BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2071 (PAB2071) DE:ABC transporter, ATP-binding protein,
putative
(272 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75157 probable ABC transporter, ATP-binding protein PAB207... 531 e-150
pir||H71196 hypothetical protein PH1846 - Pyrococcus horikoshii ... 413 e-114
pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii ... 129 5e-29
pir||G75157 abc transporter, ATP-binding protein, puta tive PAB2... 125 4e-28
pir||H72483 hypothetical protein APE2512 - Aeropyrum pernix (str... 123 2e-27
pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (str... 87 2e-16
pir||B72568 hypothetical protein APE1828 - Aeropyrum pernix (str... 85 1e-15
gb|AAK42767.1| Conserved hypothetical protein [Sulfolobus solfat... 73 5e-12
pir||B72267 conserved hypothetical protein - Thermotoga maritima... 72 6e-12
>pir||F75157 probable ABC transporter, ATP-binding protein PAB2071 - Pyrococcus
abyssi (strain Orsay) >gi|5457851|emb|CAB49341.1|
(AJ248284) ABC transporter, ATP-binding protein,
putative [Pyrococcus abyssi]
Length = 272
Score = 531 bits (1352), Expect = e-150
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MEATELRALLGVARKSWKIFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAEL 60
MEATELRALLGVARKSWKIFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAEL
Sbjct: 1 MEATELRALLGVARKSWKIFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAEL 60
Query: 61 TGYSDYLTFAVLGFMVLGFGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLV 120
TGYSDYLTFAVLGFMVLGFGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLV
Sbjct: 61 TGYSDYLTFAVLGFMVLGFGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLV 120
Query: 121 RLMVSLIYMAIYIPIFYFLFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDP 180
RLMVSLIYMAIYIPIFYFLFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDP
Sbjct: 121 RLMVSLIYMAIYIPIFYFLFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDP 180
Query: 181 GPFINILEMLVFALSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSIDKIA 240
GPFINILEMLVFALSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSIDKIA
Sbjct: 181 GPFINILEMLVFALSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSIDKIA 240
Query: 241 YMAMVSLVYAILGILAYRWSERKAREVGLKSY 272
YMAMVSLVYAILGILAYRWSERKAREVGLKSY
Sbjct: 241 YMAMVSLVYAILGILAYRWSERKAREVGLKSY 272
>pir||H71196 hypothetical protein PH1846 - Pyrococcus horikoshii
>gi|3258284|dbj|BAA30967.1| (AP000007) 273aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 273
Score = 413 bits (1050), Expect = e-114
Identities = 194/268 (72%), Positives = 239/268 (88%)
Query: 5 ELRALLGVARKSWKIFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAELTGYS 64
EL AL GVARK+WKI +SYKAWF+SDILMG FF GNALLIGLGLTGKR SEALA+L+GYS
Sbjct: 6 ELEALKGVARKNWKILISYKAWFISDILMGFFFAGNALLIGLGLTGKRTSEALAKLSGYS 65
Query: 65 DYLTFAVLGFMVLGFGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLMV 124
DYLTFA+LGFMVL FG+TF+SGFVW+IVDELYAGTLE SFAAPMRRITFFLG+++VRL++
Sbjct: 66 DYLTFAILGFMVLTFGVTFMSGFVWSIVDELYAGTLESSFAAPMRRITFFLGSIMVRLIL 125
Query: 125 SLIYMAIYIPIFYFLFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPFI 184
