BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2067 (PAB2067) DE:Hypothetical protein
         (265 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75158 hypothetical protein PAB2067 - Pyrococcus abyssi (st...   529  e-149
pir||D71197 hypothetical protein PH1850 - Pyrococcus horikoshii ...   437  e-122

>pir||A75158 hypothetical protein PAB2067 - Pyrococcus abyssi (strain Orsay)
           >gi|5457854|emb|CAB49344.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 265
           
 Score =  529 bits (1347), Expect = e-149
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MYQEFFTLVPIDIEEIDRALGGGLIRGATISIMYDAFSLGWALGFEILKNLVKKNSLGVI 60
           MYQEFFTLVPIDIEEIDRALGGGLIRGATISIMYDAFSLGWALGFEILKNLVKKNSLGVI
Sbjct: 1   MYQEFFTLVPIDIEEIDRALGGGLIRGATISIMYDAFSLGWALGFEILKNLVKKNSLGVI 60

Query: 61  HNYNLPTIKLISRAAFVGLNIKELGEKKEVLVVDIFGSKYDVPPYDSYVFQVQNPTPETL 120
           HNYNLPTIKLISRAAFVGLNIKELGEKKEVLVVDIFGSKYDVPPYDSYVFQVQNPTPETL
Sbjct: 61  HNYNLPTIKLISRAAFVGLNIKELGEKKEVLVVDIFGSKYDVPPYDSYVFQVQNPTPETL 120

Query: 121 NPKIESLYESKIFPIAGSKRVVKLVYTLDGLATMFGEDVAIKLLNGELAWLAKMYSKRNV 180
           NPKIESLYESKIFPIAGSKRVVKLVYTLDGLATMFGEDVAIKLLNGELAWLAKMYSKRNV
Sbjct: 121 NPKIESLYESKIFPIAGSKRVVKLVYTLDGLATMFGEDVAIKLLNGELAWLAKMYSKRNV 180

Query: 181 MTILLLNVDMVSKKLIAWTSGLSDIVITFQSFEEEVEGEFIEKMTIVKSLHPEFEPTTYE 240
           MTILLLNVDMVSKKLIAWTSGLSDIVITFQSFEEEVEGEFIEKMTIVKSLHPEFEPTTYE
Sbjct: 181 MTILLLNVDMVSKKLIAWTSGLSDIVITFQSFEEEVEGEFIEKMTIVKSLHPEFEPTTYE 240

Query: 241 FKVSTSDHGRHVLDIRRIENNKKKD 265
           FKVSTSDHGRHVLDIRRIENNKKKD
Sbjct: 241 FKVSTSDHGRHVLDIRRIENNKKKD 265


>pir||D71197 hypothetical protein PH1850 - Pyrococcus horikoshii
           >gi|3258288|dbj|BAA30971.1| (AP000007) 264aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 264
           
 Score =  437 bits (1111), Expect = e-122
 Identities = 203/264 (76%), Positives = 240/264 (90%)

Query: 1   MYQEFFTLVPIDIEEIDRALGGGLIRGATISIMYDAFSLGWALGFEILKNLVKKNSLGVI 60
           MYQEFFT +P+DIEE+D+A GGGLIRGATISIMYDAFSLGWALGFE++KNL+++NS GVI
Sbjct: 1   MYQEFFTFIPVDIEELDKAFGGGLIRGATISIMYDAFSLGWALGFEMVKNLIRRNSFGVI 60

Query: 61  HNYNLPTIKLISRAAFVGLNIKELGEKKEVLVVDIFGSKYDVPPYDSYVFQVQNPTPETL 120
           HNYNLPTIKLISRA+FVGLNI+EL ++KE++++D+FGSKYDVPPY  YV QV NPTPETL
Sbjct: 61  HNYNLPTIKLISRASFVGLNIQELAKRKEIMILDVFGSKYDVPPYADYVLQVPNPTPETL 120

Query: 121 NPKIESLYESKIFPIAGSKRVVKLVYTLDGLATMFGEDVAIKLLNGELAWLAKMYSKRNV 180
           NPKIES+YE+KIF +AG +R+VKLVYTLDG+ATMFGE+VAIKLLNGELAWLAKMY KRNV
Sbjct: 121 NPKIESVYENKIFQVAGDRRIVKLVYTLDGVATMFGEEVAIKLLNGELAWLAKMYGKRNV 180

Query: 181 MTILLLNVDMVSKKLIAWTSGLSDIVITFQSFEEEVEGEFIEKMTIVKSLHPEFEPTTYE 240
           MTILLLNVDMVSKK IAWTSG+SDIVITFQS  EE EGE +E+MT++KSL+PEFEPT+YE
Sbjct: 181 MTILLLNVDMVSKKFIAWTSGVSDIVITFQSLTEEREGELVERMTVIKSLNPEFEPTSYE 240

Query: 241 FKVSTSDHGRHVLDIRRIENNKKK 264
           F+V+ +  G H LD R+IEN + K
Sbjct: 241 FRVTATGTGSHALDFRKIENKRDK 264


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98397415
Number of Sequences: 2977
Number of extensions: 4039972
Number of successful extensions: 10558
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10556
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 189,106,746
effective HSP length: 56
effective length of query: 209
effective length of database: 155,591,474
effective search space: 32518618066
effective search space used: 32518618066
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)