L ++ T R
Sbjct: 125 YDRFVELQAEIRNPLRKLVQNLGVENVSMTKNIKRNIIFFLVVVCAAAMFIAIFTTRNLT 184
Query: 155 ---------MEKISEGDVSDDL-KVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLE 204
+E +S G ++ ++ K+ +K + ++ K L +++ + + +
Sbjct: 185 TPLKKLAVLVENLSHGVLNVEIEKIRSKDEIGKAAMAVEKLREILLDIITGINKASSEVS 244
Query: 205 SRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQ---ENITEIMEGMNITADVTQRTVD 261
S + +L+ S E+S +N ++EA+ ++ EA E T +E ++ TAD ++
Sbjct: 245 SSSEELSATSEELSANVNSISEALVSLNKEADENSATLEEFTASIEELSSTADSNSKSAQ 304
Query: 262 AMEEFSGVVNEVLSIAREG-KDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIIN 320
AM E + V+E + + E ++ EKA S E ++ +QA+ + M++N+ I++
Sbjct: 305 AMLESTQRVHEQVEKSTERIREITEKAHSTREMSENT----KQALNRLLSMAENINSIVD 360
Query: 321 AIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQE 380
I IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LAEESK A ++I IL ++++
Sbjct: 361 TINSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESKAATQQIGEILGKLRD 420
Query: 381 KVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVEN 440
++ + K+V+ + ++ET + +I ++ + + ++D+++ + + +
Sbjct: 421 EINNS-------SKIVESTASAIEETASLVESIKDVFESIRIAMEDVQSRVESVAASTQE 473
Query: 441 AKKALENLAASA-------QETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
+LE L+A +T + +++ QE +++EE+ + L ++ ++L+
Sbjct: 474 QSASLEELSAGVTRLTELLNKTRENTSSANSALQEANAALEELSASAQSLAELAQELQRR 533
Query: 494 VEFIKV 499
+EF K+
Sbjct: 534 IEFFKI 539
>sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|477735|pir||B47704 probable
sensory transducer protein - Clostridium thermocellum
>gi|144913|gb|AAA20891.1| (L04736) sensory transducer
protein [Clostridium thermocellum]
Length = 557
Score = 164 bits (410), Expect = 2e-39
Identities = 112/426 (26%), Positives = 220/426 (51%), Gaps = 47/426 (11%)
Query: 52 AIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGK 111
A +E ++ K + I V+ + +I+ ALG+ + +PI +M + A+ +A G
Sbjct: 108 AAKEKVDENKQVASTASTVMIVVIFVGILIAIALGVFISRIISKPIGQMVEAADRLALGD 167
Query: 112 LSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHA 171
+ E+ K + R DEIGKL E F+ + +++ + ++ E+I+ GD++ D++V +
Sbjct: 168 V----EVDVKAETR--DEIGKLAESFKRMIENIREQAYVV----ERIAAGDMTVDVRVKS 217
Query: 172 KGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQV 231
D L K ++++ T +++ ++++++ QV+++ Q+
Sbjct: 218 DKDL----------------LGKKLKEMVDTNNEVLSNINEVAAQVAAGAKQVSDSSMQL 261
Query: 232 SVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQV 291
S A Q +I E+ + A+ TQ + + NE+ +A+ ++G K ++++
Sbjct: 262 SQGATEQASSIEELTASLEQVANQTQLSAKNANQ----ANELAEVAKNNAEQGNKQMAEM 317
Query: 292 EDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFA 351
+ A++E+ S N+ II I +IA QTN+LALNAA+EAARAG+ G+GFA
Sbjct: 318 LN----------AMEEINNSSSNISRIIKVIDEIAFQTNILALNAAVEAARAGQHGKGFA 367
Query: 352 VVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLM 411
VVA+EVRNLA S AA+ E E +E ++ TE G K+ ++ + L + V +
Sbjct: 368 VVAEEVRNLAARSANAAK-------ETTELIEGTIKRTENGTKIARETAEALNKIVEGIS 420
Query: 412 NIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQAS 471
L++D+ + + + + + ++ +A+++E+ A++EE+S+ A+
Sbjct: 421 KAATLVNDIAVASNEQAAAITQINQGIAQVSQVVQTNSATSEESAAASEELSSQAELLKR 480
Query: 472 SMEEVK 477
S+ + K
Sbjct: 481 SIAKFK 486
>pir||F70028 transmembrane receptor taxis protein homolog yvaQ - Bacillus
subtilis >gi|2635882|emb|CAB15374.1| (Z99121) similar to
transmembrane receptor taxis protein [Bacillus subtilis]
Length = 566
Score = 164 bits (410), Expect = 2e-39
Identities = 92/354 (25%), Positives = 192/354 (53%), Gaps = 1/354 (0%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLK-VHAKGDFESILNSMRKTISNLRELMKTVRD 198
I++++++ + + E I+EGD+S+D++ +++K + + +++K + NLR+++ +D
Sbjct: 206 ITRNIVKPIIRMKESANHIAEGDLSNDMEALNSKDELGDLNEALQKMVGNLRDIVGYSKD 265
Query: 199 LALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQR 258
++ + S + L ++E + E + +++ +++Q ++ I E MN + +
Sbjct: 266 ISSRVLSSSQVLATATNETRSGSKHITETMNEMAEGSEQQAQDAVTIAESMNEFTESIDK 325
Query: 259 TVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDI 318
+ S VL +A G + ++ Q++ I ++ V+ + + S+++ +
Sbjct: 326 AYNHGITISDTSQNVLELAVSGNENMATSLQQMKTIHHIVEEAVHKVRSLEQHSQDINKL 385
Query: 319 INAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEI 378
+ I IAEQTNLL+LNAAIEAARAGE G+GFAVVA+EVR LA+ ++ + I I+N
Sbjct: 386 VQVINGIAEQTNLLSLNAAIEAARAGESGKGFAVVAEEVRKLADGVSDSVQDITRIVNGT 445
Query: 379 QEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHV 438
Q+++ + E V+ + L +T + +I + + V ++++ + L
Sbjct: 446 QQEIHTVITYLESSFTEVEKGTENLTDTGQAMQHIKQSVTHVADSIKEVTDGLKQLTNQS 505
Query: 439 ENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
+++EN+A+ ++E+ A EE + ++ A SM++V N EL + +L E
Sbjct: 506 ITINQSIENIASVSEESAAGIEETFSITEQSAHSMDQVLLNAEELEQLANELNE 559
>pir||T44989 transducer protein trII [imported] - Haloarcula vallismortis
>gi|5921503|emb|CAB56464.1| (AJ249640) trII protein
[Haloarcula vallismortis]
Length = 773
Score = 163 bits (409), Expect = 3e-39
Identities = 124/495 (25%), Positives = 225/495 (45%), Gaps = 54/495 (10%)
Query: 50 VEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAE 109
V + RE Q+ L IG++ + V G +G+ + +T+ + ++ AE++A+
Sbjct: 273 VHSDREAAYALSDQINSDL---IGLILLAVVNLGLIGVTIGGNTIASLRRLSVKAEAMAD 329
Query: 110 GKLSRAREMVSKIQYREDDEIGKLIEGF----------------------------RAIS 141
G+L + +DE G L F +A
Sbjct: 330 GELD------VDLDTSREDEFGTLYAAFDNMRANLRTQISEAETAKQEAEAAKEQAQAAR 383
Query: 142 QDV---LQTLEIITERMEKISEGDVSDDLKVHAKGDF------ESILNSMRKTISNLREL 192
+DV +E +T +E + SD L A GD +S+ ++M + ++
Sbjct: 384 EDVESERNEMEALTGHLE-LKAQQYSDALDAAANGDLTARVKTDSMNDAMAEVGEDINTT 442
Query: 193 MKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNIT 252
+ + D +++ A ++ + S ++ +V A +QVS E TE EG+
Sbjct: 443 LDALEDTIADMKAFATNVIQSSDRVNSNAERVDRASKQVSKSINEIFEGTTEQNEGLESA 502
Query: 253 AD-------VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAV 305
A Q+ + ++ + + +G++ ++AI+++ I+ + +
Sbjct: 503 AAEMQNLSATAQQVASSAQQVADTSQSAAKVGEDGREAAQEAIAEMSAIEAETGETVEEI 562
Query: 306 QEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESK 365
+ + +G+I+ I I EQTN+LALNA+IEAA A G GFAVVA E++ LAEE+K
Sbjct: 563 NALDDELDEIGEIVGVITSIVEQTNMLALNASIEAAHADGDGEGFAVVADEIKGLAEETK 622
Query: 366 EAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQ 425
EAA I G + IQE+ VE E + + V ++ETV L I E ++V++ +Q
Sbjct: 623 EAAADIEGRIEAIQEQAGDTVETMESTSTRITEGVSTVEETVDALETIVEYTEEVDTGIQ 682
Query: 426 DIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
+I ++ +++L +Q+T A+ V+ +AQ+Q++S+EEV + ELR
Sbjct: 683 EIDRATEEQARTAQDVMGTIDDLTTISQQTATEADTVAGAAQDQSASIEEVSDSATELRQ 742
Query: 486 IVKKLREAVEFIKVE 500
L ++ VE
Sbjct: 743 RADDLESLLDRFTVE 757
>pir||A72428 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980507|gb|AAD35117.1|AE001690_11 (AE001690)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 161 bits (403), Expect = 2e-38
Identities = 105/390 (26%), Positives = 201/390 (50%), Gaps = 28/390 (7%)
Query: 105 ESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQ-DVLQTLEIITERMEKISEGDV 163
E +AEG+ + +V+ + + G +I +S V++ + E++++ EGD+
Sbjct: 267 ELLAEGRKATFGTIVTYVVF------GGVIFAVLFVSMMPVVKRMRQQVEKVKRFGEGDL 320
Query: 164 SDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQ 223
+ + + K + I S+++ + +L+E++ ++ + + L + ++ +S E +
Sbjct: 321 TVEFEAKGKDELTQIEESLKEAVLSLKEMIVSIIEASKELSGASEEIKVLSEESHKMSEN 380
Query: 224 VAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDK 283
+ E +++ EA +TE+ G+ A Q ++ + V AREG ++
Sbjct: 381 LHEEAKKILDEANNMSSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREGTER 440
Query: 284 GEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARA 343
E + ++ + + R ++E+ + +K +G+I++ I+ IAEQTNLLALNAAIEAARA
Sbjct: 441 VEAVGGVINKLKGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARA 500
Query: 344 GELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFL 403
GE GRGFAVVA E+R LAEES+ A E I +L+ ++ +E E G K + + VD
Sbjct: 501 GEAGRGFAVVADEIRKLAEESQRATEDIAKMLSSLR----ATIEHVENGSKEMFEGVD-- 554
Query: 404 KETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVS 463
I + ++V + ++I +E +EN AA+AQE A+AEE++
Sbjct: 555 --------EIAVMGEEVTKRFREILG-------RIEEINSMIENTAATAQEQGAAAEEMA 599
Query: 464 ASAQEQASSMEEVKRNIIELRDIVKKLREA 493
++ +E V ++ + +++ E+
Sbjct: 600 SAMDNVTKIVEGVVESLNRMESLIEDQTES 629
>pir||G72316 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981455|gb|AAD35999.1|AE001756_2 (AE001756)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 661
Score = 160 bits (401), Expect = 3e-38
Identities = 104/385 (27%), Positives = 199/385 (51%), Gaps = 28/385 (7%)
Query: 105 ESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQ-DVLQTLEIITERMEKISEGDV 163
E +AEG+ + +V+ + + G +I +S V++ + E++++ EGD+
Sbjct: 272 ELLAEGRKATLGTIVTYVVF------GGVIFAVLFVSMMPVVKRMRQQVEKVKRFGEGDL 325
Query: 164 SDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQ 223
+ + + + + I S+++ + +L+E++ ++ + A L + ++ +S E +
Sbjct: 326 TVEFEAKGEDELTQIEESLKEAVLSLKEMIVSIIEAAKELSGASEEIKVLSEESHKMSEN 385
Query: 224 VAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDK 283
+ E +++ EA +TE+ G+ A Q ++ + V AREG ++
Sbjct: 386 LHEEAKKILDEANNMSSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREGTER 445
Query: 284 GEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARA 343
E + ++ + + R ++E+ + +K +G+I++ I+ IAEQTNLLALNAAIEAARA
Sbjct: 446 VEAVGGVINKLKGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARA 505
Query: 344 GELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFL 403
GE GRGFAVVA E+R LAEES+ A E I +L+ ++ +E E G K + + VD
Sbjct: 506 GEAGRGFAVVADEIRKLAEESQRATEDIAKMLSSLR----TTIEHVENGSKEMFEGVD-- 559
Query: 404 KETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVS 463
I + ++V + ++I +E +EN AA+AQE A+AEE++
Sbjct: 560 --------EIAVMGEEVTKRFREILG-------RIEEINSMIENTAATAQEQGAAAEEMA 604
Query: 464 ASAQEQASSMEEVKRNIIELRDIVK 488
++ +E V ++ + +++
Sbjct: 605 SAMDNVTKIVEGVVESLNRMESLIE 629
>pir||T44938 transducer protein htpV [similarity] - Halobacterium salinarum
>gi|1621047|gb|AAB17519.1| (U53365) transducer HtI
protein [Halobacterium salinarum]
Length = 544
Score = 160 bits (401), Expect = 3e-38
Identities = 119/456 (26%), Positives = 217/456 (47%), Gaps = 30/456 (6%)
Query: 70 LSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDE 129
L+ G + V A+G +T+ + +M + E A+ + E + RE E
Sbjct: 76 LATGPLMATTVAVFAIGG---TATLAIVEDMEALVEERAQPRQEAEEERAEAERAREKAE 132
Query: 130 IGKLIEGFRAISQDVLQTLEIITER-MEKISEG------DVSDDLKVHAKGDFESILNSM 182
K E R ++ QT T+R +E+++ +V L+ + GD + +++
Sbjct: 133 -QKQAEAERQTAEAQSQTGRTGTQREIEQLAADLESQATEVGATLEAASDGDLTARVDAT 191
Query: 183 RKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENI 242
+ + E+ V D+ T+E +++ S+ ++ A + +++ V +Q E++
Sbjct: 192 TDN-AEIAEVATVVNDMLTTMERTIDEIQGFSTNVTTASREATGGAKEIQVASQTVSESV 250
Query: 243 TEIMEGMNITADVTQRTVDAMEEFSGVVNEVLS--------------IAREGKDKGEKAI 288
EI G + + + + M+ +S V EV + +A GK E AI
Sbjct: 251 QEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTAADTTDVATAGKQTAEDAI 310
Query: 289 SQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGE--- 345
++ +Q+ M+ V + +++ + DI I+DIAEQTN+LALNA IEAARAG
Sbjct: 311 DAIDAVQETMQTTVANVDALEDLTTEIDDIAELISDIAEQTNMLALNANIEAARAGSGGG 370
Query: 346 -LGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLK 404
G GFAVVA EV+ LA ES+ +A+ I ++ E+Q + VEE + V+D ++
Sbjct: 371 TNGDGFAVVADEVKELATESQRSAKDIAELIEEVQSQTATTVEEIRVAEQRVNDGAAAVE 430
Query: 405 ETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSA 464
ETV + E + + +Q+I + + E +++++A +Q T AE VSA
Sbjct: 431 ETVDAFGAVTENIQETTDGVQEISQAMDEQAQRSERVVSSVDDIATISQATADRAENVSA 490
Query: 465 SAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
+++EQ +S+ EV ++ L L + + + E
Sbjct: 491 ASEEQTASITEVTGSLQSLAAQADTLEDRLNEFRTE 526
>sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1364151|pir||S55296
sensory rhodopsin II transducer protein - Haloarcula
vallismortis (fragment) >gi|516322|emb|CAA84549.1|
(Z35308) transducer of sensory rhodopsin II [Haloarcula
vallismortis]
Length = 433
Score = 160 bits (400), Expect = 4e-38
Identities = 107/414 (25%), Positives = 205/414 (48%), Gaps = 20/414 (4%)
Query: 98 NEMAKIAESIAEGKLSRAREMVSKIQY---REDDEIGKLIEGFRAISQDVLQTLEIITER 154
N A + I+E + ++ +K Q RED E + A++ + + ++
Sbjct: 13 NMRANLRTQISEAETAKQEAEAAKEQAQAAREDVESER--NEMEALTGHLELKAQQYSDA 70
Query: 155 MEKISEGDVSDDLKVHAKGD--------FESILNSMRKTISNLRELMKTVRDLALTLESR 206
++ + GD++ +K + D + L+++ TI++++ V + + S
Sbjct: 71 LDAAANGDLTARVKTDSMNDAMAEVGEDINTTLDALEDTIADMKAFATNVIQSSDRVNSN 130
Query: 207 ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEF 266
A + R S ++S++IN++ E + E E+ M+ ++ TA Q+ + ++
Sbjct: 131 AERVDRASKQVSKSINEIFEG----TTEQNEGLESAAAEMQNLSATA---QQVASSAQQV 183
Query: 267 SGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIA 326
+ + +G++ ++AI+++ I+ + + + + +G+I+ I I
Sbjct: 184 ADTSQSAAKVGEDGREAAQEAIAEMSAIEAETGETVEEINALDDELDEIGEIVGVITSIV 243
Query: 327 EQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAV 386
EQTN+LALNA+IEAA A G GFAVVA E++ LAEE+KEAA I G + IQE+ V
Sbjct: 244 EQTNMLALNASIEAAHADGDGEGFAVVADEIKGLAEETKEAAADIEGRIEAIQEQAGDTV 303
Query: 387 EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALE 446
E E + + V ++ETV L I E ++V++ +Q+I ++ ++
Sbjct: 304 ETMESTSTRITEGVSTVEETVDALETIVEYTEEVDTGIQEIDRATEEQARTAQDVMGTID 363
Query: 447 NLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
+L +Q+T A+ V+ +AQ+Q++S+EEV + ELR L ++ VE
Sbjct: 364 DLTTISQQTATEADTVAGAAQDQSASIEEVSDSATELRQRADDLESLLDRFTVE 417
>pir||E72379 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980935|gb|AAD35514.1|AE001721_13 (AE001721)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 159 bits (399), Expect = 5e-38
Identities = 104/387 (26%), Positives = 199/387 (50%), Gaps = 28/387 (7%)
Query: 103 IAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQ-DVLQTLEIITERMEKISEG 161
+ E +AEG+ + +V+ + + G +I +S V++ + E++++ EG
Sbjct: 265 LEELLAEGRKATLGTIVTYVVF------GGVIFAVLFVSMMPVVKRMRQQVEKVKRFGEG 318
Query: 162 DVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAI 221
D++ + + + + I S+++ +L+E++ ++ + A L + ++ +S E +
Sbjct: 319 DLTVEFEAKGRDELTQIEESLKEAALSLKEMIVSIIEAAKELSGASEEIKVLSEESHKMS 378
Query: 222 NQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGK 281
+ E +++ EA +TE+ G+ A Q ++ + V AREG
Sbjct: 379 ENLHEEAKKILDEANNMSSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREGT 438
Query: 282 DKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAA 341
++ E + ++ + + R ++E+ + +K +G+I++ I+ IAEQTNLLALNAAIEAA
Sbjct: 439 ERVEAVGGVINKLKGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAA 498
Query: 342 RAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVD 401
RAGE GRGFAVVA E+R LAEES+ A E I +L+ ++ +E E G K + + VD
Sbjct: 499 RAGEAGRGFAVVADEIRKLAEESQRATEDIAKMLSSLR----TTIEHVENGSKEMFEGVD 554
Query: 402 FLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEE 461
I + ++V + ++I +E +EN AA+AQE A+AEE
Sbjct: 555 ----------EIAVMGEEVTKRFREILG-------RIEEINSMIENTAATAQEQGAAAEE 597
Query: 462 VSASAQEQASSMEEVKRNIIELRDIVK 488
++++ +E V ++ + +++
Sbjct: 598 MASAMDNVTKIVEGVVESLNRMESLIE 624
>gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium sp. NRC-1]
Length = 536
Score = 159 bits (398), Expect = 6e-38
Identities = 107/437 (24%), Positives = 217/437 (49%), Gaps = 10/437 (2%)
Query: 72 IGVMSI--VAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQ-YREDD 128
IGV++I IS ++ N+ + A+ A+ A+ + ++A+E ++ Q RE+
Sbjct: 78 IGVVAISSTGTISIVEDLKTSNARAHRRRKDAEQAKRRADEQRAQAQEAKAEAQDAREEA 137
Query: 129 EI--GKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILN---SMR 183
E KL E + + + MEK + GD++ ++ ++ D +++ +
Sbjct: 138 ETLAAKLQERAAERDAQLSKKASEYSSVMEKAASGDLT--VRANSSSDSDAMTEVGQAFN 195
Query: 184 KTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENIT 243
+ I+ E++ R+ A + + D+ EI A QVAE++Q++S R+ +
Sbjct: 196 EMIAAFEEMVARTREFAGDVADNSRDIHASVDEIEAASEQVAESVQEISAGTDREHTRLA 255
Query: 244 EIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQ 303
+ + + + + + + + V ++ R+G D A++Q+ DIQ + +
Sbjct: 256 DATDELQSLSGAVEEVAASASQVADVSDQAADRGRQGSDDAAAAVTQMTDIQSETEAVVS 315
Query: 304 AVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEE 363
+A ++ + +++ I DI +QT+LLALNA+IEAARA + G GFAVVA EV+ LAEE
Sbjct: 316 EANALAAEAQEIRRVVDLINDITDQTHLLALNASIEAARADQDGDGFAVVAAEVKELAEE 375
Query: 364 SKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESK 423
+ EA ++I +++ + + V+++E+ V + ++ + L IG+ + DV
Sbjct: 376 TNEATDEIETLVDNLLSSTQSVVDDSEQMAATVSSGTETVENALTALEEIGDHVTDVNEA 435
Query: 424 LQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIEL 483
+Q I + + +E + +++ ++ A VSA+AQ+Q +S+ +V + L
Sbjct: 436 VQQIDDATDAQAASADTTVSMIEEIEDISEQNSSEAASVSAAAQQQTASLSDVTDGVTRL 495
Query: 484 RDIVKKLREAVEFIKVE 500
D L++ + V+
Sbjct: 496 VDRADTLQDVLTGFTVD 512
>sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|11277601|pir||T46811
halobacterial transducer protein V [imported] -
Halobacterium salinarum >gi|1435132|emb|CAA64842.1|
(X95589) halobacterial transducer protein V
[Halobacterium salinarum] >gi|10581214|gb|AAG19985.1|
(AE005080) Htr7 transducer; Htr7 [Halobacterium sp.
NRC-1]
Length = 545
Score = 158 bits (395), Expect = 1e-37
Identities = 100/405 (24%), Positives = 195/405 (47%), Gaps = 6/405 (1%)
Query: 101 AKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISE 160
A+ A AE K + A ++ + + D + E ++ D+ + +E S+
Sbjct: 124 AERAREKAEQKQAEAERQTAEAESAKQDARERSAE-IEQLAADLESQATEVGATLEAASD 182
Query: 161 GDVSDDLKVHA-KGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISE 219
GD++ + + + + ++ + + ++ + + + + + T + EI +
Sbjct: 183 GDLTARVDATTDNAEIAEVATVVNDMLTTMERTIDEIQGFSTNVTTASREATAGAKEIQD 242
Query: 220 AINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIARE 279
A V+E++Q+++ Q+E + + E M+ + + + + + +A
Sbjct: 243 ASQTVSESVQEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTAADTTDVATA 302
Query: 280 GKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIE 339
GK E AI ++ +Q+ M+ V + +++ + DI I+DIAEQTN+LALNA IE
Sbjct: 303 GKQTAEDAIDAIDAVQETMQTTVANVDALEDLTTEIDDIAELISDIAEQTNMLALNANIE 362
Query: 340 AARA----GELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKV 395
AARA G G GFAVVA EV+ LA ES+ +A+ I ++ E+Q + VEE +
Sbjct: 363 AARAGSGGGSNGDGFAVVADEVKELATESQRSAKDIAELIEEVQSQTATTVEEIRVAEQR 422
Query: 396 VDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQET 455
V+D ++ETV + E + + +Q+I + + E +++++A +Q T
Sbjct: 423 VNDGAAAVEETVDAFGAVTENIQETTDGVQEISQAMDEQAQRSERVVSSVDDIATISQAT 482
Query: 456 TASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
AE VSA+++EQ +S+ EV ++ L L + + + E
Sbjct: 483 ADRAENVSAASEEQTASITEVTSSLQSLAAQADTLEDRLNEFRTE 527
>pir||T44606 transducer protein htpIV [similarity] - Halobacterium salinarum
>gi|1654427|gb|AAB17884.1| (U75439) transducer HtF
protein [Halobacterium salinarum]
Length = 804
Score = 157 bits (393), Expect = 2e-37
Identities = 110/403 (27%), Positives = 197/403 (48%), Gaps = 25/403 (6%)
Query: 115 AREMVSKIQY------REDDEIGKLIEGFRAISQDVLQTLEIITERMEKI----SEGDVS 164
ARE ++ Q R ++ + E +A ++ + LE ER + ++GD++
Sbjct: 399 AREQATEAQQDAEADARRAEDARERAEDAKADAEALAAELEAQAERYSDVIGGVADGDLT 458
Query: 165 -----DDLKVHAKGDFESILNSMR--KTISNLRELMKTVRDLALTLESRANDLTRISSEI 217
DD A + N + TI +++E V + E A D R S ++
Sbjct: 459 RRMPADDTDNEAMAAIAASFNDSQWEHTIIDIQEFADAVATASEEAEVGAADAERASGQV 518
Query: 218 SEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIA 277
SE++ ++A A + Q N+ + + G V + + + ++ IA
Sbjct: 519 SESVQEIAGAADE--------QRNMLDTVSGEMTDLSAAIEEVASADSVAEHSHQTAEIA 570
Query: 278 REGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAA 337
R+G+ E AI + +Q+A+ Q V+ + + + +I++ I+DIAEQTN+LALNA
Sbjct: 571 RDGEQTAEDAIERSLTVQEAIDATVQNVEALDDQMAEISEIVDLISDIAEQTNMLALNAN 630
Query: 338 IEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVD 397
IEAARA + G GFAVVA EV++ AEE++E+A I + E+Q + V E + +D
Sbjct: 631 IEAARADKSGDGFAVVADEVKDFAEETQESAGDIERRITEVQSQTTATVAEARAAEESMD 690
Query: 398 DSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTA 457
+D ++E V + + D+ ++ +Q+I + + E A E +A + T
Sbjct: 691 AGIDAVEEVVDAFTAVSDHSDETDTGVQEISDTTDDQAASTEEAVSMTEEVADLSDSTAG 750
Query: 458 SAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
A+ VSA+A+EQA+SM E+ + L ++L+ + +V+
Sbjct: 751 EAQSVSATAEEQAASMSEISDTVESLSGQAEQLKALLSEFEVD 793
>pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - Bacillus
subtilis >gi|2619023|gb|AAB84447.1| (AF027868) YoaH
[Bacillus subtilis] >gi|2634254|emb|CAB13753.1| (Z99114)
similar to methyl-accepting chemotaxis protein [Bacillus
subtilis]
Length = 534
Score = 155 bits (388), Expect = 9e-37
Identities = 114/382 (29%), Positives = 188/382 (48%), Gaps = 48/382 (12%)
Query: 142 QDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLAL 201
+ ++ L I +++E+I+ G+ KV K E LA
Sbjct: 175 KSIMVPLRSINKQLEEIAHGEADLTKKVIVKNKDE-------------------FGQLAQ 215
Query: 202 TLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD------- 254
+ S + LT+I +IS + QVA + +++S A+ + I M + AD
Sbjct: 216 SFNSFTHSLTQIVKQISSSSEQVAASSEELSASAEESKSTSEHISRAMQMAADSNVKQSS 275
Query: 255 VTQRTVDAMEEFSGVVNEVLS-------IAREGKDKGEKAISQVEDIQDAMKVIRQAV-- 305
+T+++ +++ E ++ V S ++ +DK E V + D MK I ++V
Sbjct: 276 MTEKSAESITELLDSISSVASNTGNIADLSSSMRDKAEIGSKSVNKMLDQMKFIDKSVDS 335
Query: 306 -----QEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL 360
Q + + + DI + I I+EQTNLLALNAAIEAARAGE G+GFAVVA+EVR L
Sbjct: 336 AGNGLQTLVASTAEISDISSLITTISEQTNLLALNAAIEAARAGEQGKGFAVVAEEVRKL 395
Query: 361 AEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVD----FLKETVGYLMNIGEL 416
A+E+ ++A I+ ++ IQ + ET +KVV ++V +ET G I L
Sbjct: 396 ADETNKSANHIQSVVATIQNE----SIETVNNIKVVQENVSSGIVLSQETTGNFNEILNL 451
Query: 417 LDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEV 476
++ V S++Q++ VE + + LAA +ET+A+ E V+ S+QEQ SM E+
Sbjct: 452 VEQVTSQIQEVAAATQQLTSGVEVIQHTVHTLAAGTKETSANTEAVANSSQEQLHSMGEI 511
Query: 477 KRNIIELRDIVKKLREAVEFIK 498
L + ++L+ + K
Sbjct: 512 SYAAESLSQLAEELQTVINRFK 533
>gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archaeoglobus
fulgidus] >gi|7483867|pir||B69379 methyl-accepting
chemotaxis protein (tlpC-1) homolog - Archaeoglobus
fulgidus >gi|2649560|gb|AAB90209.1| (AE001032)
methyl-accepting chemotaxis protein (tlpC-1)
[Archaeoglobus fulgidus]
Length = 677
Score = 155 bits (388), Expect = 9e-37
Identities = 121/387 (31%), Positives = 200/387 (51%), Gaps = 46/387 (11%)
Query: 117 EMVSKIQYREDDEIGKLIEGFRAISQDVLQT---LEIITERMEKISEGDVSDDLKVHAKG 173
EMV I D I +L E + I + + T L +++ + ++ G++ L+
Sbjct: 269 EMVGVIDLFTD--ITELREKEKEIEEMLAYTGRCLNMLSNGIRELQAGNLDVRLEKIRDD 326
Query: 174 DFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSV 233
+F + + ++E+ VR LA ++ AN + E +EA+NQ+ +QQ+S
Sbjct: 327 EFGETFEAFNEFAGRMQEI---VRKLADDMKETANQVR----EAAEAVNQMNAGMQQISS 379
Query: 234 EAQR---QQENIT--------------EIMEGMNITADVTQRTVDAMEEFSGVVNEVLSI 276
+Q+ EN++ EI + AD + R V+A E S + +
Sbjct: 380 ASQQIATGSENLSRLANASTLDLKAAEEIFRELAAKADESNRQVEAAAERSRIAEQ---- 435
Query: 277 AREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNA 336
EG E S V+++++A KV+ Q V +N+G + I IA+QTNLLALNA
Sbjct: 436 --EGGRALEIIKSIVQEVENASKVVETLEQAV----RNIGKVTERIKSIADQTNLLALNA 489
Query: 337 AIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEK----- 391
AIEAARAGE GRGFAVVA EVR LAEES+++ E+I I+ +QE+ K +E T K
Sbjct: 490 AIEAARAGEHGRGFAVVADEVRKLAEESRKSTEEIDEIVRNVQEETRKVIEATNKVKESS 549
Query: 392 --GVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLA 449
G + ++ ++ E +G + I +++ V SK ++ ++ + E E A
Sbjct: 550 LQGSEGIEAAIKQAGEILGAINRINDMVKAVASKAEEGLAKIEQLARNFEEVASTAEENA 609
Query: 450 ASAQETTASAEEVSASAQEQASSMEEV 476
AS++ET+A+ EE +A+ Q+ + +ME+V
Sbjct: 610 ASSEETSAAIEEQTAAVQQVSIAMEKV 636
>gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archaeoglobus
fulgidus] >gi|7483868|pir||E69380 methyl-accepting
chemotaxis protein (tlpC-2) homolog - Archaeoglobus
fulgidus >gi|2649548|gb|AAB90198.1| (AE001031)
methyl-accepting chemotaxis protein (tlpC-2)
[Archaeoglobus fulgidus]
Length = 834
Score = 154 bits (386), Expect = 2e-36
Identities = 103/358 (28%), Positives = 190/358 (52%), Gaps = 22/358 (6%)
Query: 148 LEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRA 207
L +++ + ++ G++ L+ +F + + ++E+ VR LA ++ A
Sbjct: 458 LNMLSNGIRELQAGNLDVRLEKIRDDEFGETFEAFNEFAGRMQEI---VRKLADDMKETA 514
Query: 208 NDLTRISSEISEAINQVAEAIQQVSVEAQR---QQENITEIMEGMNITADVTQRTVDAM- 263
N + E +EA+NQ+ +QQ+S +Q+ EN++ + + + +
Sbjct: 515 NQVR----EAAEAVNQMNAGMQQISSASQQIATGSENLSRLANASTLDLKAAEEIFKDLT 570
Query: 264 ---EEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIIN 320
E + +E A K +G KA+ ++ I ++ + V+ + + +N+G +
Sbjct: 571 ARAENSAKFADEASQNAEMAKKEGVKALEIIKSIVQEVENASKVVETLEQAVRNIGKVTE 630
Query: 321 AIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQE 380
I IA+QTNLLALNAAIEAARAGE GRGFAVVA EVR LAEES+++ E+I I+ +QE
Sbjct: 631 RIKSIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEESRKSTEEIDEIVRNVQE 690
Query: 381 KVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEH--- 437
+ K +E T KV + S+ + LM GE+ + V +++ ++ ++A E
Sbjct: 691 ETRKVIEATN---KVKESSLQGSEGIENALMKAGEIAEAV-NRINEMLGQVAAKAEEGLA 746
Query: 438 -VENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAV 494
+E + E +A++A+E AS+EE SA+ +EQ +++++V + ++ +I + +
Sbjct: 747 KIEQLARNFEEVASTAEENAASSEETSAAIEEQTAAVQQVSIAMEKVNEIANATLQTI 804
>gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium salinarum]
Length = 792
Score = 154 bits (385), Expect = 2e-36
Identities = 99/381 (25%), Positives = 194/381 (49%), Gaps = 15/381 (3%)
Query: 128 DEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDF------------ 175
DE + E R +++ E + ER+E+ + + SD++ A GD
Sbjct: 400 DEAREDAEQTRKDAEEARAASERLNERLERRA-AEYSDEMAAAAAGDLTRRLDEDVDSDG 458
Query: 176 -ESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVE 234
+ I + + ++ + VR +A +++ + D+ ++EI A +QV+E++Q +S +
Sbjct: 459 MQDIAEAFNDMMGDVEATLAQVRSIADAVDAASTDV-HDAAEIRSASDQVSESVQDISAD 517
Query: 235 AQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDI 294
A+ Q++ + + + ++ + + VN+ + + G++ GE A++++E I
Sbjct: 518 AEEQRDRLGTVGDEVHALSATVEDIAARPTTSPSTVNQAATESERGQELGEDAVAELERI 577
Query: 295 QDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVA 354
+ + V + E +G + I DIAEQTN+LALNA IEAARA + G GFAVVA
Sbjct: 578 EATADSAVERVTALEEAVDAIGHVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVA 637
Query: 355 QEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIG 414
EV++LA+E KE+A +I +++++Q V V + + VD + ++ + + +IG
Sbjct: 638 DEVKDLADEVKESATEIETLVDDVQADVADTVADMSELGDRVDAGSETIEAALAAVDDIG 697
Query: 415 ELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
+ ++ +Q I + E ++ + + T +++VSA+A+EQA+S+
Sbjct: 698 DQVEAANGSVQSISDATDEQAASTEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVS 757
Query: 475 EVKRNIIELRDIVKKLREAVE 495
EV +L D V L + ++
Sbjct: 758 EVAGRADDLDDQVSTLNDLLD 778
Score = 74.5 bits (180), Expect = 2e-12
Identities = 100/461 (21%), Positives = 192/461 (40%), Gaps = 67/461 (14%)
Query: 77 IVAVISGAL--GMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLI 134
+V + G L G+ + T ++E+A +A ++ +G L + DE+G+L+
Sbjct: 290 VVVALVGLLLVGLTVGRRTSSALDELAGVAAAMRDGDLDTTIPDTDRT-----DELGQLV 344
Query: 135 EGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMK 194
F + + ++ + DV D+ A G S ++ + I++L E +
Sbjct: 345 GAFGEMQTYLTTAASQADALADQNFDADVLDEDLPGAFGASLSQMHRLEALITDLDEARE 404
Query: 195 TVRDL------ALTLESRAND-LTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIME 247
A R N+ L R ++E S+ + A ++ + + +I E
Sbjct: 405 DAEQTRKDAEEARAASERLNERLERRAAEYSDEMAAAAAGDLTRRLDEDVDSDGMQDIAE 464
Query: 248 GMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQE 307
N D M + + +V SIA + D + +I+ A + ++VQ+
Sbjct: 465 AFN----------DMMGDVEATLAQVRSIA-DAVDAASTDVHDAAEIRSASDQVSESVQD 513
Query: 308 VAEMSK-------NVGDIINAIA----DIAEQ--TNLLALN-AAIEAARAGELGRGFAVV 353
++ ++ VGD ++A++ DIA + T+ +N AA E+ R ELG
Sbjct: 514 ISADAEEQRDRLGTVGDEVHALSATVEDIAARPTTSPSTVNQAATESERGQELGEDAVAE 573
Query: 354 AQEVRNLA----------EESKEAAEKIRGILNEIQEK---------VEKA-VEETEKGV 393
+ + A EE+ +A + G++ +I E+ +E A +++ G
Sbjct: 574 LERIEATADSAVERVTALEEAVDAIGHVTGVITDIAEQTNMLALNANIEAARADKSGDGF 633
Query: 394 KVVDDSV-DFLKETVGYLMNIGELLDDVESKLQDIKNELANT-------QEHVENAKKAL 445
VV D V D E I L+DDV++ + D +++ E +E A A+
Sbjct: 634 AVVADEVKDLADEVKESATEIETLVDDVQADVADTVADMSELGDRVDAGSETIEAALAAV 693
Query: 446 ENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDI 486
+++ + S + +S + EQA+S EEV I E+ D+
Sbjct: 694 DDIGDQVEAANGSVQSISDATDEQAASTEEVVTMIDEVTDL 734
>dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 579
Score = 154 bits (385), Expect = 2e-36
Identities = 102/426 (23%), Positives = 212/426 (48%), Gaps = 23/426 (5%)
Query: 97 INEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFR------------------ 138
I A +A ++ + ++E+ Q+R D EI + + F+
Sbjct: 154 IASYADLASDMSHAIVDESQELSEVTQHRVDREIVENEKMFQRVTLVVLIVCGLILLLLI 213
Query: 139 ----AISQDVLQTLEIITERMEKISEGDVS-DDLKVHAKGDFESILNSMRKTISNLRELM 193
+S+ V++ + +++E + I+EG+++ + LKV + + + S + NLR+++
Sbjct: 214 FIGWVVSRMVVKPVVMVSEAAKVIAEGNLTVEPLKVKNRDEIGDLAASFNLMVENLRKII 273
Query: 194 KTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITA 253
V + A + + + LT + E S+ Q+ +Q V+ Q E + + + +
Sbjct: 274 LEVGNNAEQVAASSEQLTASAEETSKITEQIVSTVQTVTQGVDNQVEKVEYTHKIVGDMS 333
Query: 254 DVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSK 313
+ ++ + +E S E + GK E + Q+ I ++ + + ++ + + SK
Sbjct: 334 EDIRKIAENAKEVSTTSMEASEKSSAGKQVIETLVKQMTLINQSVSGLDEIIKGMRDNSK 393
Query: 314 NVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRG 373
+ I+ I +I++QTNLLALNAAIEAARAGE G+GF+VVA EVR LAE++ +A++I
Sbjct: 394 EINQIVKVITEISDQTNLLALNAAIEAARAGEAGKGFSVVADEVRKLAEQTSLSAKQISN 453
Query: 374 ILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELAN 433
+++ +Q++ ++AV+ E + V + +I + + +V ++Q++ + +
Sbjct: 454 LISNVQKETDQAVQSMETTTEEVVSGMGLADTAGESFEHINQTVSEVTRQIQNVSDSVQK 513
Query: 434 TQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
+ ++ + ++ + EV+AS +EQ ++MEEV L + ++L+E
Sbjct: 514 VATGTRQMVETIDIVNDVSESSAKGMNEVAASTEEQMATMEEVAAASATLAKMAEELQEL 573
Query: 494 VEFIKV 499
+ KV
Sbjct: 574 IGRFKV 579
>dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 671
Score = 154 bits (385), Expect = 2e-36
Identities = 83/361 (22%), Positives = 187/361 (50%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
+++ + + + + + ++ GD++ D++ + + S ++ + LR ++ TV+
Sbjct: 306 VARSITKPISRLGTHVGTVASGDLTVDVRAAGNDEVGQLTESFKEMLVQLRGIITTVKGS 365
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
++ A+ LT IS E + ++A A++ V++ + +Q E++ E ++ A ++
Sbjct: 366 TAHVQEAADHLTAISEETIASSEEIALAVRDVAIGSTKQVEHLDEAKRQIDQLARQMEQM 425
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
+M E + NE + G +K + ++ + + + ++++ + ++I
Sbjct: 426 SLSMTEVGSLSNETRLAGQSGSEKVQHLKTKTLEANTVFDQMEDGLLKLSDHIMEINEVI 485
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
+ I ++EQTNLLALNA+IEAARAGE G+GFAVVA EVR LAE+S ++ + I
Sbjct: 486 HTINHLSEQTNLLALNASIEAARAGEHGKGFAVVANEVRRLAEQSSHETVRVGDTITGIV 545
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
+ ++ + + ++ ++ + D + ET +++ L+ + L ++ + E
Sbjct: 546 NRSKQVIVDMKQARSILSEQSDSVDETENTFLHMASLIKQMNETLASVQEDFGTLAEQNS 605
Query: 440 NAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
K +E + A++ A++EEV+AS EQ ++++ + +L++ +L ++V +
Sbjct: 606 QFVKRIEAVVEVAEQAAATSEEVNASTDEQVTALQRITEAAEQLQEASHELNQSVRQFQT 665
Query: 500 E 500
E
Sbjct: 666 E 666
>gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium sp. NRC-1]
Length = 628
Score = 152 bits (381), Expect = 6e-36
Identities = 115/480 (23%), Positives = 231/480 (47%), Gaps = 15/480 (3%)
Query: 20 LTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAI---RETLENAKSQLKETLWLSIGVMS 76
L I Q AI+D NL++ +Q G ++ I R + KS L+ +I +S
Sbjct: 155 LREITTQTAAIAD--GNLDQE---IQDNGRIDEIGRVRSGFRDIKSYLQTVEGQAIA-LS 208
Query: 77 IVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEG 136
+ L + + + M E+ E L+ ARE + Q D E + E
Sbjct: 209 QQDFDNDVLDDEVPGTLGESLTAMQTDLETFIED-LTDAREEAERSQ--RDAEQSR--EE 263
Query: 137 FRAISQDVLQTLEIITERMEKISEGDVSDDLKVHA-KGDFESILNSMRKTISNLRELMKT 195
+A++ + + E + +M++ ++GD++ L + I + + L L+
Sbjct: 264 AQALADSLERQAERFSTQMQQAADGDLTQRLDTDVDRESLAQIATAFNDMLVQLEALVDR 323
Query: 196 VRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADV 255
++ A ++ R + ++ + EI ++ VA++I+Q+S A+ Q E +T M +
Sbjct: 324 IQATANAVDDRTHAMSASTDEIEQSSMSVAKSIEQISAGAENQNEKLTAAAGEMTDLSAT 383
Query: 256 TQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNV 315
+ + + + ++ ++G+ AI++++ I+ + +Q + E +
Sbjct: 384 VEEIASSSNNVAQQAEDAAAMGQDGQAAATDAIAEMDAIESKATQTVEEMQSLQEEVGRI 443
Query: 316 GDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGIL 375
DI+ I DIA QT++LA+NA+IEA A G GFAVVA EV++LAE++ A +++ ++
Sbjct: 444 SDIVTMIDDIASQTDMLAINASIEAENASTSGDGFAVVADEVKSLAEDTATATDEVESLI 503
Query: 376 NEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQ 435
E++ E+ + V D D + +T L +I + ++D + +Q I + +
Sbjct: 504 AEVEASTSALAEDMYEMRDRVGDGQDTITDTAALLEDIVDRVEDANAGIQSINDATEDQA 563
Query: 436 EHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVE 495
V+ A + +E +A+ + +T A VSA+A+EQ S+++E+ ++ L+ +L + E
Sbjct: 564 ASVQEATRMVEEVASVSDQTAGEASNVSAAAEEQTSAIQEISQSAQSLQTQATELLDRAE 623
>sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|11277604|pir||T48897
transducer protein VI (htp6, htD) [imported] -
Halobacterium salinarum >gi|1435134|emb|CAA64843.1|
(X95590) halobacterial transducer protein VI
[Halobacterium salinarum]
Length = 778
Score = 151 bits (378), Expect = 1e-35
Identities = 118/483 (24%), Positives = 218/483 (44%), Gaps = 63/483 (13%)
Query: 62 SQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSK 121
S + E + L +G+ V + + L T+R +N++ A ++ G E +
Sbjct: 292 SNMAENVLLILGIALAGLVF---IALTLGRGTVRALNDLEAKAAALERG------EYDTD 342
Query: 122 IQYREDDEIGKLIEGFRAISQDVLQTLEIITE---------------------------- 153
+ DE+G+L E F ++ V + E
Sbjct: 343 LDVARVDELGRLFEAFASLRDTVQARIRDANEQQVDAEAARSEAEAAQADAEAAQAEAEA 402
Query: 154 ----------RMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
R+E +E S+ ++ +A GD L++ + + + ++ ++A +
Sbjct: 403 AREESEAQARRLETTAEA-FSETMRAYAAGDLTVRLDADVEQAA-MADIAAAFNEMAADM 460
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAM 263
E+ D R + E++ A +++ V + + + I + D +
Sbjct: 461 EATIADAGRFADEVATASTDASDSAAAVEQTGRDVSDAVGRIRDRAADQRDQLEAVASET 520
Query: 264 EEFSGVVNEVLSIARE--------------GKDKGEKAISQVEDIQDAMKVIRQAVQEVA 309
+E S + EV + A + G+ + A++Q+E+I+D + AV ++
Sbjct: 521 DEMSATIEEVAASADQVAETSQRAAALGDDGQAAAQDAVAQLEEIEDETQAAATAVDDLE 580
Query: 310 EMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
+ I+ AI DIAEQTN+LALNA IEAARA + G GFAVVA EV++LA+ESK +A
Sbjct: 581 AKMSEIETIVAAITDIAEQTNMLALNANIEAARADQDGDGFAVVADEVKDLADESKASAA 640
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKN 429
+I ++ E++ + E +V ++ + V D V+ + ET L I + + ++ +Q+I N
Sbjct: 641 EIEALVAEVRAQTETSVAAMDRIQERVSDGVETVSETERSLSEIAGRIAEADTGVQEISN 700
Query: 430 ELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKK 489
+ + V + A+ ++AA +ET AE + +A EQAS++ +V L +
Sbjct: 701 AMDDQAASVSDVTTAVGDVAALGEETATEAESTADAAAEQASTLSDVAAQTETLAEHAVA 760
Query: 490 LRE 492
LRE
Sbjct: 761 LRE 763
>pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synechocystis sp.
