BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2076 (PAB2076) DE:Resolvase related protein
         (212 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75156 resolvase related protein PAB2076 - Pyrococcus abyss...   420  e-117
gb|AAK42108.1| First ORF in transposon ISC1913 [Sulfolobus solfa...   270  9e-72
sp|Q60329|Y014_METJA HYPOTHETICAL PROTEIN MJ0014 >gi|2128081|pir...   194  5e-49
gb|AAK43255.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   154  6e-37
gb|AAK43270.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   151  5e-36
gb|AAK42026.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   151  7e-36
gb|AAK41954.1| Orf in partial transposon ISC1778 [Sulfolobus sol...   151  7e-36
gb|AAK41585.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   150  9e-36
gb|AAK42155.1| First ORF in transposon ISC1913 [Sulfolobus solfa...   150  9e-36
gb|AAK41430.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   150  1e-35
gb|AAK42123.1| First ORF in partial transposon ISC1913 [Sulfolob...   150  1e-35
gb|AAK41573.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   148  5e-35
gb|AAK43047.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   147  1e-34
emb|CAB58176.1| (X56616) putative resolvase [Acidianus ambivalens]    145  4e-34
gb|AAK41872.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   144  7e-34
gb|AAK41464.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   142  3e-33
gb|AAK41777.1| Orf in partial transposon ISC1778 [Sulfolobus sol...   142  4e-33
gb|AAK42121.1| Second ORF in partial transposon ISC1913 [Sulfolo...   124  9e-28
gb|AAK42157.1| Second ORF in transposon ISC1913 [Sulfolobus solf...   121  8e-27
gb|AAF05600.1|AF189015_1 (AF189015) putative transposase OrfA [H...   119  3e-26
emb|CAC11703.1| (AL445064) hypothetical protein [Thermoplasma ac...   118  7e-26
gb|AAK41335.1| First ORF in transposon ISC1778 [Sulfolobus solfa...   111  8e-24
pir||A70583 probable resolvase for IS1535 - Mycobacterium tuberc...    89  4e-17
pir||G70884 probable IS1602resolvase - Mycobacterium tuberculosi...    85  5e-16
pir||H70909 probable resolvase for IS_Y349 element - Mycobacteri...    83  3e-15
pir||H70672 probable resolvase for IS1538 - Mycobacterium tuberc...    78  6e-14
pir||H70522 probable resolvase within IS1537 element - Mycobacte...    74  1e-12
sp|Q10831|YS86_MYCTU HYPOTHETICAL 31.9 KDA PROTEIN RV2886C >gi|7...    69  3e-11

>pir||B75156 resolvase related protein PAB2076 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457839|emb|CAB49329.1| (AJ248284) Resolvase
           related protein [Pyrococcus abyssi]
           Length = 212
           
 Score =  420 bits (1068), Expect = e-117
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE 60
           MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE
Sbjct: 1   MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE 60

Query: 61  ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK 120
           ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK
Sbjct: 61  ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK 120

Query: 121 LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII 180
           LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII
Sbjct: 121 LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII 180

Query: 181 TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE 212
           TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE
Sbjct: 181 TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE 212


>gb|AAK42108.1| First ORF in transposon ISC1913 [Sulfolobus solfataricus]
           Length = 213
           
 Score =  270 bits (683), Expect = 9e-72
 Identities = 133/209 (63%), Positives = 166/209 (78%), Gaps = 2/209 (0%)

Query: 4   VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63
           +ERLL P++  ++LG+S+ T+ RWI  GKIR V    GK+RIP SE+K+ L ++  EETR
Sbjct: 1   MERLLRPKEACQLLGISYSTLLRWIREGKIRVVTTEGGKYRIPYSEIKKYLEKR--EETR 58

Query: 64  AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVS 123
           AVIYARVSS+DQR+DLERQ+ YL NY TAKGYK+V+ + DIASGLNT+RKGL KLFKLV 
Sbjct: 59  AVIYARVSSTDQREDLERQINYLTNYATAKGYKVVEVLKDIASGLNTQRKGLLKLFKLVE 118

