BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2074 (PAB2074) DE:Hypothetical protein
         (101 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75157 hypothetical protein PAB2074 - Pyrococcus abyssi (st...   198  1e-50
pir||A71182 hypothetical protein PH1734 - Pyrococcus horikoshii ...   183  4e-46
gb|AAK42859.1| Conserved hypothetical protein [Sulfolobus solfat...    80  4e-15

>pir||A75157 hypothetical protein PAB2074 - Pyrococcus abyssi (strain Orsay)
           >gi|5457846|emb|CAB49336.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 101
           
 Score =  198 bits (499), Expect = 1e-50
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MLAEKPYLLSREKPLSKKEIAQALRWAIEAELDAISFYEQLAELIEDERIRKVFYDVANE 60
           MLAEKPYLLSREKPLSKKEIAQALRWAIEAELDAISFYEQLAELIEDERIRKVFYDVANE
Sbjct: 1   MLAEKPYLLSREKPLSKKEIAQALRWAIEAELDAISFYEQLAELIEDERIRKVFYDVANE 60

Query: 61  EKEHVGEFLAVLLEVDEELVEYIRKGFKEVEEGTGIKAKLK 101
           EKEHVGEFLAVLLEVDEELVEYIRKGFKEVEEGTGIKAKLK
Sbjct: 61  EKEHVGEFLAVLLEVDEELVEYIRKGFKEVEEGTGIKAKLK 101


>pir||A71182 hypothetical protein PH1734 - Pyrococcus horikoshii
           >gi|3258165|dbj|BAA30848.1| (AP000007) 101aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 101
           
 Score =  183 bits (460), Expect = 4e-46
 Identities = 92/101 (91%), Positives = 97/101 (95%)

Query: 1   MLAEKPYLLSREKPLSKKEIAQALRWAIEAELDAISFYEQLAELIEDERIRKVFYDVANE 60
           MLAEKPYL+ REKPLSKKEIAQALRWAIEAELDAI+FYEQLAELIEDE+IR VFYDVANE
Sbjct: 1   MLAEKPYLVEREKPLSKKEIAQALRWAIEAELDAINFYEQLAELIEDEKIRHVFYDVANE 60

Query: 61  EKEHVGEFLAVLLEVDEELVEYIRKGFKEVEEGTGIKAKLK 101
           EKEHVGEFLAVLLEVDEEL E+IRKGFKEVEE TGIKAKL+
Sbjct: 61  EKEHVGEFLAVLLEVDEELAEFIRKGFKEVEEETGIKAKLQ 101


>gb|AAK42859.1| Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 346
          
 Score = 80.4 bits (195), Expect = 4e-15
 Identities = 40/95 (42%), Positives = 60/95 (63%)

Query: 1  MLAEKPYLLSREKPLSKKEIAQALRWAIEAELDAISFYEQLAELIEDERIRKVFYDVANE 60
          M +  P  L+R++   K+E  +A+R AI AE+DAI+FY Q  + I+DE++RKV  D+  E
Sbjct: 1  MFSNDPSTLTRKEKFDKEESVRAIRNAIAAEIDAINFYLQQNKYIDDEKLRKVHEDITKE 60

Query: 61 EKEHVGEFLAVLLEVDEELVEYIRKGFKEVEEGTG 95
          E  H GEFL +L +V  E   Y +KG++E  +  G
Sbjct: 61 EMTHFGEFLRLLYQVSPEDFSYFKKGWEEASKLIG 95


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.136    0.360 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34479818
Number of Sequences: 2977
Number of extensions: 1271494
Number of successful extensions: 3940
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3937
Number of HSP's gapped (non-prelim): 3
length of query: 101
length of database: 189,106,746
effective HSP length: 57
effective length of query: 44
effective length of database: 154,992,987
effective search space: 6819691428
effective search space used: 6819691428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 158 (66.0 bits)