BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2077 (PAB2077) DE:Hypothetical protein
(429 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75156 hypothetical protein PAB2077 - Pyrococcus abyssi (st... 880 0.0
gb|AAK42158.1| Third ORF in transposon ISC1913 [Sulfolobus solfa... 309 6e-83
gb|AAK42109.1| Second ORF in transposon ISC1913 [Sulfolobus solf... 304 1e-81
gb|AAK41095.1| Orf in partial transposon ISC1913 [Sulfolobus sol... 300 2e-80
emb|CAB57506.1| (Y18930) hypothetical protein [Sulfolobus solfat... 300 2e-80
pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (st... 189 5e-47
pir||E75129 hypothetical protein PAB1802 - Pyrococcus abyssi (st... 119 7e-26
sp|Q58267|Y857_METJA HYPOTHETICAL PROTEIN MJ0857 >gi|2128545|pir... 111 1e-23
sp|Q58161|Y751_METJA HYPOTHETICAL PROTEIN MJ0751 >gi|2128474|pir... 85 1e-15
gb|AAK42165.1| Conserved hypothetical protein [Sulfolobus solfat... 76 1e-12
pir||E72413 hypothetical protein TM0135 - Thermotoga maritima (s... 73 6e-12
emb|CAC11617.1| (AL445064) transposase related protein [Thermopl... 72 1e-11
>pir||A75156 hypothetical protein PAB2077 - Pyrococcus abyssi (strain Orsay)
>gi|5457838|emb|CAB49328.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 429
Score = 880 bits (2248), Expect = 0.0
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 1 MRVTRTVVLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLR 60
MRVTRTVVLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLR
Sbjct: 1 MRVTRTVVLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLR 60
Query: 61 ELYPQLPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLWRAGLTFI 120
ELYPQLPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLWRAGLTFI
Sbjct: 61 ELYPQLPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLWRAGLTFI 120
Query: 121 RIATHKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVFLVFYKDVREYKAK 180
RIATHKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVFLVFYKDVREYKAK
Sbjct: 121 RIATHKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVFLVFYKDVREYKAK 180
Query: 181 SWIPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKVQEKWDKKLGSRNGKKRRIL 240
SWIPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKVQEKWDKKLGSRNGKKRRIL
Sbjct: 181 SWIPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKVQEKWDKKLGSRNGKKRRIL 240
Query: 241 GKLREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQLRHRIYQS 300
GKLREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQLRHRIYQS
Sbjct: 241 GKLREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQLRHRIYQS 300
Query: 301 AFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKYESGRFGVCSVGGEVWHRDI 360
AFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKYESGRFGVCSVGGEVWHRDI
