BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2069 (PAB2069) DE:ABC transporter, ATP-binding protein,
putative
(255 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75157 abc transporter, ATP-binding protein, puta tive PAB2... 506 e-143
pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii ... 424 e-118
pir||F75157 probable ABC transporter, ATP-binding protein PAB207... 125 4e-28
pir||H71196 hypothetical protein PH1846 - Pyrococcus horikoshii ... 120 1e-26
pir||H72483 hypothetical protein APE2512 - Aeropyrum pernix (str... 83 2e-15
pir||A69065 conserved hypothetical protein MTH1486 - Methanobact... 82 5e-15
pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (str... 81 1e-14
pir||B72267 conserved hypothetical protein - Thermotoga maritima... 77 2e-13
gb|AAK42767.1| Conserved hypothetical protein [Sulfolobus solfat... 75 7e-13
pir||B69012 probable membrane protein MTH1092 - Methanobacterium... 69 5e-11
>pir||G75157 abc transporter, ATP-binding protein, puta tive PAB2069 -
Pyrococcus abyssi (strain Orsay)
>gi|5457852|emb|CAB49342.1| (AJ248284) ABC transporter,
ATP-binding protein, puta tive [Pyrococcus abyssi]
Length = 255
Score = 506 bits (1290), Expect = e-143
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MFFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWW 60
MFFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWW
Sbjct: 1 MFFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWW 60
Query: 61 VSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGIL 120
VSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGIL
Sbjct: 61 VSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGIL 120
Query: 121 MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF 180
MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF
Sbjct: 121 MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF 180
Query: 181 FPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVF 240
FPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVF
Sbjct: 181 FPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVF 240
Query: 241 KWAEKITRMMGYGGY 255
KWAEKITRMMGYGGY
Sbjct: 241 KWAEKITRMMGYGGY 255
>pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii
>gi|3258286|dbj|BAA30969.1| (AP000007) 255aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 255
Score = 424 bits (1078), Expect = e-118
Identities = 198/255 (77%), Positives = 232/255 (90%)
Query: 1 MFFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWW 60
MFFRYPLRVISS++VGLVFL+QFVYFGQAILGGRFS LLK +TG+GDYPTYVLIGY LWW
Sbjct: 1 MFFRYPLRVISSVLVGLVFLLQFVYFGQAILGGRFSGLLKNATGIGDYPTYVLIGYVLWW 60
Query: 61 VSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGIL 120
+S SPMEASVWGVRRELQRGTFESNV SPTGILKM+IGLA++WM+MDS++MLIVF G++
Sbjct: 61 ISASPMEASVWGVRRELQRGTFESNVISPTGILKMVIGLAVSWMMMDSIIMLIVFGLGVI 120
Query: 121 MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF 180
+F I IS ++K P+LLL+F TFLGFG++FAGLV+MLKNIGP+A++ E +ILFLSGVF
Sbjct: 121 IFNIKISVIYVIKVIPILLLAFATFLGFGIVFAGLVVMLKNIGPLATVFELIILFLSGVF 180
Query: 181 FPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVF 240
FPLSTLP +R++SW IPLTHAA+AVRKLFLGFSYSS+ SEL +MLILLP+YW ISLGVF
Sbjct: 181 FPLSTLPDFIRKISWIIPLTHAASAVRKLFLGFSYSSIISELNAMLILLPIYWMISLGVF 240
