BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB2076 (PAB2076) DE:Resolvase related protein (212 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||B75156 resolvase related protein PAB2076 - Pyrococcus abyss... 420 e-117 gb|AAK42108.1| First ORF in transposon ISC1913 [Sulfolobus solfa... 270 9e-72 sp|Q60329|Y014_METJA HYPOTHETICAL PROTEIN MJ0014 >gi|2128081|pir... 194 5e-49 gb|AAK43255.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 154 6e-37 gb|AAK43270.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 151 5e-36 gb|AAK42026.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 151 7e-36 gb|AAK41954.1| Orf in partial transposon ISC1778 [Sulfolobus sol... 151 7e-36 gb|AAK41585.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 150 9e-36 gb|AAK42155.1| First ORF in transposon ISC1913 [Sulfolobus solfa... 150 9e-36 gb|AAK41430.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 150 1e-35 gb|AAK42123.1| First ORF in partial transposon ISC1913 [Sulfolob... 150 1e-35 gb|AAK41573.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 148 5e-35 gb|AAK43047.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 147 1e-34 emb|CAB58176.1| (X56616) putative resolvase [Acidianus ambivalens] 145 4e-34 gb|AAK41872.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 144 7e-34 gb|AAK41464.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 142 3e-33 gb|AAK41777.1| Orf in partial transposon ISC1778 [Sulfolobus sol... 142 4e-33 gb|AAK42121.1| Second ORF in partial transposon ISC1913 [Sulfolo... 124 9e-28 gb|AAK42157.1| Second ORF in transposon ISC1913 [Sulfolobus solf... 121 8e-27 gb|AAF05600.1|AF189015_1 (AF189015) putative transposase OrfA [H... 119 3e-26 emb|CAC11703.1| (AL445064) hypothetical protein [Thermoplasma ac... 118 7e-26 gb|AAK41335.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 111 8e-24 pir||A70583 probable resolvase for IS1535 - Mycobacterium tuberc... 89 4e-17 pir||G70884 probable IS1602resolvase - Mycobacterium tuberculosi... 85 5e-16 pir||H70909 probable resolvase for IS_Y349 element - Mycobacteri... 83 3e-15 pir||H70672 probable resolvase for IS1538 - Mycobacterium tuberc... 78 6e-14 pir||H70522 probable resolvase within IS1537 element - Mycobacte... 74 1e-12 sp|Q10831|YS86_MYCTU HYPOTHETICAL 31.9 KDA PROTEIN RV2886C >gi|7... 69 3e-11 >pir||B75156 resolvase related protein PAB2076 - Pyrococcus abyssi (strain Orsay) >gi|5457839|emb|CAB49329.1| (AJ248284) Resolvase related protein [Pyrococcus abyssi] Length = 212 Score = 420 bits (1068), Expect = e-117 Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE 60 MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE Sbjct: 1 MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE 60 Query: 61 ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK 120 ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK Sbjct: 61 ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK 120 Query: 121 LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII 180 LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII Sbjct: 121 LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII 180 Query: 181 TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE 212 TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE Sbjct: 181 TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE 212 >gb|AAK42108.1| First ORF in transposon ISC1913 [Sulfolobus solfataricus] Length = 213 Score = 270 bits (683), Expect = 9e-72 Identities = 133/209 (63%), Positives = 166/209 (78%), Gaps = 2/209 (0%) Query: 4 VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63 +ERLL P++ ++LG+S+ T+ RWI GKIR V GK+RIP SE+K+ L ++ EETR Sbjct: 1 MERLLRPKEACQLLGISYSTLLRWIREGKIRVVTTEGGKYRIPYSEIKKYLEKR--EETR 58 Query: 64 AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVS 123 AVIYARVSS+DQR+DLERQ+ YL NY TAKGYK+V+ + DIASGLNT+RKGL KLFKLV Sbjct: 59 AVIYARVSSTDQREDLERQINYLTNYATAKGYKVVEVLKDIASGLNTQRKGLLKLFKLVE 118 Query: 124 ERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSF 183 R VD+VL+TYKDRLTRFG+EY+E FFS V+IE + GEE KD QELVEDLI+IITSF Sbjct: 119 GRSVDIVLITYKDRLTRFGFEYIEEFFSTMGVKIEVVFGEEPKDDAQELVEDLISIITSF 178 Query: 184 AGKLYGLRSHKKKKFVQSFRQLLREVEAE 212 AGK+YG+RSHKK VQ ++L+ E+ E Sbjct: 179 AGKIYGMRSHKKTLLVQGVKKLIGELSGE 207 >sp|Q60329|Y014_METJA HYPOTHETICAL PROTEIN MJ0014 >gi|2128081|pir||F64301 hypothetical protein MJ0014 - Methanococcus jannaschii >gi|1590824|gb|AAB97992.1| (U67460) conserved hypothetical protein [Methanococcus jannaschii] Length = 213 Score = 194 bits (489), Expect = 5e-49 Identities = 98/212 (46%), Positives = 147/212 (69%), Gaps = 2/212 (0%) Query: 1 MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE 60 M I+ER T ++ ++ILGVS T++RW +GKI+ ++ GK R+PESE+KRILG K E Sbjct: 1 MMIMERHYTLKEASKILGVSIKTLQRWDKAGKIKCIRTLGGKRRVPESEIKRILGIKDKE 60 Query: 61 ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK 120 + + + YARVS + Q+ DLERQ++ + +Y G+ + + DI SGLN +RK +KL K Sbjct: 61 QRKIIGYARVSFNAQKDDLERQIQLIKSYAEENGWD-IQILKDIGSGLNEKRKNYKKLLK 119 Query: 121 LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII 180 +V RKV+ V++ Y DRLTRFG+E L+ FF + I I+ ++ K Q+ELVEDLI I+ Sbjct: 120 MVMNRKVEKVIIAYPDRLTRFGFETLKEFFKSYGTEIVIIN-KKHKTPQEELVEDLITIV 178 Query: 181 TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE 212 + FAGKLYG+ SHK KK ++ ++++RE +A+ Sbjct: 179 SHFAGKLYGMHSHKYKKLTKTVKEIVREEDAK 210 >gb|AAK43255.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 192 Score = 154 bits (386), Expect = 6e-37 Identities = 84/199 (42%), Positives = 127/199 (63%), Gaps = 9/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GKWR E +++R++G + + ++ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDIERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSSS Q+ DL QV+YL K Y LV ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSSTQKDDLVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V+V Y DRL RFG+E LE I ++ E+K ++ELVEDL++I+ SF+GK Sbjct: 115 VSRVVVAYPDRLVRFGFEILEETCKAHGCEIVVLNQEDK---EEELVEDLVSILVSFSGK 171 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSHK +K + +L Sbjct: 172 LYGMRSHKYEKVKKCAEEL 190 >gb|AAK43270.