Query: 124 ERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSF 183
            R VD+VL+TYKDRLTRFG+EY+E FFS   V+IE + GEE KD  QELVEDLI+IITSF
Sbjct: 119 GRSVDIVLITYKDRLTRFGFEYIEEFFSTMGVKIEVVFGEEPKDDAQELVEDLISIITSF 178

Query: 184 AGKLYGLRSHKKKKFVQSFRQLLREVEAE 212
           AGK+YG+RSHKK   VQ  ++L+ E+  E
Sbjct: 179 AGKIYGMRSHKKTLLVQGVKKLIGELSGE 207


>sp|Q60329|Y014_METJA HYPOTHETICAL PROTEIN MJ0014 >gi|2128081|pir||F64301 hypothetical
           protein MJ0014 - Methanococcus jannaschii
           >gi|1590824|gb|AAB97992.1| (U67460) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 213
           
 Score =  194 bits (489), Expect = 5e-49
 Identities = 98/212 (46%), Positives = 147/212 (69%), Gaps = 2/212 (0%)

Query: 1   MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPE 60
           M I+ER  T ++ ++ILGVS  T++RW  +GKI+ ++   GK R+PESE+KRILG K  E
Sbjct: 1   MMIMERHYTLKEASKILGVSIKTLQRWDKAGKIKCIRTLGGKRRVPESEIKRILGIKDKE 60

Query: 61  ETRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFK 120
           + + + YARVS + Q+ DLERQ++ + +Y    G+  +  + DI SGLN +RK  +KL K
Sbjct: 61  QRKIIGYARVSFNAQKDDLERQIQLIKSYAEENGWD-IQILKDIGSGLNEKRKNYKKLLK 119

Query: 121 LVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAII 180
           +V  RKV+ V++ Y DRLTRFG+E L+ FF  +   I  I+ ++ K  Q+ELVEDLI I+
Sbjct: 120 MVMNRKVEKVIIAYPDRLTRFGFETLKEFFKSYGTEIVIIN-KKHKTPQEELVEDLITIV 178

Query: 181 TSFAGKLYGLRSHKKKKFVQSFRQLLREVEAE 212
           + FAGKLYG+ SHK KK  ++ ++++RE +A+
Sbjct: 179 SHFAGKLYGMHSHKYKKLTKTVKEIVREEDAK 210


>gb|AAK43255.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 192
           
 Score =  154 bits (386), Expect = 6e-37
 Identities = 84/199 (42%), Positives = 127/199 (63%), Gaps = 9/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GKWR  E +++R++G     + + ++
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDIERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSSS Q+ DL  QV+YL      K Y LV  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSSTQKDDLVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V+V Y DRL RFG+E LE         I  ++ E+K   ++ELVEDL++I+ SF+GK
Sbjct: 115 VSRVVVAYPDRLVRFGFEILEETCKAHGCEIVVLNQEDK---EEELVEDLVSILVSFSGK 171

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSHK +K  +   +L
Sbjct: 172 LYGMRSHKYEKVKKCAEEL 190


>gb|AAK43270.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 192
           
 Score =  151 bits (378), Expect = 5e-36
 Identities = 82/199 (41%), Positives = 128/199 (64%), Gaps = 9/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GKWR  E +V+R++G     + + ++
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSSS Q+ +L  QV+YL      K Y LV  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSSTQKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V+V Y DRL RFG+E LE      +  I  ++ E+K   ++ELVEDL++++ SF+GK
Sbjct: 115 VSRVVVAYPDRLVRFGFEILEETCKAHNCEIVVLNQEDK---EEELVEDLMSVLVSFSGK 171

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSH+ +K  +   +L
Sbjct: 172 LYGMRSHEYEKVKKCAEEL 190


>gb|AAK42026.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 192
           
 Score =  151 bits (377), Expect = 7e-36
 Identities = 84/199 (42%), Positives = 125/199 (62%), Gaps = 9/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GKWR  E +V+R++G     + + ++
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSSS Q+ DL  QV+YL      K Y  V  ITDI S LN +RKG  KL +++   +
Sbjct: 59  YARVSSSTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSKLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V+V Y DRL RFG+E LE         I  I+ E+K   ++ELVEDL++I+ SF+GK
Sbjct: 115 VSRVVVAYPDRLVRFGFEILEEVCKAHGCEIVVINQEDK---EEELVEDLVSILVSFSGK 171