Sbjct: 301 AFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKYESGRFGVCSVGGEVWHRDI 360
Query: 361 LAVWNLYLRAPQSDGSNAPSSGGLFADGSPVPLGSTATNEAIWIEKSRWLRWNSLPPTQT 420
LAVWNLYLRAPQSDGSNAPSSGGLFADGSPVPLGSTATNEAIWIEKSRWLRWNSLPPTQT
Sbjct: 361 LAVWNLYLRAPQSDGSNAPSSGGLFADGSPVPLGSTATNEAIWIEKSRWLRWNSLPPTQT 420
Query: 421 NTHLYKKKR 429
NTHLYKKKR
Sbjct: 421 NTHLYKKKR 429
>gb|AAK42158.1| Third ORF in transposon ISC1913 [Sulfolobus solfataricus]
Length = 410
Score = 309 bits (782), Expect = 6e-83
Identities = 178/418 (42%), Positives = 256/418 (60%), Gaps = 31/418 (7%)
Query: 5 RTVVLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLRELYP 64
RTV L+ ++ + E+E YRE+L + + + N TS ++KA YK RE +
Sbjct: 3 RTVKLRV-KVDYSTYSALKEVEKEYREVLEDAINYGLSNKTTSFTRIKAGVYKTEREKHK 61
Query: 65 QLPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLWRAGLTFIRIAT 124
LPSHY YT C+DA R SF K K+RG + E P VR V+I LDDHLW+ L I I+T
Sbjct: 62 DLPSHYIYTACEDASERLDSFEKLKKRGRSYTEKPSVRRVTIHLDDHLWKFNLDTISIST 121
Query: 125 HKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVFLVFYK--DVREYKAKSW 182
+ I + K +W+ N++W++AS++R +L K ++ F V +K + + Y+ K++
Sbjct: 122 KRSRILISPTFPKIFWRYYNTEWRIASEARFRLMKGN--VVEFYVIFKRDEPKPYEPKAF 179
Query: 183 IPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKVQEKWDKKLGSRNGKKRRILGK 242
IP+D+NE++V+ LI+ KP++ ETN KKITLGY YRRK + K + + RR L +
Sbjct: 180 IPVDLNENSVSVLINSKPLLLETNTKKITLGYEYRRKAITTGKSTK----DREVRRKLKR 235
Query: 243 LREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQLRHRIYQSAF 302
LRE++KK DIR KLAK+IV+EA + + IVLE LP+ P M++ V +KQLR RIY+SAF
Sbjct: 236 LRERNKKVDIRRKLAKLIVKEAFESRSAIVLEDLPRRTPEHMIKDVKDKQLRLRIYRSAF 295
Query: 303 LGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKY-----ESGRFGVCSVGGEVWH 357
++ AI KA+E+GVPV+ VNP +S +CPIH A + Y ++ R GVC G E WH
Sbjct: 296 SSMKNAIIEKAREFGVPVVLVNPSYTSTVCPIHGANIVYQLDGGDAPRVGVCEKGKEKWH 355
Query: 358 RDILAVWNLYLRAPQSDGSNAPSSGGLFADGSPVPLGSTATNEAIWIEKSRWLRWNSL 415
RD++A++NL RA D SPVPLGS +++ + S WLR SL
Sbjct: 356 RDVVALYNLARRA---------------GDVSPVPLGSKESHDPPTL--SGWLRAKSL 396
>gb|AAK42109.1| Second ORF in transposon ISC1913 [Sulfolobus solfataricus]
Length = 408
Score = 304 bits (771), Expect = 1e-81
Identities = 174/418 (41%), Positives = 253/418 (59%), Gaps = 33/418 (7%)
Query: 5 RTVVLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLRELYP 64
RTV L+ ++ K + E+E YRE+L + + + + N TS ++KA YK RE +
Sbjct: 3 RTVKLRV-KVDYKTYSALKEVEKEYREVLEEAINYGLSNKTTSFTRIKAGVYKTEREKHK 61
Query: 65 QLPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLWRAGLTFIRIAT 124
LPSHY YT C+DA R SF K KRRG + E P VR V+I LDDHLW+ L I I+T
Sbjct: 62 DLPSHYIYTACEDASERLDSFEKLKRRGRSYTEKPSVRRVTIHLDDHLWKFNLDRISIST 121
Query: 125 HKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVFLVFYK--DVREYKAKSW 182