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 192 Score = 151 bits (378), Expect = 5e-36 Identities = 82/199 (41%), Positives = 128/199 (64%), Gaps = 9/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GKWR E +V+R++G + + ++ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSSS Q+ +L QV+YL K Y LV ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSSTQKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V+V Y DRL RFG+E LE + I ++ E+K ++ELVEDL++++ SF+GK Sbjct: 115 VSRVVVAYPDRLVRFGFEILEETCKAHNCEIVVLNQEDK---EEELVEDLMSVLVSFSGK 171 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSH+ +K + +L Sbjct: 172 LYGMRSHEYEKVKKCAEEL 190 >gb|AAK42026.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 192 Score = 151 bits (377), Expect = 7e-36 Identities = 84/199 (42%), Positives = 125/199 (62%), Gaps = 9/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GKWR E +V+R++G + + ++ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSSS Q+ DL QV+YL K Y V ITDI S LN +RKG KL +++ + Sbjct: 59 YARVSSSTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSKLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V+V Y DRL RFG+E LE I I+ E+K ++ELVEDL++I+ SF+GK Sbjct: 115 VSRVVVAYPDRLVRFGFEILEEVCKAHGCEIVVINQEDK---EEELVEDLVSILVSFSGK 171 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSHK +K + +L Sbjct: 172 LYGMRSHKYEKVKKCVEEL 190 >gb|AAK41954.1| Orf in partial transposon ISC1778 [Sulfolobus solfataricus] Length = 194 Score = 151 bits (377), Expect = 7e-36 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 7/199 (3%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GKWR E +V++++G + + V+ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVEKLMGIV--KRRKVVL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSSS Q+ DL QV+YL K Y V ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSSTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V++ Y DRL RFG+E LE + I I+ +E K ++ELVEDL++I+ F+GK Sbjct: 115 VSRVVIAYPDRLVRFGFEILEEVCKSHNCEIVVIN-QEDKTPEEELVEDLVSILVLFSGK 173 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSH+ +K + +L Sbjct: 174 LYGMRSHEYEKVKKCVEEL 192 >gb|AAK41585.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 195 Score = 150 bits (376), Expect = 9e-36 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 9/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GKWR E +++R++G + + ++ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDIERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSSS Q+ DL QV+YL K Y V ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSSTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V+V Y DRL RFG+E LE + I ++ E+K ++ELVEDL++ + SF+GK Sbjct: 115 VSRVVVAYPDRLVRFGFEILEEVCKAHNCEIVVLNQEDK---EEELVEDLMSALVSFSGK 171 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSHK +K + +L Sbjct: 172 LYGMRSHKYEKVKKCAEEL 190 >gb|AAK42155.1| First ORF in transposon ISC1913 [Sulfolobus solfataricus] Length = 132 Score = 150 bits (376), Expect = 9e-36 Identities = 74/119 (62%), Positives = 95/119 (79%), Gaps = 2/119 (1%) Query: 4 VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63 +ERLL P++ ++L +S+ T+ RWI GKI+ V GK+RIP SE+K+ L ++ EETR Sbjct: 1 MERLLRPKEACQLLSISYSTLLRWIREGKIKVVTTEGGKYRIPYSEIKKYLEKR--EETR 58 Query: 64 AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLV 122 AVIYARVSS+DQR+DLERQ+ YL NY TAKGYK+V+ + DIASGLNT+RKGL KLFKLV Sbjct: 59 AVIYARVSSADQREDLERQINYLTNYATAKGYKVVEVLKDIASGLNTQRKGLLKLFKLV 117 >gb|AAK41430.