BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2079 (PAB2079) DE:Hypothetical protein
         (123 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75155 hypothetical protein PAB2079 - Pyrococcus abyssi (st...   246  8e-65
sp|Q58521|YB21_METJA HYPOTHETICAL PROTEIN MJ1121 >gi|2128678|pir...    85  4e-16
gi|11499578 virulence associated protein C (vapC-1) [Archaeoglob...    68  5e-11

>pir||F75155 hypothetical protein PAB2079 - Pyrococcus abyssi (strain Orsay)
           >gi|5457835|emb|CAB49325.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 123
           
 Score =  246 bits (621), Expect = 8e-65
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MDKLLDTSVLIEVFRGNAKILTQLPPEEEYAIPSIVLFELLCGGLKPKQRLALEKMPVVN 60
           MDKLLDTSVLIEVFRGNAKILTQLPPEEEYAIPSIVLFELLCGGLKPKQRLALEKMPVVN
Sbjct: 1   MDKLLDTSVLIEVFRGNAKILTQLPPEEEYAIPSIVLFELLCGGLKPKQRLALEKMPVVN 60

Query: 61  FDKTSAEVAGEIFKDLISKGLRPPTKDLLIAATAIAHNIPLYTCDRGFERFKEYGLKLVI 120
           FDKTSAEVAGEIFKDLISKGLRPPTKDLLIAATAIAHNIPLYTCDRGFERFKEYGLKLVI
Sbjct: 61  FDKTSAEVAGEIFKDLISKGLRPPTKDLLIAATAIAHNIPLYTCDRGFERFKEYGLKLVI 120

Query: 121 LER 123
           LER
Sbjct: 121 LER 123


>sp|Q58521|YB21_METJA HYPOTHETICAL PROTEIN MJ1121 >gi|2128678|pir||H64439 hypothetical
          protein MJ1121 - Methanococcus jannaschii
          >gi|1499973|gb|AAB99123.1| (U67555) virulence
          associated protein C (vapC) [Methanococcus jannaschii]
          Length = 94
          
 Score = 84.7 bits (206), Expect = 4e-16
 Identities = 43/92 (46%), Positives = 61/92 (65%), Gaps = 1/92 (1%)

Query: 1  MDKLLDTSVLIEVFRGNAKILTQLPPEEEYAIPSIVLFELLCGGLKPKQRLALEKMPVVN 60
          MD ++DTSV+IE+FRGN   L Q+  +    I SI +FEL CG LK  + + ++ +P +N
Sbjct: 1  MDAVIDTSVIIEIFRGNKDTLYQIC-DYNCKITSITVFELYCGNLKENEMIMIDSLPKLN 59

Query: 61 FDKTSAEVAGEIFKDLISKGLRPPTKDLLIAA 92
          FD  S+++AG IFK L  +G  P  KDLLIA+
Sbjct: 60 FDDKSSKIAGNIFKKLKKEGKIPSVKDLLIAS 91


>gi|11499578 virulence associated protein C (vapC-1) [Archaeoglobus fulgidus]
          >gi|3123137|sp|O28283|YJ96_ARCFU HYPOTHETICAL PROTEIN
          AF1996 >gi|7448927|pir||C69499 virulence associated
          protein C (vapC-1) homolog - Archaeoglobus fulgidus
          >gi|2648548|gb|AAB89263.1| (AE000965) virulence
          associated protein C (vapC-1) [Archaeoglobus fulgidus]
          Length = 84
          
 Score = 67.5 bits (162), Expect = 5e-11
 Identities = 30/68 (44%), Positives = 51/68 (74%)

Query: 9  VLIEVFRGNAKILTQLPPEEEYAIPSIVLFELLCGGLKPKQRLALEKMPVVNFDKTSAEV 68
          V+I++F+G+  +L +L  +  Y I  I LFEL CG LK ++ + LEK+P +NF+++SA++
Sbjct: 9  VIIDLFKGDKGLLEKLNGDTVYGISVITLFELQCGSLKEREEIFLEKIPKLNFEESSAKL 68

Query: 69 AGEIFKDL 76
          AG+IF++L
Sbjct: 69 AGKIFREL 76


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45130722
Number of Sequences: 2977
Number of extensions: 1695298
Number of successful extensions: 3195
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3192
Number of HSP's gapped (non-prelim): 3
length of query: 123
length of database: 189,106,746
effective HSP length: 52
effective length of query: 71
effective length of database: 157,985,422
effective search space: 11216964962
effective search space used: 11216964962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)