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSHK +K  +   +L
Sbjct: 172 LYGMRSHKYEKVKKCVEEL 190


>gb|AAK41954.1| Orf in partial transposon ISC1778 [Sulfolobus solfataricus]
           Length = 194
           
 Score =  151 bits (377), Expect = 7e-36
 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 7/199 (3%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GKWR  E +V++++G    +  + V+
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVEKLMGIV--KRRKVVL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSSS Q+ DL  QV+YL      K Y  V  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSSTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V++ Y DRL RFG+E LE      +  I  I+ +E K  ++ELVEDL++I+  F+GK
Sbjct: 115 VSRVVIAYPDRLVRFGFEILEEVCKSHNCEIVVIN-QEDKTPEEELVEDLVSILVLFSGK 173

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSH+ +K  +   +L
Sbjct: 174 LYGMRSHEYEKVKKCVEEL 192


>gb|AAK41585.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 195
           
 Score =  150 bits (376), Expect = 9e-36
 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 9/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GKWR  E +++R++G     + + ++
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDIERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSSS Q+ DL  QV+YL      K Y  V  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSSTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V+V Y DRL RFG+E LE      +  I  ++ E+K   ++ELVEDL++ + SF+GK
Sbjct: 115 VSRVVVAYPDRLVRFGFEILEEVCKAHNCEIVVLNQEDK---EEELVEDLMSALVSFSGK 171

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSHK +K  +   +L
Sbjct: 172 LYGMRSHKYEKVKKCAEEL 190


>gb|AAK42155.1| First ORF in transposon ISC1913 [Sulfolobus solfataricus]
           Length = 132
           
 Score =  150 bits (376), Expect = 9e-36
 Identities = 74/119 (62%), Positives = 95/119 (79%), Gaps = 2/119 (1%)

Query: 4   VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63
           +ERLL P++  ++L +S+ T+ RWI  GKI+ V    GK+RIP SE+K+ L ++  EETR
Sbjct: 1   MERLLRPKEACQLLSISYSTLLRWIREGKIKVVTTEGGKYRIPYSEIKKYLEKR--EETR 58

Query: 64  AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLV 122
           AVIYARVSS+DQR+DLERQ+ YL NY TAKGYK+V+ + DIASGLNT+RKGL KLFKLV
Sbjct: 59  AVIYARVSSADQREDLERQINYLTNYATAKGYKVVEVLKDIASGLNTQRKGLLKLFKLV 117


>gb|AAK41430.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 195
           
 Score =  150 bits (375), Expect = 1e-35
 Identities = 82/199 (41%), Positives = 127/199 (63%), Gaps = 9/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GKWR  E +V+R++G     + + ++
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSS+ Q+ DL  QV+YL      K Y LV  ITDI S LN +RKG  KL +++   +
Sbjct: 59  YARVSSNTQKDDLVNQVKYLEEQ--VKEYDLV--ITDIGSKLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V+VTY DRL RFG+E LE      +  I  ++ E+K   ++ELVEDL++I+ S +GK
Sbjct: 115 VSRVVVTYSDRLVRFGFEILEEVCKAHNCEIVVLNQEDK---EEELVEDLVSILVSLSGK 171

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSH+ +K  +   +L
Sbjct: 172 LYGMRSHEYEKVKKCAEEL 190


>gb|AAK42123.1| First ORF in partial transposon ISC1913 [Sulfolobus solfataricus]
           Length = 145
           
 Score =  150 bits (375), Expect = 1e-35
 Identities = 74/119 (62%), Positives = 94/119 (78%), Gaps = 2/119 (1%)

Query: 4   VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63
           +ERLL P++  ++LG+S+ T+ RWI  GKIR V    GK+RIP SE+K+ L  +  EE R
Sbjct: 1   MERLLRPKEACQLLGISYSTLLRWIREGKIRVVTTEGGKYRIPYSEIKKYLERR--EEPR 58

Query: 64  AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLV 122
           AVIYARVSS+DQ++DLERQ+ YL NY TAKGYK+V+ + DIASGLNT+RKGL KLFKLV
Sbjct: 59  AVIYARVSSADQKEDLERQINYLTNYATAKGYKVVEVLKDIASGLNTQRKGLLKLFKLV 117