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 195 Score = 150 bits (375), Expect = 1e-35 Identities = 82/199 (41%), Positives = 127/199 (63%), Gaps = 9/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GKWR E +V+R++G + + ++ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSS+ Q+ DL QV+YL K Y LV ITDI S LN +RKG KL +++ + Sbjct: 59 YARVSSNTQKDDLVNQVKYLEEQ--VKEYDLV--ITDIGSKLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V+VTY DRL RFG+E LE + I ++ E+K ++ELVEDL++I+ S +GK Sbjct: 115 VSRVVVTYSDRLVRFGFEILEEVCKAHNCEIVVLNQEDK---EEELVEDLVSILVSLSGK 171 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSH+ +K + +L Sbjct: 172 LYGMRSHEYEKVKKCAEEL 190 >gb|AAK42123.1| First ORF in partial transposon ISC1913 [Sulfolobus solfataricus] Length = 145 Score = 150 bits (375), Expect = 1e-35 Identities = 74/119 (62%), Positives = 94/119 (78%), Gaps = 2/119 (1%) Query: 4 VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63 +ERLL P++ ++LG+S+ T+ RWI GKIR V GK+RIP SE+K+ L + EE R Sbjct: 1 MERLLRPKEACQLLGISYSTLLRWIREGKIRVVTTEGGKYRIPYSEIKKYLERR--EEPR 58 Query: 64 AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLV 122 AVIYARVSS+DQ++DLERQ+ YL NY TAKGYK+V+ + DIASGLNT+RKGL KLFKLV Sbjct: 59 AVIYARVSSADQKEDLERQINYLTNYATAKGYKVVEVLKDIASGLNTQRKGLLKLFKLV 117 >gb|AAK41573.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 192 Score = 148 bits (370), Expect = 5e-35 Identities = 82/199 (41%), Positives = 125/199 (62%), Gaps = 9/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L ++ + LG+S+ T++ ++ G I+ V L +GKWR E +V+R++G + + ++ Sbjct: 1 MLRSKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSSS Q+ DL QV+YL K Y V ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSSTQKDDLANQVKYLEEQ--VKEYDQV--ITDIGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V++ Y DRL RFG+E LE I I+ E+K ++ELVEDL++I+ SF+GK Sbjct: 115 VSRVVIAYPDRLVRFGFEILEEVCKAHGCEIVVINQEDK---EEELVEDLVSILLSFSGK 171 Query: 187 LYGLRSHKKKKFVQSFRQL 205 L+G+RSHK +K + +L Sbjct: 172 LHGMRSHKYEKVKKCAEEL 190 >gb|AAK43047.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 194 Score = 147 bits (367), Expect = 1e-34 Identities = 80/199 (40%), Positives = 124/199 (62%), Gaps = 7/199 (3%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GKWR E +++R++G + + ++ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDIERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSS+ Q+ DL QV+YL K Y LV ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSNTQKDDLANQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V+ Y DRL RFG+E LE + I ++ +E K ++ELVEDL I+ SF+GK Sbjct: 115 VSRVITAYPDRLVRFGFEILEEVCKAHNCEIVVLN-QEDKTPEEELVEDLATILVSFSGK 173 Query: 187 LYGLRSHKKKKFVQSFRQL 205 L+G+RS K +K + +L Sbjct: 174 LHGMRSQKYEKVKKCAEEL 192 >emb|CAB58176.1| (X56616) putative resolvase [Acidianus ambivalens] Length = 194 Score = 145 bits (362), Expect = 4e-34 Identities = 76/191 (39%), Positives = 121/191 (62%), Gaps = 7/191 (3%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++V + LG+S+ T++ ++ G I+ V L +GKWR E +V++++G + + ++ Sbjct: 1 MLKPKEVCQRLGISYRTLQSYVKKGYIKPVILQSGKWRFREEDVEKLMGIV--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSS+ Q+ DL Q++YL G ITD+ SGLN +RKG KL +++ + Sbjct: 59 YARVSSNAQKDDLVNQLKYLQEQVKDYG----QVITDVGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V++ Y DRL RFG+E LE + + ++ E+ K +QELVEDLI+I+ SF+GK Sbjct: 115 VSKVVIAYPDRLVRFGFEILEEVCKAHNCELVVLNNED-KTPEQELVEDLISILVSFSGK 173 Query: 187 LYGLRSHKKKK 197 L G+RS K +K Sbjct: 174 LQGMRSQKYEK 184 >gb|AAK41872.