Query: 241 KWAEKITRMMGYGGY 255
KWAE+ITRMMGYGGY
Sbjct: 241 KWAERITRMMGYGGY 255
>pir||F75157 probable ABC transporter, ATP-binding protein PAB2071 - Pyrococcus
abyssi (strain Orsay) >gi|5457851|emb|CAB49341.1|
(AJ248284) ABC transporter, ATP-binding protein,
putative [Pyrococcus abyssi]
Length = 272
Score = 125 bits (312), Expect = 4e-28
Identities = 71/255 (27%), Positives = 131/255 (50%), Gaps = 1/255 (0%)
Query: 1 MFFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWW 60
+F Y +S I++GL F+ + G + G R S L TG DY T+ ++G+ +
Sbjct: 19 IFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAELTGYSDYLTFAVLGFMVLG 78
Query: 61 VSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGIL 120
++ + VW + EL GT E + A+P + +G + +++ + M I
Sbjct: 79 FGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLMVSLIYMAIYIPIFYF 138
Query: 121 MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF 180
+F++ ++ LLK VLLL + +G GLM +G+V+ LK+ GP +ILE ++ LSG
Sbjct: 139 LFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPFINILEMLVFALSGAM 198
Query: 181 FPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVF 240
+P+ LP ++ L+ +P +AVR + SS+ ++ M ++ +Y + + +
Sbjct: 199 YPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSI-DKIAYMAMVSLVYAILGILAY 257
Query: 241 KWAEKITRMMGYGGY 255
+W+E+ R +G Y
Sbjct: 258 RWSERKAREVGLKSY 272
>pir||H71196 hypothetical protein PH1846 - Pyrococcus horikoshii
>gi|3258284|dbj|BAA30967.1| (AP000007) 273aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 273
Score = 120 bits (299), Expect = 1e-26
Identities = 72/251 (28%), Positives = 126/251 (49%), Gaps = 1/251 (0%)
Query: 5 YPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWWVSVS 64
Y IS I++G F + G + G R S L +G DY T+ ++G+ + V+
Sbjct: 24 YKAWFISDILMGFFFAGNALLIGLGLTGKRTSEALAKLSGYSDYLTFAILGFMVLTFGVT 83
Query: 65 PMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGILMFQI 124
M VW + EL GT ES+ A+P + +G M ++++ + + I + F +
Sbjct: 84 FMSGFVWSIVDELYAGTLESSFAAPMRRITFFLGSIMVRLILNLLYIGIYIPIFWITFGL 143
Query: 125 PISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVFFPLS 184
+ +LLK VL++ +G GL+ AG+V+ LK+ GP ILE ++ LSG +P+
Sbjct: 144 EVDLINLLKGIVVLVIGAFGMMGLGLIAAGIVIYLKDPGPFIDILEMLVFALSGAMYPVK 203
Query: 185 TLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVFKWAE 244
LP ++ ++ +P AVRK+ L S E++ +L++ Y + + ++WAE
Sbjct: 204 ILPKPLQIMANLLPYAPTTEAVRKVAL-VGLSKSIEEILYLLLISATYSLLGVISYRWAE 262
Query: 245 KITRMMGYGGY 255
+ R +G Y
Sbjct: 263 RRAREVGLKSY 273
>pir||H72483 hypothetical protein APE2512 - Aeropyrum pernix (strain K1)
>gi|5106217|dbj|BAA81528.1| (AP000064) 268aa long
hypothetical protein [Aeropyrum pernix]
Length = 268
Score = 83.5 bits (203), Expect = 2e-15
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 15/241 (6%)
Query: 18 VFLIQFVYFGQAILGGR--FSALLKASTGVGDYPTYVLIGYTLWWVSVSPMEASVWGVRR 75
+F+I + + GG F AL G DY +V IG++L+ + + + + R
Sbjct: 31 MFMIATAWAVSRLAGGASPFEAL-----GYKDYVAFVAIGFSLYSLLTATLFDVGERLHR 85
Query: 76 ELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGILMFQIPISAHSLLKTS 135
EL +GT E+ + +P + G A+ + + + ++IV + ++F S LK +
Sbjct: 86 ELVQGTLEAILVTPASRFSWLFGNALGSLGVSLLDLVIVLAYYTIIFG---SGSLHLKAA 142