>gb|AAK41573.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 192
           
 Score =  148 bits (370), Expect = 5e-35
 Identities = 82/199 (41%), Positives = 125/199 (62%), Gaps = 9/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L  ++  + LG+S+ T++ ++  G I+ V L +GKWR  E +V+R++G     + + ++
Sbjct: 1   MLRSKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSSS Q+ DL  QV+YL      K Y  V  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSSTQKDDLANQVKYLEEQ--VKEYDQV--ITDIGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V++ Y DRL RFG+E LE         I  I+ E+K   ++ELVEDL++I+ SF+GK
Sbjct: 115 VSRVVIAYPDRLVRFGFEILEEVCKAHGCEIVVINQEDK---EEELVEDLVSILLSFSGK 171

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           L+G+RSHK +K  +   +L
Sbjct: 172 LHGMRSHKYEKVKKCAEEL 190


>gb|AAK43047.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 194
           
 Score =  147 bits (367), Expect = 1e-34
 Identities = 80/199 (40%), Positives = 124/199 (62%), Gaps = 7/199 (3%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GKWR  E +++R++G     + + ++
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDIERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSS+ Q+ DL  QV+YL      K Y LV  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSNTQKDDLANQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V+  Y DRL RFG+E LE      +  I  ++ +E K  ++ELVEDL  I+ SF+GK
Sbjct: 115 VSRVITAYPDRLVRFGFEILEEVCKAHNCEIVVLN-QEDKTPEEELVEDLATILVSFSGK 173

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           L+G+RS K +K  +   +L
Sbjct: 174 LHGMRSQKYEKVKKCAEEL 192


>emb|CAB58176.1| (X56616) putative resolvase [Acidianus ambivalens]
           Length = 194
           
 Score =  145 bits (362), Expect = 4e-34
 Identities = 76/191 (39%), Positives = 121/191 (62%), Gaps = 7/191 (3%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++V + LG+S+ T++ ++  G I+ V L +GKWR  E +V++++G     + + ++
Sbjct: 1   MLKPKEVCQRLGISYRTLQSYVKKGYIKPVILQSGKWRFREEDVEKLMGIV--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSS+ Q+ DL  Q++YL       G      ITD+ SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSNAQKDDLVNQLKYLQEQVKDYG----QVITDVGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V++ Y DRL RFG+E LE      +  +  ++ E+ K  +QELVEDLI+I+ SF+GK
Sbjct: 115 VSKVVIAYPDRLVRFGFEILEEVCKAHNCELVVLNNED-KTPEQELVEDLISILVSFSGK 173

Query: 187 LYGLRSHKKKK 197
           L G+RS K +K
Sbjct: 174 LQGMRSQKYEK 184


>gb|AAK41872.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 193
           
 Score =  144 bits (360), Expect = 7e-34
 Identities = 81/199 (40%), Positives = 126/199 (62%), Gaps = 8/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++V + LG+S+ T++ ++  G I+ V L +GKWR  E +V++++G    +  + V+
Sbjct: 1   MLRPKEVCQRLGISYPTLREYVKKGYIKPVILQSGKWRFNEEDVEKLMGIV--KRRKVVL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSS  Q+ +L  QV+YL      K Y LV  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSK-QKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 113

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V++ Y DRL RFG+E LE         I  ++ +E K  ++ELVEDL++++ SF+ K
Sbjct: 114 VSRVVIAYPDRLVRFGFEILEETCKAHGCEIVVLN-QEDKTPEEELVEDLVSVLVSFSEK 172

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSHK +K  +   +L
Sbjct: 173 LYGMRSHKYEKVKKCAEEL 191


>gb|AAK41464.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 195
           
 Score =  142 bits (355), Expect = 3e-33
 Identities = 80/199 (40%), Positives = 125/199 (62%), Gaps = 9/199 (4%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++  + LG+S+ T++ ++  G I+ V L +GK R  E +V+R++G     + + ++
Sbjct: 1   MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKQRFGEEDVERLMGII--RKRKVIL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSSS Q+ +L  QV+YL      K Y LV  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSSTQKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 114