(strain PCC 6803) >gi|1652103|dbj|BAA17028.1| (D90902)
methyl-accepting chemotaxis protein [Synechocystis sp.]
Length = 869
Score = 151 bits (377), Expect = 2e-35
Identities = 112/435 (25%), Positives = 213/435 (48%), Gaps = 45/435 (10%)
Query: 75 MSIVAVISGALGMRLMNSTMRP-----INEMAKIAESIAEGKLSRAREMVSKIQYREDDE 129
++ + I+ A+G+ L+N + I+++ ESI EG + + + R +DE
Sbjct: 451 LAFLTAIATAIGVFLINRLLMQQIKSIIDDLQNQFESIYEGNFN------VRAKVRSEDE 504
Query: 130 IGKLIEGFRAISQDVLQTLEIITERM---EKISEG------DVSDDLKVHAKGDFE---- 176
+G L + F ISQ +L ER EK+ E + DD++ ++GD
Sbjct: 505 LGALTQRFNYISQVILTATSEAQERAATTEKVREKLQRQVIRLLDDVEGASRGDLTVQAE 564
Query: 177 -------SILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQ 229
++ ++ TI NLRE++ V++ A + + D SE+ +
Sbjct: 565 VTADELGAVADAFNLTIQNLREIVLQVKNAAKQVNNNCKD--------SESF------AR 610
Query: 230 QVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAIS 289
S +A R E + + + + + +R + E V + A +G + E+ +
Sbjct: 611 NNSSDALRMAEELAVTLNSVQLMTESIERVAENAREAEEVAHTSSLTALKGGEAVERTVG 670
Query: 290 QVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRG 349
+ I++ + + V+ +AE S+ + I+ I+ IA +TNLLALNA+I+AARAGE GRG
Sbjct: 671 GILQIRETVSETARKVKRLAEASQEISKIVAVISQIASRTNLLALNASIQAARAGEAGRG 730
Query: 350 FAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGY 409
FA+VA EVR LA+ S ++ ++I I+ +IQ + + E+G++ V D D +++
Sbjct: 731 FAIVADEVRQLADRSAKSLKEIEQIVLQIQSETGSVMTAMEEGIQQVIDVTDKSEQSKRA 790
Query: 410 LMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQ 469
L +I E+ + + + ++ I + QE+ ++++ +AQET+ ++ V+ S Q
Sbjct: 791 LEDIIEVSNRINTLVRSITADTVKQQENSGAVSNVMQSIELTAQETSQESQRVAGSLQTL 850
Query: 470 ASSMEEVKRNIIELR 484
S ++ ++ R
Sbjct: 851 VSISRDLLTSVERFR 865
>gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium sp. NRC-1]
Length = 643
Score = 151 bits (377), Expect = 2e-35
Identities = 90/362 (24%), Positives = 183/362 (49%), Gaps = 1/362 (0%)
Query: 139 AISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGD-FESILNSMRKTISNLRELMKTVR 197
A+++ + T M + ++GD+S L + D +I S + + ++ ++
Sbjct: 270 ALNERLEATANTYGAAMARAADGDLSVRLDPDVENDAMAAIAASFNEMLDETETTIREIQ 329
Query: 198 DLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQ 257
+A + + + D EI +A QV+E +Q+++ A Q+E + + M + +
Sbjct: 330 AVASDVAAASEDADAGVVEIEDASGQVSETVQEIAAGADEQREKLETVSGEMTDLSAAIE 389
Query: 258 RTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGD 317
+ + + +E ++A +G+ E+AI+ +Q A++ Q V+ + + + +
Sbjct: 390 EVAASADSVAERSHETAAVAGDGEQTAEQAIADSRTVQSAVESTVQNVEALDDQLAEISE 449
Query: 318 IINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNE 377
I++ I+D+AEQTN+LALNA IEAARA + G GFAVVA EV++LAEE++ +A I ++ +
Sbjct: 450 IVDLISDVAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLAEETRASAGDIEALVAD 509
Query: 378 IQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEH 437
I +++ V E + V D++ + V + E ++ ++ +Q+I +
Sbjct: 510 IDAQMQATVTEARTADESVQDAISAVDAVVDAFGTVAENAEETDTGVQEISTTTDDQAAS 569
Query: 438 VENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFI 497
E A + ++ + T A A++ S +A++Q ++ + N LR+ +L+ V
Sbjct: 570 TEEAVSMIAEVSDISTATAADAQQASTAAEQQTTAAATISENTAALREQADRLQGLVSTF 629
Query: 498 KV 499
V
Sbjct: 630 DV 631
>gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium sp. NRC-1]
Length = 778
Score = 150 bits (375), Expect = 3e-35
Identities = 98/350 (28%), Positives = 175/350 (50%), Gaps = 7/350 (2%)
Query: 147 TLEIITERMEKISEGDVS----DDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALT 202
T E +E M + GD++ D++ A D + N M + + D T
Sbjct: 417 TAEAFSETMRAYAAGDLTVRLDADVEQAAMADIAAAFNEMAADMEATIADVVAFADEVAT 476
Query: 203 LESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDA 262
+ A+D + ++ I+ + + + Q E + + M+ T + + D
Sbjct: 477 ASTDASDSAAAVEQTGRDVSDAVGRIRDRAADQRDQLEAVASETDEMSATIEEVAASADQ 536
Query: 263 MEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAI 322
+ E S ++ +G+ + A++Q+E+I+D + AV ++ + I+ AI
Sbjct: 537 VAETS---QRAAALGDDGQAAAQDAVAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAI 593
Query: 323 ADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKV 382
DIAEQTN+LALNA IEAARA + G GFAVVA EV++LA+ESK +A +I ++ E++ +
Sbjct: 594 TDIAEQTNMLALNANIEAARADQDGDGFAVVADEVKDLADESKASAAEIEALVAEVRAQT 653
Query: 383 EKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAK 442
E +V ++ + V D V+ + ET L I + + ++ +Q+I N + + V +
Sbjct: 654 ETSVAAMDRIQERVSDGVETVSETERSLSEIAGRIAEADTGVQEISNAMDDQAASVSDVT 713
Query: 443 KALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
A+ ++AA +ET AE + +A EQA+++ +V L + LRE
Sbjct: 714 TAVGDVAALGEETATEAESTADAAAEQATTLSDVAAQTETLAEHAVALRE 763
>dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 678
Score = 149 bits (372), Expect = 7e-35
Identities = 91/354 (25%), Positives = 179/354 (49%), Gaps = 8/354 (2%)
Query: 151 ITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDL 210
+ +RM+++ +GD++ V ++ + + + + + LRE++ +R T A +L
Sbjct: 322 LNDRMQQVIKGDLTASADVKSQDEIGQLSDGFNQMVQTLREMIHALRQTGATSNKEAVEL 381
Query: 211 TRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVV 270
+ E + +VA + V+ A Q E I E + +D M++ + +
Sbjct: 382 RSMLQEAIASSEEVATSSTAVANGAVDQAEEI----EHAKSDIEKLSAQIDWMDQTASQI 437
Query: 271 NEVLS----IAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIA 326
NE+ + ++ G ++ E + E+ + ++ + V ++ + I+ I +
Sbjct: 438 NELAASTANVSASGLEQVETLREKTEEHERIIQKMEGIVNHFVHQTEEILSIVELIQSFS 497
Query: 327 EQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAV 386
EQTNLLALNA+IEAARAGE G+GF+VVA+E+R LAE+S +A I+ + +I+E A
Sbjct: 498 EQTNLLALNASIEAARAGEYGKGFSVVAEEIRKLAEQSTKATNNIQSAVQKIKESGAHAT 557
Query: 387 EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALE 446
EE K + V + +++ +I ++ V + ++ + +L E A A+
Sbjct: 558 EEMTKTAAQSAEQVKRVDQSIASFTHISSNIEQVVNSIKTVVKQLQTMNESRNQAVLAIN 617
Query: 447 NLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
N+A ++Q+T A+AE++SAS +E + + + + L + L + + KV+
Sbjct: 618 NIAGTSQDTAAAAEQISASIEELVNVLNTIGTSSERLNTLSDDLNKQAKAFKVQ 671
>sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >gi|7475621|pir||A69656
methyl-accepting chemotaxis protein mcpC - Bacillus
subtilis >gi|1280446|emb|CAA66052.1| (X97385)
methyl-accepting chemotaxis protein [Bacillus subtilis]
>gi|2633766|emb|CAB13268.1| (Z99111) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 654
Score = 148 bits (371), Expect = 9e-35
Identities = 95/361 (26%), Positives = 191/361 (52%), Gaps = 12/361 (3%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
+++ + ++ + + + +S GD++ + +K + + + N++E+++ VR
Sbjct: 295 LAKTITGPIQQLIVKTKAVSAGDLTVRAESKSKDEVGILTRDFNLMVENMKEMVEQVRLS 354
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ + + LT +++E +E Q+A+AI++V+ A Q + E +N ++
Sbjct: 355 SGKVSDTSEQLTAVAAETNERSGQIAKAIEEVAAGASEQASEV----ETINEKSESLSTK 410
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQV----EDIQDAMKVIRQAVQEVAEMSKNV 315
+ + E +G + E + + KG A+ Q+ + K + ++ +KN+
Sbjct: 411 IRQIAEEAGGIKERSKSSEDASYKGLHALGQLLMKSNEANMETKKEETMLLDLENQTKNI 470
Query: 316 GDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGIL 375
+++ AI++I++QTNLLALN +IEAARAGE GRGFAVVA EVR LAE+S + + I +
Sbjct: 471 EEVVTAISNISDQTNLLALNRSIEAARAGESGRGFAVVADEVRKLAEQSALSTKHISETV 530
Query: 376 NEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQ 435
IQ + ++A + ++ D+ + ET L I + + + I E+
Sbjct: 531 KLIQLETKEASHAMVEASRMNDEQNSAIHETGEVLNTITAEMQSLVQGIDHIYAEIQRMS 590
Query: 436 EHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELR----DIVKKLR 491
E +A+++++A +QE+ A+AEEV+AS EQ ++++VK + L+ D++ +R
Sbjct: 591 EEQLAISEAIQSISAISQESAAAAEEVNASTDEQLVTLDKVKHSTETLKHASQDVINTIR 650
Query: 492 E 492
+
Sbjct: 651 K 651
>gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus xanthus]
Length = 413
Score = 148 bits (369), Expect = 2e-34
Identities = 92/355 (25%), Positives = 181/355 (50%), Gaps = 3/355 (0%)
Query: 148 LEIITERMEKISEGDVSDDLKVHA---KGDFESILNSMRKTISNLRELMKTVRDLALTLE 204
+++++ +IS+GD+S + + + + + ++ + NLREL+ +++ A ++
Sbjct: 57 VKVLSRSAYEISQGDLSKPVAAEGGSKRDEIDELTGAITRMQENLRELVGKIQETAKSVA 116
Query: 205 SRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAME 264
A DL R + ++ + +V ++++++ A+ Q + +++ + + A QRT + E
Sbjct: 117 DTAIDLQRSAENVNGSTEEVGSSMEKIAGGAESQSQLVSKASKVITEMAGSIQRTTASAE 176
Query: 265 EFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIAD 324
+ + E S A +G A +V+ + + ++ Q V E ++ + I++AI
Sbjct: 177 DAARTTAETSSAAEDGSKAARLAGDKVKKVFNRIESASQQVFAFGEKTQEISKIVDAITQ 236
Query: 325 IAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEK 384
+A+QTNLLALNA IEAARAGE GRGFAVVA EVR LAE + +AE+I + +I +
Sbjct: 237 VAQQTNLLALNATIEAARAGEYGRGFAVVADEVRKLAESAGRSAEQISKLARDISGQSTS 296
Query: 385 AVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKA 444
V ++G+ + + + L V + I + + K+ I + E A
Sbjct: 297 VVSAMKEGIAELAEGREDLTNIVRSMGAITDTIRKGSEKVHLISESAREQLKGSEEMVTA 356
Query: 445 LENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
+E + A+ +S E + A QEQ +++ + EL ++ +L+ V ++
Sbjct: 357 IEEIKLVARNNASSTEAIQAVIQEQTAAVSRMTSLASELTNLSVELQSVVRSFRL 411
>sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >gi|2127141|pir||I40496
methylation enzyme tlpC - Bacillus subtilis
>gi|496484|emb|CAA83970.1| (Z34005) tlpC [Bacillus
subtilis]
Length = 573
Score = 147 bits (368), Expect = 2e-34
Identities = 102/366 (27%), Positives = 180/366 (48%), Gaps = 14/366 (3%)
Query: 141 SQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLA 200
++ + + L + E GD++ ++ + + K L + ++TV+ A
Sbjct: 208 TRKINKRLNALKSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSA 267
Query: 201 LTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTV 260
L L S + L+ + E ++A ++ EA+QQ++ AQ Q I E E A R +
Sbjct: 268 LQLASASQQLSAGAEETNQASEKITEAVQQIANGAQDQITRI-ENSESSLKQASADIRDI 326
Query: 261 DAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEM-------SK 313
A + + + +A+ D G+K I+ V+ DA I Q++Q+ E+ SK
Sbjct: 327 SAN---TAAIADKGQLAQSKADIGQKEIANVQAQMDA---IHQSIQKSGEIIHQLDGRSK 380
Query: 314 NVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRG 373
+ I++ I IA+QTNLLALNAAIEAARAGE G+GFAVVA EVR LAEES+++A +I
Sbjct: 381 QIEQILSVITQIADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISK 440
Query: 374 ILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELAN 433
++ EIQ+ + ++ E + V ++ T I ++ +++ D+ + N
Sbjct: 441 LIIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTN 500
Query: 434 TQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
+ A +E+T + + +A +EQ ++MEE+ L + ++L
Sbjct: 501 ISASAHQINDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGI 560
Query: 494 VEFIKV 499
+ K+
Sbjct: 561 ISQFKM 566
>dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein TlpC [Bacillus
subtilis] >gi|1805416|dbj|BAA08978.1| (D50453)
methyl-accepting chemotaxis protein of B. subtilis
[Bacillus subtilis] >gi|2632630|emb|CAB12138.1| (Z99105)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 573
Score = 147 bits (367), Expect = 3e-34
Identities = 98/366 (26%), Positives = 180/366 (48%), Gaps = 14/366 (3%)
Query: 141 SQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLA 200
++ + + L + E GD++ ++ + + K L + ++TV+ A
Sbjct: 208 TRKINKRLTALKSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSA 267
Query: 201 LTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTV 260
L L S + L+ + E ++A ++ EA+QQ++ AQ Q IT I N + + Q +
Sbjct: 268 LQLASASQQLSAGAEETNQASEKITEAVQQIANGAQDQ---ITRIE---NSESSLKQASA 321
Query: 261 DAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEM-------SK 313
D + + S + + + K + ++ ++Q M I Q++Q+ E+ SK
Sbjct: 322 D-IRDISANTAPIADKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQLDGRSK 380
Query: 314 NVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRG 373
+ I++ I IA+QTNLLALNAAIEAARAGE G+GFAVVA EVR LAEES+++A +I
Sbjct: 381 QIEQILSVITQIADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISK 440
Query: 374 ILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELAN 433
++ EIQ+ + ++ E + V ++ T I ++ +++ D+ + N
Sbjct: 441 LIIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTN 500
Query: 434 TQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
+ A +E+T + + +A +EQ ++MEE+ L + ++L
Sbjct: 501 ISASAHQINDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGI 560
Query: 494 VEFIKV 499
+ K+
Sbjct: 561 ISQFKM 566
>gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis protein
[Desulfovibrio gigas]
Length = 649
Score = 147 bits (367), Expect = 3e-34
Identities = 122/457 (26%), Positives = 218/457 (47%), Gaps = 38/457 (8%)
Query: 19 VLTAIIIQNIA-ISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSI 77
V+T ++ +A + L D L M + E + +E ++ IGV +
Sbjct: 145 VITDFVLNRVAPLGVLPDQLLSDM-AEENRNEAEKAAAQAHGVYLEARERMFWVIGVAVL 203
Query: 78 VAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGF 137
+ + SG RL++ R + + ++A+++A G L++ ++ R+ DEIG++ E
Sbjct: 204 LGLASGVFLSRLIS---RGVRQCVEVAQALAVGDLTK------QLTIRQRDEIGQMAEAM 254
Query: 138 RAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGD-----FESILNSMRKTISNLREL 192
RA++ + +++K+S GD+ ++ ++ D SI+ + R ++++
Sbjct: 255 RAVAA----AEHDVAGKLDKLSRGDLGIEVMPRSEQDTLMRAIGSIVLAERDVAEKMKQV 310
Query: 193 MKTVRDLALTLESRANDLTRISSEISEAINQVAEAI----QQVSVEAQRQQENITEIMEG 248
+ + + S ++L R +E+ E + Q+ + + Q V+ + + + +G
Sbjct: 311 AEGDLRIKVAPRSEQDELVRAIAEMIERVTQIVDEVRTGAQNVASGDEEMSASSETLSQG 370
Query: 249 MNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEV 308
+ A ++ +MEE S +N+ AR+ KA QDA K +AV
Sbjct: 371 ASEQAASVEQCSSSMEEMSSSINQNAENARQTGSIASKAA------QDA-KESGEAVHNT 423
Query: 309 AEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAA 368
K + I+ I +IA QT+LLALNAA+EAARAGE GRGFAVVA EVR LAE S+ AA
Sbjct: 424 VAAMKEIAGKISIIEEIARQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQTAA 483
Query: 369 EKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIK 428
+I + + E+A EK V + + D ++E I + S +
Sbjct: 484 AEINKLSSTSTAVAERAGTLLEKLVPDIQKTADLVQE-------IAATSQEQNSGAGQVN 536
Query: 429 NELANTQEHVENAKKALENLAASAQETTASAEEVSAS 465
L + V+ A E LA++A+E +A AE++ A+
Sbjct: 537 LALQQLDQVVQQNASASEELASTAEELSAQAEQLQAA 573
>pir||T44253 transducer protein htrVIII [validated] - Halobacterium salinarum
>gi|3015619|gb|AAC38313.1| (AF031641) methyl-accepting
aerotaxis transducer protein [Halobacterium salinarum]
Length = 642
Score = 146 bits (366), Expect = 4e-34
Identities = 93/338 (27%), Positives = 167/338 (48%), Gaps = 8/338 (2%)
Query: 162 DVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAI 221
DV +D F +L+ TI RE+ D+A E + EI +A
Sbjct: 301 DVENDAMAAIAASFNEMLDETETTI---REIQAVASDVAAASEDADAGVV----EIEDAS 353
Query: 222 NQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGK 281
QV+E +Q+++ A Q+E + E + G V A +E ++A +G+
Sbjct: 354 GQVSETVQEIAAGADEQREKL-ETVSGEMTDLSAAIEEVAASAHSVADSHETAAVAGDGE 412
Query: 282 DKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAA 341
E+AI+ +Q A++ Q V+ + + + +I++ I+D+AEQTN+LALNA IEAA
Sbjct: 413 QTAEQAIADSRTVQSAVESTVQNVEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAA 472
Query: 342 RAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVD 401
RA + G GFAVVA EV++LAEE++ +A I ++ +I +++ V E + V D++
Sbjct: 473 RADKSGDGFAVVADEVKDLAEETRASAGDIEALVADIDAQMQATVTEARTADESVQDAIS 532
Query: 402 FLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEE 461
+ V + E ++ ++ +Q+I + E A + ++ + T A A++
Sbjct: 533 AVDAVVDAFGTVAENAEETDTGVQEISTTTDDQAASTEEAVSMIAEVSDISTATAADAQQ 592
Query: 462 VSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
S +A++Q ++ + N LR+ +L+ V V
Sbjct: 593 ASTAAEQQTTAAATISENTAALREQADRLQGLVSTFDV 630
>gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium sp. NRC-1]
Length = 627
Score = 146 bits (365), Expect = 5e-34
Identities = 103/335 (30%), Positives = 179/335 (52%), Gaps = 30/335 (8%)
Query: 162 DVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAI 221
DV+DD + A DF +L ++ TIS+++ V ++ T + R + + S+ +SE++
Sbjct: 223 DVTDDHRA-AVEDFNQLLETLADTISDIQSFSDAVLAVSRTTDERVDAVADRSAAVSESV 281
Query: 222 NQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGK 281
++A+ Q + Q NI M+ ++ T +EE + N+V A+
Sbjct: 282 TEIADGANQQT----NQLNNIAAEMDTVSAT----------VEEIAASANDVAKTAQAAA 327
Query: 282 DKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN-------VGDIINAIADIAEQTNLLAL 334
D+GE +VE+ +A++ +R+ Q VAE ++ + I I DIAE+TN+LAL
Sbjct: 328 DRGEDGRGEVEETIEALRALREQSQAVAETVESLAAEVERIDGITALIEDIAEETNMLAL 387
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVK 394
NA+IEAAR G G GFAVVA EV++LAEE++E A I I++ + EK E A +
Sbjct: 388 NASIEAARTGSDGDGFAVVADEVKDLAEETREQAADISEIVDAVTEKAEDA----SIAIG 443
Query: 395 VVDDSVD-FLKETVGYLMNIGELLDDVES---KLQDIKNELANTQEHVENAKKALENLAA 450
VD V+ + + G L + ++D+V + +Q+I + + V + +E +A+
Sbjct: 444 EVDAEVERKITKAEGVLRDFEAIVDEVANVNHAVQEISDATDQGAQSVTDVVGMVEEVAS 503
Query: 451 SAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
++ET A ++ V+ +A EQ + +EV + EL +
Sbjct: 504 VSEETAAESDTVADNAAEQTDATDEVADQMDELAE 538
>pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 - Synechocystis
sp. (strain PCC 6803) >gi|1652276|dbj|BAA17199.1|
(D90904) methyl-accepting chemotaxis protein (MCP)
[Synechocystis sp.]
Length = 953
Score = 145 bits (363), Expect = 8e-34
Identities = 109/467 (23%), Positives = 225/467 (47%), Gaps = 48/467 (10%)
Query: 39 KTMKVVQTGGSVEAIRETLENAKSQLKE-TLWLSIGVMSIVAVISGALGMRLMNSTMRPI 97
K +K +Q +R T E + L E TL L IGV ++ +++ + L + +P+
Sbjct: 498 KVIKDIQGQPLALLVRGTSEVEFNDLLERTLLLQIGVGAVALLVAAIIAYWLGKTLTKPL 557
Query: 98 NEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERM-- 155
+ A+ + EG+ E+ SK DE+G+L F A+++ V + + E
Sbjct: 558 KNLQTTAQKLGEGETGVRAEVESK------DEVGQLAVTFNAMAEQVEASTRSLQETSLE 611
Query: 156 ------------EKISEGDVS--DDLKVHAKGDFE-----------SILNSMRKTISNLR 190
E++ +G V D++ ++GD +I ++ T++ LR
Sbjct: 612 RQQEAEKQRQLKEELQDGVVRLLTDIEESSRGDLTVRSSVEAGAVGAIADAFNATLAGLR 671
Query: 191 ELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMN 250
+L+K V D A + +A + ++ + +S+ + A A++ + ++I +
Sbjct: 672 KLVKQVVDTATEVSGQAQEDSQEITSLSDNALEQARALEFATASVAEMAQSIESVAISAQ 731
Query: 251 ITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAE 310
A + ++ +A A++G++ ++ + + ++ + I + + +AE
Sbjct: 732 TAAAIAKQGNEA--------------AQQGQNTMDETVESIYKVRGRVAEISKKSKRLAE 777
Query: 311 MSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEK 370
S + I+ I+ I+E+TNLLA NA+IEAARAGE G+GF +VA EVR LAE +A++
Sbjct: 778 SSLEISKIVGIISGISEKTNLLAFNASIEAARAGENGQGFRIVADEVRRLAEMVTLSAQE 837
Query: 371 IRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNE 430
I ++ IQE+ + + E+ V +++T L N+ ++ +++++ L I
Sbjct: 838 IEQVILSIQEETSQMSQLMEESTNEVVTGTQLVQKTKETLQNLAQISEEIDTVLDSISRN 897
Query: 431 LANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVK 477
+ + + + ++N+A+ A+ T+ ++ VS S Q A + +++
Sbjct: 898 TESQRLASQMVTETVQNVASVAKATSDKSQLVSQSLQSLAKTAVDLQ 944
>pir||T44597 transducer protein htpVI [similarity] - Halobacterium salinarum
>gi|1654425|gb|AAB17883.1| (U75438) transducer HtD
protein [Halobacterium salinarum]
Length = 777
Score = 145 bits (361), Expect = 1e-33
Identities = 97/338 (28%), Positives = 175/338 (51%), Gaps = 17/338 (5%)
Query: 166 DLKVHAKGDFE-SILNSMRKTISNLRELMKTVRDLALTLESR---ANDLTRISSEISEAI 221
DL V D E + + MR+ + + D+ T+ R A+++ S++ S++
Sbjct: 431 DLTVRLDADVEQAAMADMRRAFNEM------AADMEATIAERGAFADEVATASTDASDSA 484
Query: 222 NQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAR--- 278
V + + VS R ++ + + + A T +EE + V +V ++
Sbjct: 485 AAVEQTGRDVSTAVGRIRDRAADQRDQLEAVASETDEMSATIEEVARVAGQVAETSQRAA 544
Query: 279 ----EGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLAL 334
+G+ + A++Q+E+I+D + AV ++ + I+ AI DIAEQTN+LAL
Sbjct: 545 ALGDDGQAAAQDAVAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAITDIAEQTNMLAL 604
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVK 394
NA IEAARA + G GFAVVA EV++LA+ESK A +++ ++ E++ + E +V ++ +
Sbjct: 605 NANIEAARADQDGDGFAVVADEVKDLADESKALAAEMQALVAEVRAQTETSVAAMDRIQE 664
Query: 395 VVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQE 454
V D V+ + ET L +I + + ++ +Q+I N + + V + A+ ++AA +E
Sbjct: 665 RVSDGVETVSETERSLSDIAGRIAEPDTGVQEISNAMDDQAASVSDVTTAVGDVAALGEE 724
Query: 455 TTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
T AE +A EQA+++ +V L + LRE
Sbjct: 725 TATEAESTRDAAAEQATTLSDVAAQTETLAEHAVALRE 762
>gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium sp. NRC-1]
Length = 764
Score = 145 bits (361), Expect = 1e-33
Identities = 116/464 (25%), Positives = 210/464 (45%), Gaps = 56/464 (12%)
Query: 72 IGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIG 131
+G++ I V +G+ + ++T+ + + ++ A+ +A G L + I +DE G
Sbjct: 284 VGLVLITIVSLSLIGVTVGSTTVTALRQFSRRADEMAAGDLD------TDIDTSRNDEFG 337
Query: 132 KLIEGFRAISQDVLQTL---EIITERMEKISE--------GDVSDDLKVHAKGDFESILN 180
L E FR++ + ++L E T R E E + + + A+ D +
Sbjct: 338 TLAESFRSMRDSLSESLTDAERATARAEDAREDAEQQRADAEAAREDAEAARKDAQETAR 397
Query: 181 SMRKTISNLRELMKTVRDLALTLE---SRAND-LTRISSEISEAI--------------N 222
++ ++ E + V D LT SR +D + RI +++ + +
Sbjct: 398 ALESAAADYEEALTAVADGDLTRRVDASRDHDAMARIGHALNDMLDDIETSVAAATAFSD 457
Query: 223 QVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIARE--- 279
V++A Q+V +A + T++ ++ +D D + E +G V+++ + A E
Sbjct: 458 HVSDAAQRVEADAGDAIDAGTDVSTAVDEISDGATEQTDRLHEVAGEVDDLSASAEEVAE 517
Query: 280 ------------------GKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINA 321
G+ E A+ ++D+ D + A+ + ++G+I++
Sbjct: 518 TVASLADTAGQAASAVDDGRQATEDAVETMDDVADDAEAAADAMDALDSEMADIGEIVDV 577
Query: 322 IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEK 381
IADIA+QTN+LALNA+IEAAR G G GFAVVA EV+ LAEES++AAE I L +Q +
Sbjct: 578 IADIADQTNMLALNASIEAARTGADGDGFAVVADEVKTLAEESRDAAEDIESRLLALQGQ 637
Query: 382 VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENA 441
V +E V D + + L ++ + D ++ +I+
Sbjct: 638 VSDVADEMRATSDTVSDGRATVGDAATALDDVVSFVADTDTAAGEIRAATDRQAHAASRV 697
Query: 442 KKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
A++ +A +QET A A V+ SA Q ++ V +L D
Sbjct: 698 ASAVDEVAGISQETAAQATAVADSAATQTDTLSSVDDAAADLAD 741
>sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|11385312|pir||T44946
transducer protein htrII [validated] - Halobacterium
salinarum >gi|1527137|gb|AAC44369.1| (U62676) phototaxis
transducer II [Halobacterium salinarum]
Length = 765
Score = 144 bits (360), Expect = 2e-33
Identities = 124/471 (26%), Positives = 216/471 (45%), Gaps = 70/471 (14%)
Query: 72 IGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIG 131
+G++ I V +G+ + ++T+ + + ++ A+ +A G L + I +DE G
Sbjct: 285 VGLVLITIVSLSLIGVTVGSTTVTALRQFSRRADEMAAGDLD------TDIDTSRNDEFG 338
Query: 132 KLIEGFRAISQDVLQTL---EIITERMEKISE--------GDVSDDLKVHAKGDFESILN 180
L E FR++ + ++L E T R E E + + + A+ D +
Sbjct: 339 TLAESFRSMRDSLSESLTDAERATARAEDAREDAEQQRADAEAAREDAEAARKDAQETAR 398
Query: 181 SMRKTISNLRELMKTVRDLALTLE---SRAND-LTRISSEISEAI--------------N 222
++ ++ E + V D LT SR +D + RI +++ + +
Sbjct: 399 ALESAAADYEEALTAVADGDLTRRVDASRDHDAMARIGHALNDMLDDIETSVAAATAFSD 458
Query: 223 QVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIARE--- 279
V++A Q+V +A + T++ ++ +D D + E +G V+++ + A E
Sbjct: 459 HVSDAAQRVEADAGDAIDAGTDVSTAVDEISDGATEQTDRLHEVAGEVDDLSASAEEVAE 518
Query: 280 ------------------GKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINA 321
G+ E A+ ++D+ D + A+ + ++G+I++
Sbjct: 519 TVASLADTAGQAASAVDDGRQATEDAVETMDDVADDAEAAADAMDALDSEMADIGEIVDV 578
Query: 322 IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEK 381
IADIA+QTN+LALNA+IEAAR G G GFAVVA EV+ LAEES++AAE I L +Q +
Sbjct: 579 IADIADQTNMLALNASIEAARTGADGDGFAVVADEVKTLAEESRDAAEDIESRLLALQGQ 638
Query: 382 VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIK------NELANTQ 435
V +E ++ D+V + TVG + LDDV S + D + Q
Sbjct: 639 VSDVADE----MRATSDTVSDGRATVG---DAATALDDVVSFVADTDTAAGQIRAATDRQ 691
Query: 436 EH-VENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
H A++ +A +QET A A V+ SA Q ++ V +L D
Sbjct: 692 AHAASRVASAVDEVAGISQETAAQATAVADSAATQTDTLSSVDDAAADLAD 742
>pir||B71160 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256884|dbj|BAA29567.1| (AP000002) 277aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 277
Score = 143 bits (358), Expect = 3e-33
Identities = 79/275 (28%), Positives = 157/275 (56%), Gaps = 4/275 (1%)
Query: 221 INQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREG 280
+N+V E + +++ E + E + + ++ ++A + + V A ++ S E S+A +G
Sbjct: 6 LNEVNELVSRLNNENVKIAE-VNDYIQ--TLSAGIEEMNVQA-QQLSDFAVESSSMAEKG 61
Query: 281 KDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEA 340
K+ + +V I + + + A+ +AE SK + +I+ I+ IA QTNLLALNA+IEA
Sbjct: 62 KEISDNVALKVSKISETSREMSNAISILAEYSKKIDEIVYVISSIASQTNLLALNASIEA 121
Query: 341 ARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSV 400
ARAGE GRGFAVVA+ VR LA+ SK+AAE+IR ++ E+QE + +E ++ VKV ++
Sbjct: 122 ARAGEAGRGFAVVAENVRELADRSKKAAEQIRDLIKEMQENTNRVIEAIQENVKVTEEVK 181
Query: 401 DFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAE 460
+ ++E + +I ++ + ++++ + V+ + +++++ + A
Sbjct: 182 EAIQELIAAFDDIARRANETATMVKELSEGIDEQANSVQMLVERIDSISKDVSDNLNFAT 241
Query: 461 EVSASAQEQASSMEEVKRNIIELRDIVKKLREAVE 495
+++ + + +E +K + +L+D + K E +E
Sbjct: 242 QLTETVKGSIEKLEVIKNKVSQLKDELDKTLEKLE 276
>gb|AAG34155.1|AF312877_1 (AF312877) methyl-accepting chemotaxis protein McpV [Sinorhizobium
meliloti]
Length = 604
Score = 142 bits (354), Expect = 9e-33
Identities = 108/436 (24%), Positives = 204/436 (46%), Gaps = 38/436 (8%)
Query: 58 ENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRARE 117
++ + +E W G++ A+ + ++ S +RPI ++ +IA+ LS
Sbjct: 177 DDLAAMFRERAWQMAGILVAAALAILMAALAIVRSVVRPIEKLKVSMRAIADEDLSSDVP 236
Query: 118 MVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFES 177
+ DEIG++ + + V + LE+ + E + D L +G E
Sbjct: 237 ETDRA-----DEIGQMAKVLVVLRDSVRERLEL------RSREAEQQDRLDAERRGHEER 285
Query: 178 ILNSMRKTISNLRELMKTVR---------DLALTLESRANDLTRISSEISEAINQVAEAI 228
R T + E M+T+ DL + A + ++ + + A+ + + I
Sbjct: 286 ----QRTTAATQAEAMETLGAALERLANGDLTAAVARIAPEYAKLKDDFNTAVAALRDVI 341
Query: 229 QQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAI 288
+S + + +I E N + T++ A+EE + ++E+ S R + +A
Sbjct: 342 GAISRSTEIVHGSAADISEAANNLSRRTEQQAAALEETAAALDEITSTVRHASGRALEAR 401
Query: 289 SQVEDIQDAMK----VIRQAVQEVAEM---SKNVGDIINAIADIAEQTNLLALNAAIEAA 341
V++ + + ++R A+ + + S + II I +IA QTNLLALNA +EAA
Sbjct: 402 DMVDETKASAAKSGDIVRNAIDAMGRIEASSSRISQIIGVIDEIAFQTNLLALNAGVEAA 461
Query: 342 RAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVD 401
RAGE GRGFAVVAQEVR LA+ S AA++I+ ++ +V+E GV++V + D
Sbjct: 462 RAGEAGRGFAVVAQEVRELAQRSAGAAKEIKALIG-------TSVKEVGAGVELVRSTGD 514
Query: 402 FLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEE 461
L E + + E + + + ++ L V + + + AA +ETTA+++
Sbjct: 515 ALMEIDALVNRVNEQVAAIATAAREQATGLQEVNTAVNSMDQMTQQNAAMVEETTAASQT 574
Query: 462 VSASAQEQASSMEEVK 477
++ ++E + +E+ +
Sbjct: 575 LAQESRELKALLEQFR 590
>pir||C83012 probable chemotaxis transducer PA5072 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951365|gb|AAG08457.1|AE004920_7 (AE004920) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 647
Score = 142 bits (354), Expect = 9e-33
Identities = 93/357 (26%), Positives = 174/357 (48%), Gaps = 25/357 (7%)
Query: 139 AISQDVLQTLEIITERMEKISEGDVS----DDLKVHAKGDFESILNSMRKTISNLRELMK 194
AI++ +++ L+ + E I+ GD+ + L + + + + M++ +LREL+
Sbjct: 311 AINRQIVRPLDEALAQAEAIAAGDLGKRPQNPLTLQRRDELGQLQRVMQRMGDSLRELVG 370
Query: 195 TVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
+ D L S A +L+ ++ + +N QV+ + ++ + +
Sbjct: 371 RISDGVSQLASSAEELSAVTEQTRAGVNSQKVETDQVATAMHEMAATVQDVARNAELASQ 430
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
++ A EE AR+G ++A++++E + M V +A+ + S+
Sbjct: 431 AARQ---ADEE-----------ARQGDAVVDQAVTRIERLASEMDVSSEAMARLKNESEQ 476
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G +++ I +AEQTNLLALNAAIEAARAG+ GRGFAVVA EVR LA+ ++++ +I G+
Sbjct: 477 IGSVLDVIKSVAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRGLAQRTQQSTAEIEGL 536
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANT 434
+ +Q+ +A E E + +V+ + G LD + + DI+N
Sbjct: 537 IQRLQQGAGEAAERLENSRSLTASTVELARRA-------GAALDSITRTVSDIQNMNLQI 589
Query: 435 QEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
E E + S AE+ +A++++ A+S E+ R +L+ V + R
Sbjct: 590 ATAAEQQSTVAEEINRSVLSVRDVAEQSAAASEQTAASSGELARLGTQLQAQVGRFR 646
>sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|421715|pir||A47190 transducer
protein htrI [validated] - Halobacterium salinarum
>gi|305352|gb|AAA72315.1| (L05603) sensory rhodopsin I
transducer [Halobacterium halobium]
>gi|10581131|gb|AAG19913.1| (AE005075) Htr1 transducer;
Htr1 [Halobacterium sp. NRC-1]
Length = 536
Score = 140 bits (349), Expect = 4e-32
Identities = 100/404 (24%), Positives = 208/404 (50%), Gaps = 28/404 (6%)
Query: 97 INEM----AKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIIT 152
+NEM A + E+ AE + +R +K + + + R ++ T +
Sbjct: 106 LNEMERTRADLEETQAEAETAREEAEQAKQEAQAAEREA------RELAATYQDTAKRYG 159
Query: 153 ERMEKISEGDVSDDLKVHAKGD-FESILNSMRKTISNLRELMKTVRDLALTLESRANDLT 211
E ME + GD++ + V + E++ + + + +L+ ++TV +A +E++ ++
Sbjct: 160 ETMEAAATGDLTQRVDVDTDHEAMETVGTAFNQMMDDLQATVRTVTTVADEIEAKTERMS 219
Query: 212 RISSEISEAINQVAEAIQQVSVEAQRQQ---ENITEIMEGMNITADVTQRTVDAMEEFSG 268
S++I + EA+ ++ +A Q+ ++ + ++ ++ +A+ T+D + S
Sbjct: 220 ETSADIEASAGDTVEAVSKIESQANDQRTELDSAADDVQQVSASAEEIAATIDDLASRSE 279
Query: 269 VVNEVLSIAREGKDKGEKAISQVE-DIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAE 327
V AR+ +S +E ++ DA+ + Q +VAE++ DI++ I DI E
Sbjct: 280 DVATASDAARDSSKSALDEMSSIETEVDDAVGQVEQLRDQVAEIT----DIVDVITDIGE 335
Query: 328 QTNLLALNAAIEAARAGEL--GRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKA 385
QTN+LALNA+IEAARAG G GF+VVA EV++LAEE+++ A +I ++ ++ + E
Sbjct: 336 QTNMLALNASIEAARAGGNADGDGFSVVADEVKDLAEETQDRANEIAAVVEKVTAQTEDV 395
Query: 386 VEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKAL 445
++ V+ + ++ T+ + I + + +V + + +I+ + E V++ ++
Sbjct: 396 TASIQQTRTRVESGSETVESTLRDIRTIADSIAEVSNSIDEIQRTTSEQAETVQSTATSV 455
Query: 446 ENLAASAQETTASAEEVSA-------SAQEQASSMEEVKRNIIE 482
E +A + +TTA A + + SA+E A+S+E+ + +E
Sbjct: 456 ERVAGLSDDTTALASDAESAVIGQRESAEEIAASLEQFQNTAVE 499
>gi|10954729 hypothetical chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes] >gi|8918729|dbj|BAA97794.1|
(AB039932) hypothetical chemoreceptor gene~similar to
orf2 gene in pTi15955 [Agrobacterium rhizogenes]
>gi|10567393|dbj|BAB16202.1| (AP002086) hypothetical
chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes]
Length = 723
Score = 140 bits (349), Expect = 4e-32
Identities = 107/416 (25%), Positives = 203/416 (48%), Gaps = 28/416 (6%)
Query: 74 VMSIVAVISGAL-GMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGK 132
V +++A++ G + G L+ + PI + +++A GKL E + ++ R DEIG+
Sbjct: 298 VTTVIALLFGCVAGYLLLRTIKSPIEALTASMKAVASGKLD---EKIGSVETR--DEIGE 352
Query: 133 LIEGFRAISQDVLQTLEIITERMEKIS---EGDVSDDLKVHAKGDFESILNSMRKTISNL 189
+ + L+ + + E + S + DDL+ D +I N++ S L
Sbjct: 353 MARALDVFRNNALEKIRVENEAEQSRSLARQQRQEDDLR--KTRDAAAISNAVEAVASGL 410
Query: 190 RELMKTVRDLALTLESRAN-DLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEG 248
+L DL +T+ + +L ++ + + ++ + ++Q+ + Q N ++ E
Sbjct: 411 HKLASG--DLTVTIGRPLDGELDQLRQDFNASMLHLQATMRQIRDNVEMIQGNGNQMAEA 468
Query: 249 MNITADVTQRTVDAMEEFSGVVNEVL----SIAREGKDKGEKAISQVEDIQDAMKVIRQA 304
A T++ ++EE + V+E+ S A KD + + D+ V+ A