+ I + K +W+ N W++AS++R KL K ++ F V +K + + Y+ K +
Sbjct: 122 KRSRILISPTFPKIFWRYYNKGWRIASEARFKLLK--GNVVEFYVIFKRDEPKPYEPKGF 179
Query: 183 IPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKVQEKWDKKLGSRNGKKRRILGK 242
I +D+NE++V+ L+D KP++ ETN K+ITLGY YRRK + +++ + RR L +
Sbjct: 180 ISVDLNENSVSVLVDGKPMLLETNTKRITLGYEYRRKAI----TTGKSTKDREVRRKLKR 235
Query: 243 LREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQLRHRIYQSAF 302
LRE++KK DIR KLAK+IV+EA + + IVLE LP+ P M++ V + QLR RIY++AF
Sbjct: 236 LRERNKKVDIRRKLAKLIVKEAFESRSVIVLEDLPRRTPEHMIKDVKDSQLRLRIYRAAF 295
Query: 303 LGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKY-----ESGRFGVCSVGGEVWH 357
++ AI KA+E+GVPV+ VNP ++S +CP+H + Y ++ R GVC G E WH
Sbjct: 296 SSMKNAIIEKAREFGVPVVLVNPSHTSTVCPVHGTKIVYQLDGGDAPRVGVCEKGKEKWH 355
Query: 358 RDILAVWNLYLRAPQSDGSNAPSSGGLFADGSPVPLGSTATNEAIWIEKSRWLRWNSL 415
RD++A++NL RA D SPVPLGS +++ RWLR SL
Sbjct: 356 RDVVALYNLARRA---------------GDVSPVPLGSKESHD----PPKRWLRAKSL 394
>gb|AAK41095.1| Orf in partial transposon ISC1913 [Sulfolobus solfataricus]
Length = 371
Score = 300 bits (760), Expect = 2e-80
Identities = 162/376 (43%), Positives = 232/376 (61%), Gaps = 28/376 (7%)
Query: 30 REMLLQILPFAVQNGITSPVKLKAEKYKFLRELYPQLPSHYAYTVCQDAVTRAKSFLKRK 89
RE+L + + + + TS ++KA YK RE + LPSHY YT C+DA R SF K K
Sbjct: 10 REILEEAINYGLTKNTTSFTRIKAGIYKTEREKHRDLPSHYIYTACEDASERLDSFNKLK 69
Query: 90 RRGLAKKECPEVRSVSIWLDDHLWRAGLTFIRIATHKGWIEVGLEGHKYYWKTVNSDWKL 149
+RG + + P VR V++ LDDHLW+ L I IAT +G + + K +W+ N +W +
Sbjct: 70 KRGRSYTDRPSVRRVTVHLDDHLWKFSLNVISIATKRGRVCISPIFPKIFWRYYNDNWLI 129
Query: 150 ASQSRVKLDKRERRLIVFLVFYKDVREYKAKSWIPIDVNEDNVTALIDFKPVIFETNQKK 209
AS +R KL K + F+VF KDV+ Y + +IP+D+NED+V+ LI+ KP++ ETN +
Sbjct: 130 ASGARFKLLKGNV-VEFFIVFKKDVKSYDPRGFIPVDLNEDSVSVLINGKPILLETNTRM 188
Query: 210 ITLGYYYRRKKVQEKWDKKLGSRNGKKRRILGKLREKDKKRDIRNKLAKIIVEEARKRNA 269
ITLGY Y+R+ + R+ K R + KLRE+DKK D+R K AK+IV+EA +
Sbjct: 189 ITLGYEYKRRSITN-------GRSTKDREVRRKLRERDKKLDVRRKFAKLIVKEAFGSRS 241
Query: 270 GIVLERLPKNVPRRMLEKVSNKQLRHRIYQSAFLGIQKAIERKAKEYGVPVIKVNPKNSS 329
IVLE LP+ VP M++ V +KQLR RIY+SAF ++ AI KA+E+GVPVI V+P +S
Sbjct: 242 AIVLEDLPRGVPEHMVKGVKDKQLRLRIYRSAFSSMKNAIVEKAREFGVPVILVDPSYTS 301
Query: 330 RLCPIHNAVVKYE-----SGRFGVCSVGGEVWHRDILAVWNLYLRAPQSDGSNAPSSGGL 384
+CP+H + + Y+ + R GVC GGE WHRD++A++NL RA
Sbjct: 302 SICPVHGSKIIYQPDGGSAPRVGVCGKGGERWHRDVVALYNLRKRA-------------- 347
Query: 385 FADGSPVPLGSTATNE 400
D SPVPLGS +++
Sbjct: 348 -GDVSPVPLGSKESHD 362
>emb|CAB57506.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 371
Score = 300 bits (760), Expect = 2e-80
Identities = 162/376 (43%), Positives = 232/376 (61%), Gaps = 28/376 (7%)
Query: 30 REMLLQILPFAVQNGITSPVKLKAEKYKFLRELYPQLPSHYAYTVCQDAVTRAKSFLKRK 89