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 193 Score = 144 bits (360), Expect = 7e-34 Identities = 81/199 (40%), Positives = 126/199 (62%), Gaps = 8/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++V + LG+S+ T++ ++ G I+ V L +GKWR E +V++++G + + V+ Sbjct: 1 MLRPKEVCQRLGISYPTLREYVKKGYIKPVILQSGKWRFNEEDVEKLMGIV--KRRKVVL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSS Q+ +L QV+YL K Y LV ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSK-QKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 113 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V++ Y DRL RFG+E LE I ++ +E K ++ELVEDL++++ SF+ K Sbjct: 114 VSRVVIAYPDRLVRFGFEILEETCKAHGCEIVVLN-QEDKTPEEELVEDLVSVLVSFSEK 172 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSHK +K + +L Sbjct: 173 LYGMRSHKYEKVKKCAEEL 191 >gb|AAK41464.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 195 Score = 142 bits (355), Expect = 3e-33 Identities = 80/199 (40%), Positives = 125/199 (62%), Gaps = 9/199 (4%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++ + LG+S+ T++ ++ G I+ V L +GK R E +V+R++G + + ++ Sbjct: 1 MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKQRFGEEDVERLMGII--RKRKVIL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSSS Q+ +L QV+YL K Y LV ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSSTQKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V+V Y DRL R G+E LE + I ++ E+K ++ELVEDL++ + SF+GK Sbjct: 115 VSRVVVAYPDRLVRVGFEILEEVCKAHNCEIVVLNQEDK---EEELVEDLMSALVSFSGK 171 Query: 187 LYGLRSHKKKKFVQSFRQL 205 LYG+RSH+ +K + +L Sbjct: 172 LYGMRSHEYEKVKKCAEEL 190 >gb|AAK41777.1| Orf in partial transposon ISC1778 [Sulfolobus solfataricus] Length = 191 Score = 142 bits (354), Expect = 4e-33 Identities = 81/199 (40%), Positives = 126/199 (62%), Gaps = 10/199 (5%) Query: 7 LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66 +L P++V + LG+S+ T++ ++ G I+ V L +GKWR E +V++++G + + V+ Sbjct: 1 MLRPKEVCQRLGISYPTLREYVKKGYIKPVILQSGKWRFNEEDVEKLMGIV--KRRKVVL 58 Query: 67 YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126 YARVSS Q+ +L QV+YL K Y LV ITDI SGLN +RKG KL +++ + Sbjct: 59 YARVSSK-QKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 113 Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186 V V++ Y DRL RFG+E LE I ++ EEK ++ELVEDLI+++ SF+ K Sbjct: 114 VSRVVIAYPDRLVRFGFEILEETCKAHGCEIVVLNQEEK---EEELVEDLISVLVSFSEK 170 Query: 187 LYGLRSHKKKKFVQSFRQL 205 L+G+RSH+ +K + +L Sbjct: 171 LHGMRSHEYEKVKKCAEEL 189 >gb|AAK42121.1| Second ORF in partial transposon ISC1913 [Sulfolobus solfataricus] Length = 98 Score = 124 bits (308), Expect = 9e-28 Identities = 59/88 (67%), Positives = 71/88 (80%) Query: 125 RKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFA 184 R VD++L+TYKDRLTRFG+EYLE FFS VRIE + GEE KDA QELVEDLI+IITSFA Sbjct: 5 RSVDIILITYKDRLTRFGFEYLEEFFSTMGVRIEVVLGEEPKDATQELVEDLISIITSFA 64 