Sbjct: 469 AEDLAKRTEQQAASLEETAAAVDEITVTVRSSAERAKDADQIVRQAKQSADDSAIVVNNA 528
Query: 305 VQ---EVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLA 361
+ + E S+ + I I +IA QTNLLALNA +EAARAGE G+GFAVVAQEVR LA
Sbjct: 529 IDAMGRIEEASRQIEQITGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELA 588
Query: 362 EESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVE 421
+ S +AA++I+ ++N K+ E G +V ++ L + ++ I + ++ +
Sbjct: 589 QRSAKAAKEIKVLIN-------KSTAEVNTGSHLVQETGAVLAKISTQIVTISQHVETIA 641
Query: 422 SKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVK 477
D + L V + ++ AA +ETTA++ E+++ A + +++ +
Sbjct: 642 RGSHDQSSALQGVNSTVNQMDQMTQHNAAMVEETTAASRELASQADSLLALVQQFR 697
>pir||F75590 methyl-accepting chemotaxis protein - Deinococcus radiodurans
(strain R1) >gi|6460726|gb|AAF12431.1|AE001863_56
(AE001863) methyl-accepting chemotaxis protein
[Deinococcus radiodurans]
Length = 758
Score = 139 bits (348), Expect = 5e-32
Identities = 107/460 (23%), Positives = 218/460 (47%), Gaps = 50/460 (10%)
Query: 49 SVEAIRETLENAKSQLKET----LWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIA 104
++ AI +++ + QL++ L L +G ++++ + + L+ S +RP+ ++ +
Sbjct: 316 ALRAINDSMSQSFGQLQQQATRRLALLLGGLALLLALVLLVNRALLRSILRPLEQLTSAS 375
Query: 105 ESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVS 164
+ +A G L+ K+ +DE G L F + + + E E++ +
Sbjct: 376 KQLASGNLA------VKLPVTSNDEFGTLATSFNEAATQLRASAE--RTEQERVEAQRLQ 427
Query: 165 DDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQV 224
+++ G F + + + +L + D+ L + + + ++ E++ + QV
Sbjct: 428 NNI-----GQFLDVTMDIAE--GDLTKRGVVTEDI---LGNVVDSINLMTDELAATLQQV 477
Query: 225 AEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKG 284
A VS +++ I +G +TA QR + + + + + ++ A+
Sbjct: 478 QAASASVSGGSKQMLGTTEAIQQGAQLTAAEAQRVAEQVSQITATIRQMAQNAQTSAQTA 537
Query: 285 EKAISQVEDIQDA-------MKVIRQAVQEVAEMSKNVGD-------IINAIADIAEQTN 330
+A+ + Q+A M+ IR+ VQ+V++ K +GD I++ I+ IA +TN
Sbjct: 538 REALLASQQGQEALQETLGGMQNIRREVQQVSKRIKTLGDRSLEIQEIVDTISQIARRTN 597
Query: 331 LLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETE 390
LLALNA++EAA AG+ G F VA E+R LA S +A +I G++ +Q +V+ + E E
Sbjct: 598 LLALNASVEAAGAGDAGGRFGAVADEIRQLATTSAQATTRIAGLIKSVQAEVQDVIVEAE 657
Query: 391 KGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAA 450
+G + V+ L +IGEL E Q ++ A+TQE V+
Sbjct: 658 EGTREVEQGYRIAGSAGQRLQDIGEL---TERSAQLAESIAASTQEQVQ----------- 703
Query: 451 SAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKL 490
S + A+ ++++ AQ S++++ + +L D+ ++L
Sbjct: 704 SVERVNAAVQQIAEVAQRSESAVQQGRSTAQQLEDLARQL 743
>gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium sp. NRC-1]
Length = 489
Score = 139 bits (348), Expect = 5e-32
Identities = 88/324 (27%), Positives = 167/324 (51%), Gaps = 35/324 (10%)
Query: 160 EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISE 219
E D +L D E+ L+S+ T ++ E T+R R D++R S +S
Sbjct: 200 EIDSRQELANAVASDVEAPLSSLEATSQDVAERTDTMRAATDDQVDRMADVSREISSVSA 259
Query: 220 AINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIARE 279
++ +VA TAD +RT + E ++A++
Sbjct: 260 SVEEVAS-------------------------TADDVRRTSEDAE----------ALAQQ 284
Query: 280 GKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIE 339
G+ + A++ + DI +A + V+++ E + +V + I DIAEQTN+LALNA+IE
Sbjct: 285 GEAAADDALATMTDIDEATDGVTAGVEQLRERAADVESVTGVIDDIAEQTNMLALNASIE 344
Query: 340 AARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDS 399
AARAGE G GFAVVA EV+ LAEES+E + ++ ++ ++Q + E+ V++ ++ + + +
Sbjct: 345 AARAGEAGEGFAVVADEVKALAEESREQSTRVEELVEQMQAETEETVDQLDEVNQRIGEG 404
Query: 400 VDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASA 459
V+ ++E + L I + ++D S +Q++ E + ++++ A E A+
Sbjct: 405 VERVEEAMETLQEITDAVEDAASGMQEVSTATDEQAVSTEEVAEMVDDVDDRAGEIAAAL 464
Query: 460 EEVSASAQEQASSMEEVKRNIIEL 483
++++ + +Q ++EEV+ + +L
Sbjct: 465 DDIADATDQQVRTVEEVRETVGKL 488
>gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium sp. NRC-1]
Length = 636
Score = 139 bits (348), Expect = 5e-32
Identities = 108/484 (22%), Positives = 222/484 (45%), Gaps = 43/484 (8%)
Query: 27 NIAISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALG 86
N+ L D++ + ++ GSV A ET+E K + A+G
Sbjct: 164 NVDDDALLDSIGMPVFMLDATGSVVAWNETIEELTGCSK----------------ADAMG 207
Query: 87 MRLMNSTMRPINEMAK-IAESIAEGKLSRAREM-----VSKIQYREDDEIGKLIEG---- 136
M + P + K +A+ + E S A E K Q D + G
Sbjct: 208 MDHASEAFYPDDRRVKTLADKVIESPRSAAAEFDIERSEEKAQLYADTSVMTDQGGTDRH 267
Query: 137 --FRAI-----SQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILN---SMRKTI 186
F+A ++L E I +R E + D ++L +++ + S R +
Sbjct: 268 IRFKASPIFDDDGELLAVAETIEDRTEDVRRADAVEELVDELSTTIDALSSGQLSKRASF 327
Query: 187 SNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIM 246
+ + + + + L A+ R+ ++ ++A+ I++ + +A + ++
Sbjct: 328 EHEGIINEQLVSVVSALNGMADQFERLVGQVDGQTQELADTIERATADATDIADTVSSQN 387
Query: 247 EGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVE-------DIQDAMK 299
E ++ A+ + +M+E + ++V S A + +D E + E ++ D
Sbjct: 388 EMLSSAANEMENFSASMQEVAASSDQVASAAEQAQDAAESGLEASEGANQATNEVIDISD 447
Query: 300 VIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRN 359
+ ++V ++ + D++ IA++A+QTNLLALNA IEAARAGE G GFAVVA EV+
Sbjct: 448 DLMESVSKLESRMDEIEDVVEVIAEVADQTNLLALNANIEAARAGEAGSGFAVVADEVKE 507
Query: 360 LAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDD 419
LA E++E E+I G ++++Q++ + V E+ + + + D + + + L I +D+
Sbjct: 508 LANETREHTERIAGSISDVQQQANETVLAVEESHEQIHRAGDEIDDALTALEEIATSVDE 567
Query: 420 VESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRN 479
+ + ++ VE+ +E++ A+E A+++ + ++ QEQ++++ ++
Sbjct: 568 AATGITEVARANDEQASTVEDVIVTIEDVQQQAEEAAAASDRIVSATQEQSTAVSQLSER 627
Query: 480 IIEL 483
+ +L
Sbjct: 628 VDKL 631
>pir||T44849 transducer protein car [validated] - Halobacterium salinarum
(strain S9) >gi|4469246|emb|CAB38318.1| (AJ132321) Car
protein [Halobacterium salinarum]
Length = 452
Score = 139 bits (347), Expect = 6e-32
Identities = 83/307 (27%), Positives = 163/307 (53%), Gaps = 7/307 (2%)
Query: 186 ISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEI 245
+ ++ E +K R+L E+ ++++ SE+SE+I++V ++ A + E + +
Sbjct: 153 VPDISEKVKNQRELHDLHETVSSNVGEHLSELSESIDEVGSFAEETEAFAGEEIERMEGV 212
Query: 246 MEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAV 305
+ ++ + + + EE S A EG+ E AI ++ +Q++ + + +
Sbjct: 213 ADEVSNQSATIEEIASSAEEVSQASQRAQDRATEGEQTAETAIDRMGAVQESAERVNDTI 272
Query: 306 QEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESK 365
+ + + +II+AI DIA+QTN+LALNA+IEAARAGE G GFAVVA EV++LAEES+
Sbjct: 273 DGLTSQADEMSEIIDAINDIADQTNMLALNASIEAARAGEKGEGFAVVADEVKSLAEESQ 332
Query: 366 EAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQ 425
E A++I ++ E+ E ++ + + +++++ ++ET+ L I + +D+ + ++
Sbjct: 333 ERADEIEQMIVEMVETTDQTADRIGQTTTEIEEAITAVRETLDSLQEIRKAVDETATGVK 392
Query: 426 DIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
++ T +H + E +AA+ E E+ + E + E+ D
Sbjct: 393 EVAGA---TDDHAAST----EQVAATTDEAVDKLTELEDRLDNLSQIASEQHDRVAEIED 445
Query: 486 IVKKLRE 492
+V +L E
Sbjct: 446 MVDELVE 452
>dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 401
Score = 139 bits (347), Expect = 6e-32
Identities = 97/348 (27%), Positives = 179/348 (50%), Gaps = 28/348 (8%)
Query: 151 ITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDL 210
IT M++I G + + K+ K ++ N + + +S +RE + + + +L
Sbjct: 38 ITNGMKEIVAGKLVN--KMDEKSSNHAVFNQLIEFVSRVREKFLL---FSKNVHEKGENL 92
Query: 211 TRISSEISEAINQVAEAIQQVSVEAQRQ----QENITEIMEGMNITADVTQRTVDAMEEF 266
I +E + V AI +V +Q +EN + E D++QR+ E
Sbjct: 93 AEIGEYATEKADIVRAAIDEVGRGLNKQLVATEENAMSMEEMTQAIEDLSQRS----NEI 148
Query: 267 SGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIA 326
S + N L + +EG +K + ++ +++ + + A+ ++ E S +G I+ I I+
Sbjct: 149 SELSNTTLDLTQEGSEKLKDSLEKMKQLNQTINTTYDAINKLGEKSHEIGMIVKVITGIS 208
Query: 327 EQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAV 386
EQ NLLALNA+IEAARAGE G+GFAVVA EVR LAE+S++++ ++ I+ IQE+ V
Sbjct: 209 EQINLLALNASIEAARAGEHGKGFAVVADEVRKLAEQSRQSSSEVSNIVKNIQEETGIVV 268
Query: 387 EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALE 446
+KG + +D T ++ +G + + + + + I E+ N+ + E
Sbjct: 269 GSMQKGTEEFED-------TNTTIVEVGAMFEKILTATRTI-------AENNGNSSASTE 314
Query: 447 NLAASAQETTASAEEVSASAQEQASSMEEVKR-NIIELRDIVKKLREA 493
L+A++Q+ + EE+++ ++E EE+ + EL + K ++EA
Sbjct: 315 ELSAASQQIMTTIEEIASISRESVEMFEELTEISDDELSTLEKLVQEA 362
>pir||T44978 transducer protein hemAT [validated] - Halobacterium salinarum
>gi|1654421|gb|AAB17881.1| (U75436) transducer HtB
protein [Halobacterium salinarum]
Length = 489
Score = 138 bits (345), Expect = 1e-31
Identities = 80/307 (26%), Positives = 165/307 (53%), Gaps = 28/307 (9%)
Query: 177 SILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQ 236
++ + +S+L + V + T+ +R +D +++S I+ V+ ++++V+
Sbjct: 210 AVATHVEAPLSSLEATSQDVAERTDTMRARTDDQVDRMADVSREISSVSASVEEVAS--- 266
Query: 237 RQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQD 296
TAD +RT + E ++A++G+ + A++ + DI +
Sbjct: 267 ---------------TADDVRRTSEDAE----------ALAQQGEAAADDALATMTDIDE 301
Query: 297 AMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQE 356
A + V+++ E + +V + I DIAEQTN+LALNA+IEAARAGE G GFAVVA E
Sbjct: 302 ATDGVTAGVEQLGERAADVESVTGVIDDIAEQTNMLALNASIEAARAGEAGEGFAVVADE 361
Query: 357 VRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGEL 416
V+ LAEES+E + ++ ++ ++Q + E+ V++ ++ + + + V+ ++E + L I +
Sbjct: 362 VKALAEESREQSTRVEELVEQMQAETEETVDQLDEVNQRIGEGVERVEEAMETLQEITDA 421
Query: 417 LDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEV 476
++D S +Q++ E + ++ + A E A+ ++++ + +Q ++EEV
Sbjct: 422 VEDAASGMQEVSTATDEQAVSTEEVAEMVDGVDDRAGEIAAALDDIADATDQQVRTVEEV 481
Query: 477 KRNIIEL 483
+ + +L
Sbjct: 482 RETVGKL 488
>gb|AAC46419.1| (U81828) methylation accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 624
Score = 138 bits (345), Expect = 1e-31
Identities = 113/427 (26%), Positives = 208/427 (48%), Gaps = 40/427 (9%)
Query: 56 TLENAKSQLKETLWLSIGVMSIV---AVISGALGMRLMNSTMRPINEMAKIAESIAEGKL 112
++E +++++ + +S+ S++ AVI+ L MR + RPI +++ ++ +G L
Sbjct: 163 SVEKIAAEVRQKVLISLLTQSVITALAVIAFLLAMRSLVG--RPIRVISERISALQKGDL 220
Query: 113 SRAREMVSKIQYRED-DEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHA 171
+ S + Y+E+ DEIG L + + +E R + +E S D +
Sbjct: 221 A------SPVTYKENGDEIGFLARALEVFRHEAIAKVE----REQAAAEQSASLDAERAR 270
Query: 172 KGDF-ESILNSMRKTISNLRELMKTVR--DLALTLESRANDLTRISSEISEAINQVAEAI 228
F E N+ R ++ L ++ + D ++ L + ++ + + + VA A+
Sbjct: 271 NALFTEEASNTQRLVMTALANSLEKLAAGDFSIHLADLGPEFDKLRQDFNNMVEAVAAAL 330
Query: 229 QQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAI 288
++ + + +E+ + A T++ A+E+ + ++EV + R + E A
Sbjct: 331 TEIKTASVAVEGGSSELASSADQLARRTEQQAAALEQTAAALDEVTTTVRTSSQRAENAG 390
Query: 289 SQVEDIQDAMKV----IRQAV---QEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAA 341
VE+ + + V +R A+ + S +G II I +IA QTNLLALNA +EAA
Sbjct: 391 KLVEETKRSAHVSATVVRDAIGAMDRIQTSSSQIGRIIGVIDEIAFQTNLLALNAGVEAA 450
Query: 342 RAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVD 401
RAGE G+GFAVVAQEVR LA+ S AA++I+ ++N + +E GV +V+++ D
Sbjct: 451 RAGEAGKGFAVVAQEVRELAQRSANAAKEIKNLIN-------VSGQEVAAGVGLVNETGD 503
Query: 402 FLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEE 461
L + I + D + S +Q + + QE A+ + + Q+ A EE
Sbjct: 504 ALLKIE---EQINRISDSIASIVQSYREQATGLQE----INGAINQMDQATQQNAAMVEE 556
Query: 462 VSASAQE 468
+A+ QE
Sbjct: 557 TNAACQE 563
>pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655802|gb|AAF94471.1| (AE004211) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 543
Score = 138 bits (345), Expect = 1e-31
Identities = 87/346 (25%), Positives = 182/346 (52%), Gaps = 23/346 (6%)
Query: 148 LEIITERMEKISEGDVSDDLKVHAKGDFE--SILNSMRKTISNLRELMKTVRDLALTLES 205
L I+ ++ I++GD+S + + G+ E ++ N+ + NLR+L+ + L S
Sbjct: 217 LAIVMKQSNAIAKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSS 276
Query: 206 RANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEE 265
++T+IS++ ++ + + I QV+ + + + ADV + T D+ +
Sbjct: 277 AVEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAV----------ADVARNTEDSASQ 326
Query: 266 FSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADI 325
++ ++EG + + ++ + D + Q V E+ + S + +++ I I
Sbjct: 327 AMAANHK----SQEGARENASMVRSIQQVADIIGEAGQTVSELEQQSSQINVVVDVIRSI 382
Query: 326 AEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKA 385
A+QTNLLALNAAIEAARAGE GRGFAVVA EVR LA ++++ +I I+ ++Q ++A
Sbjct: 383 ADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQA 442
Query: 386 VEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKAL 445
+ TE+ +D V+ + +++I E + + + D+ ++A+ ++
Sbjct: 443 KDATERSRSSIDKCVEQGNHSQSLMISIEESI----ANIADVGTQIASACSEQDS---VA 495
Query: 446 ENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
+ L+ + + +++EV+ +Q+ A + E+ + + L+D +++ +
Sbjct: 496 DELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFK 541
>pir||H82379 methyl-accepting chemotaxis protein VCA1092 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658538|gb|AAF96984.1| (AE004434) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 678
Score = 138 bits (343), Expect = 2e-31
Identities = 98/343 (28%), Positives = 175/343 (50%), Gaps = 37/343 (10%)
Query: 132 KLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRE 191
+L +G + +++ L M +++EGD++ + +G+F + +++ +I NLR
Sbjct: 316 ELGDGINNLLNTLVEPLGQCITVMSRVAEGDLNTSMSEEYQGEFGRLASAVNASIVNLRN 375
Query: 192 LMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMN- 250
++ + +T S+ ++ A ++A+ +S + Q N+ E M
Sbjct: 376 MV--------------DKITVSSARVATASTEIADGNNDLSQRVEAQASNLEETAASMEE 421
Query: 251 ITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAE 310
ITA V Q +A + + AR G+ GE AIS + I A
Sbjct: 422 ITATVRQNADNAKDANLLATDAAKKAARGGEVVGE-AISAMGAINTA------------- 467
Query: 311 MSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEK 370
SK + DII+ I +IA QTNLLALNAA+EAARAGE GRGFAVVA EVRNLA+ S AA++
Sbjct: 468 -SKKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKE 526
Query: 371 IRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNE 430
I+G++N+ +V++ +G ++V++S LKE V ++ + +L+ + + +
Sbjct: 527 IKGLIND-------SVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTG 579
Query: 431 LANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSM 473
+ + + + A+ +ET+A+++ + +E + M
Sbjct: 580 IDEINRAIAAMDEMTQQNASLVEETSAASQSLKDEGKELLNLM 622
>gb|AAC46420.1| (AF036168) putative methyl accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 625
Score = 138 bits (343), Expect = 2e-31
Identities = 112/444 (25%), Positives = 206/444 (46%), Gaps = 81/444 (18%)
Query: 60 AKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMV 119
A +Q L +I ++++ ++G L ++ PI +A +++G L
Sbjct: 181 ASAQSAFMLTAAIAALAVLLAVAGILFA--ISGIANPIRSIASAMRRLSDGDLD------ 232
Query: 120 SKIQYR-EDDEIGKLIEGFRAISQDVLQTLEI---------------------------- 150
S I Y DE+G++ Q+ L + +
Sbjct: 233 SDIPYAGRADEVGEMAGAVEIFRQNALNVVRLEKNPLNPAARAMQRAPHPSSAPNARREQ 292
Query: 151 -------ITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
+ E + +++ GD+S L ++E++ ++LR+L T+ + T+
Sbjct: 293 LRFATTTLGEGLRRLASGDISFQLSEQFAAEYEALREDFN---ASLRQLGATIGAVLQTV 349
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMN-ITADVTQRTVDA 262
S I ++A A Q +S ++Q ++ E + IT++VT T
Sbjct: 350 YS-----------IDNGTGEIASAAQDLSKRTEQQAASLEETAAALEEITSNVTMATKRT 398
Query: 263 MEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAI 322
+E ++A+E +++ + V + AM+ I + Q+++ +II AI
Sbjct: 399 --------DEARNVAKEADISAQRSAAVVSQAEGAMRRIEDSSQQIS-------NIIGAI 443
Query: 323 ADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKV 382
+IA QTNLLALNA +EAARAGE G+GFAVVAQEVR LA+ + +AA++I+G +
Sbjct: 444 DEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRAAQAAKEIKGF-------I 496
Query: 383 EKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAK 442
+K+ + E GVK+V ++ LK Y+++I +L+D + + ++ LA V
Sbjct: 497 QKSSADVENGVKLVLETGTSLKSIGEYVVHINQLMDAIATSAREQSTGLAEINTAVNQMD 556
Query: 443 KALENLAASAQETTASAEEVSASA 466
+A + AA +++TA+ +S+ A
Sbjct: 557 QATQQNAAMVEQSTAAVASLSSEA 580
>pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyrococcus abyssi
(strain Orsay) >gi|5458976|emb|CAB50462.1| (AJ248288)
METHYL-ACCEPTING CHEMOTAXIS PROTEIN [Pyrococcus abyssi]
Length = 374
Score = 138 bits (343), Expect = 2e-31
Identities = 83/316 (26%), Positives = 165/316 (51%), Gaps = 32/316 (10%)
Query: 179 LNSMRKTISNLRELMKTVR--DLALTLE--SRANDLTRISSEISEAINQVAEAIQQVSVE 234
+ ++++ I NL E + V+ DL E SR N+ +E+++ I ++ I++++V+
Sbjct: 82 IENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQ 141
Query: 235 AQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDI 294
AQ + S E S+A +G+ + +V I
Sbjct: 142 AQ----------------------------QLSDFALESASMAEKGRQISDNVALKVSRI 173
Query: 295 QDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVA 354
+ + + AV+ +AE SK + DI+ I+ IA QTNLLALNA+IEAARAGE GRGFAVVA
Sbjct: 174 SETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVA 233
Query: 355 QEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIG 414
+ VR LA+ SK++AE+IR ++ E+QE + + ++ ++ V+V ++ + ++ + +I
Sbjct: 234 ENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIA 293
Query: 415 ELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
++ + ++++ + V+ +++++ + A +++ + +
Sbjct: 294 RRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLN 353
Query: 475 EVKRNIIELRDIVKKL 490
EVK I +L++ + ++
Sbjct: 354 EVKEEITKLKENIDRI 369
>pir||D82077 methyl-accepting chemotaxis protein VC2439 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657014|gb|AAF95581.1| (AE004313) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 433
Score = 137 bits (342), Expect = 2e-31
Identities = 90/344 (26%), Positives = 171/344 (49%), Gaps = 20/344 (5%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
+L+ + +++ ++ +++ ++S+ +K+ K ++ + + KT L++L+K D + L
Sbjct: 106 MLRQTQYLSDVIKLMAQRNLSEPIKMDCKDEYGDVARELEKTRRQLQDLIKLQIDASQEL 165
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAM 263
S +T SE ++ AQ + I ++ M+ + Q +
Sbjct: 166 TSLTEVMTMSMSETKDS--------------AQEEFNEIDQLATAMSEMSSTVQTVAEHA 211
Query: 264 EEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIA 323
+ S + A+ G+ + IS++ ++ + QAV +V E + ++ I
Sbjct: 212 QNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVVGTIR 271
Query: 324 DIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVE 383
I+EQTNLLALNAAIEAARAGE GRGFAVVA EVRNLA+ ++ A +I+ +++++Q
Sbjct: 272 SISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQSSAN 331
Query: 384 KAVEETEKGVKVVDDSVDFLKET---VGYLMNIGELLDDVESKLQDIKNELANTQEHVEN 440
AV EK V D V+ + + ++N +LL+D+ ++ + +N E +
Sbjct: 332 SAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEEM-- 389
Query: 441 AKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELR 484
+ L N+ + + E+ +++ S+ EE+ R I R
Sbjct: 390 -NENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAFR 432
>pir||G82490 methyl-accepting chemotaxis protein VCA0176 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657567|gb|AAF96089.1| (AE004358) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 644
Score = 137 bits (341), Expect = 3e-31
Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 19/324 (5%)
Query: 160 EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISE 219
+GD+S ++V + + I + + +K V + L+ A ++R + +
Sbjct: 333 DGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHD 392
Query: 220 AINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIARE 279
Q + QV + I+EI A+ + ++ VVN
Sbjct: 393 NSQQQRDQTIQVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVN-------- 444
Query: 280 GKDKGEKAISQV-EDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAI 338
K ++AIS++ DI++ KV+ Q +A ++ +G I++AI I+EQTNLLALNAAI
Sbjct: 445 ---KAKEAISRLAHDIENTGKVVEQ----LASTTQEIGSILDAIRGISEQTNLLALNAAI 497
Query: 339 EAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDD 398
EAARAG+ GRGFAVVA EVRNLA + + E+I+ ++N++Q + AV + G V
Sbjct: 498 EAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQ 557
Query: 399 SVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTAS 458
V E V LM+I + + D+ + + V + +E + A + TT++
Sbjct: 558 GVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTST 617
Query: 459 AEEV---SASAQEQASSMEEVKRN 479
AEE+ S S +E + ++++ N
Sbjct: 618 AEELADASKSLRELSGRLDKLVGN 641
>pir||T44964 transducer protein car [validated] - Halobacterium salinarum
(strain Flx15) >gi|2072795|gb|AAC45264.1| (U74668)
soluble transducer protein HtH [Halobacterium salinarum]
Length = 451
Score = 136 bits (340), Expect = 4e-31
Identities = 84/307 (27%), Positives = 162/307 (52%), Gaps = 8/307 (2%)
Query: 186 ISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEI 245
+ ++ E +K R+L E+ + ++ SE+SE+I++V ++ A ++ E +
Sbjct: 153 VPDISEKVKNQRELHDLHETVSINVGEHLSELSESIDKVGSFAEETEPFAGKEIERMEGF 212
Query: 246 MEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAV 305
+ ++ + + + EE S A EG+ E AI ++ +Q++ + + +
Sbjct: 213 ADKVSNQSATIEEIASSAEEVSQASQRAQDRATEGEQTAETAIDRMGAVQESAERVNDTI 272
Query: 306 QEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESK 365
+ + + +II+AI DIA+QTN+LALNA+IEAARAGE G GFAVVA EV++LAEES+
Sbjct: 273 DGLTSQADEMSEIIDAINDIADQTNMLALNASIEAARAGEKGEGFAVVADEVKSLAEESQ 332
Query: 366 EAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQ 425
E A++I ++ E+ E ++ + + +++++ ++ET+ L I +D+ + ++
Sbjct: 333 ERADEIEQMIVEMVETTDQTADRIGQTTTEIEEAITAVRETLDSLQEIRNAVDETATGVK 392
Query: 426 DIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRD 485
E+A ++H + E +AA+ E E+ + E + E+ D
Sbjct: 393 ----EVAGARDHAAST----EQVAATTDEAVDKLTELEDRLDNLSQIASEQHDRVAEIED 444
Query: 486 IVKKLRE 492
+V +L E
Sbjct: 445 MVDELVE 451
>dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 500
Score = 136 bits (339), Expect = 5e-31
Identities = 103/380 (27%), Positives = 198/380 (52%), Gaps = 46/380 (12%)
Query: 137 FRAISQDVLQTLEIITERMEKI--SEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMK 194
F + + VL +L + + I ++ + + ++ + D ++ ++T L + +
Sbjct: 134 FIGLDEQVLFSLNLYVLLLTVILMAQAKIGEQMRAKVEADHALVVEEKKRTEQLLDRVAE 193
Query: 195 TVRDLALTLESRANDLTR---ISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNI 251
T + E +++ + +S E+ A N+V++ ++Q Q NITE+ E M
Sbjct: 194 TSHVIETFSEKVLSEMEKTKDVSQELVGAFNEVSQGVEQ-------QSGNITEMKETM-- 244
Query: 252 TADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAIS-------QVEDIQDAMKVIRQA 304
+ A+ + + V +A++GK+K E++ + +V ++Q +
Sbjct: 245 -----LKQDQAVSQMAEVSESTKKLAKQGKEKSEESYTNMLGWSKEVTELQATVDETLTT 299
Query: 305 VQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEES 364
+ +++ S+ + I+ + IAEQTNLLALNAAIEAARAGE G+GF+VVA+EVR LA++S
Sbjct: 300 ILGLSKKSQQITSIVATVNQIAEQTNLLALNAAIEAARAGEQGKGFSVVAEEVRKLAQDS 359
Query: 365 KEAAEKIRGILNEIQ-------EKVEKAVEETEKGVKVVD---DSVDFLKETVGYLMNIG 414
+ A +++ IL +IQ EK+ + T+KGV+ +S+ ++ + + +
Sbjct: 360 QAATQQVNAILGDIQKMTGAISEKMMNSKTVTDKGVERATGMLESLTISEQMMSSIASDC 419
Query: 415 ELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
ELLDD S L K++++ T+E V ++ + Q++ A EEV AS ++Q +++
Sbjct: 420 ELLDDRLSLLS--KSQMSLTEEIV--------SVQSVTQQSQAMVEEVFASVEQQNQAIQ 469
Query: 475 EVKRNIIELRDIVKKLREAV 494
V + + EL + +L A+
Sbjct: 470 NVTKQLEELNQLNGRLVAAL 489
>pir||H83106 chemotactic transducer PctC PA4307 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950530|gb|AAG07695.1|AE004847_2 (AE004847)
chemotactic transducer PctC [Pseudomonas aeruginosa]
Length = 632
Score = 136 bits (338), Expect = 7e-31
Identities = 104/365 (28%), Positives = 170/365 (46%), Gaps = 44/365 (12%)
Query: 144 VLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV----- 196
++Q L + M+ I+ EGD++ LKV + +F ++ N+ + + + E ++ V
Sbjct: 303 LMQPLTDMGRAMQDIAQGEGDLTKRLKVTSNDEFGTLANAFNRFVERIHESIREVAGTAR 362
Query: 197 --RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
D+A + + +N S E S N VA AI ++ AQ N AD
Sbjct: 363 QLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARN----------AAD 412
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
+ DA + A +GK E+ I + ++ + + ++ + + N
Sbjct: 413 ASHHASDANHQ-----------AEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVN 461
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G I+ I I+EQTNLLALNAAIEAARAGE GRGFAVVA EVRNLA ++E+A++I+ +
Sbjct: 462 IGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 521
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANT 434
+ E+Q +A V + +S + E+V GE L V S++ +I
Sbjct: 522 IEELQVGAREA-------VATMTESQRYSLESVEIANRAGERLGSVTSRIGEI------- 567
Query: 435 QEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAV 494
++ A E A E++ QE +++ R EL +LR V
Sbjct: 568 DSMNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRHLV 627
Query: 495 EFIKV 499
+ K+
Sbjct: 628 DSFKI 632
>pir||A83451 aerotaxis receptor Aer PA1561 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947522|gb|AAG04950.1|AE004584_6
(AE004584) aerotaxis receptor Aer [Pseudomonas
aeruginosa]
Length = 521
Score = 135 bits (337), Expect = 9e-31
Identities = 92/337 (27%), Positives = 162/337 (47%), Gaps = 25/337 (7%)
Query: 153 ERMEKISEGDVSDDLKVH----AKGDFESILNSMRKTISNLRELMKTVRDLALTLESRAN 208
+R+ +++E SD L ++GD + ++ + L+ + ++D A L +A
Sbjct: 199 KRLMRLAEQTTSDPLIAQMYTDSRGDQARLEMAILSQDARLKTCLTRLQDTAEYLTEQAR 258
Query: 209 DLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSG 268
++ S + Q +QV+ E+ + +TAD TQ+
Sbjct: 259 QADTLAHHSSAGLEQQRAETEQVATAVNEMAATTQEVANNVQLTADATQKA--------- 309
Query: 269 VVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQ 328
NE+ S G+D + + ++ + +++ AV +A+ S +G +++ I IA+Q
Sbjct: 310 --NELTS---RGRDIAAETRNAIQRLSESVGETGAAVSRLAQDSNEIGGVVDVIKGIADQ 364
Query: 329 TNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEE 388
TNLLALNAAIEAARAG+ GRGFAVVA EVR+LA+ + + E+I ++ ++Q AV
Sbjct: 365 TNLLALNAAIEAARAGDQGRGFAVVADEVRSLAQRTAASTEQIHHLIAKLQNTANDAVHT 424
Query: 389 TEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENL 448
E G++ + V + E L+ I E + ++ I E + + +
Sbjct: 425 MESGLQQAEAGVQRVLEADSALVGISEAVSNITEMTTQIAAAAEEQSAVAEEINRNISTI 484
Query: 449 AASAQETTASA-------EEVSASAQEQASSMEEVKR 478
AA A++T+ A EE++ +AQ Q S +E R
Sbjct: 485 AALAEQTSDEALRTAKLSEELTTTAQSQYSLVERFNR 521
>pir||E83067 probable chemotaxis transducer PA4633 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950886|gb|AAG08021.1|AE004877_8 (AE004877) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 712
Score = 134 bits (335), Expect = 2e-30
Identities = 111/441 (25%), Positives = 204/441 (46%), Gaps = 75/441 (17%)
Query: 52 AIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLM----NSTMRPINEMAKIAESI 107
A+ L+ + +L + I MS+ ++ ALG+ ++ RP+ ++ + + I
Sbjct: 338 AVFGELQQLQGELSDQRQQDILGMSLAGLVVAALGLLVVWLVGYGIARPLRQLVGMLDDI 397
Query: 108 AEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDL 167
A+G+ R + S+ DE+G + +GF
Sbjct: 398 AQGEGDLTRRLSSE----RADELGSIAKGFNTFL-------------------------- 427
Query: 168 KVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEA 227
G ++++ + +++ + + + D+A+ R N + +++E I VA A
Sbjct: 428 -----GKLQNMIGQVVQSVQKVSDSSEHTADIAI----RTNQ--GVQQQLAE-IELVATA 475
Query: 228 IQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKA 287
+ +++ AQ N T E N AD A +GK E +
Sbjct: 476 VHEMTATAQDVARNATHAAEAAN-HAD--------------------QAAHQGKQIVESS 514
Query: 288 ISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELG 347
+ ++ + + VQ +A+ S+N+ I+ AI IAEQTNLLALNAAIEAARAGE G
Sbjct: 515 SAAIQALASEIGRAVGVVQNLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQG 574
Query: 348 RGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETV 407
RGFAVVA EVRNLA+++++A E+I+ ++ ++Q+ V+ + + DDSV ++
Sbjct: 575 RGFAVVADEVRNLAQKTQQATEEIQSMIQQLQQGTRDVVKVMQDSQERTDDSVRHARQAA 634
Query: 408 GYLMNIGELLDDVESKLQDIKNELANTQEH----VENAKKALENLAASAQETTASAEEVS 463
L +I + + S + D+ ++A+ E E+ + + N+ A + A+E S
Sbjct: 635 EALESITQAV----SVINDMNTQIASAAEEQSAVAEDINRNVANIGQVANQVAGGADEAS 690
Query: 464 ASAQEQASSMEEVKRNIIELR 484
++ E E+ +R + + R
Sbjct: 691 QASAELTRLAEQQRRLVNQFR 711
>pir||H82402 methyl-accepting chemotaxis protein VCA0906 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658341|gb|AAF96803.1| (AE004418) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 578
Score = 134 bits (335), Expect = 2e-30
Identities = 104/401 (25%), Positives = 194/401 (47%), Gaps = 22/401 (5%)
Query: 94 MRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIIT- 152
M PI+ + E+ + ++A E V + I ++ AI V+ +I+T
Sbjct: 196 MAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGN--ISLVVVAIIAIIGYVVVNRKIVTP 253
Query: 153 -ERMEKISE-GDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDL 210
+RM + + D + DL + + + L + +TI+ K + T+ S+ N +
Sbjct: 254 IDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTIN------KVLGSYGSTI-SKINQV 306
Query: 211 TRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVV 270
S IS+ I + + ++S + ++ E ME M ++ + EE++G
Sbjct: 307 NHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSA 366
Query: 271 NEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTN 330
+ A K EK I + D+ + + +Q++A S NVG++++ I IAEQTN
Sbjct: 367 EKE---ANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTN 423
Query: 331 LLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETE 390
LLALNAAIEAARAGE GRGFAVVA EVR+LA+ ++E+ +I +++ +QEK E +
Sbjct: 424 LLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMS----- 478
Query: 391 KGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAA 450
K + S D ++ T G + E L ++ ++I + E + +++
Sbjct: 479 --TKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISS 536
Query: 451 SAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
+ + E++ + ++ + +++RN+ +L + +R
Sbjct: 537 NLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
>pir||F82392 methyl-accepting chemotaxis protein VCA0988 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658429|gb|AAF96884.1| (AE004425) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 518
Score = 134 bits (335), Expect = 2e-30
Identities = 92/327 (28%), Positives = 160/327 (48%), Gaps = 19/327 (5%)
Query: 176 ESILNSMRKTISN-LRELMKTVR-----DLALTLESRANDLTRISSEISEAINQVAEAIQ 229
E++ RK N L EL+ R ++ L ++ R ++L + I ++ Q+ EA +
Sbjct: 195 ETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAK 254
Query: 230 QVS---------VEAQ-RQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIARE 279
S ++AQ R+ E + + MNITA A S + AR+
Sbjct: 255 MSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAHNAQAA---SDATVHAKNAARD 311
Query: 280 GKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIE 339
G E+ + + ++ MK +++++ S +G ++ I IAEQTNLLALNAAIE
Sbjct: 312 GMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIE 371
Query: 340 AARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDS 399
AARAG+ GRGFAVVA EVR LA+ S E+ ++I+ ++ IQ AVE E+G K+
Sbjct: 372 AARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVETIEQGNKLSVSC 431
Query: 400 VDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASA 459
VD + L + + D+ + + I + E+ +++++++ + ET A
Sbjct: 432 VDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSISDVSTETLGLA 491
Query: 460 EEVSASAQEQASSMEEVKRNIIELRDI 486
E ++ A ++ + + + R +
Sbjct: 492 ENTQNECRQLAHNLAQQTSLVAQFRRV 518
>pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synechocystis sp.
(strain PCC 6803) >gi|1001300|dbj|BAA10787.1| (D64006)
methyl-accepting chemotaxis protein I [Synechocystis
sp.]
