BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2073 (racD-2) DE:aspartate racemase
(232 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75157 aspartate racemase PAB2073 - Pyrococcus abyssi (stra... 459 e-128
pir||H71181 probable aspartate racemase - Pyrococcus horikoshii ... 420 e-117
gb|AAD29652.1|AF124757_12 (AF124757) aspartate racemase [Zymomon... 165 4e-40
pir||E81424 probable amino acid recemase Cj0085c [imported] - Ca... 161 5e-39
gb|AAD54635.1|AF081588_2 (AF081588) aspartate racemase [Zymomona... 158 6e-38
gi|11499017 aspartate racemase [Archaeoglobus fulgidus] >gi|7444... 148 7e-35
sp|P03813|YGEA_ECOLI HYPOTHETICAL 25.2 KD PROTEIN IN LYSR-ARAE I... 130 1e-29
pir||D75048 aspartate racemase PAB0912 - Pyrococcus abyssi (stra... 122 3e-27
pir||T08467 aspartate racemase (EC 5.1.1.13) - Desulfurococcus s... 113 1e-24
dbj|BAA35091.1| (AB015880) aspartate racemase [Thermococcus sp. ... 112 3e-24
pir||G71112 probable aspartate racemase - Pyrococcus horikoshii ... 112 4e-24
dbj|BAA13556.1| (D88189) LysA activator protein [Actinobacillus ... 99 5e-20
sp|P32960|RACX_BACSU PROBABLE AMINO ACID RACEMASE >gi|541393|pir... 90 3e-17
emb|CAB08017.1| (Z94043) amino acid racemase [Bacillus subtilis]... 90 3e-17
sp|P29079|RACD_STRTR ASPARTATE RACEMASE >gi|79944|pir||S16175 as... 82 8e-15
pir||S60208 fomE protein - Streptomyces wedmorensis >gi|1061000|... 68 7e-11
>pir||B75157 aspartate racemase PAB2073 - Pyrococcus abyssi (strain Orsay)
>gi|5457847|emb|CAB49337.1| (AJ248284) aspartate
racemase [Pyrococcus abyssi]
Length = 232
Score = 459 bits (1169), Expect = e-128
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREFFQNPEGWEGRKK 60
MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREFFQNPEGWEGRKK
Sbjct: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREFFQNPEGWEGRKK 60
Query: 61 ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL 120
ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL
Sbjct: 61 ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL 120
Query: 121 LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIERY 180
LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIERY
Sbjct: 121 LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIERY 180
Query: 181 KESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASSDEPAQR 232
KESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASSDEPAQR
Sbjct: 181 KESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASSDEPAQR 232
>pir||H71181 probable aspartate racemase - Pyrococcus horikoshii
>gi|3258164|dbj|BAA30847.1| (AP000007) 226aa long
hypothetical aspartate racemase [Pyrococcus horikoshii]
Length = 226
Score = 420 bits (1069), Expect = e-117
Identities = 206/225 (91%), Positives = 222/225 (98%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREFFQNPEGWEGRKK 60
MKKIGIIGGTTPESTLYYY+KYIEISREKFEKY YPELIIYSINF+EFFQNPEGWEGRKK
Sbjct: 1 MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEGWEGRKK 60
Query: 61 ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL 120
ILINAAKALERAGAELIAF+ANTPH+VFDDVQREVNVPMVSIIDAVAEE+++RGV++VLL
Sbjct: 61 ILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGVRKVLL 120
Query: 121 LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIERY 180
LGTKTTM+ADFYIK LE+KGLEVVVPNDEEKEELNRIIFEELAFG+LKNK+WIV+LIE+Y
Sbjct: 121 LGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKY 180
Query: 181 KESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELAS 225
+ESE IEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELAS
Sbjct: 181 RESEGIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELAS 225
>gb|AAD29652.1|AF124757_12 (AF124757) aspartate racemase [Zymomonas mobilis]
Length = 232
Score = 165 bits (414), Expect = 4e-40
Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 4/227 (1%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREFFQNPEGWEGRK- 59
MKK+G+IGG PESTL YY+K + + + YP L + S+N + + E + K
Sbjct: 1 MKKLGLIGGIGPESTLLYYKKLVYGANNRIGSQFYPNLTVESLNVFDILRLCEDKDYTKL 60
Query: 60 -KILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRV 118
L++ L AGA++IA + NTPHIVFDD+Q++ +VP++SI++A +EV R+ + +V
Sbjct: 61 TTYLMHGVNNLIAAGADVIALTGNTPHIVFDDLQKQSDVPLISIVEATCDEVKRQNITKV 120
Query: 119 LLLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNK--DWIVKL 176
LLGT+ TM ADF K L G+ V+ P +E + + I+ EL G + +
Sbjct: 121 GLLGTRFTMEADFIKKPLIANGMSVITPQPKEIDYIANKIYSELEKGIFSQNTLSEFISI 180
Query: 177 IERYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIEL 223
I R ++S+ IE +ILGCTELPL K + ++ D+ EIH+ L+ +
Sbjct: 181 ISRMRDSDGIEAIILGCTELPLLFKNTEFTITPLDTMEIHINALLNI 227
>pir||E81424 probable amino acid recemase Cj0085c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967579|emb|CAB72569.1|
(AL139074) putative amino acid recemase [Campylobacter
jejuni]
Length = 231
Score = 161 bits (404), Expect = 5e-39
Identities = 82/220 (37%), Positives = 142/220 (64%), Gaps = 5/220 (2%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREF--FQNPEGWEGR 58
MK IGIIGG + EST+ YY+ + +K + ++++YS+NF E Q+ + W+
Sbjct: 1 MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVNFEEIENLQSQDKWQEA 60
Query: 59 KKILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRV 118
+IL AK LE AGA I + NT H VFD++Q+ +N+P++ I + A+ + + ++++
Sbjct: 61 AQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPILHIAKSSAKALKQENIQKI 120
Query: 119 LLLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLK--NKDWIVKL 176
LLGTK TM+ DFY K L ++ + V+ P+DE+ + +N IIF EL G++K +K+ + +
Sbjct: 121 GLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDIIFNELCKGEIKQDSKEKYLNI 180
Query: 177 IERYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIH 216
I++ +E + +GV+L CTE+ L I + D ++++FD++ IH
Sbjct: 181 IKKLQE-KGAKGVLLACTEIGLLISKNDTNIKIFDTSLIH 219
>gb|AAD54635.1|AF081588_2 (AF081588) aspartate racemase [Zymomonas mobilis]
>gi|11095428|gb|AAG29868.1|AF313764_11 (AF313764)
aspartate racemase [Zymomonas mobilis]
Length = 229
Score = 158 bits (395), Expect = 6e-38
Identities = 86/228 (37%), Positives = 139/228 (60%), Gaps = 5/228 (2%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREF--FQNPEGWEGR 58
MKKIG+IGG + EST+ YYQ E R+ V +L+++S+NF E Q + W+
Sbjct: 1 MKKIGLIGGMSWESTVTYYQIINEAIRDARGGLVSADLLMHSLNFAEVVALQKADRWDDA 60
Query: 59 KKILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRV 118
K+L A L +AGA+ + NT H+V D V VP+++I+D A+ + + G KR
Sbjct: 61 AKLLGAAGAGLAKAGADCVLICTNTMHLVADAVAEISAVPLINIVDETAKALKKDGRKRP 120
Query: 119 LLLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLK--NKDWIVKL 176
LLL T+ TM FY ++ +GL+V+ P DE++ ++ +IF+EL G++K ++ +K+
Sbjct: 121 LLLATRYTMEHGFYTDRMKNQGLDVITPEDEDRGFVHDVIFDELCQGEVKESSRQGYLKI 180
Query: 177 IERYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELA 224
IE+ + +E ++ VILGCTE+PL IKQ + + +DS +IH ++ A
Sbjct: 181 IEKAR-AEGVDSVILGCTEIPLLIKQDMLDLPCYDSTQIHAEAAVKFA 227
>gi|11499017 aspartate racemase [Archaeoglobus fulgidus] >gi|7444690|pir||E69427
aspartate racemase homolog - Archaeoglobus fulgidus
>gi|2649148|gb|AAB89824.1| (AE001005) aspartate racemase
[Archaeoglobus fulgidus]
Length = 225
Score = 148 bits (369), Expect = 7e-35