Query: 136 P----VLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVFFPLSTLPGVVR 191
P VL L F+ +G GL+ G+++ LK +L ++ LSG+ FP+ LP +
Sbjct: 143 PQAAAVLGLGFIGMVGMGLLLGGIIVNLKEPHAFNVMLTPFLMLLSGMMFPVEVLPSPLD 202
Query: 192 ELSWAIPLTHAANAVRKLFL-GFSYSSVYSELVSMLILLPLYWAISLGVFKWAEKITRMM 250
+ IPLT AVR L L G SSV L+ + I Y VFK E+ R
Sbjct: 203 TAAELIPLTLTLEAVRSLLLKGGGISSVEGLLIKLAIEAVAYTLAGYMVFKTLEEKARRS 262
Query: 251 G 251
G
Sbjct: 263 G 263
>pir||A69065 conserved hypothetical protein MTH1486 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622602|gb|AAB85961.1| (AE000909) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 383
Score = 82.3 bits (200), Expect = 5e-15
Identities = 47/165 (28%), Positives = 94/165 (56%), Gaps = 4/165 (2%)
Query: 47 DYPTYVLIGYTLWWVSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLM 106
D+ ++ T+ + + M S+ G R +RG +PT + ++ G ++ +++
Sbjct: 189 DFLVPAILAMTIMFSCMFGMGQSIAGER---ERGELARLFMTPTSVATVVGGKIISKLVI 245
Query: 107 DSVVMLIVFIFGILMFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMA 166
+S L++ IL+F I I+ S+L T +L+L+ L F+GFG+M + V ++ M
Sbjct: 246 ESGRALLLLFIAILLFGIKING-SMLLTVLLLILTALCFVGFGIMISARVGTQEDYMQMV 304
Query: 167 SILEFVILFLSGVFFPLSTLPGVVRELSWAIPLTHAANAVRKLFL 211
++F+SGVF+P+ T+P + +++++ +PLT+A NA+R + L
Sbjct: 305 MPFAMPMMFVSGVFYPIETMPWIFQKIAYVVPLTYANNALRAVML 349
>pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (strain K1)
>gi|5106219|dbj|BAA81530.1| (AP000064) 275aa long
hypothetical protein [Aeropyrum pernix]
Length = 275
Score = 81.1 bits (197), Expect = 1e-14
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 18/253 (7%)
Query: 9 VISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWWVSVSPMEA 68
+I+S+I +++ +Y +A+LG L K DY ++++G L +S A
Sbjct: 28 IINSLIQPIIWTYILIYTYRAVLGETAQTLQKHGWPA-DYVGFLILGQVL----LSLFNA 82
Query: 69 SVW----GVRRELQRGTFESNVASPTGILKMIIGLAMAWML----MDSVVMLIVFIFGIL 120
W ++RE GT E +P L M+ G ++ +L + LIVF+
Sbjct: 83 LNWRAGMAIQRERWFGTLEIVFLTPASRLVMLTGSSIYGLLDAGWVSFSAALIVFLATGT 142
Query: 121 MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF 180
F I +LL S ++ + + G+ AGL ++ ++ GP+A ++ + F SG
Sbjct: 143 GFNIADPLAALLSVS----MAVVGAVSMGIGLAGLYVLTRSAGPIAIAIQHPLRFFSGSS 198
Query: 181 FPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVF 240
FPLS LP ++ + +A+PLT+ A R L + S L+ L L+ L I+ +F
Sbjct: 199 FPLSILPASLQYIGYALPLTYGIEAARISLLEGAPIDEVSPLILRLALISLVGIIAGILF 258
Query: 241 -KWAEKITRMMGY 252
+WAE + + G+
Sbjct: 259 VRWAESLAKKYGW 271
>pir||B72267 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981885|gb|AAD36398.1|AE001787_3 (AE001787)
conserved hypothetical protein [Thermotoga maritima]
Length = 285
Score = 77.3 bits (187), Expect = 2e-13
Identities = 56/252 (22%), Positives = 120/252 (47%), Gaps = 4/252 (1%)
Query: 1 MFFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWW 60
++ Y +++ ++ G V ++QF + G+ I G + L++ G D Y + G
Sbjct: 32 IWLSYRTQLVLGLLSGFVGIVQFGFIGKFIAQGNYFPLIERYGG--DILAYFITGSVFMS 89
Query: 61 VSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGIL 120
+ + ++RE GT E + S T + ++ + ++ ++ + ++F+ +
Sbjct: 90 YTNLALMTFKGVIQREQSMGTLEYILLSKTPLWQLFLFSFVSSFFFTTLNITLIFLGLVY 149
Query: 121 MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF 180