Length = 891
Score = 134 bits (334), Expect = 2e-30
Identities = 96/356 (26%), Positives = 172/356 (47%), Gaps = 32/356 (8%)
Query: 146 QTLEIITERMEKISEGDVSDDLKVHAKGD-FESILNSMRKTISNLRELMKTVRDLALTLE 204
+ LE++ E ++ +S GD++ ++ H D +I +S TI +LR ++ V+ A
Sbjct: 567 RALELLME-VDPVSRGDLT--IRAHVTEDEIGTIADSYNATIESLRRIVTQVQTAA---- 619
Query: 205 SRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAME 264
S+ +E + A++Q++ +A RQ ++ E +E + Q +
Sbjct: 620 ----------SQFTETTDTNEVAVRQLAQQANRQALDVAEALERLQAMNKSIQAVAENAA 669
Query: 265 EFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIAD 324
+ V +G+D + + + I++ + + V+ + E S+ + ++N I
Sbjct: 670 QAESAVQRATQTVDQGEDAMNRTVDGIVAIRETVAATAKQVKRLGESSQKISKVVNLIGS 729
Query: 325 IAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEK 384
A+QTNLLALNAAIEAA AGE GRGFAVVA EVR+LA +S EA +I ++ IQ + +
Sbjct: 730 FADQTNLLALNAAIEAAHAGEEGRGFAVVADEVRSLARQSAEATAEIAQLVATIQAETNE 789
Query: 385 AVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKA 444
V E G + V ++ET L I + + ++ I + + E+ +
Sbjct: 790 VVNAMEAGTEQVVVGTKLVEETRRSLNQITAVSAQISGLVEAITSAAIEQSQTSESVTQT 849
Query: 445 LENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
+ +A A + ++ A VSA+ + EL + + L+EAV+ KV+
Sbjct: 850 MALVAQIADKNSSEASGVSATFK--------------ELLAVAQSLQEAVKQFKVQ 891
>pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950533|gb|AAG07698.1|AE004847_5 (AE004847)
chemotactic transducer PctB [Pseudomonas aeruginosa]
Length = 629
Score = 134 bits (334), Expect = 2e-30
Identities = 100/365 (27%), Positives = 168/365 (45%), Gaps = 44/365 (12%)
Query: 144 VLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV----- 196
++Q L + M+ I+ EGD++ LKV + +F ++ S + + + E ++ V
Sbjct: 300 LMQPLTDMGRAMQDIAQGEGDLTKRLKVTSNDEFGALAISFNRFVERIHESIREVAGTAR 359
Query: 197 --RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
D+A + + +N S E S N VA AI ++ AQ N AD
Sbjct: 360 QLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARN----------AAD 409
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
+ DA + A +GK E+ I + ++ + + ++ + + N
Sbjct: 410 ASHHASDANHQ-----------AEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVN 458
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G I+ I I+EQTNLLALNAAIEAARAGE GRGFAVVA EVRNLA ++E+A++I+ +
Sbjct: 459 IGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 518
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANT 434
+ E+Q ++AV + E+ Y + E+ + +L + +A
Sbjct: 519 IEELQIGAQEAVST--------------MTESQRYSLESVEIANRAGERLSSVTGRIAEI 564
Query: 435 QEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAV 494
++ A E A E++ QE +++ R EL +LR+ V
Sbjct: 565 DGMNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLV 624
Query: 495 EFIKV 499
+ K+
Sbjct: 625 DSFKI 629
>gi|10954753 similar to mcpC gene in Rhizobium leguminosarum [Agrobacterium
rhizogenes] >gi|10567417|dbj|BAB16226.1| (AP002086)
similar to mcpC gene in Rhizobium leguminosarum
[Agrobacterium rhizogenes]
Length = 618
Score = 134 bits (333), Expect = 3e-30
Identities = 106/398 (26%), Positives = 187/398 (46%), Gaps = 38/398 (9%)
Query: 72 IGVMSIVAVISGALGMRLMNSTMRP-INEMAKIAESIAEGKLSRAREMVSKIQYREDDEI 130
IG+ +++ ++ L+ T R I EMA E ++ R ++ R E
Sbjct: 196 IGLATVMGRLAAGDHSTLVPVTGRDEITEMAGAVEVFRANAVANIRLEQEAVEQRNLTEE 255
Query: 131 GKLI--EGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISN 188
+ I E R ++ + Q + + E ++ +S GD++ L +FE++ +
Sbjct: 256 DRRIKAESDRLRAEAMAQATQGLGEGLKHLSTGDLTYRLSQPFAAEFETLRADFNGAVGQ 315
Query: 189 LRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEG 248
L E ++ V D A ++S + +++ + ++S+ Q A ++++ + +
Sbjct: 316 LAETLRAVADAANAIDSGSREVSGSADDLSKRTEQQAASLEETAAALDQ----------- 364
Query: 249 MNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEV 308
IT +V + A +E IA + + V DAM+ I Q+
Sbjct: 365 --ITVNVANSSKRA--------DEARMIAAQANTSAAHSGQVVASAVDAMEKIEQS---- 410
Query: 309 AEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAA 368
SK V +II I +IA QTNLLALNA +EAARAG+ G+GFAVVAQEVR LA+ S +AA
Sbjct: 411 ---SKQVSNIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSAKAA 467
Query: 369 EKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIK 428
EI+E + + E + GVK+V ++ LK GY++ + +D + + ++
Sbjct: 468 -------REIKELIRNSSVEVQSGVKLVSETGTALKTIEGYIVTVNHHMDSIATSAREQS 520
Query: 429 NELANTQEHVENAKKALENLAASAQETTASAEEVSASA 466
LA V + + AA +E+ A++ ++ A
Sbjct: 521 VGLAEVNTAVNQMDQVTQQNAAMVEESNAASATLAGEA 558
>sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|94570|pir||S23064 mcpA protein - Caulobacter
crescentus >gi|40424|emb|CAA47122.1| (X66502) mcpA
[Caulobacter crescentus]
Length = 657
Score = 134 bits (333), Expect = 3e-30
Identities = 110/447 (24%), Positives = 200/447 (44%), Gaps = 75/447 (16%)
Query: 58 ENAKSQLKETLWLSIGVMSIVAVIS--GALGMRLMNSTMRPINEMAKIAESIAEG----- 110
E+AK Q + T +S+ ++ + + GAL + +T + IN++A + +++G
Sbjct: 181 ESAKRQAQATAAMSVTIIMSLLTLGAVGALAFLTVMTTRKSINDIAAATDKLSKGDNSID 240
Query: 111 --KLSRAREM--------------VSKIQYREDDEIGKLIEGFR---------AISQDVL 145
K++R E+ V Q R D E + A +Q+
Sbjct: 241 LEKMTRGDELGGIVTALKVFRDNQVHLEQLRADQEKSAALTADERRSKEAAAAAAAQEAS 300
Query: 146 QTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLES 205
+ + E +EK++ GD++ + GD+ + + + +L+E MK + L +
Sbjct: 301 LVVSNLAEGLEKLASGDLTFRVTADFPGDYRKLKDDFNAAMGSLQETMKVIAASTDGLST 360
Query: 206 RANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEE 265
A+++ S ++S Q A ++++ T A++E
Sbjct: 361 GADEIAHASDDLSRRTEQQAASLEE----------------------------TAAALDE 392
Query: 266 FSGVVNEVLSIAREGKDKGEKAISQVE-DIQDAMKVIRQAVQEVAEMSKNVGDI---INA 321
+ V + AR+ D +S + + +V+ QAV + E+ K+ G I I
Sbjct: 393 LTATVRRTAAGARQASD----VVSTTRGEATHSGQVVHQAVSAMGEIEKSSGQISQIIGV 448
Query: 322 IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEK 381
I +IA QTNLLALNA +EAARAGE GRGFAVVAQEVR LA+ S EAA++I+ +
Sbjct: 449 IDEIAFQTNLLALNAGVEAARAGEAGRGFAVVAQEVRALAQRSAEAAKEIKAL------- 501
Query: 382 VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENA 441
+ + ++ +GV +V + + L+ V + I L+ ++ + + L V
Sbjct: 502 ISSSTQQVSQGVSLVGQTGEALQRIVTKVGEIDALVTEIAASAAEQATGLNEVNTAVNQM 561
Query: 442 KKALENLAASAQETTASAEEVSASAQE 468
+ + AA +++TA+ + E
Sbjct: 562 DQVTQQNAAMVEQSTAATHSLKGETAE 588
>pir||A83314 probable chemotaxis transducer PA2654 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948724|gb|AAG06042.1|AE004694_5 (AE004694) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 714
Score = 134 bits (333), Expect = 3e-30
Identities = 87/325 (26%), Positives = 155/325 (46%), Gaps = 21/325 (6%)
Query: 160 EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISE 219
EGD++ L + + + + + L+ +++ V+ S A+ ISS+ S
Sbjct: 403 EGDLTQRLPHTGRDELGELAGWFNRFLDKLQPIIRDVKVSVRDARSTADQSAAISSQTSA 462
Query: 220 AINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIARE 279
+ Q I QV+ + ++ AD + A R+
Sbjct: 463 GMQQQFREIDQVATASHEMTATAQDVARSAAQAADAARGADQA--------------TRD 508
Query: 280 GKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIE 339
G ++ ++ + + V+++A S+ +G ++ I IAEQTNLLALNAAIE
Sbjct: 509 GLALIDRTTQSIDSLAANLTSAMGQVEQLASSSEEIGSVLEVIRAIAEQTNLLALNAAIE 568
Query: 340 AARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDS 399
AARAG+ GRGFAVVA EVRNLA ++++ E+IRG++ +Q+ V+ + S
Sbjct: 569 AARAGDAGRGFAVVADEVRNLARRTQDSVEQIRGVIEGLQQGTRDVVDAMHGSHRQAQGS 628
Query: 400 VDFLKETVGYLMNIGE---LLDDVESKLQDIKNELANTQEHVENAKKAL----ENLAASA 452
V+ + E V L IGE +++D+ ++ E ++ E + A+ E+L++ A
Sbjct: 629 VEQVDEAVAALQRIGEAVTVINDMNLQIASAAEEQSSVAEEINRNVAAIRDVTESLSSQA 688
Query: 453 QETTASAEEVSASAQEQASSMEEVK 477
+E+ ++ ++ A Q ME+ K
Sbjct: 689 EESAQVSQSLNRLANHQQGLMEQFK 713
>gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [Pseudomonas putida]
Length = 538
Score = 133 bits (331), Expect = 5e-30
Identities = 118/478 (24%), Positives = 217/478 (44%), Gaps = 68/478 (14%)
Query: 30 ISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLK---------ETLWLSIGVMSIVAV 80
I L+ +KT K+ + SV+A+ + ++ A+ ++ + L V + +
Sbjct: 92 IDMLWHAYQKTKKIDEEQRSVDALAKLVDEAQDPIERLKGILERGDKAALDTFVENEMYP 151
Query: 81 ISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEG---F 137
+ L L + T + E +K A A +R M++ + +G LI G
Sbjct: 152 LIDPLSEGLSHLTQIQVEE-SKRAYDAAVVLYDSSRTMLALLL------LGILICGGVFA 204
Query: 138 RAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVR 197
+ + ++ L + + +++ GD+S ++V + + + S++ +NLR ++ ++
Sbjct: 205 TRLIRSIIHPLTTLKDAAARVALGDLSQSIQVSGRNEVTDVQQSVQAMQANLRNTLQDIQ 264
Query: 198 DLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQ 257
A L + A E+ A A+ I + + E Q +TE+ ++ AD
Sbjct: 265 GSAAQLAAAAE-------ELQTATESTAQGIHRQNDEMQMAATAVTEMSAAVDEVADNAN 317
Query: 258 RTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGD 317
RT +A +E + +A G+ + ++ + + + V +AE + N+G
Sbjct: 318 RTSNAS-------HEAMDLADGGRKQVMLTRETIDRLSGKLNETTRTVFRLAEEASNIGR 370
Query: 318 IINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNE 377
+++ I IAEQT LLALNAAIEAA AGE GRGFAVVA EVRNLA+ ++ + ++I +++
Sbjct: 371 VLDVIRAIAEQTKLLALNAAIEAAHAGEAGRGFAVVADEVRNLAQRTQTSTQEIERMISA 430
Query: 378 IQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEH 437
IQ T++GV+ V S +F A +Q
Sbjct: 431 IQ-------SVTQEGVRDVQQSCEF----------------------------AARSQTM 455
Query: 438 VENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVE 495
A +AL +A E ++++A+EQA EV RN++ + DI ++ V+
Sbjct: 456 SSEADQALTLIAERITEINGMNLVIASAAEEQAQVAREVDRNLVAISDISEQSTAGVQ 513
>gb|AAA23567.1| (M13463) sensory transducer protein [Escherichia coli]
Length = 535
Score = 132 bits (330), Expect = 6e-30
Identities = 85/337 (25%), Positives = 169/337 (49%), Gaps = 42/337 (12%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
++Q L II + I+ G+++ + V+ + + +I S+ KT++ L
Sbjct: 214 IVQPLAIIGSHFDSIAAGNLARPIAVYGRNEITAIFASL-----------KTMQQ---AL 259
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAM 263
+D+ + S E+ I ++ +S ++Q ++ + T +M
Sbjct: 260 RGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQ--------------TAASM 305
Query: 264 EEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIA 323
E+ + V + AR+ + + A + + + + +QE+A S+ +GDII+ I
Sbjct: 306 EQLTATVGQNADNARQASELAKNAATTAQGGGVQVSTMTHTMQEIATSSQKIGDIISVID 365
Query: 324 DIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVE 383
IA QTN+LALNAA+EAARAGE GRGFAVVA EVRNLA S +AA++I+G+ +E
Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGL-------IE 418
Query: 384 KAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKK 443
++V ++G K+V+++ + + V + + +++ ++ S ++ Q +E +
Sbjct: 419 ESVNRVQQGSKLVNNAAATMIDIVSSVTRVNDIMGEIASASEE-------QQRGIEQVAQ 471
Query: 444 ALENLAASAQETTASAEEVSASAQEQASSMEEVKRNI 480
A+ + Q+ + EE + + ++ A+ + + +
Sbjct: 472 AVSQMDQVTQQNASLVEEAAVATEQLANQADRLSSRV 508
>sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|280349|pir||S28466 transducer
rhodopsin - Halobacterium salinarium
>gi|2648028|emb|CAA48578.1| (X68591) halobacterial
transducer rhodopsin (Htr) [Halobacterium salinarum]
Length = 536
Score = 132 bits (330), Expect = 6e-30
Identities = 78/340 (22%), Positives = 174/340 (50%), Gaps = 10/340 (2%)
Query: 153 ERMEKISEGDVSDDLKVHAKGD-FESILNSMRKTISNLRELMKTVRDLALTLESRANDLT 211
E ME + GD + + V + E+ + + + +L+ ++TV +A +E++ ++
Sbjct: 160 ETMESSATGDFTQRVDVDTDPEAMETFGTAFNQMMDDLQATVRTVTTVADEIEAKTERMS 219
Query: 212 RISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVN 271
S++I + EA+ ++ + Q+ + + + + + +++ +
Sbjct: 220 ETSADIEASAGDTVEAVSKIESQPNDQRTELDSAADDVQQVSASAEEIAATIDDLASRSE 279
Query: 272 EVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNL 331
+V + + +D + A+ ++ I+ + V+ + + + DI++ I DI EQTN+
Sbjct: 280 DVATASDAARDSSKSALDEMSSIETEVDDPVGQVEHLRDQVAEITDIVDVITDIGEQTNM 339
Query: 332 LALNAAIEAARAGEL--GRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEET 389
LALNA+IEAARAG G GF+VVA EV++LAEE+++ A +I ++ ++ + E
Sbjct: 340 LALNASIEAARAGGNADGDGFSVVADEVKDLAEETQDRANEIAAVVEKVTAQTEDVTASI 399
Query: 390 EKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLA 449
+ V+ + ++ T+ ++ I + + +V + + +I+ + E V++ ++E +A
Sbjct: 400 QHTRTRVESGSETVESTLLHIRTIADSISEVSNSIDEIQRTTSEQAETVQSTATSVERVA 459
Query: 450 ASAQETTASAEEVSA-------SAQEQASSMEEVKRNIIE 482
+ +TTA A + + SA+E A+S+E+ + +E
Sbjct: 460 GLSDDTTALASDAESPVIGQRESAEEIAASLEQFQNTAVE 499
>dbj|BAA23410.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 632
Score = 132 bits (330), Expect = 6e-30
Identities = 105/367 (28%), Positives = 170/367 (45%), Gaps = 48/367 (13%)
Query: 144 VLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV----- 196
++Q L + M+ I+ EGD++ LKV + +F ++ N+ + + + E ++ V
Sbjct: 303 LMQPLTDMGRAMQDIAQGEGDLTKRLKVTSNDEFGTLANAFNRFVERIHESIREVAGTAR 362
Query: 197 --RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
D+A + + +N S E S N VA AI ++ AQ N AD
Sbjct: 363 QLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARN----------AAD 412
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
+ DA + A +GK E+ I + ++ + + ++ + + N
Sbjct: 413 ASHHASDANHQ-----------AEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVN 461
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G I+ I I+EQTNLLALNAAIEAAR GE GRGFAVVA EVRNLA ++E+A++I+ +
Sbjct: 462 IGQILEVIKGISEQTNLLALNAAIEAARDGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 521
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDI--KNELA 432
+ E+Q +A V + +S + E+V GE L V S++ +I N+
Sbjct: 522 IEELQVGAREA-------VATMTESQRYSLESVEIANRAGERLGSVTSRIGEIDSMNQCV 574
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
T A E A E++ QE +++ R EL +LR
Sbjct: 575 AT---------ATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRH 625
Query: 493 AVEFIKV 499
V+ K+
Sbjct: 626 LVDSFKI 632
>gb|AAG13635.1| (AF036940) putative chemotaxis protein [Ralstonia sp. U2]
Length = 423
Score = 132 bits (330), Expect = 6e-30
Identities = 92/345 (26%), Positives = 167/345 (47%), Gaps = 35/345 (10%)
Query: 133 LIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLREL 192
L+ F AI + VL LE +I++GD++ + + + ++ ++ +L +
Sbjct: 55 LLASFWAIRKAVLGPLEEALRLAGQIAQGDLTGQIVTRSNDEVGQLITALADMQGSLSSM 114
Query: 193 MKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNIT 252
+ VR A +LE+ A +++A+ +S + Q ++ E
Sbjct: 115 VAHVRQNAESLEA--------------ASSEIAQGNHDLSARTESQASSLEE-------- 152
Query: 253 ADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMS 312
T +MEE V + AR + A + +A+ + + + E S
Sbjct: 153 ------TAASMEELGSTVRQNADNARHANQLAQSASTVAVQGGEAVAQVVNTMTGINESS 206
Query: 313 KNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIR 372
+ + DII+ I IA QTN+LALNAA+EAARAGE GRGFAVVA EVR+LA+ S EAA++I+
Sbjct: 207 RKIADIISVIDGIAFQTNILALNAAVEAARAGEHGRGFAVVATEVRSLAQRSAEAAKEIK 266
Query: 373 GILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
++N+ +V E+G +VD + ++E V + + +++ ++ + + +A
Sbjct: 267 TLIND-------SVGRVEQGSALVDQAGTTMREVVDSIRRVTDIMGEISAASTEQSQGVA 319
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVK 477
E V N +A + AA ++ A+A + ++E ++ K
Sbjct: 320 QVGEAVTNMDQATQQNAALVEQMAAAASRLKGQSEELVQTVAVFK 364
>sp|P07018|MCP4_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN IV (MCP-IV) (DIPEPTIDE
CHEMORECEPTOR PROTEIN) >gi|7428890|pir||QRECM2
methyl-accepting chemotaxis protein II - Escherichia
coli >gi|1736538|dbj|BAA15701.1| (D90830)
Methyl-accepting chemotaxis protein IV (MCP-IV)
(Dipeptide chemoreceptor protein). [Escherichia coli]
>gi|1736544|dbj|BAA15706.1| (D90831) Methyl-accepting
chemotaxis protein IV (MCP-IV) (Dipeptide chemoreceptor
protein). [Escherichia coli] >gi|1788194|gb|AAC74955.1|
(AE000282) methyl-accepting chemotaxis protein IV,
peptide sensor receptor [Escherichia coli K12]
Length = 533
Score = 132 bits (329), Expect = 8e-30
Identities = 85/337 (25%), Positives = 169/337 (49%), Gaps = 42/337 (12%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
++Q L II + I+ G+++ + V+ + + +I S+ KT++ L
Sbjct: 214 IVQPLAIIGSHFDSIAAGNLARPIAVYGRNEITAIFASL-----------KTMQQ---AL 259
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAM 263
+D+ + S E+ I ++ +S ++Q ++ + T +M
Sbjct: 260 RGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQ--------------TAASM 305
Query: 264 EEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIA 323
E+ + V + AR+ + + A + + + + +QE+A S+ +GDII+ I
Sbjct: 306 EQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVID 365
Query: 324 DIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVE 383
IA QTN+LALNAA+EAARAGE GRGFAVVA EVRNLA S +AA++I+G+ +E
Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGL-------IE 418
Query: 384 KAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKK 443
++V ++G K+V+++ + + V + + +++ ++ S ++ Q +E +
Sbjct: 419 ESVNRVQQGSKLVNNAAATMIDIVSSVTRVNDIMGEIASASEE-------QQRGIEQVAQ 471
Query: 444 ALENLAASAQETTASAEEVSASAQEQASSMEEVKRNI 480
A+ + Q+ + EE + + ++ A+ + + +
Sbjct: 472 AVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRV 508
>gb|AAB50497.1| (U30319) DcrH [Desulfovibrio vulgaris]
Length = 959
Score = 132 bits (329), Expect = 8e-30
Identities = 102/434 (23%), Positives = 202/434 (46%), Gaps = 47/434 (10%)
Query: 67 TLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYRE 126
TLW ++ V+++ ++ + +RL+ + RP+ + A +A G L R
Sbjct: 421 TLWGTLLVLALGTLLGSGIAIRLVGALSRPLQRLQVYAGDVAAGNLDA----------RP 470
Query: 127 DDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTI 186
+ + ++ R + ++Q L + + + +D + H L+ R +
Sbjct: 471 EGQYPAELDAMRHSIESMVQNLRMRIHEADA-KRMEAADSAQAHRP------LDKARASE 523
Query: 187 SNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIM 246
+ ++ LM+ + + +S +S +IN + + ++ + Q+ + +
Sbjct: 524 TRIKGLMER-------MTGGGSKARSVSEHVSRSINDLTAQVHTITQAVETQRHRMDDTA 576
Query: 247 EGMNITADVTQRTV--DAMEEFSGVVNEVLSIAREGKDKGE-KAISQVEDIQDAMKVIRQ 303
+ M+ T RT+ D + + LS + E A++ + +++ ++ +
Sbjct: 577 QAMD-----TMRTMVSDVADNWRAAEQADLSRGHGSRAPREWAAVASIGQVRERIERLNT 631
Query: 304 AVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEE 363
A+ + E + ++G +++ I+DIA+QTNLLALNAAIEAARAG+ GRGFAVVA EVR LAE+
Sbjct: 632 AMARLGEEADSIGKVMSVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEK 691
Query: 364 SKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESK 423
+ +A ++ + IQ + E ++ S D G ++DD+ S+
Sbjct: 692 TMQATGEVGSAVTRIQTHTRDNIAAVETAMRERTASADATAS--------GRVMDDIVSR 743
Query: 424 LQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIEL 483
+ + T V++ A + AA+A + EEV+A A + A+SM + ++
Sbjct: 744 VDE-------TAGMVQSIAAASDQQAAAATMVGRNVEEVNAIAGDTAASMSHFAGTLEDI 796
Query: 484 RDIVKKLREAVEFI 497
V++L +E I
Sbjct: 797 FSQVQELFSMIEVI 810
>gb|AAD34887.1|AF141674_1 (AF141674) putative chemotaxis chemoreceptor McpG [Rhizobium
leguminosarum]
Length = 653
Score = 132 bits (329), Expect = 8e-30
Identities = 107/420 (25%), Positives = 204/420 (48%), Gaps = 29/420 (6%)
Query: 51 EAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEG 110
++I + ++ S K ++G+ +++++++ A+ R + + P+ ++ +++A+G
Sbjct: 181 KSIGGEVRSSASGFKPFALTALGIAAVLSLVAAAVTARTI---VGPLAKLQLSLKAMADG 237
Query: 111 KLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVH 170
L R + ++ DEIGKL + + E + K + VS+ ++
Sbjct: 238 NLDGDRRLEAR-----GDEIGKLARAVAGLRDAISAKAEREADAEAKRA---VSERHRLE 289
Query: 171 AKGDFESILNSMR-KTISNLRELMKTVRDLALTLESRAN---DLTRISSEISEAINQVAE 226
D L K + L + ++ + D LT + L ++ ++ + A+ ++
Sbjct: 290 QDADERRTLAEQTDKAVGQLGDALQALADGDLTQQIGTPFIPSLEKLRADFNSAVEKLRA 349
Query: 227 AIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEK 286
A+Q+V+ A EI + A T++ ++EE + + E+ + + +K ++
Sbjct: 350 AMQKVAQNASAIAAGAQEIRSASDDLAKRTEQQAASVEETAAALEEITTTVADSSNKAQE 409
Query: 287 AISQVEDIQDAMK----VIRQAVQEVAEMSKN---VGDIINAIADIAEQTNLLALNAAIE 339
A V +D+ + V+R AV + ++ + +G II I +IA QTNLLALNA +E
Sbjct: 410 AGQLVRKTKDSAERSGSVVRDAVDAMGKIESSATEIGSIIGVIDEIAFQTNLLALNAGVE 469
Query: 340 AARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVE---ETEKGVKVV 396
AARAGE G+GFAVVAQEVR LA+ S +AA++I+ ++N V+ V ET K +K +
Sbjct: 470 AARAGEAGKGFAVVAQEVRELAQRSAKAAKEIKELINASNGHVKSGVALVGETGKALKEI 529
Query: 397 DDSVDFLKETVGYLMNIGEL----LDDVESKLQDIKNELANTQEHVENAKKALENLAASA 452
+ V + VG ++ + L ++ + + + VE A A NLA A
Sbjct: 530 AEQVQQVDGNVGAIVGASQEQATGLKEINTAVNRMDQGTQQNAAMVEEATAASHNLAKEA 589
>pir||C83440 probable chemotaxis transducer PA1646 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947615|gb|AAG05035.1|AE004592_6 (AE004592) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 652
Score = 132 bits (329), Expect = 8e-30
Identities = 89/336 (26%), Positives = 174/336 (51%), Gaps = 21/336 (6%)
Query: 156 EKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISS 215
++I+EGD++ + + + ++ +MR +LR ++ ++D + RI+
Sbjct: 337 QRIAEGDLAVRVDSERRDEVGQLMAAMRAMTGSLRGIVSQLQD----------GVGRIAG 386
Query: 216 EISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLS 275
SEA++ V + + +++QR + ++ MN A EE +G
Sbjct: 387 A-SEALSGVTTRTR-LGIDSQRAETE--QVATAMNQMAATVHEVAHNAEEAAGAAESADG 442
Query: 276 IAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALN 335
G++ + + ++E + +A++ +V+ ++ S+ +G +++ I +AEQTNLLALN
Sbjct: 443 KVSVGQEVVRQTLERIERLAEAVRAATASVEALSADSQRIGSVLDVIKSVAEQTNLLALN 502
Query: 336 AAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKV 395
AAIEAARAG+ GRGFAVVA EVR LA ++++ +I ++ +Q ++AV+ ++ ++
Sbjct: 503 AAIEAARAGDQGRGFAVVADEVRALARRTQQSTAEIETLIGALQNGTQQAVQRMQRSHQL 562
Query: 396 VDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQET 455
VD SVD +T L NI + + +Q + ++A E + + + +E
Sbjct: 563 VDQSVDDALQTEAALGNIATAV----ALIQQMNQQIAAASEQQSAVAEEINRSVTAIREV 618
Query: 456 TASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
A++ + + Q ASS E++ EL+ +V+ R
Sbjct: 619 ---ADQSAQAMQSTASSSEQLAELGRELQGMVRHFR 651
>pir||H83324 probable chemotaxis transducer PA2573 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948634|gb|AAG05961.1|AE004685_7 (AE004685) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 535
Score = 132 bits (329), Expect = 8e-30
Identities = 89/362 (24%), Positives = 171/362 (46%), Gaps = 28/362 (7%)
Query: 138 RAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVR 197
R + + VLQ L + I++G++ + + V + + + ++ + NLR+++ +R
Sbjct: 202 RQLLRAVLQPLRKLVSSARVIAQGNLQEPIGVDSNDEAGQLQRALGEMQENLRQMITIIR 261
Query: 198 DLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQ 257
+ L + + + S I +Q A++ ++ + NI++I + + ++
Sbjct: 262 QESEELHDTSQSIGQTSQSIVHGASQQADSATSMAASMEEMITNISQISDHADNARVISA 321
Query: 258 RTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGD 317
++ EE + +V+ EG + I D + ++ + + S +
Sbjct: 322 KS----EELASSGGQVILNVVEGMSR----------IADVVNQSSTSITALGQSSDEIHS 367
Query: 318 IINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNE 377
II I IAEQTNLLALNAAIEAARAGE GRGFAVVA EVR LA + ++ ++I ++
Sbjct: 368 IIQVIKGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAARTTQSTQEITAMIER 427
Query: 378 IQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEH 437
I+ +A+ E GV V++ V F ++ ++I E+LD +
Sbjct: 428 IRASTGQAINSMEAGVSRVNEGVSFARQAG---VSINEILDGTR-----------HAASV 473
Query: 438 VENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFI 497
V+ + + + ++ E E ++ +Q+ +M E+ L ++ +R +VE
Sbjct: 474 VDEISQTIREQSRASDEIAQRVELIAQRSQQNTQAMHEMAATARRLNEVAATMRSSVERF 533
Query: 498 KV 499
K+
Sbjct: 534 KI 535
>dbj|BAA23413.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 629
Score = 131 bits (327), Expect = 1e-29
Identities = 99/365 (27%), Positives = 167/365 (45%), Gaps = 44/365 (12%)
Query: 144 VLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV----- 196
++Q L + M+ I+ EGD++ LKV + +F ++ S + + + E ++ V
Sbjct: 300 LMQPLTDMGRAMQDIAQGEGDLTKRLKVTSNDEFGALAISFNRFVERIHESIREVAGTAR 359
Query: 197 --RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
D+A + + +N S E S N VA AI ++ AQ N AD
Sbjct: 360 QLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARN----------AAD 409
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
+ DA + A +GK E+ I + ++ + + ++ + + N
Sbjct: 410 ASHHASDANHQ-----------AEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVN 458
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G I+ I I+EQTNLLALNAAIEAARAGE GRGFAVVA EVRNLA ++E+A++I+ +
Sbjct: 459 IGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 518
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANT 434
+ E+Q ++AV + E+ Y + E+ + +L + +A
Sbjct: 519 IEELQIGAQEAVST--------------MTESQRYSLESVEIANRAGERLSSVTGRIAEI 564
Query: 435 QEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAV 494
++ A E A E++ QE +++ EL +LR+ V
Sbjct: 565 DGMNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLLACGELETQAGRLRQLV 624
Query: 495 EFIKV 499
+ K+
Sbjct: 625 DSFKI 629
>sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|79266|pir||S15910
hemolysin-releasing protein - Vibrio cholerae
>gi|2190531|emb|CAA68638.1| (Y00557) methyl accepting
chemotaxis protein [Vibrio cholerae]
Length = 548
Score = 131 bits (326), Expect = 2e-29
Identities = 97/327 (29%), Positives = 166/327 (50%), Gaps = 28/327 (8%)
Query: 178 ILNSMRKTISNLRELMKTVR---DLALTLESRAND-LTRISSEISEAINQVAEAIQQVSV 233
I+ ++R ++ L++ M + L LE ND L I + I++V +I++V+
Sbjct: 216 IITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAE 275
Query: 234 EAQRQQENITEIMEGMNITA-------DVTQRTVDAMEEFSGVVNEVLSIAREGKD---- 282
++ + + + ++T D T + A+ E V+E+ S A +D
Sbjct: 276 NSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMARDVANE 335
Query: 283 ------KGEKAISQVED-IQDAMKVIRQAVQEVAEMSKNVGDI---INAIADIAEQTNLL 332
+G+K + +V++ IQ + + A Q V+ ++ + I ++ I I+EQTNLL
Sbjct: 336 ATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLL 395
Query: 333 ALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKG 392
ALNAAIEAARAGE GRGFAVVA EVR LA S + E+I+ ++N +Q + +AVE EKG
Sbjct: 396 ALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKG 455
Query: 393 VKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASA 452
D V+F + L I +D + + + VE+ + +E++
Sbjct: 456 RSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLT 515
Query: 453 QETTASAEEV---SASAQEQASSMEEV 476
ET+ A+E+ SAS Q +S ++++
Sbjct: 516 TETSHVADELSRASASLQRLSSQLDKL 542
>sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ protein - Pseudomonas
aeruginosa >gi|11352735|pir||C83594 twitching motility
protein PilJ PA0411 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|401797|gb|AAA25952.1| (L22036)
methyl-accepting chemotaxis protein (MCP) homologue
[Pseudomonas aeruginosa]
>gi|9946266|gb|AAG03800.1|AE004478_5 (AE004478)
twitching motility protein PilJ [Pseudomonas aeruginosa]
Length = 682
Score = 131 bits (325), Expect = 2e-29
Identities = 120/491 (24%), Positives = 228/491 (45%), Gaps = 65/491 (13%)
Query: 39 KTMKVVQTGGSVEAIRE-TLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNST-MRP 96
+ +K +Q G + +I + T A +L E + + +SG++ L S +
Sbjct: 221 RVLKGMQEGNAAMSISKVTNAEAVDRLNE-------IAELFEFVSGSVDEILETSPDLFQ 273
Query: 97 INEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFR----AISQDVLQTLEIIT 152
+ E A S+++ L +A ++ + L G+ A++ +L L ++
Sbjct: 274 VREAANNIFSVSQTLLDKASQLADGFENLAGGRSINLFAGYALGALALASIILIGLVMVR 333
Query: 153 ERMEKISE-------------------GDVSD-DLKVHAK--GDFE-SILNSMRKTISNL 189
E +++E D++D DL V A DF +I +S+ +I L
Sbjct: 334 ETNRRLAETAEKNDRNQAAILRLLDEIADLADGDLTVAATVTEDFTGAIADSINYSIDQL 393
Query: 190 RELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGM 249
REL++T+ A+ + + A + + ++EA A+ I S +I ++
Sbjct: 394 RELVETINQTAVQVAAAAQETQSTAMHLAEASEHQAQEIAGASAAINEMAVSIDQVSANA 453
Query: 250 NITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVA 309
+ ++ V +R+V +IA +G + I+ +++I++ ++ + ++ +
Sbjct: 454 SESSAVAERSV--------------AIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLG 499
Query: 310 EMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
E S+ +GDI++ I DIA+QTN+LALNAAI+A+ AG+ GRGFAVVA EV+ LAE S A +
Sbjct: 500 ESSQEIGDIVSLINDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATK 559
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKN 429
+I ++ IQ +AV E+ V ++ L I ++ + + +Q+I N
Sbjct: 560 QIEALVKTIQTDTNEAVISMEQTTSEVVRGARLAQDAGVALEEIEKVSKTLAALIQNISN 619
Query: 430 ---ELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDI 486
+ A++ H+ N ++ + + + SA A S+ + + E+R+
Sbjct: 620 AARQQASSAGHISNTMNVIQEITS----------QTSAGTTATARSIGNLAKMASEMRNS 669
Query: 487 VK--KLREAVE 495
V KL E VE
Sbjct: 670 VSGFKLPEGVE 680
>pir||H82503 methyl-accepting chemotaxis protein VCA0068 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657452|gb|AAF95982.1| (AE004350) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 547
Score = 131 bits (325), Expect = 2e-29
Identities = 84/310 (27%), Positives = 151/310 (48%), Gaps = 18/310 (5%)
Query: 190 RELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGM 249
R++ TV L T+ES L RIS++++ A ++A + Q SV + ++++ + ++ +
Sbjct: 256 RDVNATVTQLRQTVES----LVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAV 311
Query: 250 NITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVA 309
N Q D G + +A + E++ + D ++ Q V ++
Sbjct: 312 NQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLK 371
Query: 310 EMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
E S+ +G++ I I+EQTNLLALNAAIEAARAGE GRGFAVVA EVR LA ++ + +
Sbjct: 372 EQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQ 431
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKN 429
+I+ I+ E+Q + A + +++ + + L I + S L I
Sbjct: 432 EIQAIIEELQNQSNTANSSMHSSLSLLEQNQSLAAKVSASLTEINHSI----SALGQINA 487
Query: 430 ELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKK 489
++A E K + ++ E ++ V+ Q A+S EL D+ ++
Sbjct: 488 QVATASEEQSQVTKDINRNLSNIYELV--SQNVTGITQSAAASH--------ELSDLAEQ 537
Query: 490 LREAVEFIKV 499
+ +++ +V
Sbjct: 538 QHQQLQYFRV 547
>pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655898|gb|AAF94560.1| (AE004218) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 641
Score = 130 bits (324), Expect = 3e-29
Identities = 81/358 (22%), Positives = 183/358 (50%), Gaps = 8/358 (2%)
Query: 134 IEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELM 193
++G ++SQ + E ++ + + ++ D V A + + + +R T +++ +
Sbjct: 290 LKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELR-TSTDIVKSS 348
Query: 194 KTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITA 253
+ V A L + ++ R S+EI A+NQ++ Q ++ + ++T+I +G +
Sbjct: 349 EEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGK 408
Query: 254 DVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSK 313
+ + ++ A E+ +L+ E K ++ I + + A + + +S+
Sbjct: 409 ERAESSLKACEK-------MLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISR 461
Query: 314 NVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRG 373
+ I++ I++++ QT +LA+N A+EAARAGE G+GFAVV+ +++NLA ++ E AE+I+
Sbjct: 462 QIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKD 521
Query: 374 ILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELAN 433
+ IQE++ ++ + V + T+ L N+ + DV + I
Sbjct: 522 QVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGG 581
Query: 434 TQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
+ + +A+ ++ +A +A+E++ + E + +A++Q+SS E+ I + + +L+
Sbjct: 582 IERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
Score = 110 bits (273), Expect = 3e-23
Identities = 83/318 (26%), Positives = 156/318 (48%), Gaps = 45/318 (14%)
Query: 180 NSMRKTISNLRELMKTV---RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQ 236
N+ +K +LR +T+ + A + S +L E S A+ Q+ +++Q++V A+
Sbjct: 25 NAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAE 84
Query: 237 RQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGK-----------DKGE 285
++ T+++ A+ + + +NE + A + K D
Sbjct: 85 E--------------SSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVAN 130
Query: 286 KAISQVEDIQDAMKVIRQAVQEVAEMSKN---VGDIINAIADIAEQTNLLALNAAIEAAR 342
K V ++Q + + +V+ + E+S+ + D + + IA+QTNLLALNAAIEA R
Sbjct: 131 KINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGR 190
Query: 343 AGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDF 402
AG+ G+GFAVVA VR LAE++++ A I ++ +I E + + + V
Sbjct: 191 AGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQ- 249
Query: 403 LKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEV 462
G+++N +L I+NE+ + + E KA + ++++A +E V
Sbjct: 250 ----KGHVVN---------KQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESV 296
Query: 463 SASAQEQASSMEEVKRNI 480
S +AQEQ+++ EE +++
Sbjct: 297 SQAAQEQSAACEESLKSL 314
>pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657614|gb|AAF96132.1| (AE004362) hemolysin
secretion protein HylB [Vibrio cholerae]
Length = 548
Score = 130 bits (323), Expect = 4e-29
Identities = 97/327 (29%), Positives = 165/327 (49%), Gaps = 28/327 (8%)
Query: 178 ILNSMRKTISNLRELMKTVR---DLALTLESRAND-LTRISSEISEAINQVAEAIQQVSV 233
I+ ++R ++ L++ M + L LE ND L I + I++V +I++V+
Sbjct: 216 IITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAE 275
Query: 234 EAQRQQENITEIMEGMNITA-------DVTQRTVDAMEEFSGVVNEVLSIAREGKD---- 282
++ + + + ++T D T + A+ E V+E+ S A D
Sbjct: 276 NSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQ 335
Query: 283 ------KGEKAISQVED-IQDAMKVIRQAVQEVAEMSKNVGDI---INAIADIAEQTNLL 332
+G+K + +V++ IQ + + A Q V+ ++ + I ++ I I+EQTNLL
Sbjct: 336 ATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLL 395
Query: 333 ALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKG 392
ALNAAIEAARAGE GRGFAVVA EVR LA S + E+I+ ++N +Q + +AVE EKG
Sbjct: 396 ALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKG 455
Query: 393 VKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASA 452
D V+F + L I +D + + + VE+ + +E++
Sbjct: 456 RSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLT 515
Query: 453 QETTASAEEV---SASAQEQASSMEEV 476
ET+ A+E+ SAS Q +S ++++
Sbjct: 516 TETSHVADELSRASASLQRLSSQLDKL 542
>pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656156|gb|AAF94794.1| (AE004242) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 596
Score = 129 bits (322), Expect = 5e-29
Identities = 104/458 (22%), Positives = 204/458 (43%), Gaps = 65/458 (14%)
Query: 40 TMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINE 99
T+ VQ ++ ++E L+ Q E + + A A + L+ NE
Sbjct: 159 TVLDVQEKAVIQTLKEKLDQVTRQGFEP-----ALQQLKAEKYDAANLILLQVINPLYNE 213
Query: 100 MAKIAESIAEGKLSRAREMVSKIQYREDDEIG--KLIEGFRAI---------SQDVLQTL 148
+ K AE+ + + + S Q+ + I L+ F I ++ V +
Sbjct: 214 IKKAAEAFLDIQTQEGKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAV 273
Query: 149 EIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRAN 208
+ I+ GD++ + V +F I + + +++ +E++ + R L + A
Sbjct: 274 HHLASSATHIAAGDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAE 333
Query: 209 DLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSG 268
+ ++ + + I + QQ++ + + E+ + + A+ ++ A
Sbjct: 334 ENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQA------ 387
Query: 269 VVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQ 328
A +G+ E+ I+ +E + + ++ + A+Q +A+ S+++G +++ I I+EQ
Sbjct: 388 --------AMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQ 439
Query: 329 TNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEE 388
TNLLALNAAIEAARAGE GRGFAVVA EVR LA ++E+ ++I + +Q+ +
Sbjct: 440 TNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQTVQRLQQSSRDSANL 499
Query: 389 TEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENL 448
E+GV +V+ K LA T AL +
Sbjct: 500 IEQGVSGASKAVE--------------------------KARLAGT---------ALSQI 524
Query: 449 AASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDI 486
A+ + +++ +++EQ++ EE+ +NII + +I
Sbjct: 525 TANVDRISTMNTQIATASEEQSAVTEEINKNIITISEI 562
>gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [Treponema
denticola]
Length = 729
Score = 129 bits (322), Expect = 5e-29
Identities = 100/372 (26%), Positives = 176/372 (46%), Gaps = 35/372 (9%)
Query: 157 KISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSE 216
KI+ GD++D L V + I+ ++ I N ++ ++D A + S + L+ E
Sbjct: 359 KIASGDLTDRLAVKKNNEVGRIMMNLNTAIENNHTMICLLKDEADKMNSIGSQLSSSMEE 418
Query: 217 ISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNE---V 273
+ AI Q+ E ++ V +A Q +TE + + R V ++E + +NE V
Sbjct: 419 TAAAIKQIGENVKGVKEKAMSQAAGVTETVATVEQINGRLSRLVSSIEMQTESINESSVV 478
Query: 274 LSIAREGKDKGEKAISQVEDI-----------QDAMKVIRQAVQEVAEMSKNVGDIINAI 322
++ E K K + Q ++ +D + + V+++AE S ++ + I
Sbjct: 479 ITRMAENTVKIAKTLDQNNELIKTVYGQTKVGKDGARTANEIVKQIAEKSASLLEASQII 538
Query: 323 ADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQE-- 380
+IA QTNLLA+NAAIEAA AGE G+GFAVVA E+R LAE S ++I ++ E E
Sbjct: 539 QNIASQTNLLAMNAAIEAAHAGESGKGFAVVADEIRKLAEGSNLQGKQIAAVIKETTEII 598
Query: 381 --------KVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNEL- 431
+ EK + V + + D + E + G+ + D ++ D+ +E+
Sbjct: 599 HDITEAGSRAEKTFIDVYNLVSQISEKEDSILEVMREQEENGKHVLDAIKRINDVTSEID 658
Query: 432 ---ANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVK 488
A E + ++ LA ETT S E+++ A + +++EV DI +
Sbjct: 659 SASAEMLEGGNQIGQEMQKLAEITLETTDSMNEIASGADQITIAVKEVS-------DITQ 711
Query: 489 KLREAVEFIKVE 500
K + ++E + E
Sbjct: 712 KNKASIENLSNE 723
>pir||E75590 methyl-accepting chemotaxis-related protein - Deinococcus
radiodurans (strain R1)
>gi|6460727|gb|AAF12432.1|AE001863_57 (AE001863)
methyl-accepting chemotaxis-related protein [Deinococcus
radiodurans]
Length = 756
Score = 129 bits (322), Expect = 5e-29
Identities = 102/437 (23%), Positives = 210/437 (47%), Gaps = 42/437 (9%)
Query: 77 IVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEG 136
++ ++ L + ++ +R + ++ A+++ +G L+ + DE+G L
Sbjct: 350 LITALATWLLVYILQRIVRQLRQLTTNAQALTDGNLN------IHLPVTTSDELGVLTSS 403
Query: 137 FRAISQDVLQTLEIIT-ERME--KISE--GDVSDDLKVHAKGDF-------ESILNSMRK 184
F + + E + ER+E ++ + G D A+GD E IL ++
Sbjct: 404 FNEAAAQLRTNAERVEQERLESQRLQDHIGQFLDVTMDIAEGDLTKRGVVTEDILGNVVD 463
Query: 185 TISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITE 244
+I+ + + + T + + ++ +EAI Q A Q + EAQR E +++
Sbjct: 464 SINLMTDELATTLQQVQAASASVSGGSKQMLGTTEAIQQGA---QLTAAEAQRVAEQVSQ 520
Query: 245 IMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQA 304
I G+ A Q + E L +++G++ ++ + +++I+ ++ + +
Sbjct: 521 ITAGIRQMAHNAQTSAQT-------AREALLASQQGQEALQETLGGMQNIRREVQQVSKR 573
Query: 305 VQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEES 364
++ + + S + +I++ I+ IAEQT+LLA+NA+IEAA AGE G F +VA VR LA S
Sbjct: 574 IKTLGDRSLEIQEIVDTISQIAEQTHLLAVNASIEAAGAGEAGGRFGIVADSVRKLANTS 633
Query: 365 KEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKL 424
+A +I G++ +Q +V+ + E E+G + V+ L +IGEL E
Sbjct: 634 AQATTRIAGLIKSVQAEVQDVIVEAEEGTREVEQGYRIAGSAGQRLQDIGEL---TERSA 690
Query: 425 QDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELR 484
Q ++ A+TQE V+ S + A+ ++++ AQ S++++ + +L
Sbjct: 691 QLAESIAASTQEQVQ-----------SVERVNAAVQQIAEVAQRSESAVQQGRTAAQQLE 739
Query: 485 DIVKKLREAVEFIKVEG 501
D+ ++L ++ ++ G
Sbjct: 740 DLARQLDTSLARFRLPG 756
>pir||F82382 methyl-accepting chemotaxis protein VCA1069 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658515|gb|AAF96963.1| (AE004432) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 639
Score = 129 bits (322), Expect = 5e-29
Identities = 94/390 (24%), Positives = 177/390 (45%), Gaps = 37/390 (9%)
Query: 95 RPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITER 154
+P+N+M + I G L + S R+ +E+G + I++
Sbjct: 279 QPLNDMLMVQIGIGLGILLVMALLTSWFVARQLNELGNIANALADIAE------------ 326
Query: 155 MEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRIS 214
+GD++ L V ++ + + + K + L +++K VR++++ L
Sbjct: 327 ----GDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVREVSVAL----------- 371
Query: 215 SEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVL 274
++ + A + Q S + QQ+ IT + + A T E + + +
Sbjct: 372 ---TQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQSV 428
Query: 275 SIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLAL 334
+ +G + +++ ++ + + + + E+ + + I++ I IAEQTNLLAL
Sbjct: 429 QLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNLLAL 488
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVK 394
NAAIEAARAGE GRGFAVVA EVR L++ + + E+I+ + +Q+ AV + K
Sbjct: 489 NAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESHK 548
Query: 395 VVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNE-------LANTQEHVENAKKALEN 447
+V+ SV + +T L I E + + I + A+ + E+ ++ +
Sbjct: 549 LVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQ 608
Query: 448 LAASAQETTASAEEVSASAQEQASSMEEVK 477
LA AQ++ A+ + A AQE + K
Sbjct: 609 LAEEAQQSVQQAKSLHAMAQELNKEISRFK 638
>sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDUCER (CITRATE
CHEMORECEPTOR PROTEIN) >gi|421247|pir||A47178
methyl-accepting transmembrane citrate/phenol
chemoreceptor Tcp - Salmonella typhimurium
>gi|154381|gb|AAA27231.1| (L06029) chemoreceptor
[Salmonella typhimurium]
Length = 547
Score = 129 bits (321), Expect = 7e-29
Identities = 98/357 (27%), Positives = 175/357 (48%), Gaps = 56/357 (15%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
+L+ L+ I ++ I++GD++ +++ + + + ++ +L + VRD A ++
Sbjct: 217 LLRPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSI 276
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAM 263
+ A +++ SS++S Q A A+++ + ++ +TA V Q T D
Sbjct: 277 YTGAGEISAGSSDLSSRTEQQASALEETAASMEQ-------------LTATVRQNT-DNA 322
Query: 264 EEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIA 323
+ +G+ AR+G + +S + DI AE S+ + DI + I
Sbjct: 323 RQATGLAKTASETARKGGRVVDNVVSTMNDI--------------AESSEKIVDITSVID 368
Query: 324 DIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVE 383
IA QTN+LALNAA+EAARAGE GRGFAVVA EVR LA S +AA++I+ + +E
Sbjct: 369 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVL-------IE 421
Query: 384 KAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKK 443
+V + G V ++ + +KE V + +++ DI E+A+ + K
Sbjct: 422 NSVSRIDTGSTQVREAGETMKEIVNAV-----------TRVTDIMGEIASASDE---QSK 467
Query: 444 ALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
+E +A + E + + Q+ AS +EE L D +LR+AV +++
Sbjct: 468 GIEQVAQAVSE-------MDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQ 517
>pir||S72163 methyl-accepting chemotaxis protein mcpA - Rhizobium leguminosarum
bv. viciae plasmid >gi|780656|gb|AAC44311.1| (U23040)
chemoreceptor protein [Rhizobium leguminosarum bv.