Identities = 84/225 (37%), Positives = 135/225 (59%), Gaps = 10/225 (4%)
Query: 4 IGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREF--FQNPEGWEGRKKI 61
IG+IGG + EST+ YY+ E+ +EK + E+++YS+NF E Q W+ +I
Sbjct: 2 IGLIGGMSWESTVEYYRIMNEMVKEKLGGWNSAEVLLYSVNFEEIVSLQKAGEWDRLGEI 61
Query: 62 LINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLLL 121
L + A LE AGA+ + NT H V D V++ + +P+++IID AE + GVK+ LL
Sbjct: 62 LGDIAVKLENAGAKAVLICTNTMHKVADAVEKRIGIPLINIIDVTAEALKGDGVKKAGLL 121
Query: 122 GTKTTMSADFYIKALEKKGLEVVVPNDEE-KEELNRIIFEELAFGDLKNKDW--IVKLIE 178
GTK TM FY + ++K G+EV+VP EE + ++ IIF+EL G ++ + + K+++
Sbjct: 122 GTKFTMEDGFYQERMKKHGIEVIVPEKEEDRNAIHSIIFDELCLGIIREESERRLRKIVD 181
Query: 179 RYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIEL 223
KE EG+ILGCTELPL ++ E +++ ++H ++L
Sbjct: 182 ELKE-RGAEGIILGCTELPLILR----DEEFYNTTKLHAEAAVQL 221
>sp|P03813|YGEA_ECOLI HYPOTHETICAL 25.2 KD PROTEIN IN LYSR-ARAE INTERGENIC REGION
>gi|76226|pir||QQECK hypothetical 25.2K (lysR-araE
intergenic region) - Escherichia coli
>gi|145322|gb|AAA23470.1| (J03732) ORF X [Escherichia
coli] >gi|882733|gb|AAB40487.1| (U29581) alternate name
ygeA; orfX of J03732; ORF_f230 [Escherichia coli]
>gi|1128956|gb|AAA83863.1| (J01614) unknown protein
[Escherichia coli] >gi|1789205|gb|AAC75879.1| (AE000367)
putative resistance proteins [Escherichia coli K12]
Length = 230
Score = 130 bits (324), Expect = 1e-29
Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 6/221 (2%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREF--FQNPEGWEGR 58
MK IG++GG + EST+ YY+ E +++ +++++S++F E Q W+
Sbjct: 1 MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQRRGEWDKT 60
Query: 59 KKILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRV 118
IL AA L+RAGAE I NT H V D ++ +P + I DA + G+ RV
Sbjct: 61 GDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMTRV 120
Query: 119 LLLGTKTTMSADFYIKAL-EKKGLEVVVPNDEEKEELNRIIFEELAFGDL--KNKDWIVK 175
LLGT+ TM DFY L E+ + ++P +E+ ++N+IIFEEL G ++ + +
Sbjct: 121 ALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQIIFEELCLGQFTEASRAYCAQ 180
Query: 176 LIERYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIH 216
+I R E + +GVI GCTE+ L + + + VFD+A IH
Sbjct: 181 VIARLAE-QGAQGVIFGCTEIGLLVPEERSVLPVFDTAAIH 220
>pir||D75048 aspartate racemase PAB0912 - Pyrococcus abyssi (strain Orsay)
>gi|5458794|emb|CAB50281.1| (AJ248287) aspartate
racemase [Pyrococcus abyssi]
Length = 228
Score = 122 bits (304), Expect = 3e-27
Identities = 72/228 (31%), Positives = 135/228 (58%), Gaps = 7/228 (3%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYS---INFREFFQNPEGWEG 57
MK IGI+GG P +T+ +++ +E + K ++ +P++II++ I R F +G +
Sbjct: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQD-HPKIIIFNNPQIPDRTAFILGKGEDP 59
Query: 58 RKKILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKR 117
R + LI AK LE GA+ I NT H +D+++ + +P++S+I+ A++V G K+
Sbjct: 60 RPE-LIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKK 118
Query: 118 VLLLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLK-NKDWIVKL 176
V LL T T+++ Y K K G+EV++P ++E+EE+ + I++ + G+L+ K+ ++K
Sbjct: 119 VGLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIK- 177
Query: 177 IERYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELA 224
I R E E +I GCTE+ + + + D+ V + D ++ +++A
Sbjct: 178 IARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVA 225
>pir||T08467 aspartate racemase (EC 5.1.1.13) - Desulfurococcus sp. (strain SY)
>gi|1545809|dbj|BAA12209.1| (D84067) aspartate racemase
[Desulfurococcus sp.]