+L+Y+ IYIPIF+ F LE++LI LLKGI VL++G GM+GLGL+A+GIV+YLKDPGPFI
Sbjct: 126 NLLYIGIYIPIFWITFGLEVDLINLLKGIVVLVIGAFGMMGLGLIAAGIVIYLKDPGPFI 185
Query: 185 NILEMLVFALSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSIDKIAYMAM 244
+ILEMLVFALSGAMYP++ILP+PLQ +A++LPYAPTT AVR V G SI++I Y+ +
Sbjct: 186 DILEMLVFALSGAMYPVKILPKPLQIMANLLPYAPTTEAVRKVALVGLSKSIEEILYLLL 245
Query: 245 VSLVYAILGILAYRWSERKAREVGLKSY 272
+S Y++LG+++YRW+ER+AREVGLKSY
Sbjct: 246 ISATYSLLGVISYRWAERRAREVGLKSY 273
>pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii
>gi|3258286|dbj|BAA30969.1| (AP000007) 255aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 255
Score = 129 bits (320), Expect = 5e-29
Identities = 69/255 (27%), Positives = 135/255 (52%), Gaps = 1/255 (0%)
Query: 19 IFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAELTGYSDYLTFAVLGFMVLG 78
+F Y +S +L+GL F+ + G + G R S L TG DY T+ ++G+++
Sbjct: 1 MFFRYPLRVISSVLVGLVFLLQFVYFGQAILGGRFSGLLKNATGIGDYPTYVLIGYVLWW 60
Query: 79 FGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLMVSLIYMAIYIPIFYF 138
+ + VW + EL GT E + +P + +G + +M+ I M I +
Sbjct: 61 ISASPMEASVWGVRRELQRGTFESNVISPTGILKMVIGLAVSWMMMDSIIMLIVFGLGVI 120
Query: 139 LFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPFINILEMLVFALSGAM 198
+F +++++I ++K I +LLL +G G++ +G+V+ LK+ GP + E+++ LSG
Sbjct: 121 IFNIKISVIYVIKVIPILLLAFATFLGFGIVFAGLVVMLKNIGPLATVFELIILFLSGVF 180
Query: 199 YPIEILPRPLQFLASILPYAPTTSAVRSV-VARGFISSIDKIAYMAMVSLVYAILGILAY 257
+P+ LP ++ ++ I+P SAVR + + + S I ++ M ++ +Y ++ + +
Sbjct: 181 FPLSTLPDFIRKISWIIPLTHAASAVRKLFLGFSYSSIISELNAMLILLPIYWMISLGVF 240
Query: 258 RWSERKAREVGLKSY 272
+W+ER R +G Y
Sbjct: 241 KWAERITRMMGYGGY 255
>pir||G75157 abc transporter, ATP-binding protein, puta tive PAB2069 -
Pyrococcus abyssi (strain Orsay)
>gi|5457852|emb|CAB49342.1| (AJ248284) ABC transporter,
ATP-binding protein, puta tive [Pyrococcus abyssi]
Length = 255
Score = 125 bits (312), Expect = 4e-28
Identities = 71/255 (27%), Positives = 131/255 (50%), Gaps = 1/255 (0%)
Query: 19 IFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAELTGYSDYLTFAVLGFMVLG 78
+F Y +S I++GL F+ + G + G R S L TG DY T+ ++G+ +
Sbjct: 1 MFFRYPLRVISSIIVGLVFLIQFVYFGQAILGGRFSALLKASTGVGDYPTYVLIGYTLWW 60
Query: 79 FGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLMVSLIYMAIYIPIFYF 138
++ + VW + EL GT E + A+P + +G + +++ + M I
Sbjct: 61 VSVSPMEASVWGVRRELQRGTFESNVASPTGILKMIIGLAMAWMLMDSVVMLIVFIFGIL 120
Query: 139 LFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPFINILEMLVFALSGAM 198
+F++ ++ LLK VLLL + +G GLM +G+V+ LK+ GP +ILE ++ LSG
Sbjct: 121 MFQIPISAHSLLKTSPVLLLSFLTFLGFGLMFAGLVMMLKNIGPMASILEFVILFLSGVF 180
Query: 199 YPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSI-DKIAYMAMVSLVYAILGILAY 257
+P+ LP ++ L+ +P +AVR + SS+ ++ M ++ +Y + + +
Sbjct: 181 FPLSTLPGVVRELSWAIPLTHAANAVRKLFLGFSYSSVYSELVSMLILLPLYWAISLGVF 240
Query: 258 RWSERKAREVGLKSY 272
+W+E+ R +G Y
Sbjct: 241 KWAEKITRMMGYGGY 255
>pir||H72483 hypothetical protein APE2512 - Aeropyrum pernix (strain K1)
>gi|5106217|dbj|BAA81528.1| (AP000064) 268aa long