viciae]
Length = 639
Score = 129 bits (321), Expect = 7e-29
Identities = 105/441 (23%), Positives = 197/441 (43%), Gaps = 66/441 (14%)
Query: 59 NAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTM-RPINEMAKIAESIAEGKLSRARE 117
+ S +++T LS+G G + + + +PI +M + IA+G L+ E
Sbjct: 180 DVSSVVRDTSVLSLGTAIAALFAVSCFGFLAIRAWLVKPIKQMVTTMKVIADGDLTSTVE 239
Query: 118 ----------MVSKIQYREDDEI--------------------GKLIEGFRAISQDVLQT 147
M +Q +D+E+ +L E R ++D+ +
Sbjct: 240 GTIRRDEIGSMARAVQIFKDNELRARDLGKDAETSRGANEIERARLAETERQRARDMAEA 299
Query: 148 LEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRA 207
+ E + +++G++ L DFE + + ++ L E ++ V + +++ A
Sbjct: 300 TSGLAEGLRHLADGNLVFSLDDKFAEDFEPLRANFNAAVAQLAESLRAVSNATESIDDGA 359
Query: 208 NDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFS 267
+++ + ++S A +++Q + + +N+ A ++RT +A
Sbjct: 360 QEISLSAQDLSRRTEHQAASLEQTAAALDQITQNV----------ASSSKRTAEAR---- 405
Query: 268 GVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAE 327
+ + + + GE S V A+Q + S + I+ I +IA
Sbjct: 406 ---HVAIEANKSARHSGEVVSSAVA-----------AMQRIERSSSRISSIVGVIDEIAF 451
Query: 328 QTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVE 387
QTNLLALNA +EAAR+GE G+GFAVVAQEVR LA+ S AA+ EI++ + +V+
Sbjct: 452 QTNLLALNAGVEAARSGEAGKGFAVVAQEVRELAQRSAHAAK-------EIKDLILNSVD 504
Query: 388 ETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALEN 447
E GVK+V D+ + LK V ++ I LD V + + L V + +
Sbjct: 505 EVSSGVKLVRDTGEALKIIVDQIVLINTQLDAVTAASNEQSATLFEVNRTVNQMDQVTQQ 564
Query: 448 LAASAQETTASAEEVSASAQE 468
AA ++E+TA++ ++ ++
Sbjct: 565 NAAMSEESTAASTALAIEVKQ 585
>pir||E82395 methyl-accepting chemotaxis protein VCA0974 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658413|gb|AAF96870.1| (AE004423) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 561
Score = 129 bits (321), Expect = 7e-29
Identities = 91/340 (26%), Positives = 164/340 (47%), Gaps = 17/340 (5%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
+S ++ + + M K+++GD+S V A D E+ + + + ++ TV L
Sbjct: 230 LSGQIVAPINSLQSVMRKLAQGDLS----VKADADGENEIAKLSQDVNT------TVTQL 279
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
T+E LTRIS E++ A ++A + Q AQ + I ++ +N A
Sbjct: 280 YTTVEQ----LTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNV 335
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
D E +A+ G +++ E + A+ + V + E S+ + ++I
Sbjct: 336 SDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVI 395
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
I +++QTNLLALNAAIEAARAGE GRGFAVVA EVR LA ++ + ++I+ I+ E+Q
Sbjct: 396 EVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQ 455
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHV- 438
+ A + + + ++ + + L+ I E + D+ + A Q HV
Sbjct: 456 TQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVAT-AAEQQSHVT 514
Query: 439 ENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKR 478
++ + + N++ + + SASA + S + E ++
Sbjct: 515 QDINRNVSNMSTLVHQNVTGISQ-SASASNELSHLAEKQK 553
>pir||E83325 probable chemotaxis transducer PA2561 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|8307680|dbj|BAA96488.1|
(AB039332) chemotactic transducer CtpH [Pseudomonas
aeruginosa] >gi|9948621|gb|AAG05949.1|AE004684_4
(AE004684) probable chemotaxis transducer [Pseudomonas
aeruginosa]
Length = 568
Score = 129 bits (320), Expect = 9e-29
Identities = 89/356 (25%), Positives = 163/356 (45%), Gaps = 49/356 (13%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
+++++++ ++ + E + ++S GD + +++ K + + L T+RD
Sbjct: 237 VNRNLVRPVQRLIEHIAQLSHGDFGERIEIRRKDE-----------LGKLALAANTLRDF 285
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ + R TR S ++N +A + + E + + + M+ M+ TA R
Sbjct: 286 LVDIFDRLRRSTRDLDSASGSLNAIASLMAAGTREQFSRTDQVATAMQEMSATAQEVARY 345
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
+ + +E A+ G+D E+ I + +++ + + ++++ S +G ++
Sbjct: 346 AG---DAARAADEADDSAQRGEDVMEETIRSIGEMRKEIDHTVEVIRQLESDSGRIGKVL 402
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
+ I IAEQTNLLALNAAIEAARAG+ GRGFAVVA EVR LA+ + E+ +I I++ +Q
Sbjct: 403 DVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTAESIAEIHQIIDTVQ 462
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
A E G ++ E V
Sbjct: 463 NGAVNAARAIESG-----------------------------------QSRSEAGAEQVA 487
Query: 440 NAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVE 495
NA L + AS + +++ +A+EQ + EE+ RN+ E+ I +E VE
Sbjct: 488 NAGAMLRQITASVESIRDMNRQIATAAEEQTAVAEEISRNLTEIASIASSNQEQVE 543
>pir||B82351 methyl-accepting chemotaxis protein VC0216 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654623|gb|AAF93392.1| (AE004111) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 564
Score = 128 bits (319), Expect = 1e-28
Identities = 90/317 (28%), Positives = 158/317 (49%), Gaps = 19/317 (5%)
Query: 161 GDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEA 220
GD++ +KV ++ + + + + L LM +R A T+E+ A +L + +S+ S
Sbjct: 254 GDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHK 313
Query: 221 INQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREG 280
++ +E + +TE+ A T T A+E N +++A++
Sbjct: 314 MDGHC-------LETDKVVAAVTEMSATAREVASNTYSTAQAIES----ANSQIAVAQK- 361
Query: 281 KDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEA 340
+ AI + ++ + + AV ++++ + + ++ I DIAEQTNLLALNAAIEA
Sbjct: 362 --EVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEA 419
Query: 341 ARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVE----ETEKGVKVV 396
ARAGE GRGFAVVA EVR+LA ++ + ++I +LN + + V KAV+ E+G K
Sbjct: 420 ARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTA 479
Query: 397 DDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETT 456
+SV +KE++ + L+ D+ + + + E + A++ + E+
Sbjct: 480 LESVQ-IKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESF 538
Query: 457 ASAEEVSASAQEQASSM 473
E VSAS M
Sbjct: 539 KQTESVSASLSHSGQQM 555
>emb|CAA70726.1| (Y09534) methyl-accepting chemotaxis proteins [Rhizobium
leguminosarum]
Length = 639
Score = 128 bits (319), Expect = 1e-28
Identities = 105/441 (23%), Positives = 196/441 (43%), Gaps = 66/441 (14%)
Query: 59 NAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTM-RPINEMAKIAESIAEGKLSRARE 117
+ S +++T LS+G G + + + +PI +M + IA G L+ E
Sbjct: 180 DVSSVVRDTSVLSLGTAIAALFAVSCFGFLAIRAWLVKPIKQMVTTMKVIAHGDLTSTVE 239
Query: 118 ----------MVSKIQYREDDEI--------------------GKLIEGFRAISQDVLQT 147
M +Q +D+E+ +L E R ++D+ +
Sbjct: 240 GTIRRDEIGSMARAVQIFKDNELRARDLGKDAETSRGANEIERARLAETERQRARDMAEA 299
Query: 148 LEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRA 207
+ E + +++G++ L DFE + + ++ L E ++ V + +++ A
Sbjct: 300 TSGLAEGLRHLADGNLVFSLDDKFAEDFEPLRANFNAAVAQLAESLRAVSNATESIDDGA 359
Query: 208 NDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFS 267
+++ + ++S A +++Q + + +N+ A ++RT +A
Sbjct: 360 QEISLSAQDLSRRTEHQAASLEQTAAALDQITQNV----------ASSSKRTAEAR---- 405
Query: 268 GVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAE 327
+ + + + GE S V A+Q + S + I+ I +IA
Sbjct: 406 ---HVAIEANKSARHSGEVVSSAVA-----------AMQRIERSSSRISSIVGVIDEIAF 451
Query: 328 QTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVE 387
QTNLLALNA +EAAR+GE G+GFAVVAQEVR LA+ S AA+ EI++ + +V+
Sbjct: 452 QTNLLALNAGVEAARSGEAGKGFAVVAQEVRELAQRSAHAAK-------EIKDLILNSVD 504
Query: 388 ETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALEN 447
E GVK+V D+ + LK V ++ I LD V + + L V + +
Sbjct: 505 EVSSGVKLVRDTGEALKIIVDQIVLINTQLDAVTAASNEQSATLFEVNRTVNQMDQVTQQ 564
Query: 448 LAASAQETTASAEEVSASAQE 468
AA ++E+TA++ ++ ++
Sbjct: 565 NAAMSEESTAASTALAIEVKQ 585
>pir||G82618 pilus biogenesis protein XF1953 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107053|gb|AAF84755.1|AE004014_9
(AE004014) pilus biogenesis protein [Xylella fastidiosa]
Length = 693
Score = 128 bits (318), Expect = 2e-28
Identities = 94/355 (26%), Positives = 171/355 (47%), Gaps = 31/355 (8%)
Query: 146 QTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLES 205
Q + + E + I EGD++ V + +I +++ + LR+L+ T+ + +
Sbjct: 367 QAIMRLLEEIISIGEGDLTVKASVTEEMT-GAIADAINCAVDELRQLVATINTTSAKVAV 425
Query: 206 RANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEE 265
A++ + ++EA A I VS +I ++ +A+V QR+V E
Sbjct: 426 SAHETQTTAMRLAEAAGHQANQITTVSERISEIAASIEQVSRNSAESAEVAQRSVVIAAE 485
Query: 266 FSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADI 325
+GVV E + +G D+ I+D ++ + ++ + E S+ +G I+ I DI
Sbjct: 486 GAGVVRETI----QGMDQ----------IRDQIQETSKRIKRLGESSQEIGSIVELINDI 531
Query: 326 AEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKA 385
+EQTN+LALNAA++AA AGE GRGFA+VA EV+ LAE + A +I ++ IQ +A
Sbjct: 532 SEQTNILALNAAVQAASAGEAGRGFAIVADEVQRLAERTSSATRRIESLVRAIQVDTNEA 591
Query: 386 VEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEH-VENAKKA 444
V E +T +++ L +D + L +I++ ++NT H ++N A
Sbjct: 592 VSSME--------------QTTAEVVSGARLAEDAGTALIEIEH-VSNTLNHLIKNISIA 636
Query: 445 LENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
AA+A + T + + + + + +I L + +LR + K+
Sbjct: 637 AHQQAAAATDITQTMGVIRQITSQTSQGAGKTAESIGRLAGLAAELRRSAANFKL 691
>pir||B83107 chemotactic transducer PctA PA4309 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|1255679|dbj|BAA09307.1|
(D50642) transducer [Pseudomonas aeruginosa]
>gi|9950532|gb|AAG07697.1|AE004847_4 (AE004847)
chemotactic transducer PctA [Pseudomonas aeruginosa]
Length = 629
Score = 127 bits (317), Expect = 2e-28
Identities = 99/365 (27%), Positives = 169/365 (46%), Gaps = 44/365 (12%)
Query: 144 VLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV----- 196
++Q L ++ M+ I+ EGD++ L V ++ +F + ++ + + + ++ V
Sbjct: 300 LMQPLHLMGRAMQDIAQGEGDLTKRLAVTSRDEFGVLGDAFNQFVERIHRSIREVAGTAH 359
Query: 197 --RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
D++ + + +N S E S N VA AI ++ AQ N AD
Sbjct: 360 KLHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARN----------AAD 409
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
+ DA + A +GK E+ I + ++ + + ++ + + N
Sbjct: 410 ASHHASDANHQ-----------AEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVN 458
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G I+ I I+EQTNLLALNAAIEAARAGE GRGFAVVA EVRNLA ++E+A++I+ +
Sbjct: 459 IGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 518
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANT 434
+ E+Q +A V + +S + E+V GE L V ++ +I
Sbjct: 519 IEELQVGAREA-------VATMTESQRYSLESVEIANRAGESLSSVTRRIGEIDG----- 566
Query: 435 QEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAV 494
++ A E A E++ QE +++ R EL +LR+ V
Sbjct: 567 --MNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLV 624
Query: 495 EFIKV 499
+ K+
Sbjct: 625 DSFKI 629
>dbj|BAA23412.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 629
Score = 127 bits (317), Expect = 2e-28
Identities = 101/367 (27%), Positives = 171/367 (46%), Gaps = 48/367 (13%)
Query: 144 VLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV----- 196
++Q L ++ M+ I+ EGD++ L V ++ +F + ++ + + + ++ V
Sbjct: 300 LMQPLHLMGRAMQDIAQGEGDLTKRLAVTSRDEFGVLGDAFNQFVERIHRSIREVAGTAH 359
Query: 197 --RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
D++ + + +N S E S N VA AI ++ AQ N AD
Sbjct: 360 KLHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARN----------AAD 409
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
+ DA + A +GK E+ I + ++ + + ++ + + N
Sbjct: 410 ASHHASDANHQ-----------AEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVN 458
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G I+ I I+EQTNLLALNAAIEAARAGE GRGFAVVA EVRNLA ++E+A++I+ +
Sbjct: 459 IGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 518
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDI--KNELA 432
+ E+Q +A V + +S + E+V GE L V ++ +I N++
Sbjct: 519 IEELQVGAREA-------VATMTESQRYSLESVEIANRAGESLSSVTRRIGEIDGMNQVL 571
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
T A E A E++ QE +++ R EL +LR+
Sbjct: 572 AT---------ATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQ 622
Query: 493 AVEFIKV 499
V+ K+
Sbjct: 623 LVDSFKI 629
>pir||H82143 methyl-accepting chemotaxis protein VC1898 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656431|gb|AAF95046.1| (AE004265) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 672
Score = 127 bits (317), Expect = 2e-28
Identities = 91/364 (25%), Positives = 176/364 (48%), Gaps = 36/364 (9%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
I+ V + + I + +E +++G+++ +++ +F + + NL D+
Sbjct: 341 IAHSVREPVTRILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLH-------DI 393
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ L S ++DLT +S NQ Q + +QR+Q + + M A Q
Sbjct: 394 LVKLNSASDDLTATAST-----NQTTSLSAQNKLNSQREQTS--SVAAAMTEMAHSVQEV 446
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
++ + +V +V + + G+ IS + ++ + +AV ++ +MS +G I+
Sbjct: 447 ANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSIL 506
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
+ I +IAEQTNLLALNAAIEAARAGE GRGFAVVA EVR LA+ + ++ +I +++ +Q
Sbjct: 507 DVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQ 566
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
A KV++ + ++ +V + ++++++ + E+++ H+
Sbjct: 567 SSSSLA-------SKVIESCMQDMELSVEQASHANSAMEEIQALI----IEISHMSTHIS 615
Query: 440 NAKKALENLAASAQETTA----SAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVE 495
A A ETT S E+++ + E +M ++ + L + + E V
Sbjct: 616 QA-------AGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVH 668
Query: 496 FIKV 499
K+
Sbjct: 669 RFKL 672
>pir||F83280 probable chemotaxis transducer PA2920 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949014|gb|AAG06308.1|AE004718_5 (AE004718) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 545
Score = 127 bits (317), Expect = 2e-28
Identities = 95/349 (27%), Positives = 169/349 (48%), Gaps = 27/349 (7%)
Query: 144 VLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLAL 201
V + L+ + +R+E+I+ +GD+ L+V ++ + + ++ + L+ L++ V +
Sbjct: 216 VTRPLQRLLQRLEEIANGDGDLRVRLEVTSRDEPGRLGSAFNAFLDKLQPLIREVGRVTG 275
Query: 202 TLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVD 261
+ A L +++ IN ++ QVS A + + E+ A V D
Sbjct: 276 EVADSAGSLAGMTAANDRLINSEHASVDQVSTAATQMSSAVHEVARNAQSAAQVAD---D 332
Query: 262 AMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINA 321
A + AREG + E I + + ++ +++Q++A+ + ++ ++
Sbjct: 333 ARRQ-----------AREGANVVEATIEVIRQLAQEVESSSESIQQLAQETASIDAVLTV 381
Query: 322 IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEK 381
I IAEQTNLLALNAAIEAARAGE GRGFAVVA EVR LA ++++ + I+ + +Q
Sbjct: 382 IKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTKDIQARIERLQAG 441
Query: 382 VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENA 441
V+ AV + G DSV+ G L G D ++ D+ ++A+ E
Sbjct: 442 VQNAVRAMQSGSLKARDSVERAAGVDGVLAATG----DAVGRINDLAAQIASA---CEEQ 494
Query: 442 KKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKL 490
+ ++ +A + E E+SA A E + R + EL + +L
Sbjct: 495 SRVIDEIARNISE----VRELSAQAAEHSEQGTGASRRLSELSSELARL 539
>pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655731|gb|AAF94407.1| (AE004204) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 536
Score = 127 bits (317), Expect = 2e-28
Identities = 91/364 (25%), Positives = 173/364 (47%), Gaps = 55/364 (15%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
IS+ V+Q L+ I + M+K+++GD++ + V K + + + +I+ + + +
Sbjct: 205 ISRAVIQPLDTIKDVMKKVAQGDLTAQIPVLGKDELGIVAQRINNSIAAVHDAL------ 258
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
+ES + +S ++EA ++A + ++ S Q++ ++++ MN +T
Sbjct: 259 ---VES-----VQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMN---QMTATV 307
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNV---G 316
D + L ++E + S V+ I+ + A +V ++ + V
Sbjct: 308 ADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQIS 367
Query: 317 DIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILN 376
++ + I+ I+EQTNLLALNAAIEAARAG+ GRGFAVVA EVRNLA + + ++I+ ++N
Sbjct: 368 EVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMIN 427
Query: 377 EIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQE 436
+Q +L S +Q + AN+
Sbjct: 428 RLQ-----------------------------------QLAVSTASAMQKSQALAANSVA 452
Query: 437 HVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEF 496
ENA L + Q + A +++ +A+EQ++ EE+ RN+ + D ++ +A +
Sbjct: 453 TAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATY 512
Query: 497 IKVE 500
+ E
Sbjct: 513 LAEE 516
>pir||E82273 accessory colonization factor AcfB VC0840 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655292|gb|AAF94003.1| (AE004169) accessory
colonization factor AcfB [Vibrio cholerae]
Length = 626
Score = 127 bits (316), Expect = 3e-28
Identities = 93/337 (27%), Positives = 169/337 (49%), Gaps = 28/337 (8%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGD--FESILNSMRKTISNLRELMKTVRDLAL 201
+L+ L +T+ M IS G +++ D F I+NS + NL+ ++ V+
Sbjct: 297 MLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVK---- 352
Query: 202 TLESRANDLTRISSEISEAINQ-VAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTV 260
+ N +T + E+ E N VA+ +++ + A ++ E++ N A +T
Sbjct: 353 MNSEKINCITTETQELVEVCNNSVADQYRELDMLAS----SMNEMVATSNQIAQITSEAS 408
Query: 261 DAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIIN 320
+ + +G VNE G V ++ + + + +Q++ ++N+ I+
Sbjct: 409 EITSKINGQVNE-------GVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILK 461
Query: 321 AIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQE 380
AI DIA+QTNLLALNAAIEAARAGE GRGFAVVA EVR+LA +++E+ + I I++ +Q
Sbjct: 462 AINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQ- 520
Query: 381 KVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVES---KLQDIKNELANTQEH 437
E + V V+D+S + ET+ + + LD++ ++ DI N++A
Sbjct: 521 ------ENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYE 574
Query: 438 VENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
+ + + + + S ++ + + +QA S +
Sbjct: 575 QSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQK 611
>gb|AAA21387.1| (L25660) accessory colonization factor [Vibrio cholerae]
Length = 626
Score = 126 bits (314), Expect = 4e-28
Identities = 89/336 (26%), Positives = 163/336 (48%), Gaps = 26/336 (7%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGD--FESILNSMRKTISNLRELMKTVRDLAL 201
+L+ L +T+ M IS G +++ D F I+NS + NL+ ++ V+
Sbjct: 297 MLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVK---- 352
Query: 202 TLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVD 261
+ + I++E E + ++ E ++ E++ N A +T +
Sbjct: 353 ---MNSEKINCITTETQELVEVCNNSVMDQYRELDMLASSMNEMVATSNQIAQITSEASE 409
Query: 262 AMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINA 321
+ +G VNE G V ++ + + + +Q++ ++N+ I+ A
Sbjct: 410 ITSKINGQVNE-------GVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKA 462
Query: 322 IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEK 381
I DIA+QTNLLALNAAIEAARAGE GRGFAVVA EVR+LA +++E+ + I I++ +Q
Sbjct: 463 INDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQ-- 520
Query: 382 VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVES---KLQDIKNELANTQEHV 438
E + V V+D+S + ET+ + + LD++ ++ DI N++A
Sbjct: 521 -----ENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQ 575
Query: 439 ENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
+ + + + + S ++ + + +QA S +
Sbjct: 576 SHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQK 611
>gb|AAA82705.1| (U39068) AcfB [Vibrio cholerae]
Length = 480
Score = 126 bits (314), Expect = 4e-28
Identities = 89/336 (26%), Positives = 163/336 (48%), Gaps = 26/336 (7%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGD--FESILNSMRKTISNLRELMKTVRDLAL 201
+L+ L +T+ M IS G +++ D F I+NS + NL+ ++ V+
Sbjct: 151 MLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVK---- 206
Query: 202 TLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVD 261
+ + I++E E + ++ E ++ E++ N A +T +
Sbjct: 207 ---MNSEKINCITTETQELVEVCNNSVMDQYRELDMLASSMNEMVATSNQIAQITSEASE 263
Query: 262 AMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINA 321
+ +G VNE G V ++ + + + +Q++ ++N+ I+ A
Sbjct: 264 ITSKINGQVNE-------GVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKA 316
Query: 322 IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEK 381
I DIA+QTNLLALNAAIEAARAGE GRGFAVVA EVR+LA +++E+ + I I++ +Q
Sbjct: 317 INDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQ-- 374
Query: 382 VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVES---KLQDIKNELANTQEHV 438
E + V V+D+S + ET+ + + LD++ ++ DI N++A
Sbjct: 375 -----ENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQ 429
Query: 439 ENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
+ + + + + S ++ + + +QA S +
Sbjct: 430 SHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQK 465
>pir||F82342 methyl-accepting chemotaxis protein VC0282 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654693|gb|AAF93457.1| (AE004116) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 556
Score = 126 bits (314), Expect = 4e-28
Identities = 86/346 (24%), Positives = 169/346 (47%), Gaps = 22/346 (6%)
Query: 138 RAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVR 197
R+I+Q +TL + + EGD++ L V K + I + + +R +++ +
Sbjct: 225 RSITQPCEETLATLKNIAQ--GEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEIT 282
Query: 198 DLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQ 257
+ ++ A++LT+++ Q S +A Q + + + MN Q
Sbjct: 283 PITESVTGSADELTQVA--------------QSASSKAYDQHQAVDTVASAMNQLHASNQ 328
Query: 258 RTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGD 317
+ + + A +G++ +Q++ ++D + Q Q +A +++V
Sbjct: 329 EVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSA 388
Query: 318 IINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNE 377
++ I +AEQTNLLALNAAIEAARAGE GRGFAVVA EVR LA ++ + +I I+ +
Sbjct: 389 VLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQ 448
Query: 378 IQEK---VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANT 434
+Q+K V +++ +T++ +V + ++ L I + + S Q I A
Sbjct: 449 LQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQ---MLNEIEAQIKTILSFNQHIAGASAQQ 505
Query: 435 QEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNI 480
E + + L +A + + +A A +V+A++++ + + + R++
Sbjct: 506 SEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSL 551
>gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis protein McpT [Sinorhizobium
meliloti]
Length = 652
Score = 126 bits (313), Expect = 6e-28
Identities = 104/397 (26%), Positives = 179/397 (44%), Gaps = 52/397 (13%)
Query: 98 NEMAKIAESIAEGKLSRAREMVSKIQYREDDE---IGKLIEGFRAISQDVLQTLEIITER 154
+ +A + + A G +R +SK Y DD + E ++ + +T +I
Sbjct: 264 SSIATVVAAAAAGDFTRR---ISK-DYDNDDLNRFAASVNELVNSVDTGIAETRRVIAS- 318
Query: 155 MEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRIS 214
++ GD++ +K +G F + ++ T+ L++ ++ VR ++ + +L +
Sbjct: 319 ---LATGDLTQSMKGQFQGAFAELQTNVNDTLQTLQKTLREVRMTTDSINGNSTELRSAA 375
Query: 215 SEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVL 274
++S+ Q A A+++ S ITA V T A E
Sbjct: 376 DDLSKRTEQQAAALEETSAALDE-------------ITAAVRNSTERAQE--------AT 414
Query: 275 SIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLAL 334
+ E KD ++ S V + DAM I QA S +G I N I +IA QTNLLAL
Sbjct: 415 VMVTEAKDSAAESASVVRNAIDAMGRIEQA-------SSEIGQITNVIDEIAFQTNLLAL 467
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVK 394
NA +EAARAG+ G+GFAVVAQEVR LA+ + AA+ I+ + + K+ E GVK
Sbjct: 468 NAGVEAARAGDAGKGFAVVAQEVRELAQRAASAAKDIKSL-------ISKSGGEVATGVK 520
Query: 395 VVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQE 454
+V + L + ++ I + + + + ++ L V + + AA +E
Sbjct: 521 LVQATGAALGQIETRVLKINDHIHSIATAAREQSTGLGEVSTAVNQMDQVTQRNAAMVEE 580
Query: 455 TTASAEEVSASAQEQASSM------EEVKRNIIELRD 485
A+ ++SA A A+ + E R ++ +D
Sbjct: 581 ANAATHKLSAEADNLANLIAYFKVEREAVRTVVPAKD 617
>pir||G83313 probable chemotaxis transducer PA2652 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948722|gb|AAG06040.1|AE004694_3 (AE004694) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 561
Score = 125 bits (312), Expect = 8e-28
Identities = 109/444 (24%), Positives = 198/444 (44%), Gaps = 88/444 (19%)
Query: 37 LEKTMKVVQTGGSVEAIRETLENAKSQLKE---TLWLSI-GVMSIVAVISGALGMRLMNS 92
L K V+ + +++ + L K + E TL SI G+ ++ V+ +G+ + N+
Sbjct: 172 LPKWDMVIGSAINLDGVEAQLVEIKQDIDERIGTLIASIVGIAGVLLVVLLVIGLAVANA 231
Query: 93 TMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIIT 152
+RP++++ + + IA G+ ++ ++ DE+G+L F + + + I
Sbjct: 232 MLRPLHQIRQNLDDIAAGE----GDLTRRLPVTSYDELGELAGSFNRFVEKIHGLVRQI- 286
Query: 153 ERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTR 212
GD + ++ M + M+ R + + N+++
Sbjct: 287 ----------------AGMTGDLKQLVEQMSAQAERSEQAMERQRHETDQVATAINEMSA 330
Query: 213 ISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNE 272
+ E++++ + AEA QQ E Q +R VD G +
Sbjct: 331 AAHEVAQSAQRAAEAAQQTDHEGQ------------------AAKRVVD------GSIER 366
Query: 273 VLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLL 332
+ ++ E +D G S +D+Q ++ ++ I IAEQTNLL
Sbjct: 367 IHALVDEIRDSGTSLDSLQQDVQ------------------SIVSVLGVIRSIAEQTNLL 408
Query: 333 ALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKG 392
ALNAAIEAARAGE GRGFAVVA EVR LA ++++ ++I+G+++ +Q+ AV+ +
Sbjct: 409 ALNAAIEAARAGEAGRGFAVVADEVRALASRTQQSTQEIQGMIDRLQQGTNAAVDAMRR- 467
Query: 393 VKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASA 452
S + + T G+ LD + + I NA A +A++A
Sbjct: 468 ------SGEAGEGTSNQANQAGDSLDAIAQLIATI------------NAMNA--QIASAA 507
Query: 453 QETTASAEEVSASAQEQASSMEEV 476
+E TA AEE++ S + A +++ V
Sbjct: 508 EEQTAVAEEINRSVHQIAGAVDSV 531
>sp|P55652|Y4SI_RHISN PROBABLE CHEMORECEPTOR Y4SI (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|2182623|gb|AAB91848.1| (AE000096) Y4sI [Rhizobium
sp. NGR234]
Length = 756
Score = 125 bits (311), Expect = 1e-27
Identities = 108/431 (25%), Positives = 207/431 (47%), Gaps = 54/431 (12%)
Query: 72 IGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIG 131
IG+ + A+++ A+ + S P+ + I + +A G ++ V+ + R DE+G
Sbjct: 334 IGITAATAILALAMAILASRSISGPLAGLVSIMKRLANGDIN---VRVAGVDRR--DEMG 388
Query: 132 KLIEGF---------RAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSM 182
++ R ++D ++ E E ++ E + S+ L A+ M
Sbjct: 389 EMSRAVLVFRDNAIARVAAEDDARSAEEAMEHDRRMMEMERSERLDEQAR--------VM 440
Query: 183 RKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENI 242
+ L L V +T++ + + S+ + A+ Q+ E I+ V+ +A +
Sbjct: 441 AQIGGGLAALSDGVFSRPITVDF-PEEYRPLKSDFNRALGQLRETIRTVAAQAASMSSIV 499
Query: 243 TEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGK---DKGEKAISQVEDIQDAM- 298
+EI ++ A T+ ++ G VN + +I+ + + A + V D A
Sbjct: 500 SEISCATDVLAKRTEHQAIVLD---GAVNTMDAISNDVSVTANAANNADALVRDAHSAAA 556
Query: 299 ---KVIRQAVQ---EVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAV 352
+++ A+ E+ E S + I++ I +IA QTNLLALNA +EA+RAGE G+GFAV
Sbjct: 557 ASDEIVSSAIAGMLEIEESSAKIATIVSVIEEIAHQTNLLALNAGVEASRAGEAGKGFAV 616
Query: 353 VAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMN 412
VA EVR LA+ S +AA++I+ ++N ++V E+G ++VD + + LK +
Sbjct: 617 VASEVRALAQRSSDAAKEIKDLINVSTQRV-------ERGKELVDSASELLK-------H 662
Query: 413 IGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASS 472
I +D + + + +I + +H+ + + + S Q+T A AEE A+ + S
Sbjct: 663 IAARVDLIRTTVSNIAATATSQAKHLSEFQTTIAEIDQSTQQTAAMAEESDAACR----S 718
Query: 473 MEEVKRNIIEL 483
+ ++++EL
Sbjct: 719 LNAEAQHLLEL 729
>pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655901|gb|AAF94562.1| (AE004219) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 595
Score = 125 bits (311), Expect = 1e-27
Identities = 92/344 (26%), Positives = 156/344 (44%), Gaps = 22/344 (6%)
Query: 133 LIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLREL 192
LI GF A S+ ++ + + +++EG+ S KV + ++ SM +L +
Sbjct: 257 LILGF-AFSKQIVMAIARARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHI 315
Query: 193 MKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNIT 252
+ V D A T+ S + Q+A + + Q+QQ N ++ M
Sbjct: 316 VGEVIDRANTIAS--------------TVTQLASSAESNKKSVQQQQANTEQVTSAMAQM 361
Query: 253 ADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMS 312
A + EE S AR D K + + + +Q + E+ +
Sbjct: 362 AITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEAST 421
Query: 313 KNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIR 372
+ + + + I+EQTNLLALNAAIEAARAGE GRGFAVVA EVR LA S++A +I+
Sbjct: 422 RQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIK 481
Query: 373 GILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
G+ ++ VE + K++D S ++E+ + + LD + L ++ +
Sbjct: 482 GL-------IQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANT 534
Query: 433 NTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEV 476
E A + ++ + + + E + SAQE A + EE+
Sbjct: 535 QVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEEL 578
>pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656398|gb|AAF95016.1| (AE004262) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 626
Score = 125 bits (311), Expect = 1e-27
Identities = 98/371 (26%), Positives = 180/371 (48%), Gaps = 51/371 (13%)
Query: 137 FRAISQDVLQTLEIITERMEKISEGDVSDDLKV--HAKGDFESILNSMRKTISNLRELMK 194
F +S + + L I +EK+S GD+S L + + K +F + ++ K+ NL L+
Sbjct: 290 FMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVH 349
Query: 195 TVRDLALTLESRA-------NDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIME 247
V+D ++ L A ++L R S++ + ++A A ++VS+ Q ++
Sbjct: 350 VVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQ-------QVSH 402
Query: 248 GMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQE 307
+ + A+V++ + A E S V++ + RE + A S ++ ++ A
Sbjct: 403 SLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQA---------- 452
Query: 308 VAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEA 367
S V +++ I IAEQTNLLALNAAIEAARAGE GRGFAVVA EVR+LA + A
Sbjct: 453 ----SAKVDSVMDIINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVRTVNA 508
Query: 368 AEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDI 427
+I G + + K E A E + ++ + +++ +SK
Sbjct: 509 VSEISGTIETM--KKESA-------------------EVILFMNQSEQTMEEGQSKGNQA 547
Query: 428 KNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIV 487
L + + A E + +S +E +A+++ ++ S + +S+M+ ++ +LR
Sbjct: 548 MQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTS 607
Query: 488 KKLREAVEFIK 498
+++ E ++
Sbjct: 608 REVETRAESLE 618
>gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 715
Score = 124 bits (308), Expect = 2e-27
Identities = 125/482 (25%), Positives = 221/482 (44%), Gaps = 82/482 (17%)
Query: 30 ISDLYDNLEKTMKVVQT--GGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGM 87
IS + +L+ T+ Q GSV+A T+ +A S TL +S G++ ++ ++
Sbjct: 266 ISGGFKDLQATVTGAQKTLDGSVDA---TVASATST---TLIIS-GLLIVIGLVLSYFVG 318
Query: 88 RLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYRED-----------DEIG--KLI 134
RL++S +R MA+ E +A G+ R +++ +++R + E G KLI
Sbjct: 319 RLISSAVR---NMAQSMEQLARGE---ERIVITGVEHRHELGAMARSLKVFQETGRAKLI 372
Query: 135 EGFRAISQDVLQTLEIITERMEKISEGDVSDD--------LKVHAKGD-----------F 175
A + E + + E++S+ V + L +KGD +
Sbjct: 373 AEANAERARLAAEEERLRQEAERLSDAQVMEHAFRQISVGLDALSKGDLTVRVGEVDHRY 432
Query: 176 ESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEA 235
I + ++++L E + V T+ S +EIS A N +A +Q +
Sbjct: 433 VRIRDHFNNSVASLEEAVDAVIRAVGTIRSGL-------AEISTASNDLARRTEQQAASL 485
Query: 236 QRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQ 295
+ + E+ G+N TA+ R V++ AR +KG + +++ D
Sbjct: 486 EETVAALGEVTRGVNGTAEGASRA-----------QGVVATARTNAEKGGEIVARAID-- 532
Query: 296 DAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 355
A+ E+ S +G+II+ I +IA QTNLLALNA +EAARAGE G+GFAVVAQ
Sbjct: 533 --------AMTEIQNSSSKIGNIISVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQ 584
Query: 356 EVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGE 415
EVR LA+ S AA EI++ + + + + GV++V +S L++ V + +
Sbjct: 585 EVRELAQRSANAA-------REIKQLISTSSAQVKTGVQLVGESGLSLEQIVEQVTAMNA 637
Query: 416 LLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEE 475
+ ++ ++ L + K + AA +ETTA+A+ ++ + A +
Sbjct: 638 TVAEIAVAAREQATSLREVSAAGDQMDKVTQQNAAMVEETTAAAQSLTHETESLAELLRR 697
Query: 476 VK 477
+
Sbjct: 698 FR 699
>pir||JC4736 methyl-accepting chemotaxis protein B - Rhodobacter capsulatus
>gi|1066851|gb|AAB05215.1| (L48927) putative
[Rhodobacter capsulatus]
Length = 764
Score = 123 bits (307), Expect = 3e-27
Identities = 133/518 (25%), Positives = 222/518 (42%), Gaps = 89/518 (17%)
Query: 29 AISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMR 88
A D YD + + ++ G + + + T ++++ L +++ I ++ GA +R
Sbjct: 231 ACDDSYDAMPLALAALRDGLAADVQQMTAATDAAKMRGYLLMALAG-GIGMLVLGASAVR 289
Query: 89 LMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFR---------- 138
L +T+ P+ + + +AEG R V + + E IG +E FR
Sbjct: 290 LFRATVTPLRAVTTAVQELAEG---RTDITVPETRVAEVRSIGAALESFRTTILERQRLE 346
Query: 139 ----------------AISQDVLQTLE------------IITERMEKISEGDVSDDLKVH 170
A +Q+ + E + E + +++ +
Sbjct: 347 AESAAAAEREAEARIAAAAQERAEMAERARLAEEDRAAAAAAQAREHAAAQEIAAVVAAC 406
Query: 171 AKGDFESILNSMRKT--ISNLRELMKTVRDLA--------LTLESRAN-DLTR------- 212
A+GDF L + KT ++L M + + A + LE A DLT
Sbjct: 407 AEGDFSRRLRTDDKTGIFADLCAGMNRIGEAADDGLTAVRVALERLAERDLTHRMPTRFH 466
Query: 213 -ISSEISEAINQVAEAIQ----QVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFS 267
+ EI+E +N+ E++ +SV A + EI + A ++R +E+ +
Sbjct: 467 GVFGEIAETMNRTTESLTGTLGDISVSATAVDTSAREIAGAGDDLARRSERNAAMLEQTA 526
Query: 268 GVVNEVLSIAREGKDKGEKAISQVEDIQDAM----KVIRQAVQ---EVAEMSKNVGDIIN 320
+ ++ + R + + A S V +I +V+ +AV E+ S+ +G I+
Sbjct: 527 SALEQMSATVRSAANSAQTARSAVTEISTRAGAGHQVVSRAVSAMDEIKASSEAIGRILQ 586
Query: 321 AIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQE 380
I DIA QTNLLALNA +EAARAG+ RGFAVVA EVR LA+ S EAA EI
Sbjct: 587 VIDDIAFQTNLLALNAGVEAARAGDAVRGFAVVASEVRALAQRSSEAAR-------EIAR 639
Query: 381 KVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVEN 440
+E A +GV +V DS L+E V ++DV K+ +I T +
Sbjct: 640 LIETASNNVNQGVGLVHDSGQALREIVAG-------VEDVAQKIAEIVTASQETATGITE 692
Query: 441 AKKALENLAASAQETTASAEEVSA---SAQEQASSMEE 475
A L + Q+ A EE +A S Q +A+++ E
Sbjct: 693 ISNATTELDRTTQQNAAVFEETNAAVRSLQGEATALAE 730
>gi|10955066 mclA [Agrobacterium tumefaciens] >gi|8572698|gb|AAF77144.1|
(AF242881) mclA [Agrobacterium tumefaciens]
Length = 739
Score = 122 bits (303), Expect = 9e-27
Identities = 100/409 (24%), Positives = 185/409 (44%), Gaps = 34/409 (8%)
Query: 75 MSIVAVISGAL-----GMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDE 129
+SI+A+I G G+ L + RPI E+ IA+G L S + DE
Sbjct: 324 ISIIAIIFGVAFSVIGGIALTLTLQRPIGEITAAMRRIADGALD-----TSISSQKRSDE 378
Query: 130 IGKLIEGFRAISQDVLQTLEIITERMEKISEGDV----SDDLKVHAKGDFESILNSMRKT 185
IG + ++ + + I + E+ D +D K E +N +
Sbjct: 379 IGDMARALGIFKENAISKIRIEEQSEEERRAADQERQRNDAEKHELDRQIEFAVNELAGG 438
Query: 186 ISNLRELMKTVRDLALTLESR-ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITE 244
+ + D++ T+++ L ++ + + ++ ++ ++ + + Q N +E
Sbjct: 439 LGRMAR-----GDISSTIDTPFIGRLEQLREDFNRSMLRLQATMRDIRNNVEMIQSNGSE 493
Query: 245 IMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKA---ISQVEDIQDAMKVI 301
+ + A T++ ++EE + V+++ R ++ + + Q + D V+
Sbjct: 494 MAQSAGDLAKRTEQQAASLEETAAAVDQITVTVRSSAERAKDVALIVRQAKVSADESAVV 553
Query: 302 ----RQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEV 357
A+ + + S+++ II I +IA QTNLLALNA IEAARAGE G+GFAVVA EV
Sbjct: 554 VTNATDAMSRIEDASRHIEQIIGVIDEIAFQTNLLALNAGIEAARAGESGKGFAVVAMEV 613
Query: 358 RNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELL 417
R LA+ S AA +I+G++N K+ E G +V ++ L ++ I + +
Sbjct: 614 RELAQRSAAAAGEIKGLIN-------KSTSEVTTGSLLVQEAGKALANISSQIVVISQHV 666
Query: 418 DDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASA 466
+ + D + L + + AA +ETTA++ ++A A
Sbjct: 667 EMIARASHDQSSALQEVNSTITQIDQMTHQNAAMVEETTAASMALAAEA 715
>pir||D82386 methyl-accepting chemotaxis protein VCA1034 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658478|gb|AAF96929.1| (AE004429) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 666
Score = 122 bits (303), Expect = 9e-27
Identities = 110/410 (26%), Positives = 188/410 (45%), Gaps = 28/410 (6%)