+F + I+ + L+ VL L +G GL+ A +V++ K P+ + + SG++
Sbjct: 150 LFSVHITPN-FLEALVVLFTVMLPLMGIGLLSASIVLVTKRGDPVGWLYTTLSGLFSGIY 208
Query: 181 FPLSTLPGVVRELSWAIPLTHAANAVRKLFL-GFSYSSVYSELVSMLILLPLYWAISLGV 239
FP+ LP +R +S+ IP T+ + +R++ + G SSV LV + + + +
Sbjct: 209 FPVEILPDWIRPVSYLIPSTYGIDLLRRVLMRGEHLSSVSEGLVLLAATGTVLISAGIVA 268
Query: 240 FKWAEKITRMMG 251
FK + R+ G
Sbjct: 269 FKRSFNQARLRG 280
>gb|AAK42767.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 271
Score = 75.3 bits (182), Expect = 7e-13
Identities = 59/232 (25%), Positives = 107/232 (45%), Gaps = 13/232 (5%)
Query: 14 IVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWWVSVSPMEASVWGV 73
++G V + YF LG R L GV +Y + IG S + +
Sbjct: 34 VLGWVLPVFTYYFTGTALGNR----LVNEVGVSNYTAFFTIGLAFQGYVSSVISTISQRL 89
Query: 74 RRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGILMFQIPISAH-SLL 132
R E GT E V S TG ++ A+ + ++++ +I+ G F + I + +++
Sbjct: 90 RNEQLYGTIEYYVISRTGTFGFLLYSALWGLTLNTINAIIILAVG---FALNIHYNVNIV 146
Query: 133 KTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVFFPLSTLPGVVRE 192
+++L L+ LG G++ + M+ K P++ L G FP++ LP VR
Sbjct: 147 SAIVIIVLLILSTLGIGMIAGAVTMVTKQGNPISFFFNTFTNLLGGTVFPVTVLPLYVRY 206
Query: 193 LSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLY--WAISLGVFKW 242
+S+ IPLT A +R+ FL + +++ +I+L ++ + LGVF +
Sbjct: 207 ISYGIPLTWALEGLREAFLN---GAPITDIAPFIIILTIFDIVLLPLGVFSY 255
>pir||B69012 probable membrane protein MTH1092 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622193|gb|AAB85581.1| (AE000880) putative membrane
protein [Methanobacterium thermoautotrophicum]
Length = 257
Score = 69.1 bits (166), Expect = 5e-11
Identities = 63/256 (24%), Positives = 116/256 (44%), Gaps = 26/256 (10%)
Query: 2 FFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYV---LIGYTL 58
FFRY R+++SI+ L++LI I G A ++ G Y ++ +IG T+
Sbjct: 21 FFRYRSRIVTSIVTPLLWLI--------IFGTGLGAAVRFGGVPGGYKAFIYPGIIGQTV 72
Query: 59 WWVSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAM----AWMLMDSVVMLIV 114
+ S+ S V + Q G + + +P M++G A+ A M+ ++++ +
Sbjct: 73 LFTSIF----SGVSVIIDRQYGFLKEILVAPISRESMVVGKALGISTASMIQAAILLALS 128
Query: 115 FIFGILMFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVIL 174
FI GI M S + + + L+ + G GL+ A ++ + S + I
Sbjct: 129 FIVGITM-----SPQCFIVSMVIALIISMGLGGLGLVIAAFTDSMEGFNLIMSFIVLPIF 183
Query: 175 FLSGVFFPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWA 234
LSG FP++ LP ++ + PLT+A +A+R L S + L+ + I + A
Sbjct: 184 LLSGALFPITGLPAWLQGAVYINPLTYAVDALRFTILRRSVLPLEVNLLVITIFAVI--A 241
Query: 235 ISLGVFKWAEKITRMM 250
+ + F + K +M
Sbjct: 242 VLIAAFLFNRKEQNLM 257
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.145 0.447
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89902254
Number of Sequences: 2977
Number of extensions: 3580788
Number of successful extensions: 12605
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12593
Number of HSP's gapped (non-prelim): 11
length of query: 255
length of database: 189,106,746
effective HSP length: 49
effective length of query: 206
effective length of database: 159,780,883
effective search space: 32914861898
effective search space used: 32914861898
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)