Length = 235
Score = 113 bits (281), Expect = 1e-24
Identities = 69/225 (30%), Positives = 131/225 (57%), Gaps = 8/225 (3%)
Query: 4 IGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYS---INFREFFQNPEGWEGRKK 60
IGI+GG P +T +++ +E + K ++ +P +IIY+ I R + G + R +
Sbjct: 6 IGILGGMGPLATAELFRRIVEKTPAKRDQE-HPRIIIYNNPKIPDRTAYILGRGEDPRPE 64
Query: 61 ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL 120
LIN+A+ LE GA+ I NT H +D+Q+ + +P+VS+++ AE V G+++V L
Sbjct: 65 -LINSARKLESWGADFIIMPCNTAHFFAEDIQKAIRIPLVSMVEETAERVKEMGLRKVGL 123
Query: 121 LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLK-NKDWIVKLIER 179
L T T+ Y +AL K+G+ +V P+ +E + I+ + G++ ++ ++++ +
Sbjct: 124 LATDGTIKGLVYHRALLKRGIAIVTPDRTGQELVMEGIYRGVKAGNVAYGRELLLRVAK- 182
Query: 180 YKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELA 224
K + ++G+I GCTE+ +A+K D+SV + D ++ K ++LA
Sbjct: 183 -KLEKRVDGIIAGCTEVSVALKPDDLSVPLIDPMDVIAEKSVKLA 226
>dbj|BAA35091.1| (AB015880) aspartate racemase [Thermococcus sp. KS-8]
Length = 232
Score = 112 bits (278), Expect = 3e-24
Identities = 69/225 (30%), Positives = 129/225 (56%), Gaps = 8/225 (3%)
Query: 4 IGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYS---INFREFFQNPEGWEGRKK 60
IGI+GG P +T +++ +E + K ++ +P +IIY+ I R F G + R +
Sbjct: 6 IGILGGMGPLATADLFRRIVEKTPAKRDQD-HPRIIIYNNPKIPDRTAFILGNGPDPRPE 64
Query: 61 ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL 120
LI +A+ LE GA+ I NT H +Q V P+VS+I+ A+ + G+++V L
Sbjct: 65 -LITSARKLEECGADFIIMPCNTAHFFAGTIQSSVIYPLVSMIEETAKRIEEMGLRKVGL 123
Query: 121 LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLK-NKDWIVKLIER 179
L T T+ Y +AL K+G+ + VPN +++ + + I+E + G+L+ ++ ++K+ ++
Sbjct: 124 LATDGTIKGMVYHRALLKRGIHIAVPNKKDQGLVMKAIYEGVKAGNLELGRELLLKVAKK 183
Query: 180 YKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELA 224
+ EG+I GCTE+ + +K GD++V + D ++ + ++LA
Sbjct: 184 LERRS--EGIIAGCTEVSVVLKPGDLTVPLIDPMDVIAERAVKLA 226
>pir||G71112 probable aspartate racemase - Pyrococcus horikoshii
>gi|3257078|dbj|BAA29761.1| (AP000003) 228aa long
hypothetical aspartate racemase [Pyrococcus horikoshii]
Length = 228
Score = 112 bits (277), Expect = 4e-24
Identities = 67/227 (29%), Positives = 127/227 (55%), Gaps = 5/227 (2%)
Query: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYS---INFREFFQNPEGWEG 57
MK IGI+GG P +T +++ + + K ++ +P++II++ I R + +G +
Sbjct: 1 MKTIGILGGMGPLATAELFRRIVIKTPAKRDQE-HPKVIIFNNPQIPDRTAYILGKGEDP 59
Query: 58 RKKILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKR 117
R + LI AK LE GA+ I NT H +D+++ + +P++S+I+ A++V G K+
Sbjct: 60 RPQ-LIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFKK 118
Query: 118 VLLLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLI 177