hypothetical protein [Aeropyrum pernix]
Length = 268
Score = 123 bits (306), Expect = 2e-27
Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 9/251 (3%)
Query: 23 YKAW--FVSDILMGLFFVGNALLIGLGLTGKRNSEALAELTGYSDYLTFAVLGFMVLGFG 80
Y W + + + +F + A + G EAL GY DY+ F +GF +
Sbjct: 17 YSTWGFMLVRLSVPMFMIATAWAVSRLAGGASPFEAL----GYKDYVAFVAIGFSLYSLL 72
Query: 81 ITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLMVSLIYMAIYIPIFYFLF 140
L + EL GTLE P R ++ GN L L VSL+ + I + + +F
Sbjct: 73 TATLFDVGERLHRELVQGTLEAILVTPASRFSWLFGNALGSLGVSLLDLVIVLAYYTIIF 132
Query: 141 KL-ELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPFINILEMLVFALSGAMY 199
L+L + AVL LG +GM+G+GL+ GI++ LK+P F +L + LSG M+
Sbjct: 133 GSGSLHLKAAPQAAAVLGLGFIGMVGMGLLLGGIIVNLKEPHAFNVMLTPFLMLLSGMMF 192
Query: 200 PIEILPRPLQFLASILPYAPTTSAVRSVVAR-GFISSIDKIAY-MAMVSLVYAILGILAY 257
P+E+LP PL A ++P T AVRS++ + G ISS++ + +A+ ++ Y + G + +
Sbjct: 193 PVEVLPSPLDTAAELIPLTLTLEAVRSLLLKGGGISSVEGLLIKLAIEAVAYTLAGYMVF 252
Query: 258 RWSERKAREVG 268
+ E KAR G
Sbjct: 253 KTLEEKARRSG 263
>pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (strain K1)
>gi|5106219|dbj|BAA81530.1| (AP000064) 275aa long
hypothetical protein [Aeropyrum pernix]
Length = 275
Score = 87.0 bits (212), Expect = 2e-16
Identities = 65/269 (24%), Positives = 127/269 (47%), Gaps = 11/269 (4%)
Query: 6 LRALLGVARKSWKIFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAELTGYSD 65
+R VA + +KI ++Y W ++ ++ + + + + G+ ++ L + +D
Sbjct: 7 VRVAKAVALRDFKIRITYIPWIINSLIQPIIWTYILIYTYRAVLGE-TAQTLQKHGWPAD 65
Query: 66 YLTFAVLGFMVLGF--GITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLM 123
Y+ F +LG ++L + + +G AI E + GTLE F P R+ G+ + L+
Sbjct: 66 YVGFLILGQVLLSLFNALNWRAGM--AIQRERWFGTLEIVFLTPASRLVMLTGSSIYGLL 123
Query: 124 VSLIYMAIYIPIFYFLFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPF 183
+ I + N+ L + + + VG + +G+ +G+ + + GP
Sbjct: 124 DAGWVSFSAALIVFLATGTGFNIADPLAALLSVSMAVVGAVSMGIGLAGLYVLTRSAGPI 183
Query: 184 INILEMLVFALSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSIDKIA--- 240
++ + SG+ +P+ ILP LQ++ LP A R + G + ID+++
Sbjct: 184 AIAIQHPLRFFSGSSFPLSILPASLQYIGYALPLTYGIEAARISLLEG--APIDEVSPLI 241
Query: 241 -YMAMVSLVYAILGILAYRWSERKAREVG 268
+A++SLV I GIL RW+E A++ G
Sbjct: 242 LRLALISLVGIIAGILFVRWAESLAKKYG 270
>pir||B72568 hypothetical protein APE1828 - Aeropyrum pernix (strain K1)
>gi|5105518|dbj|BAA80831.1| (AP000062) 287aa long
hypothetical protein [Aeropyrum pernix]
Length = 287
Score = 84.7 bits (206), Expect = 1e-15
Identities = 60/219 (27%), Positives = 113/219 (51%), Gaps = 11/219 (5%)
Query: 60 LTGYSDYLTFAVLGFMVLGFGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFL--GN 117
+TG D L F + V + + +++ + GTL Y A R + L G
Sbjct: 73 VTGVEDPLIFLAVASAVAFTAVGIIDYTSNSLLWHRWLGTLPYVILASPRFTVYLLASGT 132
Query: 118 VLVRLMVSLIYMAIYIPIFYFLFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYL 177
L V++ Y++I +P+ L L+ + L+ +A++LLG + ++G+ ++AS + +
Sbjct: 133 ALTVFSVAINYVSI-VPLILVLGGLD-SFFRLMVIVAIVLLGMIPLMGIAIVASLLSIVA 190
Query: 178 KDPGPFINILEMLVFALSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSID 237