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V+V Y DRL R G+E LE      +  I  ++ E+K   ++ELVEDL++ + SF+GK
Sbjct: 115 VSRVVVAYPDRLVRVGFEILEEVCKAHNCEIVVLNQEDK---EEELVEDLMSALVSFSGK 171

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           LYG+RSH+ +K  +   +L
Sbjct: 172 LYGMRSHEYEKVKKCAEEL 190


>gb|AAK41777.1| Orf in partial transposon ISC1778 [Sulfolobus solfataricus]
           Length = 191
           
 Score =  142 bits (354), Expect = 4e-33
 Identities = 81/199 (40%), Positives = 126/199 (62%), Gaps = 10/199 (5%)

Query: 7   LLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVI 66
           +L P++V + LG+S+ T++ ++  G I+ V L +GKWR  E +V++++G    +  + V+
Sbjct: 1   MLRPKEVCQRLGISYPTLREYVKKGYIKPVILQSGKWRFNEEDVEKLMGIV--KRRKVVL 58

Query: 67  YARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERK 126
           YARVSS  Q+ +L  QV+YL      K Y LV  ITDI SGLN +RKG  KL +++   +
Sbjct: 59  YARVSSK-QKDELVNQVKYLEEQ--VKEYDLV--ITDIGSGLNMKRKGFLKLLRMILNNE 113

Query: 127 VDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGK 186
           V  V++ Y DRL RFG+E LE         I  ++ EEK   ++ELVEDLI+++ SF+ K
Sbjct: 114 VSRVVIAYPDRLVRFGFEILEETCKAHGCEIVVLNQEEK---EEELVEDLISVLVSFSEK 170

Query: 187 LYGLRSHKKKKFVQSFRQL 205
           L+G+RSH+ +K  +   +L
Sbjct: 171 LHGMRSHEYEKVKKCAEEL 189


>gb|AAK42121.1| Second ORF in partial transposon ISC1913 [Sulfolobus solfataricus]
           Length = 98
           
 Score =  124 bits (308), Expect = 9e-28
 Identities = 59/88 (67%), Positives = 71/88 (80%)

Query: 125 RKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFA 184
           R VD++L+TYKDRLTRFG+EYLE FFS   VRIE + GEE KDA QELVEDLI+IITSFA
Sbjct: 5   RSVDIILITYKDRLTRFGFEYLEEFFSTMGVRIEVVLGEEPKDATQELVEDLISIITSFA 64

Query: 185 GKLYGLRSHKKKKFVQSFRQLLREVEAE 212
           GK+YG+RSHKK   VQ  ++L+ E+  E
Sbjct: 65  GKIYGIRSHKKTVLVQGVKKLIGELSGE 92


>gb|AAK42157.1| Second ORF in transposon ISC1913 [Sulfolobus solfataricus]
           Length = 98
           
 Score =  121 bits (300), Expect = 8e-27
 Identities = 57/88 (64%), Positives = 70/88 (78%)

Query: 125 RKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFA 184
           R VD+VL+TYKDRLTRFG+EY+E FFS   V+IE + GEE KD  QELVEDLI+IITSFA
Sbjct: 5   RSVDIVLITYKDRLTRFGFEYIEEFFSTMGVKIEVVFGEEPKDDAQELVEDLISIITSFA 64

Query: 185 GKLYGLRSHKKKKFVQSFRQLLREVEAE 212
           GK+YG+RSHKK   VQ  ++L+ E+  E
Sbjct: 65  GKIYGMRSHKKTLLVQGVKKLIGELSGE 92


>gb|AAF05600.1|AF189015_1 (AF189015) putative transposase OrfA [Helicobacter pylori]
           Length = 217
           
 Score =  119 bits (295), Expect = 3e-26
 Identities = 71/206 (34%), Positives = 118/206 (56%), Gaps = 5/206 (2%)

Query: 5   ERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEK---PPEE 61
           +R+L+  Q +++LGV+  T++ W     ++  +L  G  R  + E  R +        +E
Sbjct: 3   KRMLSIGQASKLLGVTIQTLRNWDKKDLLKPDELTKGGERRYKLESLRRINRSIVFNQDE 62