Query: 92 STMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEII 151
S++ +++MAK A SIA+ A VS + I AIS V +
Sbjct: 283 SSLAKLDDMAKYAGSIAQQSRMLADAAVSSANF--------WIMAVSAISAAVALVIGYT 334
Query: 152 TERMEKISEGDVSDDLKVHAKGDFESILN-SMRKTISNLRELMKTVRDLALTLESRANDL 210
T R + ++ +L A+GD +N R L + + D L S+ N
Sbjct: 335 TARSIQKPLQKINHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAG 394
Query: 211 TR-ISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGV 269
+R + +E S + A+ +V E + Q + + + + ++A R+ D ++
Sbjct: 395 SRHLVNEASRSAEISERAMARVQ-EQKSQTDQVAAAITELEVSATEVARSTDGAKD---E 450
Query: 270 VNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQT 329
V+ + A++G+ K E + M+ ++ E S N+G I++ I IAEQT
Sbjct: 451 VDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQT 510
Query: 330 NLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEET 389
NLLALNAAIEAARAG+ GRGFAVVA EVR LA ++ + E+I+ ++ +QE ++ VE
Sbjct: 511 NLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVM 570
Query: 390 EKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLA 449
+ + V+ +E L +I + + ++ + + QE + ++ ++
Sbjct: 571 GRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHA---AQEQIVVSQSVAHHVT 627
Query: 450 ASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
A+ A E A+E ASS E L D+ K ++ + KV
Sbjct: 628 GIAE----VAHETEREARESASSSE-------VLADLAAKQQQLIAHFKV 666
>gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis protein McpX [Sinorhizobium
meliloti]
Length = 788
Score = 122 bits (302), Expect = 1e-26
Identities = 100/411 (24%), Positives = 193/411 (46%), Gaps = 23/411 (5%)
Query: 66 ETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYR 125
+T + +G + ++ + L + +P+ E+++ G+ +R + + +
Sbjct: 316 QTYMMIVGGLVVLGAVLAGLYFAVRRFVQKPLAGRVGDVETLSNGEYTRP--ISGQERSD 373
Query: 126 EDDEIGKLIEGFR-AISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRK 184
E + + +EGFR ++ + E ER + E S++ + A I+ + K
Sbjct: 374 ETGAVARSLEGFRHQLADNRRLESEARHEREQAELERGRSENERTEASALQRDIVARLGK 433
Query: 185 TISNLRELMKTVRDLALTLESR-ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENIT 243
+S+L + DLA L + ++ + + + + E I+ V+ +
Sbjct: 434 ALSHL-----SAGDLAFRLTGDFPGEYAQLKRDFNATMESLEETIRTVNHSVVNIGSGTS 488
Query: 244 EIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVE----DIQDAMK 299
EI N + T++ ++EE + ++E+ S + + A VE D + + +
Sbjct: 489 EISGAANDLSHRTEQQAASLEETAAALDELTSQVNASAENAKVAAKSVEVASSDAEQSGE 548
Query: 300 VIRQAV---QEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQE 356
V+++A+ Q + + S V II I +IA QTNLLALNA +EAARAG+ G+GFAVVAQE
Sbjct: 549 VVQKAIAAMQGIEQSSHEVSRIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQE 608
Query: 357 VRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGEL 416
VR LA+ S AA++I+ ++N + + +GV +V + L++ ++ I L
Sbjct: 609 VRELAQRSANAAKEIKTLIN-------TSAGQVREGVDLVGKAGGALEKIAEQVVQINGL 661
Query: 417 LDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQ 467
+ + S + L V + + AA +ETTA++ ++ A+
Sbjct: 662 IRQISSSASEQAVGLKEINSAVNQMDQVTQQNAAMVEETTAASMALNDEAR 712
>pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog - Lyme disease
spirochete >gi|2688522|gb|AAC66955.1| (AE001161)
methyl-accepting chemotaxis protein (mcp-2) [Borrelia
burgdorferi]
Length = 715
Score = 121 bits (301), Expect = 1e-26
Identities = 88/372 (23%), Positives = 176/372 (46%), Gaps = 21/372 (5%)
Query: 144 VLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTL 203
++ ++ + + K+ GD++ ++ K S +N I NL+ ++ ++++ L
Sbjct: 331 IISKIDKLNVVIPKVKNGDLTFKIESKGKDSISSTINLFGHFIENLKNVINSLQERVKLL 390
Query: 204 ESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQE---NITEIMEGMNITADVTQRTV 260
+ + L ++ I + I++ E ++Q E N T I+E ++ ++
Sbjct: 391 KENGDHLFSEINKTHNTIKNSNQYIEKTQEEVEKQVEFISNTTNIIESLSKNISSLDNSI 450
Query: 261 D----AMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQ----DAMKVIRQAVQEVAEMS 312
+ ++E+ S + E++ + + +KA E+++ D K + + ++ E+
Sbjct: 451 ETQAASVEQSSSAIEEMIGGIQSITEITQKAAKSTEELKRFSDDGRKKQEEVITQIKEIF 510
Query: 313 KNVGDIINA---IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
KN + A I+ IA QTNLL++NAAIEA+ AGE G+GFA+VA+E+++LAE+ +E
Sbjct: 511 KNSTRLQEANSLISSIASQTNLLSMNAAIEASHAGEAGKGFAIVAEEIKDLAEQVTSQSE 570
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKN 429
+ +NEI + + K V +E K + D + V + I + + Q+I
Sbjct: 571 SVASSINEIMDSITKTVNTSELTNKAFNQIFDSINLVVQVIEEINHTMQEQSIGSQEILK 630
Query: 430 ELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKK 489
L +E K ++ +E ++ + + ++SM+ +K I
Sbjct: 631 ALNTMREITYEVKIGSNDMFRGNKEIISTIKLLGEINITVSNSMKGLKEEI-------NT 683
Query: 490 LREAVEFIKVEG 501
L EA+E IKV G
Sbjct: 684 LVEAIERIKVLG 695
>sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|1435129|emb|CAA64840.1|
(X95588) halobacterial transducer protein III
[Halobacterium salinarum]
Length = 481
Score = 121 bits (300), Expect = 2e-26
Identities = 83/338 (24%), Positives = 166/338 (48%), Gaps = 16/338 (4%)
Query: 161 GDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEI--- 217
G++ D L + G F++ ++ + E ++ R+L ++ A +T + +++
Sbjct: 153 GELVDTLDAYDAGRFDATVDIAAEDTLLDDEYIQIGRNLTEFGDTLAAHITEVHNDVERL 212
Query: 218 ---SEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVL 274
S+A+++ + I ++S + +E ++ T T D + + S
Sbjct: 213 EAASQAVSESSAEIDELSTAQSTNVSTVATEVETLSATVQEIASTADEVVDTSATAER-- 270
Query: 275 SIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLAL 334
+A +G A + D+ A + V+ + +++ ++++ I IAEQTN+LAL
Sbjct: 271 -LADDGSAAASDAADMMADVATAADSVTSDVEALQNRIEDIDEVVDVITGIAEQTNMLAL 329
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVK 394
NA+IEAARAGE+G GFAVVA+EV+ LAE+++ A I +++EIQ V +
Sbjct: 330 NASIEAARAGEVGEGFAVVAEEVKALAEDAQSNAGHIESLVSEIQRDTADTVTDLVTTTD 389
Query: 395 VVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQE 454
++D+V +++ + + E++ VE+ + I+ T E +A E +AA E
Sbjct: 390 RIEDAVAQVEDA---MASFEEIVTAVEATAEGIEQVSDATNEQAASA----EEIAAMVDE 442
Query: 455 TTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
T A++++ + + S E + +L + V +L +
Sbjct: 443 TADLADDITTAVADIVSQTEAQSTILXDLDESVSELHD 480
>pir||C83080 probable chemotaxis transducer PA4520 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950762|gb|AAG07908.1|AE004866_2 (AE004866) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 673
Score = 120 bits (299), Expect = 3e-26
Identities = 90/348 (25%), Positives = 165/348 (46%), Gaps = 53/348 (15%)
Query: 147 TLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESR 206
TL+ + ME+++ GD++ + ++ + + S ++++ + +L++ V +E +
Sbjct: 349 TLKDLGRMMERVAGGDMTVSFQARSRDELGELGQSFNESVAKIHDLIERVSQTVGEVERQ 408
Query: 207 ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQ-ENITEIMEGMNITA-DVTQRTVDAME 264
+ +S+E ++A V QR Q E + M M TA +V + A+
Sbjct: 409 TLRVESVSAESNQA------------VAGQRSQIEQVATAMNQMAATAQEVARSAAMAVS 456
Query: 265 EFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIAD 324
+ V E LS G+ E + ++ + + A+ +A S ++ +++ I
Sbjct: 457 SANSVNQETLS----GRSLVESQVGSIQRLAGEIDQSVAAINRLASDSASISQVLDVIKG 512
Query: 325 IAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEK 384
IAEQTNLLALNAAIEAARAGE GRGFAVVA EVR LA+ ++++ +I ++ +Q V+
Sbjct: 513 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQQSTAEIEQMILRLQGGVDA 572
Query: 385 AVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKA 444
AV+ D +V NE A Q+ A
Sbjct: 573 AVKAMGSSHHTADGTV----------------------------NESAQVQQ-------A 597
Query: 445 LENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
LEN+ + ++++A+A++Q + ++ +NI+E+ ++ E
Sbjct: 598 LENILGAVGMIVDQNQQIAAAAEQQTAVAHDIDQNIVEINQAGERTAE 645
>pir||D83297 probable chemotaxis transducer PA2788 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948870|gb|AAG06176.1|AE004706_6 (AE004706) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 531
Score = 120 bits (299), Expect = 3e-26
Identities = 78/288 (27%), Positives = 142/288 (49%), Gaps = 16/288 (5%)
Query: 210 LTRISSEISEAINQVAEAIQQV---SVEAQRQQENITEIMEGMNITADVTQRTVDAMEEF 266
L + +E VAEA++Q + RQ +++ ++ MN +
Sbjct: 253 LANVKRSAAETDKDVAEALEQALGAGDQVARQHQDLDQVATAMNEMSATVAEVARHANHA 312
Query: 267 SGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIA 326
+ + ++A EG+ E A SQ + + ++ A+ + + + +VG ++ I+ IA
Sbjct: 313 AHSTRDAAALAHEGRRLVEHASSQTGALAEELEQTALALNTLHQHAGSVGQVLTVISSIA 372
Query: 327 EQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAV 386
EQTNLLALNAAIEAARAGE GRGFAVVA EVR+LA ++++ ++I+G++ ++Q+ AV
Sbjct: 373 EQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLANRTQQSTQEIQGLIEQLQDGANDAV 432
Query: 387 EETEKGVKVVDDSV---DFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKK 443
++ D + +G ++ E LD + ++ E + + ++
Sbjct: 433 AAMRGSASHAQSNLVEADSAAQALGRIVATVEELDGLNQQIATAAEEQSQVAQDIDRNIT 492
Query: 444 ALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
+ L+ A E TA+ S+ + VK ++ LR ++ + R
Sbjct: 493 NVSGLSEQAHEGTAAV----------LSANQRVKEHMAGLRVVLGRFR 530
>sp|P55439|Y4FA_RHISN PROBABLE CHEMORECEPTOR Y4FA (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|2182384|gb|AAB91658.1| (AE000072) Y4fA [Rhizobium
sp. NGR234]
Length = 845
Score = 120 bits (297), Expect = 4e-26
Identities = 109/427 (25%), Positives = 200/427 (46%), Gaps = 45/427 (10%)
Query: 60 AKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMV 119
A Q ++ LSIG M + +I+ G L+ + PI E+ + ++A G L A
Sbjct: 418 AGRQSQDANRLSIGAMVLGVIIALVSGAALVLTLKGPIGEITQTMRNLAGGLLDTAVANR 477
Query: 120 SKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESIL 179
++ DEIG++ A + DV +T +E+ SE + + HA+ +
Sbjct: 478 NRA-----DEIGEM-----ARALDVFKTNAKARIALEQRSE---QERVAAHAERE----- 519
Query: 180 NSMRKTISNLRELMKTVRDLALTLESRAND-------------LTRISSEISEAINQVAE 226
+ + + +E+ V LA L++ A L ++ ++ + A+ + +
Sbjct: 520 RNEAEKLRRDQEIAFAVDALADGLDAMAKGRLTSTIETPFAPALDKLRTDFNAAVAGLRQ 579
Query: 227 AIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEK 286
+ + + Q + ++ EG + T++ ++EE + V+E+++ R D+
Sbjct: 580 TLLDIRTTSSVIQGSGRQMAEGAKALSGRTEQQAASLEETAASVDEIVATIRRAGDQAAN 639
Query: 287 A---ISQVEDIQDAMKVI----RQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIE 339
A +S+ + D V+ A+ + S ++G II I DIA Q NLLALNA IE
Sbjct: 640 ADNTVSKAKQDADRSTVVVGNATAAMGRIEAASSHIGHIIEVIDDIAFQINLLALNAGIE 699
Query: 340 AARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDS 399
AARAGE G+GFAVVAQEVR LA+ S AA +I ++ + E KG +V ++
Sbjct: 700 AARAGEAGKGFAVVAQEVRELAQRSAGAAREIAALIG-------NSTAEVAKGAGLVSET 752
Query: 400 VDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASA 459
L + +++ I ++ + ++ + +A + + ++ AA A+ET A++
Sbjct: 753 GAALLDISKHILEISTQIEAIALSSREQASSIAEVNVAITRLDQLTQSNAAMAEETQAAS 812
Query: 460 EEVSASA 466
+S A
Sbjct: 813 WTLSGEA 819
>sp|P43500|FRZC_MYXXA FRZCD PROTEIN (FRIZZY AGGREGATION PROTEIN FRZCD)
>gi|94523|pir||C32185 Frz CD protein - Myxococcus
xanthus >gi|150089|gb|AAA25395.1| (J04157) FrzCD protein
[Myxococcus xanthus]
Length = 417
Score = 119 bits (296), Expect = 6e-26
Identities = 82/353 (23%), Positives = 162/353 (45%), Gaps = 52/353 (14%)
Query: 141 SQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLA 200
+Q++ Q L+ + + + EGD+S +L K I LR ++ + + A
Sbjct: 89 AQEIDQALDAL---IGLVREGDLSRWNTTTEDPQLGPLLEGFGKVIETLRTFVREINEAA 145
Query: 201 LTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTV 260
L L S AN + S++ + + A AI + + + + +I E A V + T+
Sbjct: 146 LRLSSSANQVLAASTQHETSSTEQAAAIHETTATMEELKHASAQIAENAGSVARVAEETL 205
Query: 261 DAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIIN 320
A G + E + ++ + G + ++ ++++ + +G ++
Sbjct: 206 GAARAGRGAIGEFIQAMQQIRSDGV--------------AVADSIAKLSKRVERIGTVVE 251
Query: 321 AIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQE 380
I +IA++++LLALNAA+E +RAGE G+GF++VA E+R LAE ++ ++I+ ++ EI+E
Sbjct: 252 VIDEIADRSDLLALNAALEGSRAGEAGKGFSIVAAEMRRLAENVLDSTKEIKNLITEIRE 311
Query: 381 KVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVEN 440
A E + GE L V
Sbjct: 312 ATAAAAGAAEASKSATES---------------GEKLGAV-------------------- 336
Query: 441 AKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
A +A+E + A QET+ +A ++ + Q+Q ++ E+V ++ E+ D+ ++ +A
Sbjct: 337 AAQAVEGILAGVQETSDAARVINLATQQQRTATEQVVASMAEIEDVTRQTTQA 389
>pir||A83624 probable chemotaxis transducer PA0176 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946009|gb|AAG03566.1|AE004455_7 (AE004455) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 679
Score = 119 bits (296), Expect = 6e-26
Identities = 89/384 (23%), Positives = 176/384 (45%), Gaps = 50/384 (13%)
Query: 95 RPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITER 154
R E++++ ++ A G S+ E K + +L + ++ + L ++
Sbjct: 291 RAEQEVSQLVQAAAAGDFSKRVEEAGKEGF-----FLRLAKDLNSLVDTADRGLRDVSRM 345
Query: 155 MEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRIS 214
+ +++GD++ ++ +G F + + T +L ++ +R+ A T+ + A+++ +
Sbjct: 346 LGALAQGDLTQRIEADYQGTFGQLKDFSNDTAQSLSRMLGQIREAADTINTAASEIASGN 405
Query: 215 SEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVL 274
+E+S Q A ++++ T +MEE + V
Sbjct: 406 AELSARTEQQASSLEE----------------------------TASSMEELTSTVKLNA 437
Query: 275 SIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLAL 334
AR+ A ++ + + + E ++ + DII I IA QTN+LAL
Sbjct: 438 ENARQANSLAANASEVATQGGTVVQKVVSTMSSINESARKIADIIGVIDGIAFQTNILAL 497
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVK 394
NAA+EAARAGE GRGFAVVA EVR LA+ S AA++I+ ++++ +V++ E G
Sbjct: 498 NAAVEAARAGEQGRGFAVVAGEVRTLAQRSAAAAKEIKTLISD-------SVDKVENGNT 550
Query: 395 VVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQE 454
+V + + + V + + +++ ++ + A +E A+ + Q+
Sbjct: 551 LVAQAGQTMSDIVVAIRRVTDIMSEIAA-------ASAEQSTGIEEVNSAVSQMDDMTQQ 603
Query: 455 TTASAEEVSASA---QEQASSMEE 475
A EE +A+A QEQA + +
Sbjct: 604 NAALVEEAAAAAEAMQEQAGLLNQ 627
>pir||S56581 methyl-accepting chemotaxis protein I - Escherichia coli
>gi|537197|gb|AAA97252.1| (U14003) CG Site No. 63;
alternate gene name cheD [Escherichia coli]
Length = 551
Score = 119 bits (295), Expect = 8e-26
Identities = 89/356 (25%), Positives = 172/356 (48%), Gaps = 37/356 (10%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
I ++ + + + + I+ GD+ ++V + + S+R L + VR+
Sbjct: 214 IKASLVAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNG 273
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
A + S A+++ ++++S Q A ++++ + ++ +TA V Q
Sbjct: 274 ANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQ-------------LTATVKQNA 320
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
+A + + + A E +G K + V Q +++++ S+ + DII
Sbjct: 321 ENARQ-----ASHLALSASETAQRGGKVVDNVV----------QTMRDISTSSQKIADII 365
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
+ I IA QTN+LALNAA+EAARAGE GRGFAVVA EVRNLA+ S +AA +I+ +
Sbjct: 366 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSL----- 420
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
+E +V + + G +V+ + + + E V + + +++ ++ S + + V
Sbjct: 421 --IEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVA 478
Query: 440 NAKKALENLAASAQETTASAE--EVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
+ + AA +E+ A+A E AS +A ++ +++ E +VK + A
Sbjct: 479 EMDRVTQQNAALVEESAAAAAALEEXASRLTEAVAVFRIQQQQRETSAVVKTVTPA 534
>gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium sp. NRC-1]
Length = 481
Score = 119 bits (295), Expect = 8e-26
Identities = 83/338 (24%), Positives = 165/338 (48%), Gaps = 16/338 (4%)
Query: 161 GDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEI--- 217
G++ D L + G F++ ++ + E ++ R+L ++ A +T + +++
Sbjct: 153 GELVDTLDAYDAGRFDATVDIAAEDTLLDDEYIQIGRNLTEFGDTLAAHITEVHNDVERL 212
Query: 218 ---SEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVL 274
S+A+++ + I ++S + +E ++ T T D + + S
Sbjct: 213 EAASQAVSESSAEIDELSTAQSTNVSTVATEVETLSATVQEIASTADEVVDTSATAER-- 270
Query: 275 SIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLAL 334
+A +G A + D+ A + V+ + +++ ++++ I IAEQTN+LAL
Sbjct: 271 -LADDGSAAASDAADMMADVATAADSVTSDVEALQNRIEDIDEVVDVITGIAEQTNMLAL 329
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVK 394
NA+IEAARAGE G GFAVVA+EV+ LAE+++ A I +++EIQ V +
Sbjct: 330 NASIEAARAGEEGEGFAVVAEEVKALAEDAQSNAGHIESLVSEIQRDTADTVTDLVTTTD 389
Query: 395 VVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQE 454
++D+V +++ + + E++ VE+ + I+ T E +A E +AA E
Sbjct: 390 RIEDAVAQVEDA---MASFEEIVTAVEATAEGIEQVSDATNEQAASA----EEIAAMVDE 442
Query: 455 TTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLRE 492
T A++++ + + S E + +L + V +L +
Sbjct: 443 TADLADDITTAVADIVSQTEAQSAMLHDLDESVSELHD 480
>pir||D75590 methyl-accepting chemotaxis protein - Deinococcus radiodurans
(strain R1) >gi|6460728|gb|AAF12433.1|AE001863_58
(AE001863) methyl-accepting chemotaxis protein
[Deinococcus radiodurans]
Length = 743
Score = 118 bits (294), Expect = 1e-25
Identities = 100/455 (21%), Positives = 198/455 (42%), Gaps = 71/455 (15%)
Query: 67 TLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYRE 126
TL L G++ ++ AL LM + RP++++ + ++ G L+ +
Sbjct: 328 TLALQFGLLLLLLGAVAALLFALMRAITRPLSQLTDASRQLSAGDLN------VDVPVTT 381
Query: 127 DDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTI 186
DE+ L F + ++ + + + E+ + M+ I
Sbjct: 382 QDELALLSRSFNDAAAELRRNQLRVDQEREEAQQ---------------------MQSNI 420
Query: 187 SNLRELMKTVRDLALTLESRAND---------LTRISSEISEAINQVAEAIQQVSVEAQR 237
++ + D LT + D + + E+++ + +V A Q V+ + +
Sbjct: 421 GEFLDVTMDIADGDLTRRGKVTDDVLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQ 480
Query: 238 QQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDA 297
+I +G +TA+ ++R + E S + ++ A++ ++A+ + Q A
Sbjct: 481 MLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDLARSAQDSAAAAQQALQTSQQGQQA 540
Query: 298 -------MKVIRQAVQEVA-------EMSKNVGDIINAIADIAEQTNLLALNAAIEAARA 343
M IR+ Q+VA E S+ + I++ I I+ QTNLL+L+A+IEAA A
Sbjct: 541 VQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGA 600
Query: 344 GELGRGFAVVAQEVRNLAEESKEAAEKIRGILN-------EIQEKVEKAVEETEKGVKVV 396
GE G FAVVA EVR LAE++ EA ++ ++ ++++ V+ + + EKG +V
Sbjct: 601 GEAGSRFAVVADEVRQLAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVA 660
Query: 397 DDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETT 456
+++ L+E L +I + + ++ D+ A + +E L Q+
Sbjct: 661 EEAGSRLQE----LGDIAQRSAQLAGQMSDVSGAQA----------RDIEQLGQGVQDIA 706
Query: 457 ASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
A AE S Q + E+++ +L + + R
Sbjct: 707 ALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFR 741
>pir||H83445 probable chemotaxis transducer PA1608 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947573|gb|AAG04997.1|AE004588_10 (AE004588)
probable chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 118 bits (294), Expect = 1e-25
Identities = 82/332 (24%), Positives = 163/332 (48%), Gaps = 20/332 (6%)
Query: 138 RAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVR 197
R+I+Q + + L + E I+ GD++ + + + +L +++ + LR+ ++ +
Sbjct: 212 RSITQPLGEALRVA----EVIASGDLTSRIDTSGRDEPAKLLVALQGMQAQLRQTIQQIG 267
Query: 198 DLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQ 257
A L S A +L+ ++ + + ++ Q + IQ + + E+ + T+D +
Sbjct: 268 SSATQLASAAEELSAVTEQGNRSLTQQNDEIQMAATAVNEMTAAVEEVARNASSTSDASS 327
Query: 258 RTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGD 317
+ + A+ G+ + + + + + + + V +AE ++++
Sbjct: 328 ASEQS--------------AQNGRQRVLETVQAIRLMSEEVDNTSALVGGLAEKAQDISK 373
Query: 318 IINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNE 377
+++ I IAEQTNLLALNAAIEAARAGE GRGFAVVA EVR LA ++E+ +I ++
Sbjct: 374 VLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQESTREIEQMIAN 433
Query: 378 IQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMN-IGELLDDVESKLQDIKNELANTQE 436
IQE AV + + ++ + E G +N I E + + + I + +
Sbjct: 434 IQEGTGAAVGAMDSSSVRARNMLE-IAEAAGLALNEIAERVGQINERTLVIASASEQQAQ 492
Query: 437 HVENAKKALENLAASAQETTASAEEVSASAQE 468
+ L N+ + +T+A + + +A++QE
Sbjct: 493 VAREVDRNLVNIRDISLQTSAGSNQTAAASQE 524
>gi|10954717 hypothetical chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes] >gi|8918717|dbj|BAA97782.1|
(AB039932) hypothetical chemoreceptor gene~similar to
orf2 gene in pTi15955 [Agrobacterium rhizogenes]
>gi|10567381|dbj|BAB16190.1| (AP002086) hypothetical
chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes]
Length = 758
Score = 118 bits (293), Expect = 1e-25
Identities = 96/420 (22%), Positives = 196/420 (45%), Gaps = 28/420 (6%)
Query: 69 WLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDD 128
W + ++++ + G +G + +P+ ++ + + G + VS+ D
Sbjct: 342 WAGLTTLAVLFGM-GIVGYVFSSRLTKPLKDITGLMNRLNNGDQTIEIRSVSR-----SD 395
Query: 129 EIG---KLIEGFRAISQDVLQTLEIITERMEKIS-EGDVSDDLKVHAKGDFESILNSMRK 184
EIG + +E FR + D ++ E +R ++ E + + + + + E ++ +
Sbjct: 396 EIGIMARALESFRQSAADKVRMEEEAIQRNGQLEHERQLRETDRARSAAELEVAVSELAT 455
Query: 185 TISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITE 244
+ NL E R A L ++ + + ++ ++ ++Q+ + Q N +
Sbjct: 456 GLKNLAEGRLDHR----IEHPFAPSLDQLRQDFNGSMTRLQATMRQIRDNVEMIQGNGNQ 511
Query: 245 IMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQ----DAMKV 300
+ E + T++ ++EE + V+E+ R ++ + A V + D+ V
Sbjct: 512 MAEAAEDLSKRTEQQAASLEETAAAVDEITVTVRSSAERAKDADQIVRQAKRSADDSAIV 571
Query: 301 IRQAVQ---EVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEV 357
+ A+ + E S+ + I I +IA QTNLLALNA +EAARAG+ G+GFAVVAQEV
Sbjct: 572 VDNAIDAMGRIEEASRQIEQITGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEV 631
Query: 358 RNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELL 417
R LA+ S +AA++I+ ++N K+ E G +V ++ L + ++ I +
Sbjct: 632 RELAQRSAKAAKEIKVLIN-------KSTAEVNTGSHLVQETGAVLAKISTQIVTISHHV 684
Query: 418 DDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVK 477
+ + D L V + ++ AA +ETTA++ E+++ A + +++ +
Sbjct: 685 ETIARGSHDQSCALQGVNSTVNQMDQMTQHNAAMVEETTAASRELASQADSLLALVQQFR 744
>sp|P35841|DCRA_DESVH CHEMORECEPTOR PROTEIN A >gi|282156|pir||A42275 chemoreceptor
protein A dcrA - Desulfovibrio vulgaris
>gi|145114|gb|AAA23379.1| (M81168) chemoreceptor protein
A [Desulfovibrio vulgaris]
Length = 668
Score = 117 bits (291), Expect = 2e-25
Identities = 115/495 (23%), Positives = 203/495 (40%), Gaps = 108/495 (21%)
Query: 36 NLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMR 95
N E T + V IR+ ++ +S L+ G++ +AV+ + +N M
Sbjct: 239 NDELTRLNAKLASMVTTIRDQMQYNRSVLE-------GIIVPLAVVDARNRIEFINQPMC 291
Query: 96 PINEMA----------------KIAESIAEGKLSRAREMVSKIQYREDD--------EIG 131
I A + E I L I YR DD E+
Sbjct: 292 TIVSTACHEYSGKDFSAFMQQGGVEEDITATVLKGGNNQQGNISYRRDDGTVFPLHYEVS 351
Query: 132 KLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRE 191
L + A++ + +++ E A+ E ++ + +
Sbjct: 352 PLRDDRGAVNGAIAVIIDLTQEE---------------EARRRIEEQRINLLRVADEVTG 396
Query: 192 LMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNI 251
+ +T+ A L +R +L R ++E + QVA A+++++V N + E
Sbjct: 397 VAETLVRAAEALVTRMGELERDATEAASETTQVATAMEEMNVTVTEVARNASSTAE---- 452
Query: 252 TADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEM 311
AD R E + V E +A+ +D E ++ E+A
Sbjct: 453 MADCQWRAQSGGTEMANTVRETRQVAQRTEDLAE------------------SLHELARR 494
Query: 312 SKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKI 371
+ N+G +I I +IA+QTNLLALNAAIEAARAG+ GRGFA+VA EVR LAE++ A
Sbjct: 495 ADNIGRVIEVINEIADQTNLLALNAAIEAARAGDAGRGFALVADEVRKLAEKTMVAT--- 551
Query: 372 RGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNEL 431
+VE+A+ ++G +D+V+ + ET + ++
Sbjct: 552 --------REVEQAIAAIQQG---SNDAVEVMTET---------------------RQQV 579
Query: 432 ANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
T E+ K L + A+ ++ ++++Q+S+ +E+ RN+ + D+ + R
Sbjct: 580 EVTAGKAEDTGKVLSGIVGRAESIADMVRNIATASEQQSSTSDEINRNVTRINDLTEASR 639
Query: 492 -----EAVEFIKVEG 501
+A+ +VEG
Sbjct: 640 DGCGKQAMPIRQVEG 654
>sp|P29486|TCPI_VIBCH TOXIN CORREGULATED PILUS BIOSYNTHESIS PROTEIN I (TCP PILUS
BIOSYNTHESIS PROTEIN TCPI) >gi|409772|gb|AAA21729.1|
(L25659) toxin co-regulated pilus [Vibrio cholerae]
Length = 620
Score = 117 bits (291), Expect = 2e-25
Identities = 90/354 (25%), Positives = 174/354 (48%), Gaps = 36/354 (10%)
Query: 151 ITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLR-ELMKTVRDLALTLESRAND 209
I E + +S+G + + + F + L+++ +++ NL+ L+ VR+ T+ ND
Sbjct: 296 IREWILSLSDGQIKERRPIK----FHNELDTIAQSLENLQFRLLDVVRNSHRTM----ND 347
Query: 210 LTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGV 269
L+ ++I+ +I Q+ + I + T ++ + D M++
Sbjct: 348 LSIKQTDITYSIEG----------NTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSA 397
Query: 270 ---VNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIA 326
+ E D + + Q E + ++ +Q + ++ E S N+ + + I +I+
Sbjct: 398 ELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNIS 457
Query: 327 EQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAV 386
+QTNLLALNAAIEAARAGE GRGFAVVA EVR+LA +++++ I+GI+ ++QE+ + A
Sbjct: 458 DQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLAD 517
Query: 387 EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALE 446
+ + V ++ ++ + + I + + ++ S + I + AN Q+ V
Sbjct: 518 QVMTRNVSLIHETQVANRALIASFNLISDKVLEI-SNINSIVSTAANEQKIV-------- 568
Query: 447 NLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
++ E++ QE S+ME K+ + D+ L +A+ F K+E
Sbjct: 569 -----TEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKIE 617
>pir||D82274 toxin co-regulated pilus biosynthesis protein I VC0825 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655276|gb|AAF93988.1| (AE004168) toxin co-regulated
pilus biosynthesis protein I [Vibrio cholerae]
Length = 620
Score = 117 bits (290), Expect = 3e-25
Identities = 90/354 (25%), Positives = 174/354 (48%), Gaps = 36/354 (10%)
Query: 151 ITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLR-ELMKTVRDLALTLESRAND 209
I E + +S+G + + + F + L+++ +++ NL+ L+ VR+ T+ ND
Sbjct: 296 IREWILALSDGQIKERRPIK----FHNELDTIAQSLENLQFRLLDVVRNSHRTM----ND 347
Query: 210 LTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGV 269
L+ ++I+ +I Q+ + I + T ++ + D M++
Sbjct: 348 LSIKQTDITYSIEG----------NTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSA 397
Query: 270 ---VNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIA 326
+ E D + + Q E + ++ +Q + ++ E S N+ + + I +I+
Sbjct: 398 ELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNIS 457
Query: 327 EQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAV 386
+QTNLLALNAAIEAARAGE GRGFAVVA EVR+LA +++++ I+GI+ ++QE+ + A
Sbjct: 458 DQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLAD 517
Query: 387 EETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALE 446
+ + V ++ ++ + + I + + ++ S + I + AN Q+ V
Sbjct: 518 QVMTRNVSLIHETQVANRALIASFNLISDKVLEI-SNINSIVSTAANEQKIV-------- 568
Query: 447 NLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
++ E++ QE S+ME K+ + D+ L +A+ F K+E
Sbjct: 569 -----TEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKIE 617
>gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [Treponema
denticola]
Length = 369
Score = 116 bits (289), Expect = 4e-25
Identities = 102/422 (24%), Positives = 190/422 (44%), Gaps = 57/422 (13%)
Query: 70 LSIGVMSIVA-VISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDD 128
+SI ++ I+ +I+ A+ + + + PI + + IA+GK ++ ++ +D
Sbjct: 1 MSIRILGIIILIITLAVIYAVAHYMLHPIRKTVSALKDIAQGK----GDLTVRLPINGND 56
Query: 129 EIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISN 188
EI L E F QT+E I ++ + + VS + A G E + ++M +T S
Sbjct: 57 EITDLSEYFN-------QTIEKIGAAIKNVGKNSVS----MEAIG--EELASNMTQTASA 103
Query: 189 LRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEG 248
+ E+ + + ++A +T E + I Q+ I+Q++ + Q ++
Sbjct: 104 INEISANIEGVKNQTLTQAASVT----ETAATIEQIVRTIKQLNNSIENQAASVA----- 154
Query: 249 MNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEV 308
R+ ++EE + + + D + S ED ++ + Q++
Sbjct: 155 ---------RSTASIEEMVANIASITQTLEKTYDVVKNLASATEDGKETIITSNSVTQKI 205
Query: 309 AEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAA 368
AE S ++ + + I IA QTNLLA+NAAIEAA AGE G+GFAVVA E+R LAE+S
Sbjct: 206 AEESGSLMEASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIRKLAEDSATQG 265
Query: 369 EKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIK 428
+ I L + ++E + K V+D + N+ E + + +L +
Sbjct: 266 KTITSTLKTLSSEIESLSVSS----KTVEDK-------FSTIFNLSEQVKSMSDRLTEAM 314
Query: 429 NELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVK 488
+E N + V A K + + EV A ++E E V +++L ++ +
Sbjct: 315 HEQENGSKEVLGAIKNINTVTV----------EVQAGSEEMLKGGEGVAEEMLKLDNLTR 364
Query: 489 KL 490
+
Sbjct: 365 MI 366
>pir||T03481 methyl-accepting chemotaxis protein - Rhodobacter capsulatus
>gi|3128282|gb|AAC16134.1| (AF010496) chemoreceptor
[Rhodobacter capsulatus]
Length = 638
Score = 116 bits (289), Expect = 4e-25
Identities = 100/365 (27%), Positives = 164/365 (44%), Gaps = 29/365 (7%)
Query: 97 INEMAKIAESIAEGKLSRAREMVSKIQYREDD-EIGKLIEGFRAISQDVLQTLEIITERM 155
+ E K E+ S ARE ++ RE + E +L E R +++ Q R
Sbjct: 264 MEEQRKAQEAALARAQSEAREREEAMRLREAELERERLQEEARRLTEREEQRRREEAARE 323
Query: 156 EKISE-----GDVSDDLKVHAKGDFES-ILNSMRKTISNLRELMKTVRDLALTLESRAND 209
+++E G ++ L+ + GD I S ++ NLR +D
Sbjct: 324 AQMAEQNHVVGTLAAGLRAMSAGDLTGRITQSFPESYENLR-----------------HD 366
Query: 210 LTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGV 269
+++S I + A V +E + +E+ + A + T AM E +
Sbjct: 367 FNAALAKMSGLIASIVRATDVVELETRHLSSASSELGRRTEMQAASLEETAAAMNEMASS 426
Query: 270 VNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQT 329
V ++ AR + + +D ++ QA+ ++A S+ + I + I DIA QT
Sbjct: 427 VENSVAGARTAAQAVSRTRTTTATGRDVVRQTAQAMDDIARSSEQISRITSVIDDIAFQT 486
Query: 330 NLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEET 389
NLLALNA +EAARAGE GRGFAVVA EVR LA+ S EAA +I +++ +V VE
Sbjct: 487 NLLALNAGVEAARAGESGRGFAVVASEVRALAQRSSEAAREIATLIDTSSRQVASGVELA 546
Query: 390 EKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIK---NELANTQEHVENAKKALE 446
+ ++ + E G L++I + + + ++ N+L +H NA E
Sbjct: 547 SRSDTALEQIETLVTELDGLLVSIANAATEQSAGISEVTAAVNQLDQVTQH--NAAMFEE 604
Query: 447 NLAAS 451
N AA+
Sbjct: 605 NSAAT 609
>gb|AAG34154.1|AF312876_1 (AF312876) methyl-accepting chemotaxis protein McpU [Sinorhizobium
meliloti]
Length = 707
Score = 116 bits (289), Expect = 4e-25
Identities = 101/408 (24%), Positives = 188/408 (45%), Gaps = 29/408 (7%)
Query: 71 SIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEI 130
+I + V + L L +RP+ +M E +A G L V+ D+I
Sbjct: 288 TIATILAVGAMIAFLATLLSRLVIRPVTDMTGAMEKLAAGSLD-----VTIPGEERRDQI 342
Query: 131 GKLIEGFRAISQDVLQT--LEIITERMEKISEGD--VSDDLKVHAKGDFESILNSMRKTI 186
G + + ++ LE + +SE + + K + + ++++ +
Sbjct: 343 GSMAAAVAVFRANAVERKRLEDEADSNRSLSERERLEREAQKTRDAAEVQHAVDALATGL 402
Query: 187 SNLRELMKTVRDLALTLESR-ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEI 245
L + DLA + S A+ L R+ + + ++ ++ + V A+ TEI
Sbjct: 403 GRLAD-----GDLAYRIGSPFADRLDRLREDFNNSVAKLHNTLCAVGANARAIDAGATEI 457
Query: 246 MEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVE----DIQDAMKVI 301
+ A T++ ++EE + + E+ + R+ + E+ + V + + +V+
Sbjct: 458 RSAADDLARRTEQQAASVEETAAALEEITTTVRDSAHRAEEVGALVARTRAGAEKSGEVV 517
Query: 302 RQAVQEVAEMSKNVGDIINAIA---DIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVR 358
+ AV+ + + K+ G+I N I DIA QTNLLALNA +EAARAGE G+GFAVVAQEVR
Sbjct: 518 QNAVEAMHAIEKSSGEISNIIGVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVR 577
Query: 359 NLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLD 418
LA+ S AA++I+ ++ E+V GV +V D+ L+ V + I + +
Sbjct: 578 ELAQRSANAAKEIKALITTSGEQV-------HSGVTLVGDTGRALQAIVVEVQEINKHVS 630
Query: 419 DVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASA 466
+ + ++ L V + + AA ++ TA++ +++ A
Sbjct: 631 AIVTATREQSTGLQEINTAVNTMDQGTQQNAAMVEQQTAASHGLASEA 678
>pir||T03461 methyl-accepting chemotaxis protein mcpA - Rhodobacter capsulatus
>gi|3128262|gb|AAC16114.1| (AF010496) methyl-accepting
chemoreceptor [Rhodobacter capsulatus]
Length = 881
Score = 116 bits (287), Expect = 7e-25
Identities = 88/370 (23%), Positives = 164/370 (43%), Gaps = 36/370 (9%)
Query: 99 EMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAIS-QDVLQTLEIITERMEK 157
+ A +A + AE R + + + +E + E RA Q+ + + E +
Sbjct: 499 QQAALAAAEAERDRDRQEQARQEAERQERRRLRDAAEAERAAQLQEQQLVVSRLAEALRA 558
Query: 158 ISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEI 217
+S GD++ ++ +E + + + ++ + EL+ + + +++S A+ L S E+
Sbjct: 559 MSAGDLTARIETAFPAAYEGLRSDFNQAVTRMAELLSEIVRASGSVQSEAHQLGAASGEL 618
Query: 218 SEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIA 277
A ++++ + + ++ + ++G A +T + VV L
Sbjct: 619 GRRTETQAASLEETAAAMNQMAASVAQALQGAREAARAVGQTRETTAAGREVVRRTL--- 675
Query: 278 REGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAA 337
QA+ ++A+ S+ + I + I DIA QTNLLALNA
Sbjct: 676 -------------------------QAMTDIAQSSEQISRITSVIDDIAFQTNLLALNAG 710
Query: 338 IEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVD 397
+EAARAGE GRGFAVVA EVR LA+ S EAA +I G+ + +V + +GV++
Sbjct: 711 VEAARAGEAGRGFAVVASEVRGLAQRSSEAAREIAGL-------IATSVRQVGEGVELAS 763
Query: 398 DSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTA 457
S L + + LL +E+ + ++ V + ++ AA +E A
Sbjct: 764 GSDAALGRIEDLVSRLDALLAAIETGAGEQSAGISEITAAVNQLDQVTQHNAAMFEENAA 823
Query: 458 SAEEVSASAQ 467
+ + + AQ
Sbjct: 824 ATQALLGEAQ 833
>pir||E82431 methyl-accepting chemotaxis protein VCA0663 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658080|gb|AAF96564.1| (AE004396) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 587
Score = 115 bits (286), Expect = 9e-25
Identities = 85/355 (23%), Positives = 165/355 (45%), Gaps = 26/355 (7%)
Query: 138 RAISQDVLQTLEIITERMEKISEG-DVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV 196
R+I+ V Q L +I ++I++ D+S ++ + ++ + L+ +
Sbjct: 254 RSINLQVSQLLLVI----QRIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSS 309
Query: 197 RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT 256
+ + L S + + ++ E N +E + ++ Q+ I+EI E NI D
Sbjct: 310 QTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDG- 368
Query: 257 QRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVG 316
VN+ A +G+ + ++ + ++ + ++ + + +G
Sbjct: 369 -------------VNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIG 415
Query: 317 DIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILN 376
++ I IAEQTNLLALNAAIEAARAGE GRGFAVVA EVR+LA + ++ E+I +++
Sbjct: 416 GAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVS 475
Query: 377 EIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQE 436
IQ ++ + V++ +D + +ET+ + E L + + I++
Sbjct: 476 NIQSQMSQVVDD-------IDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAA 528
Query: 437 HVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLR 491
+E + +++ S E +E SAQ+ + ++ V R + + V + R
Sbjct: 529 AIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
>pir||C83184 probable chemotaxis transducer PA3708 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949872|gb|AAG07095.1|AE004789_15 (AE004789)
probable chemotaxis transducer [Pseudomonas aeruginosa]
Length = 542
Score = 115 bits (286), Expect = 9e-25
Identities = 99/406 (24%), Positives = 181/406 (44%), Gaps = 30/406 (7%)
Query: 97 INEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVL---QTLEIITE 153
+NEM ++ + IA+ RA + + + +D E+ L+ A+ + L IT+
Sbjct: 164 LNEMIELNKDIAD----RASDNI--VNAVDDAELSMLVTLLLAVVVAGICGFLLLRAITQ 217
Query: 154 RMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRI 213
++KI L + A GD + LN R+ + +A L+ + R
Sbjct: 218 PIQKIVRS-----LDLMAGGDLTARLNLGRR--DEFGAIETGFNGMAEELKGLVSQAQRS 270
Query: 214 SSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEV 273
S +++ ++ ++A +Q A TEI A ++ V M E SG +
Sbjct: 271 SVQVTTSVTEIAATSKQQQATATETAATTTEIGATSREIAATSRDLVRTMSEVSGAAEQT 330
Query: 274 LSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLA 333
++A G+ + + + A ++ + + E + N+ ++ I +A+QTNLL+
Sbjct: 331 STLAGSGQLGLARMEETMHHVMGAADLVNAKLAILNEKAGNINQVVTTIVKVADQTNLLS 390
Query: 334 LNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGV 393
LNAAIEA +AGE GRGFAVVA EVR LA+++ A I ++ EIQ V GV
Sbjct: 391 LNAAIEAEKAGEYGRGFAVVATEVRRLADQTAVATYDIEQMVREIQSAV-------SAGV 443
Query: 394 KVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQ 453
+D + ++ + + +GE L + ++Q + V+ + ++ A A+
Sbjct: 444 MGMDKFSEEVRRGIAEVGQVGEQLSQIIQQVQAL-------APRVQMVNEGMQAQATGAE 496