Query: 185 GKLYGLRSHKKKKFVQSFRQLLREVEAE 212 GK+YG+RSHKK VQ ++L+ E+ E Sbjct: 65 GKIYGIRSHKKTVLVQGVKKLIGELSGE 92 >gb|AAK42157.1| Second ORF in transposon ISC1913 [Sulfolobus solfataricus] Length = 98 Score = 121 bits (300), Expect = 8e-27 Identities = 57/88 (64%), Positives = 70/88 (78%) Query: 125 RKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFA 184 R VD+VL+TYKDRLTRFG+EY+E FFS V+IE + GEE KD QELVEDLI+IITSFA Sbjct: 5 RSVDIVLITYKDRLTRFGFEYIEEFFSTMGVKIEVVFGEEPKDDAQELVEDLISIITSFA 64 Query: 185 GKLYGLRSHKKKKFVQSFRQLLREVEAE 212 GK+YG+RSHKK VQ ++L+ E+ E Sbjct: 65 GKIYGMRSHKKTLLVQGVKKLIGELSGE 92 >gb|AAF05600.1|AF189015_1 (AF189015) putative transposase OrfA [Helicobacter pylori] Length = 217 Score = 119 bits (295), Expect = 3e-26 Identities = 71/206 (34%), Positives = 118/206 (56%), Gaps = 5/206 (2%) Query: 5 ERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEK---PPEE 61 +R+L+ Q +++LGV+ T++ W ++ +L G R + E R + +E Sbjct: 3 KRMLSIGQASKLLGVTIQTLRNWDKKDLLKPDELTKGGERRYKLESLRRINRSIVFNQDE 62 Query: 62 TRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKL 121 + + YARVSS DQ+ DL RQV+ L YC G+ + I D+ SG+N +KGL KL L Sbjct: 63 LKTIAYARVSSHDQQDDLIRQVQVLELYCARCGFNY-EVIQDLGSGMNYYKKGLTKLLNL 121 Query: 122 VSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIH-GEEKKDAQQELVEDLIAII 180 + + +V +++T+KDRL RFG E + V + I+ G+E ++EL +D++ II Sbjct: 122 ILDNQVKRLVLTHKDRLLRFGAELVFSICEAKGVEVVIINKGDENVRFEEELAKDVLEII 181 Query: 181 TSFAGKLYGLRSHKKKKFVQSFRQLL 206 T F+ +LYG RS K KK + ++++ Sbjct: 182 TVFSARLYGSRSKKNKKLLDEMQEVI 207 >emb|CAC11703.1| (AL445064) hypothetical protein [Thermoplasma acidophilum] Length = 183 Score = 118 bits (292), Expect = 7e-26 Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 7/172 (4%) Query: 4 VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63 + ++ T R+ +IL + T++RW GKI ++L R+PE E+ RILG K Sbjct: 1 MSKVYTIREACDILQIDATTLRRWDREGKIHCIRLSNNFRRVPEEEINRILGIK--NNRI 58 Query: 64 AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVS 123 IYARVSS+DQ+ DL Q+ L + YK +DI SGL RKG +L KL+ Sbjct: 59 DAIYARVSSNDQKNDLHNQINRLKSL-----YKDAQVFSDIKSGLKFNRKGFLELLKLIE 113 Query: 124 ERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVED 175 K++ + +T+KDRL RFG++ +E + +I + GEE A +EL +D Sbjct: 114 GNKINNIYITHKDRLARFGFDLIEEVCKIHNTKIIEVDGEEVSSANEELTKD 165 >gb|AAK41335.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus] Length = 146 Score = 111 bits (274), Expect = 8e-24 Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 6/143 (4%) Query: 63 RAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLV 122 + ++YARVSS+ Q+ DL QV+YL K Y V ITDI S LN +RKG KL +++ Sbjct: 8 KVILYARVSSNTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSKLNMKRKGFLKLLRMI 63 Query: 123 SERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITS 182 +V V+V Y D+L RFG+E LE + I I+ E+K +ELVEDL++ + S Sbjct: 64 LNNEVSRVVVAYPDKLVRFGFEILEETYKAHGCEIVVINQEDK--TPEELVEDLVSTLVS 121 Query: 183 FAGKLYGLRSHKKKKFVQSFRQL 205 F+GKLYG+RSHK +K + +L Sbjct: 122 FSGKLYGMRSHKYEKVKKCAEEL 144 >pir||A70583 probable resolvase for IS1535 - Mycobacterium tuberculosis (strain H37RV) >gi|2078070|emb|CAB08503.1| (Z95210) hypothetical protein Rv0921 [Mycobacterium