Query: 62  TRAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKL 121
            + + YARVSS DQ+ DL RQV+ L  YC   G+   + I D+ SG+N  +KGL KL  L
Sbjct: 63  LKTIAYARVSSHDQQDDLIRQVQVLELYCARCGFNY-EVIQDLGSGMNYYKKGLTKLLNL 121

Query: 122 VSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIH-GEEKKDAQQELVEDLIAII 180
           + + +V  +++T+KDRL RFG E +        V +  I+ G+E    ++EL +D++ II
Sbjct: 122 ILDNQVKRLVLTHKDRLLRFGAELVFSICEAKGVEVVIINKGDENVRFEEELAKDVLEII 181

Query: 181 TSFAGKLYGLRSHKKKKFVQSFRQLL 206
           T F+ +LYG RS K KK +   ++++
Sbjct: 182 TVFSARLYGSRSKKNKKLLDEMQEVI 207


>emb|CAC11703.1| (AL445064) hypothetical protein [Thermoplasma acidophilum]
           Length = 183
           
 Score =  118 bits (292), Expect = 7e-26
 Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 7/172 (4%)

Query: 4   VERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETR 63
           + ++ T R+  +IL +   T++RW   GKI  ++L     R+PE E+ RILG K      
Sbjct: 1   MSKVYTIREACDILQIDATTLRRWDREGKIHCIRLSNNFRRVPEEEINRILGIK--NNRI 58

Query: 64  AVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVS 123
             IYARVSS+DQ+ DL  Q+  L +      YK     +DI SGL   RKG  +L KL+ 
Sbjct: 59  DAIYARVSSNDQKNDLHNQINRLKSL-----YKDAQVFSDIKSGLKFNRKGFLELLKLIE 113

Query: 124 ERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVED 175
             K++ + +T+KDRL RFG++ +E      + +I  + GEE   A +EL +D
Sbjct: 114 GNKINNIYITHKDRLARFGFDLIEEVCKIHNTKIIEVDGEEVSSANEELTKD 165


>gb|AAK41335.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
           Length = 146
           
 Score =  111 bits (274), Expect = 8e-24
 Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 6/143 (4%)

Query: 63  RAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLV 122
           + ++YARVSS+ Q+ DL  QV+YL      K Y  V  ITDI S LN +RKG  KL +++
Sbjct: 8   KVILYARVSSNTQKDDLVNQVKYLEEQ--VKEYDQV--ITDIGSKLNMKRKGFLKLLRMI 63

Query: 123 SERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITS 182
              +V  V+V Y D+L RFG+E LE  +      I  I+ E+K    +ELVEDL++ + S
Sbjct: 64  LNNEVSRVVVAYPDKLVRFGFEILEETYKAHGCEIVVINQEDK--TPEELVEDLVSTLVS 121

Query: 183 FAGKLYGLRSHKKKKFVQSFRQL 205
           F+GKLYG+RSHK +K  +   +L
Sbjct: 122 FSGKLYGMRSHKYEKVKKCAEEL 144


>pir||A70583 probable resolvase for IS1535 - Mycobacterium tuberculosis  (strain
           H37RV) >gi|2078070|emb|CAB08503.1| (Z95210) hypothetical
           protein Rv0921 [Mycobacterium tuberculosis]
           Length = 193
           
 Score = 88.9 bits (217), Expect = 4e-17
 Identities = 62/188 (32%), Positives = 94/188 (49%), Gaps = 21/188 (11%)

Query: 14  AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRA-----VIYA 68
           AE +GV+  T  RW   G +           +P   V R++  K      A     V+YA
Sbjct: 7   AESVGVNRHTAYRWFREGTLP----------VPAERVGRLILVKTAASASAAAAGVVLYA 56

Query: 69  RVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVD 128
           RVSS D+R DL+RQV  L  + T +   +   + ++ SGLN +R    KL +++S+    
Sbjct: 57  RVSSHDRRSDLDRQVARLTAWATERDLGVGQVVCEVGSGLNGKR---PKLRRILSDPDAR 113

Query: 129 VVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLY 188
           V++V ++DRL RFG E+LE   S    RI      E  D   +LV D+I ++T    +LY
Sbjct: 114 VIVVEHRDRLARFGVEHLEAALSAQGRRIVVADPGETTD---DLVCDMIEVLTGMCARLY 170