Query: 454 ETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
+ + ++ + + S+ + I EL + LR V KV
Sbjct: 497 QINQALVQLGEATGQTVESLRQASFAIDELNLVANGLRNGVSRFKV 542
>pir||E83041 probable chemotaxis transducer PA4844 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951114|gb|AAG08229.1|AE004897_7 (AE004897) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 657
Score = 115 bits (285), Expect = 1e-24
Identities = 91/356 (25%), Positives = 162/356 (44%), Gaps = 42/356 (11%)
Query: 111 KLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISE------GDVS 164
+L R+ ++ ++ + E +L R I ++ + +I ++ + G +
Sbjct: 278 RLDAVRQALATLEPQVRGERQRLQGQVRLIQGGMIALILLIALAIDSLQRRLARVLGQLV 337
Query: 165 DDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQV 224
L A GDF + S+R +LR L + L R+ S ++E + +
Sbjct: 338 PALSAWADGDFSRPI-SLRTRTEDLRNL--------------EDSLNRLRSFLAELVGAI 382
Query: 225 AEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKG 284
+QV+ +Q E + + G+ A T + DA+ + + +V A + D
Sbjct: 383 HRRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDALGDMEAAIQQVAGDASQTADAS 442
Query: 285 EKAISQVE--------------DIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTN 330
A VE ++ D ++ Q+++ +AE S +G ++ I IAEQTN
Sbjct: 443 RSAGQAVEHGQRVIGESLGGLRELVDEVQGNAQSIERLAEESATIGSVLTVIRSIAEQTN 502
Query: 331 LLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETE 390
LLALNAAIEAARAG+ GRGFAVVA+EVR+LA+ + A E+I+ ++ +Q+ ++VE
Sbjct: 503 LLALNAAIEAARAGDQGRGFAVVAEEVRSLAQRTAGATEEIQQLIGRLQQAARQSVEAMR 562
Query: 391 KGVKVVDDSVD-------FLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
V+ + + + L E V + IG + + + + + H E
Sbjct: 563 SQVEHAERTAEQAGAAEGALDEVVAAIHTIGVMAERIAEGSTQQSQAVGEIRSHSE 618
>pir||B82110 methyl-accepting chemotaxis protein VC2161 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656714|gb|AAF95306.1| (AE004288) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 623
Score = 115 bits (284), Expect = 1e-24
Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 57/367 (15%)
Query: 134 IEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELM 193
I G + + +++ L ++ +E ++ G +GD L++ T L
Sbjct: 284 IIGLSFLIKVLMKPLGALSRAIEDVASG----------QGDLTKRLDT--NTDMEFAILA 331
Query: 194 KTVRDLALTLESRANDLTRISSEISEAINQ-VAEAIQQVSVEAQRQQENITEIMEGMNIT 252
K TL+ R L I +EI Q V A + S AQ+ QE + ++ M+
Sbjct: 332 KDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQE-LEQLATAMHEM 390
Query: 253 ADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKV-IRQAVQEVAEM 311
A + + + +E A E G K +S DA+ I QAV+EV +
Sbjct: 391 AVTATEVANNAQGAAAAAHE----ADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGL 446
Query: 312 ---SKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAA 368
+ N+ I+ I DIA+QTNLLALNAAIEAARAGE GRGFAVVA EVR LA+ ++++
Sbjct: 447 EVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQST 506
Query: 369 EKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIK 428
+IR ++ ++Q + DD+V K
Sbjct: 507 TEIRNMIEQLQSGASAVSAAMNESKYTADDAVQ--------------------------K 540
Query: 429 NELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVK 488
+LAN ++L+ + + Q + +++++A+EQ+ EE+ N ++++D+
Sbjct: 541 AQLAN---------ESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLST 591
Query: 489 KLREAVE 495
++ ++ +
Sbjct: 592 QVADSAK 598
>gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum]
Length = 427
Score = 114 bits (283), Expect = 2e-24
Identities = 97/394 (24%), Positives = 179/394 (44%), Gaps = 41/394 (10%)
Query: 139 AISQDVLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV 196
A+++ +++ L +E I+ EGD++ L V GD S+L + M+ +
Sbjct: 37 AVARKIVRPLRSTVRVLEDIAYGEGDLTVRLPV-VGGDEVSLL------CQYFNQTMEKI 89
Query: 197 RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT 256
R T+ S ++D+ RI E++ + + A A+ +++ + + + G++ D
Sbjct: 90 RFAIATVGSSSDDMRRIGDELASNMTETASAVNEITANIDGVKHRVDLQVSGVSEATDTV 149
Query: 257 QRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVA------- 309
+R + ++ + + + E+ ++ + I ++ +AV +A
Sbjct: 150 ERIIKTIKGLNSSIETQAVNVAQSSSSVEQMVANIVSITQTLERSDEAVHSLAIATADGR 209
Query: 310 -----------EMSKNVGDIINA---IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 355
++S+ G ++ A I IA QTNLLA+NAAIEAA AGE G+GFAVVA
Sbjct: 210 DTLVSSSGITQKISEESGSLLEASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVAD 269
Query: 356 EVRNLAEESKEAAEKIRGILNEIQEKVE------KAVEETEKGVKVVDDSVDFLKETVGY 409
E+R LAEES + I L + +++ KAVEE + + D V + ++
Sbjct: 270 EIRKLAEESSTQGKTITETLKTLSVEIDTLSTSSKAVEEQFDTIFRLSDQVRTMSRSLTE 329
Query: 410 LMNIGELLDDVESKLQDIKNELANTQEHVENAKKAL---ENLAASAQETTASAEEVSASA 466
M E D L IK+ A T + E + L E +A Q E++ S
Sbjct: 330 AMK--EQSDGSREVLAAIKSINAATVDVKEGSADMLKGGEVIAREMQRLDDLTSEIARSM 387
Query: 467 QEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
E A+ E+ + E+ +I ++ ++++ + E
Sbjct: 388 NEMAAGAIEINNAVHEVNEITQRSKQSISSLADE 421
>pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1) - syphilis
spirochete >gi|3322777|gb|AAC65475.1| (AE001225)
methyl-accepting chemotaxis protein (mcp2-1) [Treponema
pallidum]
Length = 845
Score = 114 bits (283), Expect = 2e-24
Identities = 97/394 (24%), Positives = 179/394 (44%), Gaps = 41/394 (10%)
Query: 139 AISQDVLQTLEIITERMEKIS--EGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV 196
A+++ +++ L +E I+ EGD++ L V GD S+L + M+ +
Sbjct: 455 AVARKIVRPLRSTVRVLEDIAYGEGDLTVRLPV-VGGDEVSLL------CQYFNQTMEKI 507
Query: 197 RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT 256
R T+ S ++D+ RI E++ + + A A+ +++ + + + G++ D
Sbjct: 508 RFAIATVGSSSDDMRRIGDELASNMTETASAVNEITANIDGVKHRVDLQVSGVSEATDTV 567
Query: 257 QRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVA------- 309
+R + ++ + + + E+ ++ + I ++ +AV +A
Sbjct: 568 ERIIKTIKGLNSSIETQAVNVAQSSSSVEQMVANIVSITQTLERSDEAVHSLAIATADGR 627
Query: 310 -----------EMSKNVGDIINA---IADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 355
++S+ G ++ A I IA QTNLLA+NAAIEAA AGE G+GFAVVA
Sbjct: 628 DTLVSSSGITQKISEESGSLLEASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVAD 687
Query: 356 EVRNLAEESKEAAEKIRGILNEIQEKVE------KAVEETEKGVKVVDDSVDFLKETVGY 409
E+R LAEES + I L + +++ KAVEE + + D V + ++
Sbjct: 688 EIRKLAEESSTQGKTITETLKTLSVEIDTLSTSSKAVEEQFDTIFRLSDQVRTMSRSLTE 747
Query: 410 LMNIGELLDDVESKLQDIKNELANTQEHVENAKKAL---ENLAASAQETTASAEEVSASA 466
M E D L IK+ A T + E + L E +A Q E++ S
Sbjct: 748 AMK--EQSDGSREVLAAIKSINAATVDVKEGSADMLKGGEVIAREMQRLDDLTSEIARSM 805
Query: 467 QEQASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
E A+ E+ + E+ +I ++ ++++ + E
Sbjct: 806 NEMAAGAIEINNAVHEVNEITQRSKQSISSLADE 839
>gi|10954934 Putative mcpA [Agrobacterium tumefaciens]
>gi|6498287|dbj|BAA87739.1| (AB016260) Putative mcpA
[Agrobacterium tumefaciens]
Length = 574
Score = 113 bits (281), Expect = 3e-24
Identities = 79/302 (26%), Positives = 145/302 (47%), Gaps = 29/302 (9%)
Query: 198 DLALTLESR-ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT 256
DLA +E L R+ ++ + A +++ A+ V+ A+ +EI + A T
Sbjct: 264 DLAQQIEKPFIPSLERLRTDFNAASDKLKRAMATVADNARAISAGSSEIRTAADELAKRT 323
Query: 257 QRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQV----EDIQDAMKVIRQAV---QEVA 309
++ ++EE + + E+ + ++ + E+A V E + + +V+R A+ ++
Sbjct: 324 EQQAASVEETAAALEEITTTVKDSSRRAEEAGQLVARTREHAEHSGEVVRDAIGAMDQIE 383
Query: 310 EMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
S+ + +II I +IA QTNLLALNA +EAARAGE G+GFAVVAQEVR LA+ S +AA+
Sbjct: 384 TSSREISNIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSAKAAK 443
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKN 429
+I+ ++ +V+ V K G L ++ +++ DI
Sbjct: 444 EIKTLITSSGSQVQSGVSLVTKA---------------------GSALQEIATQVHDINT 482
Query: 430 ELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKK 489
+ E AL + + ++ +A +EQ ++ + R L ++++
Sbjct: 483 NVVAIVEAAREQSNALGEINKAVNSVDQGTQQNAAMVEEQTAASHSLAREAAALFELLEH 542
Query: 490 LR 491
R
Sbjct: 543 FR 544
>sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MCP-III) (RIBOSE AND
GALACTOSE CHEMORECEPTOR PROTEIN) >gi|7428893|pir||QREC3M
methyl-accepting chemotaxis protein III - Escherichia
coli >gi|1742320|dbj|BAA15044.1| (D90781)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1742331|dbj|BAA15053.1| (D90782)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1787690|gb|AAC74503.1| (AE000239)
methyl-accepting chemotaxis protein III, ribose sensor
receptor [Escherichia coli K12]
>gi|4481751|gb|AAA81329.2| (K02073) Trg sensory
transducer protein [Escherichia coli]
Length = 546
Score = 113 bits (280), Expect = 4e-24
Identities = 81/339 (23%), Positives = 159/339 (46%), Gaps = 39/339 (11%)
Query: 137 FRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV 196
F + + V++ L+ +R+EKI+ GD++ + + + + + +++ +L + TV
Sbjct: 219 FMVLRRIVIRPLQHAAQRIEKIASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVGTV 278
Query: 197 RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT 256
R A + ++++ ++++S + A AI+Q
Sbjct: 279 RQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQ-------------------------- 312
Query: 257 QRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVG 316
T +ME+ + V + A ++A + D + + + + ++ SK +
Sbjct: 313 --TAASMEQLTATVKQNADNAHHASKLAQEASIKASDGGQTVSGVVKTMGAISTSSKKIS 370
Query: 317 DIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILN 376
+I I IA QTN+LALNAA+EAARAGE GRGFAVVA EVR LA S +AA++I G+++
Sbjct: 371 EITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIS 430
Query: 377 EIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQE 436
E ++ +E K + VD + ++ ++ ++ + + + +
Sbjct: 431 ESVRLIDLGSDEVATAGKTMSTIVD-------AVASVTHIMQEIAAASDEQSRGITQVSQ 483
Query: 437 HVENAKKALENLAASAQETTASAEEVSASAQEQASSMEE 475
+ K + A+ +E +A+A S +EQA+ + E
Sbjct: 484 AISEMDKVTQQNASLVEEASAAA----VSLEEQAARLTE 518
>pir||G82401 methyl-accepting chemotaxis protein VCA0923 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658359|gb|AAF96820.1| (AE004419) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 652
Score = 113 bits (279), Expect = 6e-24
Identities = 95/419 (22%), Positives = 179/419 (42%), Gaps = 98/419 (23%)
Query: 77 IVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEG 136
I VIS + + ++ M+P++ + +++A G+ ++ ++ D+E KL G
Sbjct: 307 IALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGE----GDLTQRLSTNTDEEFAKLAIG 362
Query: 137 FRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTV 196
F ++ + + L +I G S + + + +MR + L +L +
Sbjct: 363 FNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAE------AMRSQLHELEQLATAM 416
Query: 197 RDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT 256
++A T AN+ +S A + A DV
Sbjct: 417 HEMATTSSDVANNAQGAASAAKVADDAAAAG-------------------------TDVV 451
Query: 257 QRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVG 316
+T A++ S ++ + D +KV+ A + N+
Sbjct: 452 TKTTKAIDTLSATIDAAV---------------------DDVKVLESA-------TANIE 483
Query: 317 DIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILN 376
++ I DIA+QTNLLALNAAIEAARAGE GRGFAVVA EVR LA+ ++++ +IR +
Sbjct: 484 TVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNM-- 541
Query: 377 EIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQE 436
+E+ + G V ++ K+T +N
Sbjct: 542 ---------IEKLQSGANAVAVAMSHSKDTAASAVN------------------------ 568
Query: 437 HVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVE 495
+ A +ALE + + Q+ + +++++A+EQ+ EE+ N ++++D+ ++ E+ +
Sbjct: 569 QAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVAESAD 627
>pir||F81297 probable MCP-type signal transduction protein Cj1506c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968931|emb|CAB73927.1| (AL139078) putative MCP-type
signal transduction protein [Campylobacter jejuni]
Length = 700
Score = 112 bits (277), Expect = 1e-23
Identities = 84/315 (26%), Positives = 168/315 (52%), Gaps = 18/315 (5%)
Query: 122 IQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESIL-- 179
I+ R +DE+G + R I++++ + ++I E+ + + V ++ KG+ + +
Sbjct: 382 IEIRANDELGAM---GRIINENI-EKIQISLEQDQNAVDESVQTAREIE-KGNLTARITK 436
Query: 180 NSMRKTISNLRELMKTVRD-LALTLESRANDLTRI--SSEISEAINQVAEAIQQVSVEAQ 236
N + + L++++ + D L + S N++ R+ S + + +V A +V +
Sbjct: 437 NPINPQLVELKDVLNRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTN 496
Query: 237 RQQENITE-IMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQ 295
+ I + ++ N D+ ++ EE + ++ + E++ + VE+I
Sbjct: 497 ILGKEIKKMLLASSNFAKDLANQS----EELKNSMQKLADGSNAQASSLEQSAAAVEEIN 552
Query: 296 DAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 355
+M+ + EVA + ++ +I+N I DIAEQTNLLALNAAIEAARAGE GRGFAVVA
Sbjct: 553 SSMQNVSGKTVEVASQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVAD 612
Query: 356 EVRNLAEESKEAAEKIRGILNEIQE---KVEKAVEETEKGVKVVDDSVDFLKETVGYLMN 412
EVR LAE + ++ +I +N + + +V ++V+E G+ ++D++ L+ +
Sbjct: 613 EVRQLAERTGKSLSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVE 672
Query: 413 IGELLDDVESKLQDI 427
+ + +++ +++ I
Sbjct: 673 VANVTNNITNEVNQI 687
>pir||A82134 methyl-accepting chemotaxis protein VC1967 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656507|gb|AAF95115.1| (AE004272) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 684
Score = 112 bits (277), Expect = 1e-23
Identities = 89/350 (25%), Positives = 164/350 (46%), Gaps = 30/350 (8%)
Query: 133 LIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVH--AKGDFESILNSMRKTISNLR 190
L+ G+ ++Q +L ++ + ER+ ISEG+ L+V+ + +F + S K I ++
Sbjct: 345 LLLGWILVNQ-ILSPIQRLQERVTDISEGNGDLTLRVNITTQDEFGELGKSFDKFIEKIQ 403
Query: 191 ELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMN 250
L+ + ++ A DL+ +EA+N+ + +S N T M
Sbjct: 404 NLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTIS--------NATTAMTA-- 453
Query: 251 ITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAE 310
++ + + E S VL+I + + + + + + + Q + +
Sbjct: 454 ----ISSQVISGAREIS---QSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINS 506
Query: 311 MSKNVGDIINAIADI---AEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEA 367
+ +V I +ADI AEQTNLLALNAAIEAARAGE GRGFAVVA EVR+L
Sbjct: 507 LKNHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSL------- 559
Query: 368 AEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDI 427
A + +G N IQ+ + + ++ V+V+++S+ +T E L V ++ +
Sbjct: 560 ATRTQGSTNTIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRL 619
Query: 428 KNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVK 477
T E + + ++++ ++A+S A + Q+ ++ +K
Sbjct: 620 TQMNQQTSEAITHQEQSVTSIASSLSHLQALCQSAQEKIQQSEHTISALK 669
>gb|AAG34156.1|AF312878_1 (AF312878) methyl-accepting chemotaxis protein McpW [Sinorhizobium
meliloti]
Length = 689
Score = 111 bits (275), Expect = 2e-23
Identities = 99/377 (26%), Positives = 178/377 (46%), Gaps = 43/377 (11%)
Query: 97 INEMAKIAE----SIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIIT 152
I EMA+ E S E + + R S+ Q E + E +AI + +E +
Sbjct: 252 IGEMARSVELFRVSAIEKRALKERARASR-QETETERERHETEREQAIGL-INTAVEALG 309
Query: 153 ERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTR 212
+ ++++G+++ ++ G +++ T+ L +++ +V++ ++ES +
Sbjct: 310 GALNQLADGNLAVAIREPFDGGLDALRRDFNDTVERLSQVLSSVKENTASIESNGRQMRS 369
Query: 213 ISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNE 272
+ +++ + A +++Q S + IT V T A EE S +V+E
Sbjct: 370 AADDLARRTEKQAASLEQTSAALEE-------------ITVTVKTATERA-EEASHMVDE 415
Query: 273 VLSIARE-GKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNL 331
A E G+ GE AI+ + I+ A S +G II+ I +IA QTNL
Sbjct: 416 TRINAEESGRIVGE-AIAAMARIEGA--------------SSEIGKIIDVIDEIAFQTNL 460
Query: 332 LALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEK 391
LALNA +EAARAGE G+GFAVVAQEVR LA+ + AA+ I+ + V ++ E +
Sbjct: 461 LALNAGVEAARAGEAGKGFAVVAQEVRELAQRAAGAAKDIKAL-------VSRSGNEVKT 513
Query: 392 GVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAAS 451
GV++V ++ D L + I E + + ++ L V + + AA
Sbjct: 514 GVRLVQETGDALGRIGAKVACINEHMSSIVMAAREQSTGLREINTAVAQLDQMTQQNAAM 573
Query: 452 AQETTASAEEVSASAQE 468
++T A++ ++ A++
Sbjct: 574 VEQTNAASHTLAQDAEK 590
>pir||T03424 probable methylation accepting chemotaxis protein mcpA -
Agrobacterium tumefaciens plasmid pTiC58
>gi|3153186|gb|AAC17211.1| (AF010180) McpA
[Agrobacterium tumefaciens]
Length = 579
Score = 111 bits (274), Expect = 2e-23
Identities = 78/302 (25%), Positives = 144/302 (46%), Gaps = 29/302 (9%)
Query: 198 DLALTLESR-ANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT 256
DLA +E L R+ ++ + A +++ A+ V+ A+ +EI + A T
Sbjct: 264 DLAQQIEKPFIPSLERLRTDFNAASDKLKRAMATVADNARAISAGSSEIRTAADELAKRT 323
Query: 257 QRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQV----EDIQDAMKVIRQAV---QEVA 309
++ ++EE + + E+ + ++ + E+A V E + + +V+R A+ ++
Sbjct: 324 EQQAASVEETAAALEEITTTVKDSSRRAEEAGQLVARTREHAEHSGEVVRDAIGAMDQIE 383
Query: 310 EMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
S+ + +II I +IA QTN LALNA +EAARAGE G+GFAVVAQEVR LA+ S +AA+
Sbjct: 384 TSSREISNIIGVIDEIAFQTNHLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSAKAAK 443
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKN 429
+I+ ++ +V+ V K G L ++ +++ DI
Sbjct: 444 EIKTLITSSGSQVQSGVSLVTKA---------------------GSALQEIATQVHDINT 482
Query: 430 ELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKK 489
+ E AL + + ++ +A +EQ ++ + R L ++++
Sbjct: 483 NVVAIVEAAREQSNALGEINKAVNSVDQGTQQNAAMVEEQTAASHSLAREAAALFELLEH 542
Query: 490 LR 491
R
Sbjct: 543 FR 544
>emb|CAB93675.1| (AJ404229) putative receptor protein [Rhodobacter sphaeroides]
Length = 553
Score = 109 bits (269), Expect = 8e-23
Identities = 85/360 (23%), Positives = 152/360 (41%), Gaps = 70/360 (19%)
Query: 140 ISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDL 199
I+ + L + ++++ GD+S + + +L S + LRE++ V +
Sbjct: 206 ITMSIAGGLRRALDLSKRVAAGDLSAQADARGRDEIAELLKSNNLMVEKLREVVGGVSSV 265
Query: 200 ALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRT 259
A + S + ++ S ++S+ ++ A A ++ S ++ NI + + T + +
Sbjct: 266 ARQVSSGSGEMAATSEQLSQGASEQASATEEASASVEQMAANIKQAADNAMQTERIASKA 325
Query: 260 VDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDII 319
A + + G AV+E +++ D I
Sbjct: 326 -----------------AEDARASGA------------------AVEEAVGAMRSIADKI 350
Query: 320 NAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQ 379
+ +IA QT+LLALNAA+EAARAGE GRGFAVVA EVR LAE S+ AA +I +
Sbjct: 351 MMVQEIARQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQAAAAEISQL----- 405
Query: 380 EKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVE 439
S ++ G + +L+ D+E NT V
Sbjct: 406 -------------------SAGTVRAATGAGEMLNQLVPDIE-----------NTSRLVT 435
Query: 440 NAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIKV 499
+ A LAA AQ+ + +++ Q+ +S+ +++ EL ++L V F ++
Sbjct: 436 DISVASRELAAGAQQVATAIQQLDKVTQQNSSASQQLAGGANELSGQAEQLEATVSFFRL 495
>pir||H70184 methyl-accepting chemotaxis protein (mcp-5) homolog - Lyme disease
spirochete >gi|2688620|gb|AAC67036.1| (AE001169)
methyl-accepting chemotaxis protein (mcp-5) [Borrelia
burgdorferi]
Length = 636
Score = 108 bits (266), Expect = 2e-22
Identities = 92/331 (27%), Positives = 153/331 (45%), Gaps = 58/331 (17%)
Query: 171 AKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQ 230
A G+F + +N + L L + + L S A + + E Q+A A Q
Sbjct: 362 ASGNFTADINFGKWDTVELYSLYEGLEQLRTNFSSVAKGVIENLDYLYENAIQIANASQN 421
Query: 231 VSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEK-AIS 289
+S A Q + ++ TA++ Q +++ +S E EK A++
Sbjct: 422 LSSGAVEQASTLEQM------TANIEQ------------ISQGVSENTENAATTEKIAVN 463
Query: 290 QVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRG 349
E ++ K + +A++ + +++ +G I +I QTNLLALNA+IEAAR GE G+G
Sbjct: 464 TNERTKEGHKSVVKAIEAMTVITEKIG----IIDEITRQTNLLALNASIEAARVGEKGKG 519
Query: 350 FAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGY 409
F VVA EVR LA++SKE+A +I I N +A E E+ V ++ + +K
Sbjct: 520 FEVVAAEVRKLADQSKESAREIIDIANRSLTVASRAGENFEQIVPGMEQTARLVK----- 574
Query: 410 LMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQ 469
+I NE +E K A+E ++ Q T +S+EE+SA +++
Sbjct: 575 ----------------NISNESYKQSVQIEQFKNAIEQVSQLVQTTASSSEELSAMSEKM 618
Query: 470 ASSMEEVKRNIIELRDIVKKLREAVEFIKVE 500
S VK L+E+V++ K+E
Sbjct: 619 LES--------------VKDLKESVDYFKIE 635
>pir||E81444 probable methyl-accepting chemotaxis signal transduction protein
Cj0262c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6967739|emb|CAB72730.1| (AL139074) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 665
Score = 107 bits (265), Expect = 2e-22
Identities = 92/375 (24%), Positives = 185/375 (48%), Gaps = 34/375 (9%)
Query: 74 VMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAE--GKLSRAREMVSKIQYREDDEIG 131
++ I+A+I + +R + S R ++ +A I + ++ + VS I+ + +DE G
Sbjct: 299 IVGIIAIIIALILIRFLIS--RSLSPLAAIQTGLTSFFDFINYKTKNVSTIEVKSNDEFG 356
Query: 132 KLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRE 191
++ AI++++L T + + + + E + V G+ + + + + L E
Sbjct: 357 QISN---AINENILATKRGLEQDNQAVKES--VQTVSVVEGGNLTARITANPRN-PQLIE 410
Query: 192 LMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENIT-------- 243
L + L L++R + S+++ AI+++ E + S++ + + EN +
Sbjct: 411 LKNVLNKLLDVLQAR------VGSDMN-AIHKIFEEYK--SLDFRNKLENASGSVELTTN 461
Query: 244 ----EIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMK 299
EI++ + ++D + + V + + + E+ + +E+I +M+
Sbjct: 462 ALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQ 521
Query: 300 VIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRN 359
+ +V S+ + ++ I DIA+Q NLLALNAAIEAARAGE GRGFAVVA EVR
Sbjct: 522 NVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRK 581
Query: 360 LAEESKEAAEKIRGILNEIQEKVE---KAVEETEKGVKVVDDSVDFLKETVGYLMNIGEL 416
LAE ++++ +I N + + + ++++E G+ ++DSV + +T + I
Sbjct: 582 LAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTTKDNVEIANE 641
Query: 417 LDDVESKLQDIKNEL 431
+ S + DI N +
Sbjct: 642 SAIISSTVSDIANNI 656
>pir||H81431 methyl-accepting chemotaxis signal transduction protein Cj0144
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967638|emb|CAB72628.1| (AL139074) methyl-accepting
chemotaxis signal transduction protein [Campylobacter
jejuni]
Length = 659
Score = 106 bits (263), Expect = 4e-22
Identities = 91/394 (23%), Positives = 192/394 (48%), Gaps = 31/394 (7%)
Query: 53 IRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKL 112
+ E +E ++ + + ++ ++ ++IS L +++ + P+ + S + +
Sbjct: 273 VGEPIEQIEAPVYKIAFIQTAIVIFTSIISVILLYFIVSKYLSPLAAIQTGLTSFFDF-I 331
Query: 113 SRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAK 172
+ + VS I+ + +DE G++ AI++++L T + + + + E + V
Sbjct: 332 NYKTKNVSTIEVKSNDEFGQISN---AINENILATKRGLEQDNQAVKES--VQTVSVVEG 386
Query: 173 GDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVS 232
G+ + + + + L EL + L L++R + S+++ AI+++ E + S
Sbjct: 387 GNLTARITANPRN-PQLIELKNVLNKLLDVLQAR------VGSDMN-AIHKIFEEYK--S 436
Query: 233 VEAQRQQENIT------------EIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREG 280
++ + + EN + EI++ + ++D + + V + + +
Sbjct: 437 LDFRNKLENASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQ 496
Query: 281 KDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEA 340
E+ + +E+I +M+ + +V S+ + ++ I DIA+Q NLLALNAAIEA
Sbjct: 497 AQSLEETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEA 556
Query: 341 ARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVE---KAVEETEKGVKVVD 397
ARAGE GRGFAVVA EVR LAE ++++ +I N + + + ++++E G+ ++
Sbjct: 557 ARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQIN 616
Query: 398 DSVDFLKETVGYLMNIGELLDDVESKLQDIKNEL 431
DSV + +T + I + S + DI N +
Sbjct: 617 DSVAQIDQTTKDNVEIANESAIISSTVSDIANNI 650
>pir||B81251 probable methyl-accepting chemotaxis signal transduction protein
Cj1564 [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6968981|emb|CAB73552.1| (AL139079) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 662
Score = 105 bits (259), Expect = 1e-21
Identities = 94/394 (23%), Positives = 190/394 (47%), Gaps = 31/394 (7%)
Query: 53 IRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKL 112
I E+ + + + ++ V+ IV V S L +++ + P+ + S + +
Sbjct: 276 ITESADIINKPIYKAAFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDF-I 334
Query: 113 SRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAK 172
+ + VS I+ + +DE G++ AI++++L T + + + + E + V
Sbjct: 335 NYKTKNVSTIEVKSNDEFGQISN---AINENILATKRGLEQDNQAVKES--VQTVSVVEG 389
Query: 173 GDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVS 232
G+ + + + + L EL + L L++R + S+++ AI+++ E + S
Sbjct: 390 GNLTARITANPRN-PQLIELKNVLNKLLDVLQAR------VGSDMN-AIHKIFEEYK--S 439
Query: 233 VEAQRQQENIT------------EIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREG 280
++ + + EN + EI++ + ++D + + V + + +
Sbjct: 440 LDFRNKLENASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQ 499
Query: 281 KDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEA 340
E+ + +E+I +M+ + +V S+ + ++ I DIA+Q NLLALNAAIEA
Sbjct: 500 AQSLEETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEA 559
Query: 341 ARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVE---KAVEETEKGVKVVD 397
ARAGE GRGFAVVA EVR LAE ++++ +I N + + + ++++E G+ ++
Sbjct: 560 ARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQIN 619
Query: 398 DSVDFLKETVGYLMNIGELLDDVESKLQDIKNEL 431
DSV + +T + I + S + DI N +
Sbjct: 620 DSVAQIDQTTKDNVEIANESAIISSTVSDIANNI 653
>pir||E83032 probable chemotaxis transducer PA4915 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951192|gb|AAG08300.1|AE004904_8 (AE004904) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 104 bits (258), Expect = 2e-21
Identities = 89/340 (26%), Positives = 150/340 (43%), Gaps = 39/340 (11%)
Query: 181 SMRKTISNLRELMKTVRDLA-LTLESRANDLTRISS---------EISEAI-NQVAEAIQ 229
S+ + +S+LR +++ V+D + LTL + A +S E +A+ +AE +
Sbjct: 212 SIMRPLSDLRGVIRRVQDSSNLTLRADARGRDEVSDTARAFNMMLESQQALLRHLAETAR 271
Query: 230 QVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAIS 289
++++ + ++ D T A+ + S V +V A+ E A S
Sbjct: 272 KLTITSDEMSAISNQVSHVATSQGDQTDMVATAVHQMSMAVQDVARNAQAAAASAESANS 331
Query: 290 QVEDIQDAMKVIRQAVQEVAEMSKNVGDIINA--------------IADIAEQTNLLALN 335
+ + A+Q ++ M G +I+ I +IA+QTNLLALN
Sbjct: 332 EAHTGTGLVHANLDAIQGLSVMVGEAGAVIDTLRNKTDEISTVLEVIQNIAQQTNLLALN 391
Query: 336 AAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKV 395
AAIEAARAGE GRGFAVVA EVR+LA + +A E IR ++ +Q AV ++ +
Sbjct: 392 AAIEAARAGEAGRGFAVVADEVRSLATNTHKATETIREMIEALQAGASSAVSVMQQSREQ 451
Query: 396 VDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQET 455
SV E L I + ++ + I A E A+A E
Sbjct: 452 AQVSVQRAHEAGKALGLIAQAVEGIAQSNAQIST--------------ATEEQTATASEV 497
Query: 456 TASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVE 495
+ + + ++AS E A + + +EL + L + ++
Sbjct: 498 SQNIDSLNASIGEVAEGAVKTSTSSVELAKLANGLEQQIQ 537
>pir||B64530 methyl-accepting chemotaxis transducer (tlpC) - Helicobacter pylori
(strain 26695) >gi|2313163|gb|AAD07152.1| (AE000530)
methyl-accepting chemotaxis transducer (tlpC)
[Helicobacter pylori 26695]
Length = 673
Score = 101 bits (249), Expect = 2e-20
Identities = 94/400 (23%), Positives = 190/400 (47%), Gaps = 59/400 (14%)
Query: 59 NAKSQLKETLWLSIGVMSIVA--VISGALGMRL--MNSTMRPINEMAKIAESIAEGKLS- 113
N K + TL L + V++ + ++S + R+ +N+T+ + ++ L+
Sbjct: 297 NTKFIIITTLILGVLVLAFLVFIIVSNLITKRISRVNNTLNDFFNLLNNPKNNHAISLTP 356
Query: 114 -RAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAK 172
A + + ++Q ++ I K E +A ++ + ++E+ + GD + ++ K
Sbjct: 357 PSAYDEIGQMQASINENILKTQESIQADNKAIQNSIEVTNY----VENGDFTQEIACVPK 412
Query: 173 G-DFESILNSMRKTISNLR-ELMKTVRDLALTLESRAN------------DLTRISSEIS 218
D +++ N++ I R ++ + L LE N ++ + + +
Sbjct: 413 NKDLQALRNTINSIIQYFRNQIGANIESLNNALEHYKNLDFTHHIQNPKANMEKALNTLG 472
Query: 219 EAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQR----TVDAMEEFSGVVNEVL 274
+ I+ + +A + + +++ ++ + TA +R T ++EE + ++ +
Sbjct: 473 QEISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEITNIITTID 532
Query: 275 SIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLAL 334
S K ++ ISQ EDI+ + +IR DIA+QTNLLAL
Sbjct: 533 S-------KSQEMISQGEDIKSVVDMIR---------------------DIADQTNLLAL 564
Query: 335 NAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKV---EKAVEETEK 391
NAAIEAARAGE GRGFAVVA EVR LAE ++++ +I +N + + + ++++ K
Sbjct: 565 NAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADNAESIKMQNK 624
Query: 392 GVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNEL 431
GV+ + +S++ L++ V + I V +K+ I ++
Sbjct: 625 GVENIHNSINALQQDVQDNLTIANHSLQVSTKIDGISQDI 664
>pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154575|gb|AAD05650.1| (AE001446)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 673
Score = 101 bits (249), Expect = 2e-20
Identities = 90/382 (23%), Positives = 183/382 (47%), Gaps = 23/382 (6%)
Query: 59 NAKSQLKETLWLSIGVMSIVA--VISGALGMRL--MNSTMRPINEMAKIAESIAEGKLS- 113
N K + TL L + V++ + +IS + R+ +N+T+ + ++ L+
Sbjct: 297 NTKFIIITTLILGVLVLAFLVFIIISNLITKRISRVNNTLNDFFNLLNNPKNNHAISLTP 356
Query: 114 -RAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAK 172
A + + ++Q ++ I K E +A ++ + ++E+ + GD + ++ K
Sbjct: 357 PSAYDEIGQMQASINENILKTQESIQADNKAIQNSIEVTNY----VENGDFTQEIACVPK 412
Query: 173 GDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVS 232
L ++R TI+++ + + + +ES N L + Q +A + +
Sbjct: 413 N---KDLQALRNTINSIIQYFRN--QIGADIESLNNALEHYKNLDFTHHIQNPKANMEKA 467
Query: 233 VEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVE 292
+ Q EI + + ++ V+ + A + + + +E
Sbjct: 468 LNTLGQ-----EISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLE 522
Query: 293 DIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAV 352
+I + + +I QE+ +++ +++ I DIA+QTNLLALNAAIEAARAGE GRGFAV
Sbjct: 523 EITNIITMIDSKSQEMISQGEDIKSVVDMIRDIADQTNLLALNAAIEAARAGEHGRGFAV 582
Query: 353 VAQEVRNLAEESKEAAEKIRGILNEIQEKV---EKAVEETEKGVKVVDDSVDFLKETVGY 409
VA EVR LAE ++++ +I +N + + + ++++ KGV+ + +S++ L++ V
Sbjct: 583 VADEVRKLAERTQKSLSEIEANINILVQSIADNAESIKMQNKGVENIHNSINALQQDVQD 642
Query: 410 LMNIGELLDDVESKLQDIKNEL 431
+ I V +K+ I ++
Sbjct: 643 NLTIANHSLQVSTKIDGISQDI 664
>pir||B71975 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154599|gb|AAD05672.1| (AE001448)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 675
Score = 101 bits (249), Expect = 2e-20
Identities = 80/327 (24%), Positives = 155/327 (46%), Gaps = 28/327 (8%)
Query: 119 VSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEG-DVSDDLKVH------- 170
+ ++ R +DE+G++ AI++++LQT + + E + + + V D+K
Sbjct: 354 IKLVEARSNDELGRMQT---AINKNILQTQKTMQEDRQAVQDTIKVVSDVKAGNFAVRIT 410
Query: 171 ---AKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEA 227
A D + + +++ + L+E + T + + L I A +V
Sbjct: 411 AEPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESYSGLD-FRGRIQNASGRVELV 469
Query: 228 IQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKA 287
+ E Q+ E + + + + + V +E+ S ++ L +
Sbjct: 470 TNALGQEIQKMLETSSNFAKDLANDSANLKECVQNLEKASNSQHKSLM----------ET 519
Query: 288 ISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELG 347
+E+I +++ + + + E K++ I+ I DIA+QTNLLALNAAIEAARAGE G
Sbjct: 520 SKTIENITTSIQGVSSQSEAMIEQGKDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHG 579
Query: 348 RGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDD---SVDFLK 404
RGFAVVA EVR LAE ++++ +I +N + + + E + VK V++ S++ L+
Sbjct: 580 RGFAVVADEVRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALR 639
Query: 405 ETVGYLMNIGELLDDVESKLQDIKNEL 431
+ I ++ ++ + N++
Sbjct: 640 SVTEGNLKIASDSLEISQEIDKVSNDI 666
>pir||C64532 methyl-accepting chemotaxis protein (tlpA) - Helicobacter pylori
(strain 26695) >gi|2313179|gb|AAD07167.1| (AE000531)
methyl-accepting chemotaxis protein (tlpA) [Helicobacter
pylori 26695]
Length = 675
Score = 101 bits (248), Expect = 2e-20
Identities = 80/327 (24%), Positives = 156/327 (47%), Gaps = 28/327 (8%)
Query: 119 VSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEG-DVSDDLKVH------- 170
+ I+ + +DE+G++ AI++++LQT +I+ E + + + V D+K
Sbjct: 354 IKLIEAKSNDELGRMQT---AINKNILQTQKIMQEDRQAVQDTIKVVSDVKAGNFAVRIT 410
Query: 171 ---AKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEA 227
A D + + +++ + L+E + T + + L I A +V
Sbjct: 411 AEPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESYSGLD-FRGRIQNASGRVELV 469
Query: 228 IQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKA 287
+ E Q+ E + + + + + V +E+ S ++ L +
Sbjct: 470 TNALGQEIQKMLETSSNFAKDLANDSANLKECVQNLEKASNSQHKSLM----------ET 519
Query: 288 ISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELG 347
+E+I +++ + + + E +++ I+ I DIA+QTNLLALNAAIEAARAGE G
Sbjct: 520 SKTIENITTSIQGVSSQSEAMIEQGQDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHG 579
Query: 348 RGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDD---SVDFLK 404
RGFAVVA EVR LAE ++++ +I +N + + + E + VK V++ S++ L+
Sbjct: 580 RGFAVVADEVRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALR 639
Query: 405 ETVGYLMNIGELLDDVESKLQDIKNEL 431
+ I ++ ++ + N++
Sbjct: 640 SVTEGNLKIASDSLEISQEIDKVSNDI 666
>gb|AAF61289.1|AF064528_2 (AF064528) phototransducer; methyl-accepting chemotaxis protein;
Ptr [Rhodospirillum centenum (Rhodocista centenaria)]
Length = 671
Score = 100 bits (246), Expect = 4e-20
Identities = 112/479 (23%), Positives = 200/479 (41%), Gaps = 87/479 (18%)
Query: 18 VVLTAIIIQNIAISDLYDNLEKTM--KVVQTGGSVEAIRETLE-NAKSQLKETLWLSIGV 74
+++TA ++ I+D D L T+ + GSV A + ++ A+S ++ + +
Sbjct: 245 LLVTATEERDSRITDGMDRLGATVLSDLAAAVGSVVAKQTAIDPKAESTIEGGITMIAAA 304
Query: 75 MSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLI 134
+ V+S LG+ L PI + +A G + V + DEIG++
Sbjct: 305 AVLCLVLSTLLGLLLGRIISTPIVGLTATMRRLATGDTN-----VDISGQKRKDEIGEMG 359
Query: 135 EGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMK 194
+++ + E+ D K A+ + ++ L + +
Sbjct: 360 RAVAVFRDGLIERQRLRIEQ----------DRAKQRAEEERKAALTRLADSFE------A 403
Query: 195 TVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITAD 254
VR + + A+ + + E+S A Q + + V+ + + N+
Sbjct: 404 GVRGVVTEVSGMAHHIQDNAGELSAAARQTSSQAEVVAAASGQASNNV------------ 451
Query: 255 VTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKN 314
Q + EE S + E I R+ + E+A + Q A + V+ +A +
Sbjct: 452 --QTVAASAEELSASIAE---IGRQVQRSSERAQAATGMAQGA----NEQVEALAAQADA 502
Query: 315 VGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGI 374
+G ++ I++IA QTNLLALNA IEAARAGE G+GFAVVA EV++LA ++ A E I
Sbjct: 503 IGSVVQLISEIAAQTNLLALNATIEAARAGEAGKGFAVVAGEVKSLASQTARATEDIGRQ 562
Query: 375 LNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANT 434
+ +Q+ TV + I ++ ++ NE+A
Sbjct: 563 IARMQQASH---------------------GTVSAIRGIAGMITEM--------NEIA-- 591
Query: 435 QEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREA 493
+AA+ Q+ A+ E+S S Q+ AS EE+ R+I ++R + A
Sbjct: 592 -----------AGIAAAVQQQAAATGEISRSVQQAASGTEEIDRSIGDVRSAADRTGRA 639
>pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) - syphilis
spirochete >gi|1354776|gb|AAB01990.1| (U56999) MCP-1
[Treponema pallidum] >gi|3322296|gb|AAC65035.1|
(AE001189) methyl-accepting chemotaxis protein (mcp1)
[Treponema pallidum]
Length = 597
Score = 100 bits (246), Expect = 4e-20
Identities = 77/330 (23%), Positives = 147/330 (44%), Gaps = 15/330 (4%)
Query: 176 ESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEA 235
E + +R+T L + + + E DLTR + + E + E Q V
Sbjct: 241 ERLFGEVRRTAQELSHNEQNLTETMDRAEQVVQDLTRYTGAVREELAVQGEGFSQTRVVN 300
Query: 236 QRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQ 295
+ ++ E+ E M + + ++A+E V+ + E + + +
Sbjct: 301 EELGSSLRELDEQMEAQGERAREALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGK 360
Query: 296 DAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 355
+ + + + ++E+ S+ + + DI+ +TNLLA+NAAIEAA AG+ GRGFAVVA
Sbjct: 361 ECVGRMMEVIEEITSRSRGLAVTNALVVDISGRTNLLAMNAAIEAAHAGDAGRGFAVVAG 420
Query: 356 EVRNLAEESKEAAEKIRGILNEIQEKVEKAVEET---EKGVK--------VVDDSVDFLK 404
E+R+LA ++ AAE G ++ +++E + E+ GV VD L
Sbjct: 421 EIRSLA--ARTAAES--GATGKMLKEIEAVIGESGHASAGVAQSFTDIRGKVDGFSTILA 476
Query: 405 ETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSA 464
+ G + +GE + +++ + +L +E + + AA A+ T A++V A
Sbjct: 477 DISGAVQVVGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCA 536
Query: 465 SAQEQASSMEEVKRNIIELRDIVKKLREAV 494