tuberculosis] Length = 193 Score = 88.9 bits (217), Expect = 4e-17 Identities = 62/188 (32%), Positives = 94/188 (49%), Gaps = 21/188 (11%) Query: 14 AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRA-----VIYA 68 AE +GV+ T RW G + +P V R++ K A V+YA Sbjct: 7 AESVGVNRHTAYRWFREGTLP----------VPAERVGRLILVKTAASASAAAAGVVLYA 56 Query: 69 RVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVD 128 RVSS D+R DL+RQV L + T + + + ++ SGLN +R KL +++S+ Sbjct: 57 RVSSHDRRSDLDRQVARLTAWATERDLGVGQVVCEVGSGLNGKR---PKLRRILSDPDAR 113 Query: 129 VVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLY 188 V++V ++DRL RFG E+LE S RI E D +LV D+I ++T +LY Sbjct: 114 VIVVEHRDRLARFGVEHLEAALSAQGRRIVVADPGETTD---DLVCDMIEVLTGMCARLY 170 Query: 189 GLRSHKKK 196 G R + + Sbjct: 171 GRRGARNR 178 >pir||G70884 probable IS1602resolvase - Mycobacterium tuberculosis (strain H37RV) >gi|2624314|emb|CAA15587.1| (AL008967) hypothetical protein Rv2792c [Mycobacterium tuberculosis] Length = 193 Score = 85.4 bits (208), Expect = 5e-16 Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 21/188 (11%) Query: 14 AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRIL--GEKPPEETR---AVIYA 68 AE GV+ +T RW ++G + +P + R++ ++P + +R +YA Sbjct: 7 AERNGVARVTAYRWFHAGLLP----------VPARKAGRLILVDDQPADRSRRARTAVYA 56 Query: 69 RVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVD 128 RVSS+DQ+ DL+RQV + + T + + +T++ S LN R+ K L+ + V Sbjct: 57 RVSSADQKPDLDRQVARVTAWATTEQIAVDKVVTEVGSALNGHRR---KFLALLRDPSVK 113 Query: 129 VVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLY 188 ++V ++DR RFG EY+E + + + E D +LV D+ I+TS +LY Sbjct: 114 RIVVEHRDRFCRFGSEYVEAALAAQGRELVVVDSAEVDD---DLVRDMTEILTSMCARLY 170 Query: 189 GLRSHKKK 196 G R+ + + Sbjct: 171 GKRAAQNR 178 >pir||H70909 probable resolvase for IS_Y349 element - Mycobacterium tuberculosis (strain H37RV) >gi|2222753|emb|CAB09977.1| (Z97182) hypothetical protein Rv0605 [Mycobacterium tuberculosis] Length = 202 Score = 82.7 bits (201), Expect = 3e-15 Identities = 52/183 (28%), Positives = 94/183 (50%), Gaps = 11/183 (6%) Query: 14 AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVIYARVSSS 73 AE GV+ +T RW ++G + G+ + + L + + + +YARVSS+ Sbjct: 15 AERNGVARVTAYRWFHAGLLPVPARKVGRLILVDE-----LASEAGAQPKTAVYARVSSA 69 Query: 74 DQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVDVVLVT 133 DQ+ DL+RQV + ++ TA+ + +T++ S LN R+ K ++ + V ++V Sbjct: 70 DQKSDLDRQVARVTSWATAEQIPVDKVVTEVGSVLNGHRR---KFPAVLRDLSVTRIVVE 126 Query: 134 YKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLYGLRSH 193 ++DR RFG EY+ + + + E D +LV D+ I+TS +LYG R+ Sbjct: 127 HRDRFCRFGSEYVHAALAAQGRELVVVDSAEVDD---DLVWDMTEILTSMCARLYGKRAA 183 Query: 194 KKK 196 + + Sbjct: 184 QNR 186 >pir||H70672 probable resolvase for IS1538 - Mycobacterium tuberculosis (strain H37RV) >gi|1694852|emb|CAB05433.1| (Z83018) hypothetical protein Rv2979c [Mycobacterium tuberculosis] Length = 194 Score = 78.4 bits (190), Expect = 6e-14 Identities = 53/183 (28%), Positives = 92/183 (49%), Gaps = 11/183 (6%) Query: 14 AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVIYARVSSS 73 AE GV+ T RW +G + + G+ + + E G + P +YARVSS+ Sbjct: 7 AERNGVAPGTAYRWFRAGLLSVMARRVGRLILVD-EPAGDAGMRSP----TAVYARVSSA 