Query: 189 GLRSHKKK 196
           G R  + +
Sbjct: 171 GRRGARNR 178


>pir||G70884 probable IS1602resolvase - Mycobacterium tuberculosis  (strain
           H37RV) >gi|2624314|emb|CAA15587.1| (AL008967)
           hypothetical protein Rv2792c [Mycobacterium
           tuberculosis]
           Length = 193
           
 Score = 85.4 bits (208), Expect = 5e-16
 Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 21/188 (11%)

Query: 14  AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRIL--GEKPPEETR---AVIYA 68
           AE  GV+ +T  RW ++G +           +P  +  R++   ++P + +R     +YA
Sbjct: 7   AERNGVARVTAYRWFHAGLLP----------VPARKAGRLILVDDQPADRSRRARTAVYA 56

Query: 69  RVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVD 128
           RVSS+DQ+ DL+RQV  +  + T +   +   +T++ S LN  R+   K   L+ +  V 
Sbjct: 57  RVSSADQKPDLDRQVARVTAWATTEQIAVDKVVTEVGSALNGHRR---KFLALLRDPSVK 113

Query: 129 VVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLY 188
            ++V ++DR  RFG EY+E   +     +  +   E  D   +LV D+  I+TS   +LY
Sbjct: 114 RIVVEHRDRFCRFGSEYVEAALAAQGRELVVVDSAEVDD---DLVRDMTEILTSMCARLY 170

Query: 189 GLRSHKKK 196
           G R+ + +
Sbjct: 171 GKRAAQNR 178


>pir||H70909 probable resolvase for IS_Y349 element - Mycobacterium tuberculosis
           (strain H37RV) >gi|2222753|emb|CAB09977.1| (Z97182)
           hypothetical protein Rv0605 [Mycobacterium tuberculosis]
           Length = 202
           
 Score = 82.7 bits (201), Expect = 3e-15
 Identities = 52/183 (28%), Positives = 94/183 (50%), Gaps = 11/183 (6%)

Query: 14  AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVIYARVSSS 73
           AE  GV+ +T  RW ++G +       G+  + +      L  +   + +  +YARVSS+
Sbjct: 15  AERNGVARVTAYRWFHAGLLPVPARKVGRLILVDE-----LASEAGAQPKTAVYARVSSA 69

Query: 74  DQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVDVVLVT 133
           DQ+ DL+RQV  + ++ TA+   +   +T++ S LN  R+   K   ++ +  V  ++V 
Sbjct: 70  DQKSDLDRQVARVTSWATAEQIPVDKVVTEVGSVLNGHRR---KFPAVLRDLSVTRIVVE 126

Query: 134 YKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLYGLRSH 193
           ++DR  RFG EY+    +     +  +   E  D   +LV D+  I+TS   +LYG R+ 
Sbjct: 127 HRDRFCRFGSEYVHAALAAQGRELVVVDSAEVDD---DLVWDMTEILTSMCARLYGKRAA 183

Query: 194 KKK 196
           + +
Sbjct: 184 QNR 186


>pir||H70672 probable resolvase for IS1538 - Mycobacterium tuberculosis  (strain
           H37RV) >gi|1694852|emb|CAB05433.1| (Z83018) hypothetical
           protein Rv2979c [Mycobacterium tuberculosis]
           Length = 194
           
 Score = 78.4 bits (190), Expect = 6e-14
 Identities = 53/183 (28%), Positives = 92/183 (49%), Gaps = 11/183 (6%)

Query: 14  AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPPEETRAVIYARVSSS 73
           AE  GV+  T  RW  +G +  +    G+  + + E     G + P      +YARVSS+
Sbjct: 7   AERNGVAPGTAYRWFRAGLLSVMARRVGRLILVD-EPAGDAGMRSP----TAVYARVSSA 61

Query: 74  DQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVDVVLVT 133
           DQ+ DL+RQV  +  + TA+   +   +T++ S  N  R+   K   L+ +  V  ++V 
Sbjct: 62  DQKADLDRQVARVTAWATAQQMPVDKVVTEVGSAFNEHRR---KFLSLLRDPSVHRIVVE 118