LL T T+ + Y K K G+E++ P ++E++++ R I+E + G+LK ++
Sbjct: 119 AGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKT 178
Query: 178 ERYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELA 224
+ E E +I GCTE+ + +KQ D+ V + D ++ +++A
Sbjct: 179 AKILEERGAECIIAGCTEVSVVLKQDDLKVPLIDPMDVIAEVAVKVA 225
>dbj|BAA13556.1| (D88189) LysA activator protein [Actinobacillus
actinomycetemcomitans]
Length = 143
Score = 98.7 bits (242), Expect = 5e-20
Identities = 52/128 (40%), Positives = 80/128 (61%), Gaps = 2/128 (1%)
Query: 38 LIIYSINFREFFQNPEG--WEGRKKILINAAKALERAGAELIAFSANTPHIVFDDVQREV 95
L++ S+NF E Q + W +IL A+ LE GAE I ANT H V D VQ +
Sbjct: 13 LLMSSVNFEEIVQCQKSGNWAKAGEILAEQARLLESIGAEGILIGANTMHKVADAVQNVI 72
Query: 96 NVPMVSIIDAVAEEVIRRGVKRVLLLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELN 155
+VP++ I+D VA+ + +G+ +V LLGT M+ +FY+ L ++G+E +VPND++K E++
Sbjct: 73 SVPLLHILDVVADSIKVQGLCKVALLGTHYVMADNFYVDGLRERGVEPIVPNDKDKLEIH 132
Query: 156 RIIFEELA 163
RII + A
Sbjct: 133 RIILKSFA 140
>sp|P32960|RACX_BACSU PROBABLE AMINO ACID RACEMASE >gi|541393|pir||B36908 aspartate
racemase racX - Bacillus subtilis
>gi|143291|gb|AAA22641.1| (L10629) amino acid racemase
[Bacillus subtilis]
Length = 230
Score = 89.7 bits (219), Expect = 3e-17
Identities = 57/214 (26%), Positives = 113/214 (52%), Gaps = 8/214 (3%)
Query: 4 IGIIGGTTPESTLYYYQKYIEISREKF---EKYVYPELIIYSINFREFFQNPEGWEGRKK 60
IGI+ G P+ST + K I+ ++ + YP ++IYS + P + KK
Sbjct: 5 IGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKK 64
Query: 61 ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL 120
+I+ A LE+ G + IA NT H+ ++++Q+ ++VPM+ I++ +E I K+ ++
Sbjct: 65 AIIDGAVKLEKTGVDFIALPCNTAHVYYEEIQQALSVPMLHIVEETIKE-IPHPAKKAVV 123
Query: 121 LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIERY 180
LGT+ T+ + Y K L+ G E V+ D ++ +N++I +++ + + + Y
Sbjct: 124 LGTEPTIQSAIYQKVLKGNGQE-VIHKDHWQQAVNQLIAAIKQPNHMQHTQALWQTL--Y 180
Query: 181 KE-SENIEGVILGCTELPLAIKQGDVSVEVFDSA 213
+E S++ + +I CT+L + + + DS+
Sbjct: 181 EEISQHADIIISACTDLNAVLDHIQSEIPIIDSS 214
>emb|CAB08017.1| (Z94043) amino acid racemase [Bacillus subtilis]
>gi|2635956|emb|CAB15448.1| (Z99121) amino acid racemase
[Bacillus subtilis]
Length = 227
Score = 89.7 bits (219), Expect = 3e-17
Identities = 57/214 (26%), Positives = 113/214 (52%), Gaps = 8/214 (3%)
Query: 4 IGIIGGTTPESTLYYYQKYIEISREKF---EKYVYPELIIYSINFREFFQNPEGWEGRKK 60
IGI+ G P+ST + K I+ ++ + YP ++IYS + P + KK
Sbjct: 2 IGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKK 61
Query: 61 ILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVLL 120
+I+ A LE+ G + IA NT H+ ++++Q+ ++VPM+ I++ +E I K+ ++
Sbjct: 62 AIIDGAVKLEKTGVDFIALPCNTAHVYYEEIQQALSVPMLHIVEETIKE-IPHPAKKAVV 120
Query: 121 LGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIERY 180