RE+L + + + + TS ++KA YK RE + LPSHY YT C+DA R SF K K
Sbjct: 10 REILEEAINYGLTKNTTSFTRIKAGIYKTEREKHRDLPSHYIYTACEDASERLDSFNKLK 69
Query: 90 RRGLAKKECPEVRSVSIWLDDHLWRAGLTFIRIATHKGWIEVGLEGHKYYWKTVNSDWKL 149
+RG + + P VR V++ LDDHLW+ L I IAT +G + + K +W+ N +W +
Sbjct: 70 KRGRSYTDRPSVRRVTVHLDDHLWKFSLNVISIATKRGRVCISPIFPKIFWRYYNDNWLI 129
Query: 150 ASQSRVKLDKRERRLIVFLVFYKDVREYKAKSWIPIDVNEDNVTALIDFKPVIFETNQKK 209
AS +R KL K + F+VF KDV+ Y + +IP+D+NED+V+ LI+ KP++ ETN +
Sbjct: 130 ASGARFKLLKGNV-VEFFIVFKKDVKSYDPRGFIPVDLNEDSVSVLINGKPILLETNTRM 188
Query: 210 ITLGYYYRRKKVQEKWDKKLGSRNGKKRRILGKLREKDKKRDIRNKLAKIIVEEARKRNA 269
ITLGY Y+R+ + R+ K R + KLRE+DKK D+R K AK+IV+EA +
Sbjct: 189 ITLGYEYKRRSITN-------GRSTKDREVRRKLRERDKKLDVRRKFAKLIVKEAFGSRS 241
Query: 270 GIVLERLPKNVPRRMLEKVSNKQLRHRIYQSAFLGIQKAIERKAKEYGVPVIKVNPKNSS 329
IVLE LP+ VP M++ V +KQLR RIY+SAF ++ AI KA+E+GVPVI V+P +S
Sbjct: 242 AIVLEDLPRGVPEHMVKGVKDKQLRLRIYRSAFSSMKNAIVEKAREFGVPVILVDPSYTS 301
Query: 330 RLCPIHNAVVKYE-----SGRFGVCSVGGEVWHRDILAVWNLYLRAPQSDGSNAPSSGGL 384
+CP+H + + Y+ + R GVC GGE WHRD++A++NL RA
Sbjct: 302 SICPVHGSKIIYQPDGGSAPRVGVCGKGGERWHRDVVALYNLRKRA-------------- 347
Query: 385 FADGSPVPLGSTATNE 400
D SPVPLGS +++
Sbjct: 348 -GDVSPVPLGSKESHD 362
>pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (strain Orsay)
>gi|5458814|emb|CAB50301.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 404
Score = 189 bits (475), Expect = 5e-47
Identities = 120/339 (35%), Positives = 188/339 (55%), Gaps = 25/339 (7%)
Query: 66 LPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLW------------ 113
+P+HY YTVCQDAVTRAKSFL+ K++G + E P V+ VS+WLDD LW
Sbjct: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
Query: 114 -RAGLTFIRIATHKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVFLVFYK 172
+ IR++T KG I++ L+ HK ++K +N WK+ +++L + ER+++ + VF K
Sbjct: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
Query: 173 DVREYK-AKSWIPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKVQEK----WDK 227
+ E + S++ +D N DN++ + T+ KIT Y R+++Q+ W +
Sbjct: 121 EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR 180
Query: 228 KLGSRNGKKRRILGKLREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEK 287
KL S G+K R+++++ D++ K AK +VE A+ NA IVLE +PKN +++ +
Sbjct: 181 KLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARR 240
Query: 288 VSNKQ--LRHRIYQSAFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAV-VKYESG 344
K+ LR ++ G Q+ + KA E+ VPV+ V+P SS++CP A VK +
Sbjct: 241 RKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDD 300
Query: 345 ----RFGVCSVGGEVWHRDILAVWNLYLRAPQSDGSNAP 379
R C V G RD +AV NL P S +N P
Sbjct: 301 ALRRRVFNCPVCGFSMDRDFVAVLNLLGLFPFSPKANEP 339
>pir||E75129 hypothetical protein PAB1802 - Pyrococcus abyssi (strain Orsay)