Query: 134 YKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLYGLRSH 193
           ++DR  R G +Y++  F+     +  +   E  D   +LV D+  I+TS   +LYG R+ 
Sbjct: 119 HRDRFCRLGSKYVQAAFAAQGRELVVVDSAEVDD---DLVRDMTEILTSMCARLYGKRAA 175

Query: 194 KKK 196
           + +
Sbjct: 176 ENR 178


>pir||H70522 probable resolvase within IS1537 element - Mycobacterium
           tuberculosis (strain H37RV) >gi|2224817|emb|CAB10010.1|
           (Z97188) hypothetical protein Rv3828c [Mycobacterium
           tuberculosis]
           Length = 203
           
 Score = 74.1 bits (179), Expect = 1e-12
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 21/197 (10%)

Query: 1   MCIVERLLTPRQVAEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRILGEKPP- 59
           +C   R +     AE  GV+++   RW      RA  LP     +P   V R++    P 
Sbjct: 4   VCCRNRWMNLAVWAERNGVAWVIAYRWF-----RAGLLP-----VPAQRVGRLILVNDPA 53

Query: 60  -EET---RAVIYARVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGL 115
            EE+   R ++YARVSS+DQR DL+R+V  +  + T++   +   + +    LN  R+  
Sbjct: 54  VEESGRGRTLVYARVSSADQRSDLDRRVARVTAWATSQHLSVDKVVAEGGWALNGHRR-- 111

Query: 116 QKLFKLVSERKVDVVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVED 175
            K F L+ +  V  ++V ++DR   FG EY+E         +  +   E  D   +LV D
Sbjct: 112 -KFFALLGDPVVTRIVVEHRDRFCWFGSEYVEAALVAQGRELVVVDLAEVDD---DLVGD 167

Query: 176 LIAIITSFAGKLYGLRS 192
           +  I+TS   +LYG R+
Sbjct: 168 MTEILTSMCARLYGERA 184


>sp|Q10831|YS86_MYCTU HYPOTHETICAL 31.9 KDA PROTEIN RV2886C >gi|7477415|pir||A70925
           hypothetical protein Rv2886c - Mycobacterium
           tuberculosis  (strain H37RV) >gi|1403406|emb|CAA98362.1|
           (Z74024) hypothetical protein Rv2886c [Mycobacterium
           tuberculosis]
           Length = 295
           
 Score = 69.5 bits (167), Expect = 3e-11
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 21/184 (11%)

Query: 14  AEILGVSFITIKRWIYSGKIRAVKLPTGKWRIPESEVKRIL-----GEKPPEETRAVIYA 68
           AE  GV+ +   RW+  G++           +P   V R++       +P    R  + A
Sbjct: 107 AEGNGVARVIAYRWLRVGRLP----------VPARRVGRVILVDEPAGQPGRWGRTAVCA 156

Query: 69  RVSSSDQRKDLERQVEYLLNYCTAKGYKLVDTITDIASGLNTRRKGLQKLFKLVSERKVD 128
           R+SS+DQ+ DL+RQV  +  + TA+   +   +T++ S L  RR+       L+ +  V 
Sbjct: 157 RLSSADQKVDLDRQVVGVTAWATAEQIPVGKVVTEVGSALYGRRR---TFLTLLGDPTVR 213

Query: 129 VVLVTYKDRLTRFGYEYLEYFFSQFDVRIEAIHGEEKKDAQQELVEDLIAIITSFAGKLY 188
            +++  +DRL RFG+E ++   +     +  +   +  D   ++V D+  I+TS   +LY
Sbjct: 214 RIVMKRRDRLGRFGFECVQAVLAADGRELVVV---DSADVDDDVVGDITEILTSICARLY 270

Query: 189 GLRS 192
           G R+
Sbjct: 271 GKRA 274


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.139    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72723335
Number of Sequences: 2977
Number of extensions: 2859052
Number of successful extensions: 8396
Number of sequences better than 1.0e-10: 28
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8328
Number of HSP's gapped (non-prelim): 29
length of query: 212
length of database: 189,106,746
effective HSP length: 56
effective length of query: 156
effective length of database: 155,591,474
effective search space: 24272269944
effective search space used: 24272269944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)