++ G + L L+ LSG YP+E+LPR L++ + I+P + + V GF +
Sbjct: 191 REEGNVLGFLNPLLLLLSGVFYPVELLPRILEWASKIIPVTYVVESAKLV--SGFDAPGV 248
Query: 238 KIAYM-----AMVSLVYAILGILAYRWSERKAREVGLKS 271
K+ Y+ A++SL+Y + G+LA + E+ A+ G+ S
Sbjct: 249 KVIYIVLYAFALMSLLYNVGGVLALEYLEKVAQRRGVSS 287
>gb|AAK42767.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 271
Score = 72.6 bits (175), Expect = 5e-12
Identities = 58/259 (22%), Positives = 115/259 (44%), Gaps = 15/259 (5%)
Query: 15 KSWKIFLSYKAWFVSDILMGLFFVGNALLIGLGLTGKRNSEALAELTGYSDYLTFAVLGF 74
+ +K+++SY+ V +L + V G L + +E G S+Y F +G
Sbjct: 18 RGFKVWVSYRTQTVLTVLGWVLPVFTYYFTGTALGNRLVNEV-----GVSNYTAFFTIGL 72
Query: 75 MVLGFGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLMVSLIYMAIYIP 134
G+ + +S + +E GT+EY + F L + L L ++ I I +
Sbjct: 73 AFQGYVSSVISTISQRLRNEQLYGTIEYYVISRTGTFGFLLYSALWGLTLNTINAIIILA 132
Query: 135 IFYFL-FKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPFINILEMLVFA 193
+ + L +N++ + I +L+L T +G+G++A + + K P
Sbjct: 133 VGFALNIHYNVNIVSAIVIIVLLILST---LGIGMIAGAVTMVTKQGNPISFFFNTFTNL 189
Query: 194 LSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARGFISSIDKIAYMAMVSLVYAI-- 251
L G ++P+ +LP +++++ +P +R G + I IA ++ ++ I
Sbjct: 190 LGGTVFPVTVLPLYVRYISYGIPLTWALEGLREAFLNG--APITDIAPFIIILTIFDIVL 247
Query: 252 --LGILAYRWSERKAREVG 268
LG+ +Y + +KARE G
Sbjct: 248 LPLGVFSYNHAFKKAREKG 266
>pir||B72267 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981885|gb|AAD36398.1|AE001787_3 (AE001787)
conserved hypothetical protein [Thermotoga maritima]
Length = 285
Score = 72.2 bits (174), Expect = 6e-12
Identities = 71/265 (26%), Positives = 121/265 (44%), Gaps = 13/265 (4%)
Query: 14 RKSWKIFLSYKAWFVSDILMGLFFVGNALLIGLGLTGK----RNSEALAELTGYSDYLTF 69
RK I+LSY+ V +L G FVG ++ G GK N L E G D L +
Sbjct: 27 RKDILIWLSYRTQLVLGLLSG--FVG---IVQFGFIGKFIAQGNYFPLIERYG-GDILAY 80
Query: 70 AVLGFMVLGFGITFLSGFVWAIVDELYAGTLEYSFAAPMRRITFFLGNVLVRLMVSLIYM 129
+ G + + + L F I E GTLEY + FL + + + + +
Sbjct: 81 FITGSVFMSYTNLALMTFKGVIQREQSMGTLEYILLSKTPLWQLFLFSFVSSFFFTTLNI 140
Query: 130 AIYIPIFYFLFKLELNLIGLLKGIAVLLLGTVGMIGLGLMASGIVLYLKDPGPFINILEM 189
+ +LF + + L+ + VL + ++G+GL+++ IVL K P +
Sbjct: 141 TLIFLGLVYLFSVHITP-NFLEALVVLFTVMLPLMGIGLLSASIVLVTKRGDPVGWLYTT 199
Query: 190 LVFALSGAMYPIEILPRPLQFLASILPYAPTTSAVRSVVARG-FISSIDK-IAYMAMVSL 247
L SG +P+EILP ++ ++ ++P +R V+ RG +SS+ + + +A
Sbjct: 200 LSGLFSGIYFPVEILPDWIRPVSYLIPSTYGIDLLRRVLMRGEHLSSVSEGLVLLAATGT 259
Query: 248 VYAILGILAYRWSERKAREVGLKSY 272
V GI+A++ S +AR G S+
Sbjct: 260 VLISAGIVAFKRSFNQARLRGSLSW 284
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.147 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91184893
Number of Sequences: 2977
Number of extensions: 3708226
Number of successful extensions: 12624
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12611
Number of HSP's gapped (non-prelim): 9
length of query: 272
length of database: 189,106,746
effective HSP length: 52
effective length of query: 220
effective length of database: 157,985,422
effective search space: 34756792840
effective search space used: 34756792840
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)