>gi|5458261|emb|CAB49750.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 414
Score = 119 bits (295), Expect = 7e-26
Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 28/369 (7%)
Query: 8 VLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLRELYPQLP 67
V+K+ +P + + +E Y M +L + + + K + K L + +
Sbjct: 11 VVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQLRDKLLEDW--KYA 68
Query: 68 SHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLW--RAGLTFIRIATH 125
+HY + + KS+ ++ R+G K P +R +++ L+ + + I I
Sbjct: 69 NHYVDSAINQMLGLVKSYRRKLRKG-KKVRKPRLRKKFVYVKSTLFTLKGFILKITIIPR 127
Query: 126 KGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVF-----LVFYKDVREYKAK 180
+ ++E+ L + Y + W + R L +F L F K V ++ +
Sbjct: 128 EYYLEINLANYPYILPLLKEVWSG--------NLRLGGLFLFPDKLVLNFVKTVEYFEPR 179
Query: 181 SWIPIDVNEDNVTALIDFKPVIFETNQK-KITLGYYYRRKKVQ--EKWDKKLGSRNGKKR 237
W+ ID+N NVT L F+T + I Y +R+K+Q W+K+L + KK
Sbjct: 180 DWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKY 239
Query: 238 RILGKLREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQLRHRI 297
REK++ RD +KLA IV AR+R GI+LE L + R+L +K L ++
Sbjct: 240 ----SGREKNRARDFLHKLANKIVGIARERRMGIILEDL-NGIKERVLG--GSKSLNRKL 292
Query: 298 YQSAFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKYESGRFGVCSVGGEVWH 357
+ +Q+ IE KAK +GVPV+ VNPKNSS+ CP + + GR C G V
Sbjct: 293 SKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVED 352
Query: 358 RDILAVWNL 366
RD +AV NL
Sbjct: 353 RDFIAVLNL 361
>sp|Q58267|Y857_METJA HYPOTHETICAL PROTEIN MJ0857 >gi|2128545|pir||A64407 hypothetical
protein MJ0857 - Methanococcus jannaschii
>gi|1591542|gb|AAB98863.1| (U67529) M. jannaschii
predicted coding region MJ0857 [Methanococcus
jannaschii]
Length = 274
Score = 111 bits (276), Expect = 1e-23
Identities = 70/247 (28%), Positives = 124/247 (49%), Gaps = 19/247 (7%)
Query: 1 MRVTRTVVLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLR 60
+++T+T+ LKS+ L K K+ Y+E+L L F ++N S K++ Y+ ++
Sbjct: 5 IKLTKTIALKSKPLTKTKIKIIENTIESYKEVLSIALDFGLKNNRKSHRKIREGIYEEIK 64
Query: 61 ELYPQLPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLWR------ 114
P+LP+HY YT QDA TR KSF+ K+R A P+++++S+WLDD L
Sbjct: 65 SKLPKLPTHYIYTASQDASTRIKSFIAMKKRDKAYTSKPKIKNISLWLDDVLTNYRDFKN 124
Query: 115 ------------AGLTFIRIATHKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRER 162
+R++T G I + L+ HK ++K +N W + + +++L+K +
Sbjct: 125 NIEKLFLIDKEGKKTLHLRLSTPNGRIVIPLKPHKQFFKLLNEGWGIKAGFKLRLNKEDG 184
Query: 163 RLIVFLVFYKDVR-EYKAKSWIPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKV 221
+ V + K++ K+ +D N DN+T + +T+ K+T Y +
Sbjct: 185 TITVLIPLEKEITINDSYKTVYALDFNLDNITYGNFENIELIKTDLGKLTEKYSNIMTNI 244
Query: 222 QEKWDKK 228
QEK+ K
Sbjct: 245 QEKFSFK 251
>sp|Q58161|Y751_METJA HYPOTHETICAL PROTEIN MJ0751 >gi|2128474|pir||G64393 hypothetical