+ ++E + + R + RE +
Sbjct: 537 EVETMIGNVEVLTEVVARTRAVELHTREVI 566
>pir||H72552 hypothetical protein APE1708 - Aeropyrum pernix (strain K1)
>gi|5105396|dbj|BAA80709.1| (AP000062) 791aa long
hypothetical protein [Aeropyrum pernix]
Length = 791
Score = 81.5 bits (198), Expect = 2e-14
Identities = 113/524 (21%), Positives = 229/524 (43%), Gaps = 68/524 (12%)
Query: 4 GKKLVISIFTPLILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSV-EAIRETLENAKS 62
G ++ ++ + L ++L I++++A S T + G V +A+ + + A+
Sbjct: 222 GGEVEAALDSALSGILLARSILESVAAS--------TSTLGDHGSGVGKAVVQKIMEARL 273
Query: 63 QLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSK- 121
Q E ++ +G + I G G L + E K+ E AE L++ARE + +
Sbjct: 274 QKLEAIYQEVGAK--IEAIKGEYGAELDQNP-----EAQKLLEE-AEEALAKARERLDRA 325
Query: 122 -IQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILN 180
I +E ++G+++ A +Q L + + E I + + + E+ +
Sbjct: 326 YILLQEGAKVGEVMREI-ARAQGYLSKAQALASAAEVILLSGPTTETGTAVETATETTIT 384
Query: 181 SMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQE 240
++ T + E + LA +LT + EI E + ++ E +QQ + A
Sbjct: 385 TITTTTTREAEETEAAEVLA--------ELTEVEIEIGELMEEL-ETLQQKAASA----- 430
Query: 241 NITEIMEGMNITADVTQRTVDAMEEFSGVVNEV-LSIAREGKDKGEKAISQVEDIQDAMK 299
N E+ E ++ + R + E +++E ++ A+E + E A+ + + D +
Sbjct: 431 NQGEVQEILDEAGALIDRASSLLAEARSLLDEGRIAEAKEKIAQAEAALEKADSKLDTAE 490
Query: 300 VIRQAVQEVAEMSKN-VGDIINAIADIAEQTNLLA---------------------LNAA 337
I + V+E AE ++ + + A+A + L A L AA
Sbjct: 491 AILEVVEEYAERAREAIEEAEEALAKAEAKLQLAAQLSGSEAVEEALNRLEEAKEKLEAA 550
Query: 338 IEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVD 397
EA G G V+A+E ++AEE+KE AEK + QE V + + + E+ + V
Sbjct: 551 KEAYSNGRYGEAI-VLAEEAASIAEEAKELAEK---AIEAAQEAVSEVLNQVEELLDRVK 606
Query: 398 DSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKK-ALENLAASAQETT 456
D + +++ G L +++++ + ++ +L + +E A A E A++
Sbjct: 607 DLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLLEEADSLAKEGDIDGARQKL 666
Query: 457 ASAEEVSASAQEQASSMEEVKRNIIE--LRDIVKKLREAVEFIK 498
A +V E+A SM R+++E + D++ +LR +E ++
Sbjct: 667 GEARDVI----EEAVSMVRDIRSMVEQAIGDLIDELRRLIEELR 706
>pir||D70174 methyl-accepting chemotaxis protein (mcp-3) homolog - Lyme disease
spirochete >gi|2688521|gb|AAC66954.1| (AE001161)
methyl-accepting chemotaxis protein (mcp-3) [Borrelia
burgdorferi]
Length = 735
Score = 81.1 bits (197), Expect = 2e-14
Identities = 76/323 (23%), Positives = 147/323 (44%), Gaps = 38/323 (11%)
Query: 210 LTRISSEIS--EAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFS 267
L +I + IS E+I+ +Q+ R +++I +I++G AD + E S
Sbjct: 414 LEQIETAISNTESIDSSILVYEQLRDTFSRFEKSIVDILKGFESIADPINDHNKYISEIS 473
Query: 268 GVVNEVLS--------------IAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSK 313
E +S +A E S+V D+ + + + ++ +
Sbjct: 474 SNFEESVSFFYSIDKNLEIFNKVATINSTDIENIKSKVFDLNIVFENVNKNFADLLSQTN 533
Query: 314 NVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRG 373
++ + + I+ QTN+LA+NAAIEAA+AG+ G+ FAVVA+E+R LA S + ++ I+
Sbjct: 534 SLQSVNKLLVSISAQTNMLAMNAAIEAAKAGDAGKSFAVVAEEIRKLAINSGKYSKTIKD 593
Query: 374 ILNEIQE---KVEKAVEETEKGVKVVDDSVD--FLKE------TVGYLMNIGELLD---D 419
L + + ++ K + D+VD F + + IGE +
Sbjct: 594 ELKTVDSIIAVINSEIDTIYKNFIDIQDNVDNNFSRHEKVDLTLAKHFKEIGEFKERYLS 653
Query: 420 VESKLQDIKN---ELANTQEHVENAKKALENLAASAQETTASAEEVSA--SAQEQASSME 474
++K++D KN E+ N + N + +E S + A S QE +S ++
Sbjct: 654 HDTKIRDAKNMYKEIFNNHYFISG---KFNNFSQDLKEFKVSKMNLDAVSSLQEYSSLVK 710
Query: 475 EVKRNIIELRDIVKKLREAVEFI 497
K I++ +++++K+ + ++ I
Sbjct: 711 SSKDKILKTKELIQKINDEIKDI 733
>dbj|BAA96489.1| (AB039333) chemotactic transducer CtpL [Pseudomonas aeruginosa]
Length = 632
Score = 78.8 bits (191), Expect = 1e-13
Identities = 66/258 (25%), Positives = 115/258 (43%), Gaps = 35/258 (13%)
Query: 111 KLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISE------GDVS 164
+L R+ ++ ++ + E +L R I ++ + +I ++ + G +
Sbjct: 278 RLDAVRQALATLEPQVRGERQRLQGQVRLIQGGMIALILLIALAIDSLQRRLARVLGQLV 337
Query: 165 DDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQV 224
L A GDF + S+R +LR L + L R+ S ++E + +
Sbjct: 338 PALSAWADGDFSRPI-SLRTRTEDLRNL--------------EDSLNRLRSFLAELVGAI 382
Query: 225 AEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKG 284
+QV+ +Q E + + G+ A T + DA+ + + +V A + D
Sbjct: 383 HRRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDALGDMEAAIQQVAGDASQTADAS 442
Query: 285 EKAISQVE--------------DIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTN 330
A VE ++ D ++ Q+++ +AE S +G ++ I IAEQTN
Sbjct: 443 RSAGQAVEHGQRVIGESLGGLRELVDEVQGNAQSIERLAEESATIGSVLTVIRSIAEQTN 502
Query: 331 LLALNAAIEAARAGELGR 348
LLALNAAIEAARAG+ GR
Sbjct: 503 LLALNAAIEAARAGDQGR 520
>gb|AAF78287.1|AF099662_1 (AF099662) merozoite surface protein 3b [Plasmodium vivax]
Length = 697
Score = 76.1 bits (184), Expect = 8e-13
Identities = 100/418 (23%), Positives = 178/418 (41%), Gaps = 58/418 (13%)
Query: 105 ESIAEGKLSRAREMVSKIQYR--------EDDEIGKLIEGFRAISQDVLQTLEIITE--R 154
E AE K+ A+E V+K + E ++ K E + + D L+ + + TE
Sbjct: 80 EKSAEPKV-HAQEEVNKESLKSKAQNAKAEAEKAAKAAESAKKNTLDALEKVNVPTELNN 138
Query: 155 MEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRIS 214
++K +E ++ K E+I K ++ + ++ L ++ A ++
Sbjct: 139 VKKFAESAATEAQKQ------ENIATEAEKKVAEANGEVVELQKLKDEVDKAAKKAKQL- 191
Query: 215 SEISEAINQVAEAIQQVSVEAQRQQENITEIME------GMNITADVTQRTVDAMEEFSG 268
++ I + A Q EA++ Q++ T E G + + +VT+ A +E
Sbjct: 192 -QLKAEIAEHAVKAQVAKTEAEKAQKDATTAKEVAIKETGTSKSENVTKAIDMAKKEEEE 250
Query: 269 VVNEVLSIAREGKDKGEKAISQV--EDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIA 326
N+ SIA E DK KA + ++I+D K I Q E+ ++ GDI+N + ++A
Sbjct: 251 TKNQA-SIASENADKAAKAAQEEVKKEIKDENKEISQLENEITKL----GDILNTVKELA 305
Query: 327 EQTNLLALNA---AIEAARAGELGRG--FAVVAQEVRNLAEESKEAAEKIRGILNEIQEK 381
+ NA ++A A E+ + + A+ LAE++K+ AEKI + +
Sbjct: 306 SNAEDASKNAKKEMVKAQIAAEVAKAEKAKIEAENANFLAEKAKQTAEKIA----KTSKS 361
Query: 382 VEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVEN- 440
EK EE K + + D + E DV S+ Q K L + ++ E+
Sbjct: 362 TEKITEEVRKATEFAKTAGDATTQAA------TEAAGDVSSEEQKQKVLLESIKQKAESA 415
Query: 441 ---------AKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKK 489
AK EN A+E AE AQ+ A+S +E K +++ + V K
Sbjct: 416 LQASKDAIKAKTEAENFLEIAKE-VPKAEAAKEEAQKAATSADEAKTEALKIAEEVNK 472
>emb|CAB40350.1| (AJ131892) Hyperion protein, 419 kD isoform [Gallus gallus]
Length = 3616
Score = 74.9 bits (181), Expect = 2e-12
Identities = 91/508 (17%), Positives = 228/508 (43%), Gaps = 56/508 (11%)
Query: 32 DLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMN 91
D+ D+LE+ +++ TG ++ LE + Q++E L + +G + +L+
Sbjct: 1644 DVIDHLEQ--ELLCTGNKLQE----LEAEQQQIQEEKELLARQKDAMRADAGPVEQQLLE 1697
Query: 92 STMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVL------ 145
T + + E ++ AE + ++ V ++ ++++ + IE + + +++
Sbjct: 1698 ETEKLMKEKIEVQRQ-AEKEYDDLQKQVKVLEIDLEEQVSRFIELEQEKNAELMDLRQQN 1756
Query: 146 QTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLES 205
Q LE E+ K + D + H + F+ + + + + + + +E
Sbjct: 1757 QALEKQLEKTRKFLDEQAVD--REHERDVFQQEIQKLEQQLKVPQRSQPVNEHQSREVEQ 1814
Query: 206 RANDLTRISSEISEAI---NQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDA 262
N L + + SE + Q+ IQ+ + E ++ + I E+ + + I+AD Q+ V+
Sbjct: 1815 LTNHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLECRIRELEQALIISADNLQK-VEE 1873
Query: 263 MEEFSGVVNE-------VLSIAREGKDKGEKAIS----QVEDIQDAMKVIRQAVQEV-AE 310
++F ++ + L RE D+ EK ++ Q+E ++ ++ + VQ++ +
Sbjct: 1874 RKQFGTIIVKGELPLEIQLQAEREAVDRKEKEVTNLEEQLEQFREELENKNEEVQQLHMQ 1933
Query: 311 MSKNVGDIINAIADIAEQTNLL-----ALNAAIEAARAGELGRGFAVVAQEVRNLAEESK 365
+ + + ++ ++ L L AI+ + G + + +VA ++ ++ +E +
Sbjct: 1934 LEIQRKESTTHLQELEQENKLFKDEMEILGLAIQKSEDGTI-KDHHLVAGKLAHIMQEKE 1992
Query: 366 EAAEKIRGILNEIQEKVE-----KAVEETEKGVKVVDDSVDFLK-----------ETVGY 409
+ + + + ++Q+++E K EE + ++ ++ V+ LK E +
Sbjct: 1993 QEIDNLHEQIAKLQQQLEGTTDNKIFEEQNEHIRELEAQVECLKSDQERVKKKNDEEIEQ 2052
Query: 410 LMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQ 469
L ++ + L + ++ I +++ E ++ K LE + A + E ++ A +
Sbjct: 2053 LNDVIDKLQQELANIEQIPSDITAFHEDADSLKHTLETVLAEKEALEKQVESINLEASQT 2112
Query: 470 ASSMEEVKRNIIELR---DIVKKLREAV 494
+ +EE K + +L+ +I++K RE V
Sbjct: 2113 KNELEETKLEMNQLKQEINILRKEREEV 2140
>gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [Arabidopsis thaliana]
Length = 1313
Score = 74.9 bits (181), Expect = 2e-12
Identities = 87/404 (21%), Positives = 171/404 (41%), Gaps = 40/404 (9%)
Query: 89 LMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYRED-DEIGKLIEGFRAISQDVLQT 147
L N+ E+ + E++ E K + S + ED + I R VL+
Sbjct: 554 LKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEK 613
Query: 148 LEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRA 207
+E + K+ E V + K+ +SI + MK + +L+ S
Sbjct: 614 IE----ELSKVKESLVDKETKL------QSITQEAEELKGREAAHMKQIEELSTANASLV 663
Query: 208 NDLTRISSEISEAINQ------VAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVD 261
++ T++ S + E+ + + I+++SV + +N+T++ + + D+ +R V
Sbjct: 664 DEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKDLKEREVA 723
Query: 262 AMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQA-----VQEVAEMSKNVG 316
+++ E LS+A E E + ++ + ++ R+A ++E+++ ++N+
Sbjct: 724 YLKKI-----EELSVANESLVDKETKLQHIDQEAEELRG-REASHLKKIEELSKENENLV 777
Query: 317 DIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNL---AEESKEAAEKIRG 373
D + + +IAE++ L + EL +A V NL +EE+KE E+
Sbjct: 778 DNVANMQNIAEESKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRERETT 837
Query: 374 ILN---EIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGEL------LDDVESKL 424
+L E+ E E V++ K VV ++ + + YL I EL L D E+KL
Sbjct: 838 LLKKAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKL 897
Query: 425 QDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQE 468
Q +E +E K +E L+ ++ E+ E
Sbjct: 898 QISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVE 941
>pir||B71603 RESA-H3 antigen PFB0915w - malaria parasite (Plasmodium falciparum)
>gi|3845309|gb|AAC71972.1| (AE001424) RESA-H3 antigen
[Plasmodium falciparum]
Length = 1558
Score = 73.7 bits (178), Expect = 4e-12
Identities = 118/521 (22%), Positives = 234/521 (44%), Gaps = 72/521 (13%)
Query: 11 IFTPLILVVLTAIIIQNIAISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWL 70
+ T LI V A I+++++NLE+ +VE+ EN + +L ET++
Sbjct: 698 VATTLIETVEQAEEESASTITEIFENLEEN--------AVESNENVAENLE-KLNETVFN 748
Query: 71 SIGVMSIVAVISGALGMRLMNSTMRP--INEMAKIAESIAEGKLS---RAREMVSKIQYR 125
+ V+ V G L N+ M +E+ + I E L+ R+ E IQ
Sbjct: 749 T--VLDKVEETVEISGESLENNEMDKAFFSEIFDNVKGIQENLLTGMFRSIETSIVIQSE 806
Query: 126 E-----DDEIGKLIEGFRAISQDVLQTLEIIT------ERMEKISEGDVSDDLKVHA-KG 173
E ++ + +++ + + +L LE I+ E + + E +V D+ V A K
Sbjct: 807 EKVDLNENVVSSILDNIENMKEGLLNKLENISSTEGVQETVTEHVEQNVYVDVDVPAMKD 866
Query: 174 DFESILNS---MRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQ 230
F ILN +++ NL ++ K+ D+ +T+E EI + Q +
Sbjct: 867 QFLGILNEAGGLKEMFFNLEDVFKSESDV-ITVE-----------EIKDEPVQKEVEKET 914
Query: 231 VSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQ 290
VS+ + +ENI +++E D+T + +DA+EE + ++ KDK +
Sbjct: 915 VSI-IEEMEENIVDVLEEEK--EDLTDKMIDAVEESIEISSDSKEETESIKDKEKDVSLV 971
Query: 291 VEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGF 350
VE++QD + ++V++V E+ +++ +I + T+ L IE + EL
Sbjct: 972 VEEVQD--NDMDESVEKVLELKNMEEELMKDAVEINDITSKL-----IEETQ--ELNEVE 1022
Query: 351 AVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSV---DFLKETV 407
A + +++ L E K +E + I++ + +EK +EE +D+ V D ++ +
Sbjct: 1023 ADLIKDMEKLKELEKALSEDSKEIIDAKDDTLEKVIEEEHDITTTLDEVVELKDVEEDKI 1082
Query: 408 GYLMNIGELLDDVESKLQDIK----------NELANTQEHVENAKKALE-NLAASAQETT 456
+ ++ +L +D+ ++++IK EL + + KK +E + +E
Sbjct: 1083 EKVSDLKDLEEDILKEVKEIKELESEILEDYKELKTIETDILEEKKEIEKDHFEKFEEEA 1142
Query: 457 ASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFI 497
+++ A ++ SS+E + +E V +L+E VE I
Sbjct: 1143 EEIKDLEADILKEVSSLEVEEEKKLE---EVHELKEEVEHI 1180
Score = 72.6 bits (175), Expect = 9e-12
Identities = 100/514 (19%), Positives = 220/514 (42%), Gaps = 83/514 (16%)
Query: 25 IQNIAISDLYDNLEKTM--KVVQTGGSVEAIRE------TLENAKSQLKETLWLSIGVMS 76
++ ++ + +N+E+T V +E I+E T+E +L E
Sbjct: 619 VKENVVTTILENVEETTAESVTTFSNILEEIQENTITNDTIEEKLEELHEN--------- 669
Query: 77 IVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEG 136
V+S AL + E ++ + I E K A ++ ++ E++ + E
Sbjct: 670 ---VLSAAL------ENTQSEEEKKEVIDVIEEVKEEVATTLIETVEQAEEESASTITEI 720
Query: 137 FRAISQDVLQTLEIITERMEKISE-------GDVSDDLKVHA---------KGDFESILN 180
F + ++ +++ E + E +EK++E V + +++ K F I +
Sbjct: 721 FENLEENAVESNENVAENLEKLNETVFNTVLDKVEETVEISGESLENNEMDKAFFSEIFD 780
Query: 181 SMRKTISNLRELMKTVRDLALTLESRAN-DLTR-ISSEISEAINQVAEAI----QQVSVE 234
+++ NL M + ++ ++S DL + S I + I + E + + +S
Sbjct: 781 NVKGIQENLLTGMFRSIETSIVIQSEEKVDLNENVVSSILDNIENMKEGLLNKLENIS-S 839
Query: 235 AQRQQENITEIMEGMNITADVTQRTVDAM-EEFSGVVNEVLSIAR-----EGKDKGEKAI 288
+ QE +TE +E N+ DV V AM ++F G++NE + E K E +
Sbjct: 840 TEGVQETVTEHVE-QNVYVDVD---VPAMKDQFLGILNEAGGLKEMFFNLEDVFKSESDV 895
Query: 289 SQVEDIQDA---MKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGE 345
VE+I+D +V ++ V + EM +N+ D++ + + A+ +IE + +
Sbjct: 896 ITVEEIKDEPVQKEVEKETVSIIEEMEENIVDVLEEEKEDLTDKMIDAVEESIEISSDSK 955
Query: 346 LGRGFAVVAQEVRNLAEESKEAAEKIRGIL-NEIQEKVEKAVEETEKGVKVVDDSVDFLK 404
+E ++ ++ K+ + + + N++ E VEK +E +++ D+V+
Sbjct: 956 ---------EETESIKDKEKDVSLVVEEVQDNDMDESVEKVLELKNMEEELMKDAVE--- 1003
Query: 405 ETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSA 464
+ +I L + +L +++ +L E ++ +KAL ++E + ++
Sbjct: 1004 -----INDITSKLIEETQELNEVEADLIKDMEKLKELEKALSE---DSKEIIDAKDDTLE 1055
Query: 465 SAQEQASSMEEVKRNIIELRDIVKKLREAVEFIK 498
E+ + ++EL+D+ + E V +K
Sbjct: 1056 KVIEEEHDITTTLDEVVELKDVEEDKIEKVSDLK 1089
>dbj|BAA09069.1| (D50476) myosin heavy chain [Cyprinus carpio]
Length = 955
Score = 73.4 bits (177), Expect = 5e-12
Identities = 89/402 (22%), Positives = 179/402 (44%), Gaps = 56/402 (13%)
Query: 142 QDVLQTLEIITERMEKISE--GDVSDDLKVHAKGDFESILNSMRKTI-SNLRELMKTVRD 198
++ L LE + + + + D+++ L K E L +KT+ S E+ + +
Sbjct: 510 EEALDHLETLKRENKNLQQEISDLTEQLGETGKSIHE--LEKAKKTVESEKSEIQTALEE 567
Query: 199 LALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQR 258
TLE + + R+ E+++ +++ + + E ++ + N +++ M T D R
Sbjct: 568 AEGTLEHEESKILRVQLELNQVKSEIDRKLAEKDEEMEQIKRNSQRVIDSMQSTLDSEVR 627
Query: 259 TV-DAM---EEFSGVVNEV---LSIAREGKDKGEKAISQVE-DIQDAMKVIRQAVQEVAE 310
+ DA+ ++ G +NE+ LS A + +K + V+ ++DA + +AV+ +
Sbjct: 628 SRNDALRVKKKMEGDLNEMEIQLSHANRQAAEAQKQLRNVQGQLKDAQLHLDEAVRGQED 687
Query: 311 MSKNVGDIINAIADIAEQTNLLALNAAIEAARAG--ELGRGFAVVAQEVRNLAEESK--- 365
M + V + E+ N L + A IE RA + RG V QE+ + +E
Sbjct: 688 MKEQVA--------MVERRNSL-MQAEIEELRAALEQTERGRKVAEQELVDASERVGLLH 738
Query: 366 -------EAAEKIRGILNEIQEKVEKAVEET----EKGVKVVDDSV---DFLKETVGYLM 411
+K+ L ++Q +V+ AV+E EK K + D+ + LK+
Sbjct: 739 SQNTSLINTKKKLEADLVQVQGEVDDAVQEARNAEEKAKKAITDAAMMAEELKKEQDTSA 798
Query: 412 NIGELLDDVESKLQDIKNELANTQE-HVENAKKALENLAASAQETTASAE---------- 460
++ + ++E ++D+++ L + ++ KK L+ L + +E A E
Sbjct: 799 HLERMKKNLEVTVKDLQHRLDEAESLAMKGGKKQLQKLESRVRELEAEVEAEQRRGADAV 858
Query: 461 ----EVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIK 498
+ +E EE K+N+I L+D+V KL+ V+ K
Sbjct: 859 KGVRKYERRVKELTYQTEEDKKNVIRLQDLVDKLQLKVKVYK 900
>pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|1850913|gb|AAB48065.1|
(L03534) myosin heavy chain [Entamoeba histolytica]
Length = 2139
Score = 73.4 bits (177), Expect = 5e-12
Identities = 109/507 (21%), Positives = 225/507 (43%), Gaps = 61/507 (12%)
Query: 35 DNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTM 94
D E +K+ E ++ET++N K LK++ + + ++ + +N+T+
Sbjct: 925 DKQELNLKIENLEEDKEELKETIDNLKGDLKDSKLKGEDLEVEITELNSQINT--LNATV 982
Query: 95 -RPINEMAKIAESI--AEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEII 151
+ +A++ ESI E ++++ + + ++ +DD +E RA DV T + I
Sbjct: 983 DKKDKTIAEMQESIDEKEDEITKLKGDIKLLEEEKDD-----LEQDRA---DVSATKDDI 1034
Query: 152 TERMEKISEG--DVSDDL-KVHAKGDFES-----ILNSMRKTISNLRELMKTV------- 196
+++ KI+ D D++ K+ + + E + N +++T L E K++
Sbjct: 1035 AKKLNKITIECEDAKDEIAKLEQELEDEENKNKDLTNELQQTQLKLGETEKSLAAQVAAT 1094
Query: 197 ------RD-LALTLESR---ANDLTRISSEISEAINQVAEAIQ-------QVSVEAQRQQ 239
RD L+ LE+ +LT+ +++ + I+ + + + ++ + + Q
Sbjct: 1095 KKASDERDTLSQNLENEKLTTKNLTKTKADLEKKISGLKQDYEDLEDDKNKIEGDLRNAQ 1154
Query: 240 ENITEIMEGMNITADVTQRTVDAMEEFSGVV----NEVLSIAREGKDKGEKAISQVE-DI 294
I E+ + + ADV+Q EE+ + E +I + K+K EK I + E +I
Sbjct: 1155 RKIKELDDEITKGADVSQYLQKQKEEYESQIAKMQEEKEAIGNDVKNK-EKTIKEKELEI 1213
Query: 295 QDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVA 354
Q + + + E + K +I + + E+ + + +L
Sbjct: 1214 QSLQEKLDETEVEKEDAEKKKKEIEKEMKALQEEKENVESSKNSTEKDKKKLEDNLKDTQ 1273
Query: 355 QEVRNLA---EESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLM 411
+++ ++ E+ K A+ + LNE+Q+ EKAV + E K S L L
Sbjct: 1274 KKLDDMTADNEKLKAKAKDLEAQLNEVQDNHEKAVADAELLNKKKAQSDKELNSLKAELE 1333
Query: 412 NIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQAS 471
+ + VESK +D +NE A E ++ A + L+N+ A ++ TA +E A E+ +
Sbjct: 1334 ALTKAKSVVESKNKDSENEKAALSEEIDQANEKLKNIQADLRKATADLQE----ANEKKA 1389
Query: 472 SMEEVKRNIIELRDIVKKLREAVEFIK 498
+E + ++ KK+ + +E IK
Sbjct: 1390 EVEAQRDKLVADN---KKMTKTLEEIK 1413
>dbj|BAA22069.1| (D89992) myosin heavy chain [Cyprinus carpio]
Length = 1935
Score = 73.4 bits (177), Expect = 5e-12
Identities = 89/402 (22%), Positives = 179/402 (44%), Gaps = 56/402 (13%)
Query: 142 QDVLQTLEIITERMEKISE--GDVSDDLKVHAKGDFESILNSMRKTI-SNLRELMKTVRD 198
++ L LE + + + + D+++ L K E L +KT+ S E+ + +
Sbjct: 1490 EEALDHLETLKRENKNLQQEISDLTEQLGETGKSIHE--LEKAKKTVESEKSEIQTALEE 1547
Query: 199 LALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQR 258
TLE + + R+ E+++ +++ + + E ++ + N +++ M T D R
Sbjct: 1548 AEGTLEHEESKILRVQLELNQVKSEIDRKLAEKDEEMEQIKRNSQRVIDSMQSTLDSEVR 1607
Query: 259 TV-DAM---EEFSGVVNEV---LSIAREGKDKGEKAISQVE-DIQDAMKVIRQAVQEVAE 310
+ DA+ ++ G +NE+ LS A + +K + V+ ++DA + +AV+ +
Sbjct: 1608 SRNDALRVKKKMEGDLNEMEIQLSHANRQAAEAQKQLRNVQGQLKDAQLHLDEAVRGQED 1667
Query: 311 MSKNVGDIINAIADIAEQTNLLALNAAIEAARAG--ELGRGFAVVAQEVRNLAEESK--- 365
M + V + E+ N L + A IE RA + RG V QE+ + +E
Sbjct: 1668 MKEQVA--------MVERRNSL-MQAEIEELRAALEQTERGRKVAEQELVDASERVGLLH 1718
Query: 366 -------EAAEKIRGILNEIQEKVEKAVEET----EKGVKVVDDSV---DFLKETVGYLM 411
+K+ L ++Q +V+ AV+E EK K + D+ + LK+
Sbjct: 1719 SQNTSLINTKKKLEADLVQVQGEVDDAVQEARNAEEKAKKAITDAAMMAEELKKEQDTSA 1778
Query: 412 NIGELLDDVESKLQDIKNELANTQE-HVENAKKALENLAASAQETTASAE---------- 460
++ + ++E ++D+++ L + ++ KK L+ L + +E A E
Sbjct: 1779 HLERMKKNLEVTVKDLQHRLDEAESLAMKGGKKQLQKLESRVRELEAEVEAEQRRGADAV 1838
Query: 461 ----EVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFIK 498
+ +E EE K+N+I L+D+V KL+ V+ K
Sbjct: 1839 KGVRKYERRVKELTYQTEEDKKNVIRLQDLVDKLQLKVKVYK 1880
>emb|CAB65343.1| (AJ007010) liver stage antigen-3 [Plasmodium falciparum]
Length = 1786
Score = 73.4 bits (177), Expect = 5e-12
Identities = 113/502 (22%), Positives = 228/502 (44%), Gaps = 72/502 (14%)
Query: 30 ISDLYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRL 89
I+++++NLE+ +VE+ EN + +L ET++ + V+ V G L
Sbjct: 949 ITEIFENLEEN--------AVESNENVAENLE-KLNETVFNT--VLDKVEETVEISGESL 997
Query: 90 MNSTMRP--INEMAKIAESIAEGKLS---RAREMVSKIQYRE-----DDEIGKLIEGFRA 139
N+ M +E+ + I E L+ R+ E IQ E ++ + +++
Sbjct: 998 ENNEMDKAFFSEIFDNVKGIQENLLTGMFRSIETSIVIQSEEKVDLNENVVSSILDNIEN 1057
Query: 140 ISQDVLQTLEIIT------ERMEKISEGDVSDDLKVHA-KGDFESILNS---MRKTISNL 189
+ + +L LE I+ E + + E +V D+ V A K F ILN +++ NL
Sbjct: 1058 MKEGLLNKLENISSTEGVQETVTEHVEQNVYVDVDVPAMKDQFLGILNEAGGLKEMFFNL 1117
Query: 190 RELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGM 249
++ K+ D+ +T+E EI + Q + VS+ + +ENI +++E
Sbjct: 1118 EDVFKSESDV-ITVE-----------EIKDEPVQKEVEKETVSI-IEEMEENIVDVLEEE 1164
Query: 250 NITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVA 309
D+T + +DA+EE + ++ KDK + VE++QD + ++V++V
Sbjct: 1165 K--EDLTDKMIDAVEESIEISSDSKEETESIKDKEKDVSLVVEEVQD--NDMDESVEKVL 1220
Query: 310 EMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAE 369
E+ +++ +I + T+ L IE + EL A + +++ L E K +E
Sbjct: 1221 ELKNMEEELMKDAVEINDITSKL-----IEETQ--ELNEVEADLIKDMEKLKELEKALSE 1273
Query: 370 KIRGILNEIQEKVEKAVEETEKGVKVVDDSV---DFLKETVGYLMNIGELLDDVESKLQD 426
+ I++ + +EK +EE +D+ V D ++ + + ++ +L +D+ ++++
Sbjct: 1274 DSKEIIDAKDDTLEKVIEEEHDITTTLDEVVELKDVEEDKIEKVSDLKDLEEDILKEVKE 1333
Query: 427 IK----------NELANTQEHVENAKKALE-NLAASAQETTASAEEVSASAQEQASSMEE 475
IK EL + + KK +E + +E +++ A ++ SS+E
Sbjct: 1334 IKELESEILEDYKELKTIETDILEEKKEIEKDHFEKFEEEAEEIKDLEADILKEVSSLEV 1393
Query: 476 VKRNIIELRDIVKKLREAVEFI 497
+ +E V +L+E VE I
Sbjct: 1394 EEEKKLE---EVHELKEEVEHI 1412
>pir||A59236 embryonic muscle myosin heavy chain - sea squirt (Halocynthia
roretzi) >gi|1197168|dbj|BAA08111.1| (D45163) embryonic
muscle myosin heavy chain [Halocynthia roretzi]
Length = 1927
Score = 71.8 bits (173), Expect = 2e-11
Identities = 88/449 (19%), Positives = 185/449 (40%), Gaps = 46/449 (10%)
Query: 91 NSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAIS--QDVLQTL 148
NS +++ + + + + + E+ +++ + + G E F+ + ++ L L
Sbjct: 1436 NSAAAALDKKQRNFDKVLAERKQKEEEIQVELEQAQKEARGLSTELFKMKNSYEESLDAL 1495
Query: 149 EIITERMEKISE--GDVSDDLKVHAKGDFESILNSMRKTISNLR-ELMKTVRDLALTLES 205
E + + + E D++D L K E L ++T+ + R E+ + + +E
Sbjct: 1496 ETVKRENKNLQEEIADLTDQLGEGGKSIHE--LEKAKRTLEHERNEIQAALEEAEGAIEG 1553
Query: 206 RANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVT----QRTVD 261
+ + R+ E+++ + + E + + N +E M T D Q V
Sbjct: 1554 EESKVLRLQVELAQIKQDFERRLSEKEEEIENTRRNQQRALESMQTTLDSESKSRQEAVR 1613
Query: 262 AMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINA 321
++ G +N++ + ++ V+ Q +K + +V E ++ D+
Sbjct: 1614 MKKKMEGDLNDLEIQLGHATRQASESQKSVKTFQAHVKDLEL---QVDESQRHSDDLQEQ 1670
Query: 322 IADIAEQTNLLA-----LNAAIEAARAG-ELGRGFAVVAQEVRNLAEESKEAA----EKI 371
A I + NL+ L +A+E A G +L + + E NL A K+
Sbjct: 1671 FAVIERRENLIKAEIDELRSALEQAERGRKLAETELLESSERSNLLHTQNTALINQKRKL 1730
Query: 372 RGILNEIQEKVEKAVEET----EKGVKVVDDSV---DFLKETVGYLMNIGELLDDVESKL 424
G L +Q +VE+AV+E EK K + D+ + LK+ ++ + + E +
Sbjct: 1731 EGELQNVQSEVEEAVQEQRNAEEKAKKAITDAAMMAEELKKEQDLSSHLERMKKNTEQTV 1790
Query: 425 QDIKNELANTQE-----------HVENAKKALENLAASAQ----ETTASAEEVSASAQEQ 469
+D++ L ++ +E + LEN S Q E+ + + +E
Sbjct: 1791 KDLQQRLDEAEQVALKGGKKQVQKLETRVRELENELDSEQRRNGESVKNQRKTERKLKEV 1850
Query: 470 ASSMEEVKRNIIELRDIVKKLREAVEFIK 498
EE K+N++ ++D+V KL+ V+ K
Sbjct: 1851 TYQAEEDKKNLVRIQDLVDKLQIKVKTYK 1879
>gi|7662216 KIAA0635 gene product [Homo sapiens] >gi|3327084|dbj|BAA31610.1|
(AB014535) KIAA0635 protein [Homo sapiens]
Length = 846
Score = 71.8 bits (173), Expect = 2e-11
Identities = 84/378 (22%), Positives = 172/378 (45%), Gaps = 37/378 (9%)
Query: 125 REDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRK 184
RE DE+ +++E F +D+ ++++T +K+S L A+ + ++ +
Sbjct: 209 RERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSV------LYNEAQEELSALRKESTQ 262
Query: 185 TIS--NLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENI 242
T + N+ LM+ ++LAL +DL RI +E EA+ + E I++VS+ + + E
Sbjct: 263 TTAPHNIVSLMEKEKELAL------SDLRRIMAE-KEALREKLEHIEEVSLFGKSELEKT 315
Query: 243 TEIMEGMNITA-----DVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDA 297
E + +N ++ + + E + N++ A++ + Q ++ ++
Sbjct: 316 IEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEV-NS 374
Query: 298 MKVIRQAVQEVAE-----MSKNVGDIINAIADI---AEQTNLLALNAAIEAARAGELGRG 349
++++ + +Q + +S G++ +A A I E+ + L L + A + +
Sbjct: 375 LRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKT 434
Query: 350 FAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGY 409
V+ +E L E E EKI + + K EKAV + + + + SV+ LKET
Sbjct: 435 IGVIDKEKDFLQETVDEKTEKIANLQENLANK-EKAVAQMKIMISECESSVNQLKET--- 490
Query: 410 LMNIGELLDDVESKLQDIKNELANTQEHVENA----KKALENLAASAQETTASAEEVSAS 465
L+N ++ + +L EL E A ++ ++LA A+E + E+ A+
Sbjct: 491 LVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAA 550
Query: 466 AQEQASSMEEVKRNIIEL 483
QE+ V + I E+
Sbjct: 551 VQEKEEMKSRVHKYITEV 568
>pir||T22976 hypothetical protein F59A2.6 - Caenorhabditis elegans
>gi|3877858|emb|CAA84332.1| (Z34801) Similarity with
drosohila MSP-300 protein (PIR acc. no. S30431),
contains similarity to Pfam domain: PF01465 (GRIP
domain), Score=90.2, E-value=1.4e-23, N=1
[Caenorhabditis elegans] >gi|3878093|emb|CAA91344.1|
(Z66514) Similarity with drosohila MSP-300 protein (PIR
acc. no. S30431), contains similarity to Pfam domain:
PF01465 (GRIP domain), Score=90.2, E-value=1.4e-23, N=1
[Caenorhabditis elegans]
Length = 1133
Score = 71.0 bits (171), Expect = 3e-11
Identities = 85/423 (20%), Positives = 190/423 (44%), Gaps = 47/423 (11%)
Query: 99 EMAKIAESIAEGKLSRAREMVSKIQYREDD------EIGKLIEGFRAISQDVLQTLEIIT 152
EMAKIA+S + KL+R ++ +++ ++D E I+ + D + ++++
Sbjct: 343 EMAKIAKSTEDEKLAR-EQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLK 401
Query: 153 ERMEKISEG-DVSDDLKVHAKGD-----FESILNSMRKTISNLRELMKTVRDLALTLESR 206
E++E+ + S +L K D + + N+ +++ L + VR L TLE+
Sbjct: 402 EQLERAQSALESSQELASSQKADKIQELEKELQNAQKRSSEELETANEMVRSLTATLEN- 460
Query: 207 ANDLTRISSEISEAINQVAEAIQQ--------VSVEAQRQQENITEIMEGMNITADVTQR 258
+N T I + E +++ +A QQ ++V E + + N+ + Q
Sbjct: 461 SNSETEILKQKLETLDKELQARQQTEKALTEEINVLTTSLAEKEQQTAQIQNLQTQIYQM 520
Query: 259 TVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDI 318
V+ E+ V ++ A+ E +++E ++ +K + QA E
Sbjct: 521 EVEKEEKVELVKVQLQQAAQSSSSAEEALRAEIEQLEAKLKAVEQAKAEA---------- 570
Query: 319 INAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEI 378
+N++ +AE+ +L A + + +L +V +++ A+ S + +R + ++
Sbjct: 571 LNSL--LAEKEHLQAQLHQLGVEKEEKL----EMVKVQLQQAAQSSSSVEQALRAEIEKL 624
Query: 379 QEKVEKAVEETEKGVKV-VDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEH 437
+ K+++ EE + + + + + + +L + E KL+ +K +L Q+
Sbjct: 625 EAKLQEIEEEKKNALNASLAEKEQQTAQIQELQAQLHQLEVEKEEKLEMVKVQL---QQA 681
Query: 438 VENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKLREAVEFI 497
+++ + L A ++ A +E+ + + +S E+ R EL ++ +K+R VEFI
Sbjct: 682 AQSSSSVEQALRAEIEKLEAKLQEIEKAKMQNSSKREQKVR---ELSNLNEKMR--VEFI 736
Query: 498 KVE 500
E
Sbjct: 737 AKE 739
>gb|AAF53604.1| (AE003655) CLIP-190 gene product [alt 1] [Drosophila melanogaster]
>gi|7298380|gb|AAF53605.1| (AE003655) CLIP-190 gene
product [alt 2] [Drosophila melanogaster]
Length = 1690
Score = 71.0 bits (171), Expect = 3e-11
Identities = 87/466 (18%), Positives = 194/466 (40%), Gaps = 56/466 (12%)
Query: 51 EAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEG 110
E+I+ E E L LS G + T++ + E +I + +
Sbjct: 1055 ESIKNLQEEVTKAKTENLELSTGTQT----------------TIKDLQERLEITNAELQH 1098
Query: 111 KLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVH 170
K A E KI ++ L+E + + ++ T ++ +E + + + S+ +
Sbjct: 1099 KEKMASEDAQKIA-----DLKTLVEAIQVANANISATNAELSTVLE-VLQAEKSETNHIF 1152
Query: 171 AKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQ 230
+ E+ +NS R I + + + +++ L L+ R E+ E + Q ++ Q+
Sbjct: 1153 ELFEMEADMNSER-LIEKVTGIKEELKETHLQLDERQKKF----EELEEKLKQAQQSEQK 1207
Query: 231 VSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQ 290
+ E+Q +E +TEI + + D ++ + ++ V E SI K ++ Q
Sbjct: 1208 LQQESQTSKEKLTEIQQSLQELQDSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQ 1267
Query: 291 VED-----------IQDAMKVIRQAVQEVAEMSKNV-------GDIINAIADIAEQTNLL 332
+E+ + ++ K +Q +E A++S + GDI +++ + E +L
Sbjct: 1268 LENKTSCLKETQDQLLESQKKEKQLQEEAAKLSGELQQVQEANGDIKDSLVKVEELVKVL 1327
Query: 333 --ALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETE 390
L AA A + +E++ L +S+E ++G + EK+++ +
Sbjct: 1328 EEKLQAATSQLDAQQ------ATNKELQELLVKSQENEGNLQGESLAVTEKLQQLEQANG 1381
Query: 391 KGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAA 450
+ + + + LKE G L +L+ + +I+++L Q+ ++ LA
Sbjct: 1382 ELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQDKLEQAQQKERTLQEETSKLAE 1441
Query: 451 SAQETTASAEEVSASAQEQASSME---EVKRNIIELRDIVKKLREA 493
+ + EE+ S Q++ +E E + E + ++ ++ +A
Sbjct: 1442 QLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQKVIDEMDDA 1487
>pir||T13030 microtubule binding protein D-CLIP-190 - fruit fly (Drosophila
melanogaster) >gi|2773363|gb|AAB96783.1| (AF041382)
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster]
Length = 1690
Score = 71.0 bits (171), Expect = 3e-11
Identities = 87/466 (18%), Positives = 194/466 (40%), Gaps = 56/466 (12%)
Query: 51 EAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEG 110
E+I+ E E L LS G + T++ + E +I + +
Sbjct: 1055 ESIKNLQEEVTKAKTENLELSTGTQT----------------TIKDLQERLEITNAELQH 1098
Query: 111 KLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVH 170
K A E KI ++ L+E + + ++ T ++ +E + + + S+ +
Sbjct: 1099 KEKMASEDAQKIA-----DLKTLVEAIQVANANISATNAELSTVLE-VLQAEKSETNHIF 1152
Query: 171 AKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQ 230
+ E+ +NS R I + + + +++ L L+ R E+ E + Q ++ Q+
Sbjct: 1153 ELFEMEADMNSER-LIEKVTGIKEELKETHLQLDERQKKF----EELEEKLKQAQQSEQK 1207
Query: 231 VSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQ 290
+ E+Q +E +TEI + + D ++ + ++ V E SI K ++ Q
Sbjct: 1208 LQQESQTSKEKLTEIQQSLQELQDSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQ 1267
Query: 291 VED-----------IQDAMKVIRQAVQEVAEMSKNV-------GDIINAIADIAEQTNLL 332
+E+ + ++ K +Q +E A++S + GDI +++ + E +L
Sbjct: 1268 LENKTSCLKETQDQLLESQKKEKQLQEEAAKLSGELQQVQEANGDIKDSLVKVEELVKVL 1327
Query: 333 --ALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETE 390
L AA A + +E++ L +S+E ++G + EK+++ +
Sbjct: 1328 EEKLQAATSQLDAQQ------ATNKELQELLVKSQENEGNLQGESLAVTEKLQQLEQANG 1381
Query: 391 KGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAA 450
+ + + + LKE G L +L+ + +I+++L Q+ ++ LA
Sbjct: 1382 ELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQDKLEQAQQKERTLQEETSKLAE 1441
Query: 451 SAQETTASAEEVSASAQEQASSME---EVKRNIIELRDIVKKLREA 493
+ + EE+ S Q++ +E E + E + ++ ++ +A
Sbjct: 1442 QLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQKVIDEMDDA 1487
>gb|AAD13771.1| (AF097906) myosin heavy chain [Rana catesbeiana]
Length = 713
Score = 70.6 bits (170), Expect = 3e-11
Identities = 103/501 (20%), Positives = 208/501 (40%), Gaps = 53/501 (10%)
Query: 33 LYDNLEKTMKVVQTGGSVEAIRETLENAKSQLKETLWLSIGVMSIVAVISGALGMRLMNS 92
L D E+ V S+E ++ L+N LK + S + + L
Sbjct: 177 LQDAEEQIEAVNSKCSSLEKTKQRLQNEVEDLKVDVERSNSACAALDKKQKNFDKVLAEW 236
Query: 93 TMRPINEMAKIAESIAEGKLSRAREMVSKIQYRED-DEIGKLIEGFRAISQDVLQTLEII 151
+ A++ S E + K Y E D++ L + + Q++ E I
Sbjct: 237 KQKYEETQAELEASQKECRSLSTEIFKMKNSYEEALDQLETLKRENKNLQQEISDLTEQI 296
Query: 152 TERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLT 211
E + I E + + + DF++ L ++ + + + L + LE LT
Sbjct: 297 AESGKTIHELEKAKKQVEQERSDFQAALEEAEASLEH-----EEAKILRVQLE-----LT 346
Query: 212 RISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVN 271
++ SEI I + E I Q+ +QR E++ ++ + + R ME G +N
Sbjct: 347 QVKSEIDRKIAEKDEEIDQIKRNSQRALESLQSSLDSEIRSRNDALRLKKKME---GDLN 403
Query: 272 EVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNL 331
E+ + +A Q+ ++Q K A + + + + D+ +A + NL
Sbjct: 404 EMEIQLSHANRQAAEAQKQLRNVQAQFK---DAQLHLDDALRGIEDLKEQLAISERRGNL 460
Query: 332 LALNAAIEAARAG--ELGRGFAVVAQEVRNLAEESK----------EAAEKIRGILNEIQ 379
L + IE R+ + R V QE+ ++ E + +K+ ++++Q
Sbjct: 461 LT--SEIEEIRSALEQTDRARKVAEQELLDVTERVQLLHTQNTSLINTKKKLESDVSQLQ 518
Query: 380 EKVEKAVEET----EKGVKVVDDSV---DFLKETVGYLMNIGELLDDVESKLQDIKNELA 432
+VE+A++E+ EK K + D+ + LK+ ++ + ++E ++D+++ L
Sbjct: 519 SEVEEAIQESRNADEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQSVKDLQHRLD 578
Query: 433 NTQE-HVENAKKALENLAASAQE--TTASAEEVSAS------------AQEQASSMEEVK 477
++ ++ KK L+ L A +E AE+ +S +E + EE +
Sbjct: 579 EAEQLALKGGKKQLQKLEARVRELENELDAEQRRSSDAIKGVRKYERRVKELSYQSEEDR 638
Query: 478 RNIIELRDIVKKLREAVEFIK 498
+N++ L+D+V KL+ V+ K
Sbjct: 639 KNVLRLQDLVDKLQMKVKSYK 659
>gb|AAF61445.1|AF139055_1 (AF139055) nonmuscle myosin heavy chain-B [Rattus norvegicus]
Length = 1976
Score = 70.6 bits (170), Expect = 3e-11
Identities = 81/466 (17%), Positives = 196/466 (41%), Gaps = 56/466 (12%)
Query: 30 ISDLYDNLEKT-MKVVQTGGSVEA-IRETLENAKSQLKETLWLSIGVMSIVAVISGALGM 87
+S L + EK MK + +E+ +++T E + + ++ L LS + +
Sbjct: 1292 VSTLLEEAEKKGMKFAKDAAGLESQLQDTQELLQEETRQKLNLSSRIRQLEEE------- 1344
Query: 88 RLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQT 147
++++ E + A E ++ + ++ + + DD++G IEG + +L+
Sbjct: 1345 ---KNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGT-IEGLEEAKKKLLKD 1400
Query: 148 LEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRA 207
+E +++R+E+ KV A E N +++ + +L + R + LE +
Sbjct: 1401 VEALSQRLEE----------KVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1450
Query: 208 NDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFS 267
++ +E + AE + EA+ ++ + + + ++A EEF
Sbjct: 1451 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKALSLARAL-------EEALEAKEEFE 1503
Query: 268 GVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAEMSKNVGDIINAIAD--I 325
++ + + + V +++ + + + Q V+E+ + + D + A D +
Sbjct: 1504 RQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKL 1563
Query: 326 AEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEKIRGILNEIQEKVEKA 385
+ N+ A+ A E R+L ++ EK R +L +++E +
Sbjct: 1564 RLEVNMQAMKAQFE------------------RDLQTRDEQNEEKKRLLLKQVRELEAEL 1605
Query: 386 VEETEKGVKVVDDSVDF---LKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAK 442
+E ++ V LK+ + + D+V +L+ ++ ++ + Q +E A+
Sbjct: 1606 EDERKQRALAVASKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEAR 1665
Query: 443 KALENLAASAQETTASAEEVSA---SAQEQASSMEEVKRNIIELRD 485
+ + + A ++E+ + + A QE+ +S E +R+ + RD
Sbjct: 1666 ASRDEIFAQSKESEKKLKSLEAEILQLQEELASSERARRHAEQERD 1711
>dbj|BAA36494.1| (AB022023) nonmuscle myosin heavy chain B [Bos taurus]
Length = 1976
Score = 69.5 bits (167), Expect = 8e-11
Identities = 83/393 (21%), Positives = 179/393 (45%), Gaps = 36/393 (9%)
Query: 111 KLSRAREMVSKIQYREDDEIGKLIEGFRAISQDVLQTLEI-ITERMEKISEGDVSDDLKV 169
++ + E S +Q ++++E E R + LQ L+ +T+ +K V DDL
Sbjct: 1337 RIRQLEEERSSLQEQQEEE-----EEARRSLEKQLQALQAQLTDTKKK-----VDDDL-- 1384
Query: 170 HAKGDFESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQ 229
G E++ + +K + ++ L + + + AL + TR+ E+ + + + Q
Sbjct: 1385 ---GTIENLEEAKKKLLKDVEVLSQRLEEKALAYDKLEKTKTRLQQELDDLLVDLDHQRQ 1441
Query: 230 QVSVEAQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAR------EGKDK 283
VS ++Q++ + E NI+A + A E + LS+AR E +++
Sbjct: 1442 IVSNLEKKQKKFDQLLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAREE 1501
Query: 284 GEKAISQVE-DIQDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAAR 342
E+ Q+ D++D M + V E+ K+ + + ++ +T L L ++A
Sbjct: 1502 AERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEM--RTQLEELEDELQATE 1559
Query: 343 AGELGRGF---AVVAQEVRNLAEESKEAAEKIRGILNEIQE-KVEKAVEETEKGVKVVDD 398
+L A+ AQ R+L ++ EK R ++ +++E + E E ++ + V
Sbjct: 1560 DAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASK 1619
Query: 399 ---SVDFLKETVGYLMNIGELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQET 455
+D LK+ + + D+V +L+ ++ ++ + Q +E A+ + + + A ++E+
Sbjct: 1620 KKMEID-LKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1678
Query: 456 TASAEEVSA---SAQEQASSMEEVKRNIIELRD 485
+ + A QE+ +S E +R+ + RD
Sbjct: 1679 EKKLKSLEAEILQLQEELASSERARRHAEQERD 1711
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.311 0.128 0.316
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132343474
Number of Sequences: 2977
Number of extensions: 4669879
Number of successful extensions: 44946
Number of sequences better than 1.0e-10: 296
Number of HSP's better than 0.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 41949
Number of HSP's gapped (non-prelim): 970
length of query: 501
length of database: 189,106,746
effective HSP length: 72
effective length of query: 429
effective length of database: 146,015,682
effective search space: 62640727578
effective search space used: 62640727578
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 167 (69.5 bits)