LGT+ T+ + Y K L+ G E V+ D ++ +N++I +++ + + + Y
Sbjct: 121 LGTEPTIQSAIYQKVLKGNGQE-VIHKDHWQQAVNQLIAAIKQPNHMQHTQALWQTL--Y 177
Query: 181 KE-SENIEGVILGCTELPLAIKQGDVSVEVFDSA 213
+E S++ + +I CT+L + + + DS+
Sbjct: 178 EEISQHADIIISACTDLNAVLDHIQSEIPIIDSS 211
>sp|P29079|RACD_STRTR ASPARTATE RACEMASE >gi|79944|pir||S16175 aspartate racemase (EC
5.1.1.13) - Streptococcus thermophilus
>gi|47644|emb|CAA43598.1| (X61301) aspartate racemase
[Streptococcus thermophilus]
Length = 243
Score = 81.5 bits (198), Expect = 8e-15
Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 77 IAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVK-RVLLLGTKTTMSADFYIKA 135
I + NT H F+++Q ++P++ + A E++R+ RV +LGT+ +M A Y +
Sbjct: 80 IVLTCNTAHYFFEELQAATDIPILHMPREAANELVRQHTTGRVAILGTEGSMKAGIYERE 139
Query: 136 LEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIERYKESENIEGVILGCTE 195
++ G E V+P+ +E++N +I+ E+ D N++ +++E E N E VILGCTE
Sbjct: 140 VKNLGFETVIPDTALQEKINYLIYHEIKESDHLNQELYYEILEEAVERLNCEKVILGCTE 199
Query: 196 LPLAIK-QGDVSVEVFDSAEIHMRKLIELASSD 227
L L + D V D+ I + IE A ++
Sbjct: 200 LSLMNEFAEDNHYPVIDAQSILADRTIERALAE 232
>pir||S60208 fomE protein - Streptomyces wedmorensis >gi|1061000|dbj|BAA32489.1|
(AB016934) fomE [Streptomyces wedmorensis]
Length = 233
Score = 68.3 bits (164), Expect = 7e-11
Identities = 58/227 (25%), Positives = 110/227 (47%), Gaps = 6/227 (2%)
Query: 2 KKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYSINFREFFQNPEGWEGRKKI 61
+KIGIIGG P + +Y + +E + ++ +PE+++ S + +G +
Sbjct: 10 QKIGIIGGLGPLACANFYMRLVEQTTAGSDQE-HPEVLLLSSPAIPSRLDHLLSDGPSPV 68
Query: 62 --LINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKRVL 119
L A+ L+ AGA+LIA + T +D+V V+VP+V ++ VA + GV R
Sbjct: 69 EQLQAVARRLQDAGAQLIAMPSVTTQAYYDEVSAAVDVPVVDMLRVVAAGLREAGVLRPA 128
Query: 120 LLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLKNKDWIVKLIER 179
L T + +AL GL V P+ + E+ + E + G ++ ++
Sbjct: 129 LAVTDGALKLGLLHRALVDAGLTPVYPDPATQREIQECV-EMVKSGRVQEASAQLRKAVE 187
Query: 180 YKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASS 226
+ + +GV++GCT+L + ++ V+D I R ++++A+S
Sbjct: 188 GEWTRPGDGVVVGCTDLSPLLP--ELPPHVYDVTRILGRAVLDMAAS 232
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83039741
Number of Sequences: 2977
Number of extensions: 3324537
Number of successful extensions: 10127
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10089
Number of HSP's gapped (non-prelim): 19
length of query: 232
length of database: 189,106,746
effective HSP length: 57
effective length of query: 175
effective length of database: 154,992,987
effective search space: 27123772725
effective search space used: 27123772725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)