protein MJ0751 - Methanococcus jannaschii
>gi|1591465|gb|AAB98747.1| (U67521) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 278
Score = 85.0 bits (207), Expect = 1e-15
Identities = 66/223 (29%), Positives = 114/223 (50%), Gaps = 16/223 (7%)
Query: 166 VFLVFYKDVREYKAKSWIPIDVNEDNVT-ALIDFKPVIFETNQ------KKITLGYYYRR 218
+ + F K V + + ID+NE N+T ++ D + +T + K+I + +R
Sbjct: 54 IIIPFKKVVNPKNFEHIMTIDINEKNITYSIFDKDGNVIKTTRLDVYKLKRIHENFSKKR 113
Query: 219 KKVQEKWDKKLGSRNGKKRRILGKL--REKDKKRDIRNKLAKIIVEEARKRNAGIVLERL 276
+K+Q KKL ++ K + ++ K REK K D +K++K ++ EA K N I++E L
Sbjct: 114 EKIQ----KKLSNKPMKLKTLMEKYSGREKRKVEDYLHKISKFLISEALKYNVKILMEDL 169
Query: 277 PKNVPRRMLEKVSNKQLRHRIYQSAFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHN 336
N+ + +K +K R R+ + F +Q IE KAK G+ V VNP +S+LCPI
Sbjct: 170 T-NIREAVNKK--SKNFRRRLNRWNFSKLQFFIEYKAKWDGLDVEYVNPSRTSKLCPICG 226
Query: 337 AVVKYESGRFGVCSVGGEVWHRDILAVWNLYLRAPQSDGSNAP 379
+ R C+ V+ RD++A +NL+ ++ +P
Sbjct: 227 CKLDPNGQRLLKCNNCNLVFDRDVVATFNLFKKSQDVGSFRSP 269
>gb|AAK42165.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 382
Score = 75.7 bits (183), Expect = 1e-12
Identities = 91/341 (26%), Positives = 151/341 (43%), Gaps = 27/341 (7%)
Query: 33 LLQILPFAVQNGITSPVKLKAEKYKFLRELYPQLPSHYAYTVCQDAVTRAKSFLKRKRRG 92
L + +P + G+ S K+ Y+ LRE Y LPS A ++A+ K + RRG
Sbjct: 41 LKENVPNPEEKGVLS--KVHEALYEKLREEY-NLPSKVAEDCYREALATYKGWYNNPRRG 97
Query: 93 LAKKECPEVRSVSIWLDDHLWRAGLTFIRIATHKGWIEVGLEGHKYYWKTVNS--DWKLA 150
P V ++WL RA A + VG Y + + WK+
Sbjct: 98 ----RFPRVYRPTVWLTP---RASYNVDFEAMTVRIVSVGELSILGYPRNLKEYMGWKM- 149
Query: 151 SQSRVKLDKRERRLIVFLVFYKDVREYKAKSWIPIDVNEDNVTALIDFKPVIFETNQKKI 210
+L R+ + + +VF K+ ++ + K I +D+N V D K + +
Sbjct: 150 --KEARLVIRDDKAFLKVVFEKEEQKVEPKESIAVDINMAEVVVGKDDKNYV----RIPT 203
Query: 211 TLGYYYRRKKVQEKWDKKLGSRNGKKRRILGKLREKDKK-----RDIRNKLAKIIVEEAR 265
L + K + E+ KK R + +RIL ++R K D K+ K +V+ A+
Sbjct: 204 RLEEVHHWKSLAERLLKKYPRRWRENKRILYRVRSFHLKARRIMEDFARKVGKWVVDVAK 263
Query: 266 KRNAGIVLERLPKNVPRRMLEKVSNKQLRHRIYQSAFLGIQKAIERKAKEYGVPVIKVNP 325
+ ++ KN+ + + EK+S K+ R ++Y + +Q I +AK+ G+ V VNP
Sbjct: 264 RMGVNVIKLESLKNLIKSV-EKLS-KEFRDKLYLMQYRRLQYWISWQAKKRGMTVEFVNP 321
Query: 326 KNSSRLCPIHNAVVKYESGRFGVCSVGGEVWHRDILAVWNL 366
SS CP + S R+ CS G E RD++A+ NL
Sbjct: 322 SYSSVSCPKCGKRMVEVSHRWFKCSCGYEN-DRDVIAIMNL 361
>pir||E72413 hypothetical protein TM0135 - Thermotoga maritima (strain MSB8)
>gi|4980627|gb|AAD35228.1|AE001699_5 (AE001699)
transposase, putative [Thermotoga maritima]
Length = 410
Score = 73.0 bits (176), Expect = 6e-12
Identities = 103/406 (25%), Positives = 170/406 (41%), Gaps = 50/406 (12%)
Query: 1 MRVTRTVVLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLR 60
M VT T K E L K + F+++ Y + +L +++ T+ KL YK +R