61 Query: 74 DQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVDVVLVT 133 DQ+ DL+RQV + + TA+ + +T++ S N R+ K L+ + V ++V Sbjct: 62 DQKADLDRQVARVTAWATAQQMPVDKVVTEVGSAFNEHRR---KFLSLLRDPSVHRIVVE 118 Query: 134 YKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLYGLRSH 193 ++DR R G +Y++ F+ + + E D +LV D+ I+TS +LYG R+ Sbjct: 119 HRDRFCRLGSKYVQAAFAAQGRELVVVDSAEVDD---DLVRDMTEILTSMCARLYGKRAA 175 Query: 194 KKK 196 + + Sbjct: 176 ENR 178 >pir||H70522 probable resolvase within IS1537 element - Mycobacterium tuberculosis (strain H37RV) >gi|2224817|emb|CAB10010.1| (Z97188) hypothetical protein Rv3828c [Mycobacterium tuberculosis] Length = 203 Score = 74.1 bits (179), Expect = 1e-12 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 21/197 (10%) Query: 1 MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPP- 59 +C R + AE GV+++ RW RA LP +P V R++ P Sbjct: 4 VCCRNRWMNLAVWAERNGVAWVIAYRWF-----RAGLLP-----VPAQRVGRLILVNDPA 53 Query: 60 -EET---RAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGL 115 EE+ R ++YARVSS+DQR DL+R+V + + T++ + + + LN R+ Sbjct: 54 VEESGRGRTLVYARVSSADQRSDLDRRVARVTAWATSQHLSVDKVVAEGGWALNGHRR-- 111 Query: 116 QKLFKLVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVED 175 K F L+ + V ++V ++DR FG EY+E + + E D +LV D Sbjct: 112 -KFFALLGDPVVTRIVVEHRDRFCWFGSEYVEAALVAQGRELVVVDLAEVDD---DLVGD 167 Query: 176 LIAIITSFAGKLYGLRS 192 + I+TS +LYG R+ Sbjct: 168 MTEILTSMCARLYGERA 184 >sp|Q10831|YS86_MYCTU HYPOTHETICAL 31.9 KDA PROTEIN RV2886C >gi|7477415|pir||A70925 hypothetical protein Rv2886c - Mycobacterium tuberculosis (strain H37RV) >gi|1403406|emb|CAA98362.1| (Z74024) hypothetical protein Rv2886c [Mycobacterium tuberculosis] Length = 295 Score = 69.5 bits (167), Expect = 3e-11 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 21/184 (11%) Query: 14 AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRIL-----GEKPPEETRAVIYA 68 AE GV+ + RW+ G++ +P V R++ +P R + A Sbjct: 107 AEGNGVARVIAYRWLRVGRLP----------VPARRVGRVILVDEPAGQPGRWGRTAVCA 156 Query: 69 RVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVD 128 R+SS+DQ+ DL+RQV + + TA+ + +T++ S L RR+ L+ + V Sbjct: 157 RLSSADQKVDLDRQVVGVTAWATAEQIPVGKVVTEVGSALYGRRR---TFLTLLGDPTVR 213 Query: 129 VVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLY 188 +++ +DRL RFG+E ++ + + + + D ++V D+ I+TS +LY Sbjct: 214 RIVMKRRDRLGRFGFECVQAVLAADGRELVVV---DSADVDDDVVGDITEILTSICARLY 270 Query: 189 GLRS 192 G R+ Sbjct: 271 GKRA 274 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.321 0.139 0.388 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72723335 Number of Sequences: 2977 Number of extensions: 2859052 Number of successful extensions: 8396 Number of sequences better than 1.0e-10: 28 Number of HSP's better than 0.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 8328 Number of HSP's gapped (non-prelim): 29 length of query: 212 length of database: 189,106,746 effective HSP length: 56 effective length of query: 156 effective length of database: 155,591,474 effective search space: 24272269944 effective search space used: 24272269944 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.8 bits) S2: 163 (67.9 bits)