Sbjct: 1 MTVTLTCRFKLE-LSKDQKQQFLDIATAYTNAVNYVLEQNLKDKSTNVKKLHRLYYKTIR 59
Query: 61 ELYPQLPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLWRAGL--- 117
E + LP+ A V +D K+ + + K+ P+ ++V + D R L
Sbjct: 60 EDF-DLPAQMAINVNRDVSAMYKTLWAQFKE--LKRRKPDSKAVKKFWDKPPKRKSLIVK 116
Query: 118 -TFIRIATHKG-----------------WIEV-GLEGHKYYWKTVNSDWKLASQSRVKLD 158
T+ R A+ K WI + G H Y K+ + D
Sbjct: 117 YTYNRTASFKKINGEWHASLSTLQGRIKWIPMKGWSKHFEYLKSCK-----IGDPILTYD 171
Query: 159 KRERRLIVFLVFYKDVREYKAKSWIPIDVNEDNVTALIDFKPVIF------ETNQKKITL 212
K + + + +V+E++ K + +DV E ++ A+ K + E Q+K
Sbjct: 172 KSSKTFFLLVPVTLEVQEHQPKEIVGVDVGERHIAAVASTKGTRYLIDLPEEFKQRK--- 228
Query: 213 GYYYRRKKVQEKWDKKLGSRNGKKRRILGKLREKDKKRDIRNKLAKIIVEEARKRNAGIV 272
+Y+R + E K G+R+ K++ REK ++ + +AK + A V
Sbjct: 229 -QHYQRLR-SELMSK--GTRSAKRKLARISRREKRFTENVLHIIAKKLTTS--HPGARFV 282
Query: 273 LERLPKNVPRRMLEKVSNKQLRHRIYQSAFLGIQKAIERKAK-EYGVPVIKVNPKNSSRL 331
LE L + R+ + +K+ R + Q F +Q+ IE KAK YGV KV+P +S+
Sbjct: 283 LEDLTQIRANRITYRGKDKEARRQSEQWPFASLQQKIEYKAKLYYGVQSEKVDPSYTSQT 342
Query: 332 CPIHNAVVKY---ESGRFGVCSVGGEVWHRDILAVWNLYLRAPQSD 374
CP V K + G VC G H DI+ N+ LR D
Sbjct: 343 CPRCGHVSKENRPDHGERFVCQSCGYEEHADIVGAINIALRVLAKD 388
>emb|CAC11617.1| (AL445064) transposase related protein [Thermoplasma acidophilum]
Length = 350
Score = 72.2 bits (174), Expect = 1e-11
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 27/227 (11%)
Query: 180 KSWIPIDVNEDNVTALIDFKPV--IFETNQKKITLGYYYR--RKKVQEKWDKKLGSRNGK 235
K WI ID N A++ I++ +K + Y+ RKK+Q+K K
Sbjct: 130 KKWIGIDRNATGHIAVVADPQTGKIWKLGKKAEHIHNKYKAIRKKLQKK----------K 179
Query: 236 KRRILGKLREKDKK--RDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQL 293
K ++L K+++++ + RD+ +K++K IVE A+ NAGI LE+L N R K K
Sbjct: 180 KYKLLKKIKDRESRIVRDLNHKVSKKIVEIAQGENAGIKLEKL--NGIRS--NKKHTKPF 235
Query: 294 RHRIYQSAFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKYESGRFGVCSVGG 353
++ + +F ++ I+ KAK G+P+ V+P+ +S+ C + E F C G
Sbjct: 236 KYGLNSWSFYQLEFFIQYKAKMNGIPLTYVDPRYTSKECSRCGYIGIREDKSF-ECPRCG 294
Query: 354 EVWHRDILAVWNLYLRAPQSDGSNAPSSGGLFADGSPVPLGSTATNE 400
V H D A +N+ +R P +G +G L AD S GST T E
Sbjct: 295 HVDHADANASFNIAVRPPLMEG-----TGRLHAD-SDACKGSTDTPE 335
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167243195
Number of Sequences: 2977
Number of extensions: 7321408
Number of successful extensions: 19951
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19913
Number of HSP's gapped (non-prelim): 13
length of query: 429
length of database: 189,106,746
effective HSP length: 55
effective length of query: 374
effective length of database: 156,189,961
effective search space: 58415045414
effective search space used: 58415045414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)